Multiple sequence alignment - TraesCS3D01G430200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G430200 chr3D 100.000 2705 0 0 1 2705 544438610 544441314 0.000000e+00 4996.0
1 TraesCS3D01G430200 chr3D 95.608 683 19 2 2032 2705 546318581 546319261 0.000000e+00 1085.0
2 TraesCS3D01G430200 chr3D 87.517 737 89 1 979 1715 544339953 544339220 0.000000e+00 848.0
3 TraesCS3D01G430200 chr3D 86.969 706 87 3 979 1683 544277979 544277278 0.000000e+00 789.0
4 TraesCS3D01G430200 chr3D 86.130 721 93 3 994 1708 544353420 544354139 0.000000e+00 771.0
5 TraesCS3D01G430200 chr3D 89.408 321 21 8 1824 2140 544441929 544441618 2.520000e-105 392.0
6 TraesCS3D01G430200 chr3D 87.850 321 25 9 1824 2140 546319875 546319565 5.500000e-97 364.0
7 TraesCS3D01G430200 chr3D 88.235 68 8 0 450 517 12385101 12385168 6.210000e-12 82.4
8 TraesCS3D01G430200 chr3A 96.101 795 21 5 959 1744 681396009 681396802 0.000000e+00 1288.0
9 TraesCS3D01G430200 chr3A 87.788 737 87 1 979 1715 681318779 681318046 0.000000e+00 859.0
10 TraesCS3D01G430200 chr3A 87.310 725 87 4 994 1715 681328803 681329525 0.000000e+00 824.0
11 TraesCS3D01G430200 chr3A 90.291 309 14 7 646 951 681395671 681395966 9.080000e-105 390.0
12 TraesCS3D01G430200 chr3A 85.714 63 4 5 2220 2279 146609256 146609196 8.090000e-06 62.1
13 TraesCS3D01G430200 chr3B 93.441 869 43 3 959 1824 720263032 720263889 0.000000e+00 1277.0
14 TraesCS3D01G430200 chr3B 88.784 740 78 4 979 1714 720183255 720182517 0.000000e+00 902.0
15 TraesCS3D01G430200 chr3B 87.602 734 88 1 982 1715 720178238 720177508 0.000000e+00 848.0
16 TraesCS3D01G430200 chr3B 88.129 556 44 11 413 964 720262468 720263005 2.270000e-180 641.0
17 TraesCS3D01G430200 chr3B 90.208 337 26 5 413 749 720262034 720262363 1.490000e-117 433.0
18 TraesCS3D01G430200 chr3B 93.511 262 15 1 2444 2705 723267138 723267397 3.270000e-104 388.0
19 TraesCS3D01G430200 chr3B 85.047 107 15 1 407 513 807856861 807856756 1.020000e-19 108.0
20 TraesCS3D01G430200 chr3B 93.023 43 3 0 2237 2279 189415334 189415292 2.250000e-06 63.9
21 TraesCS3D01G430200 chr7A 88.985 581 52 6 2127 2705 575316716 575316146 0.000000e+00 708.0
22 TraesCS3D01G430200 chr7A 81.908 304 29 16 1827 2128 575315565 575315844 1.620000e-57 233.0
23 TraesCS3D01G430200 chr4D 89.590 317 31 2 2389 2705 290436880 290437194 4.200000e-108 401.0
24 TraesCS3D01G430200 chr4D 90.136 294 16 7 1824 2115 290436595 290436877 1.180000e-98 370.0
25 TraesCS3D01G430200 chr4D 87.296 307 25 9 1824 2128 290437805 290437511 3.340000e-89 339.0
26 TraesCS3D01G430200 chr5A 86.136 339 24 14 1824 2150 631503139 631502812 7.170000e-91 344.0
27 TraesCS3D01G430200 chr5A 81.875 160 17 6 1824 1979 546234561 546234712 1.020000e-24 124.0
28 TraesCS3D01G430200 chr5B 86.335 322 22 8 1825 2133 426559905 426559593 5.580000e-87 331.0
29 TraesCS3D01G430200 chr5B 75.304 247 49 9 276 516 493158718 493158958 1.020000e-19 108.0
30 TraesCS3D01G430200 chr1A 83.385 325 35 11 10 332 135711447 135711754 1.590000e-72 283.0
31 TraesCS3D01G430200 chr2B 80.241 415 41 21 2292 2705 572309629 572310003 9.540000e-70 274.0
32 TraesCS3D01G430200 chr4A 83.088 272 34 8 1824 2094 616283987 616284247 1.250000e-58 237.0
33 TraesCS3D01G430200 chr4A 82.128 235 30 8 1824 2056 599940821 599941045 9.890000e-45 191.0
34 TraesCS3D01G430200 chr7D 82.883 222 28 6 1820 2040 14176413 14176201 9.890000e-45 191.0
35 TraesCS3D01G430200 chr7D 86.170 94 9 3 1820 1909 635865752 635865659 6.160000e-17 99.0
36 TraesCS3D01G430200 chr6B 77.256 277 49 10 1824 2094 281257891 281258159 1.680000e-32 150.0
37 TraesCS3D01G430200 chr4B 82.911 158 17 7 1824 1979 5091366 5091515 1.690000e-27 134.0
38 TraesCS3D01G430200 chr4B 90.000 80 5 3 1822 1898 540471006 540471085 1.710000e-17 100.0
39 TraesCS3D01G430200 chr6A 74.576 295 62 11 230 516 12362918 12363207 1.700000e-22 117.0
40 TraesCS3D01G430200 chr7B 79.429 175 21 11 1820 1991 739918971 739919133 2.850000e-20 110.0
41 TraesCS3D01G430200 chr2D 86.364 88 12 0 1822 1909 129939937 129940024 2.220000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G430200 chr3D 544438610 544441314 2704 False 4996.000000 4996 100.000000 1 2705 1 chr3D.!!$F3 2704
1 TraesCS3D01G430200 chr3D 546318581 546319261 680 False 1085.000000 1085 95.608000 2032 2705 1 chr3D.!!$F4 673
2 TraesCS3D01G430200 chr3D 544339220 544339953 733 True 848.000000 848 87.517000 979 1715 1 chr3D.!!$R2 736
3 TraesCS3D01G430200 chr3D 544277278 544277979 701 True 789.000000 789 86.969000 979 1683 1 chr3D.!!$R1 704
4 TraesCS3D01G430200 chr3D 544353420 544354139 719 False 771.000000 771 86.130000 994 1708 1 chr3D.!!$F2 714
5 TraesCS3D01G430200 chr3A 681318046 681318779 733 True 859.000000 859 87.788000 979 1715 1 chr3A.!!$R2 736
6 TraesCS3D01G430200 chr3A 681395671 681396802 1131 False 839.000000 1288 93.196000 646 1744 2 chr3A.!!$F2 1098
7 TraesCS3D01G430200 chr3A 681328803 681329525 722 False 824.000000 824 87.310000 994 1715 1 chr3A.!!$F1 721
8 TraesCS3D01G430200 chr3B 720182517 720183255 738 True 902.000000 902 88.784000 979 1714 1 chr3B.!!$R3 735
9 TraesCS3D01G430200 chr3B 720177508 720178238 730 True 848.000000 848 87.602000 982 1715 1 chr3B.!!$R2 733
10 TraesCS3D01G430200 chr3B 720262034 720263889 1855 False 783.666667 1277 90.592667 413 1824 3 chr3B.!!$F2 1411
11 TraesCS3D01G430200 chr7A 575316146 575316716 570 True 708.000000 708 88.985000 2127 2705 1 chr7A.!!$R1 578
12 TraesCS3D01G430200 chr4D 290436595 290437194 599 False 385.500000 401 89.863000 1824 2705 2 chr4D.!!$F1 881

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
358 359 0.033796 AATCAGCCTGACATGTGGGG 60.034 55.0 1.15 6.17 0.0 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1947 2446 0.108041 TCAAACGACCCTAATCCGCC 60.108 55.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.271816 CGTCGCCGGAGATGGGAG 62.272 72.222 18.79 1.87 0.00 4.30
19 20 3.917760 GTCGCCGGAGATGGGAGG 61.918 72.222 12.23 0.00 0.00 4.30
41 42 4.436998 GGAGCACGACGGTGGAGG 62.437 72.222 0.00 0.00 44.54 4.30
42 43 3.681835 GAGCACGACGGTGGAGGT 61.682 66.667 0.00 0.00 44.54 3.85
43 44 2.282674 AGCACGACGGTGGAGGTA 60.283 61.111 0.00 0.00 44.54 3.08
44 45 2.181021 GCACGACGGTGGAGGTAG 59.819 66.667 0.00 0.00 44.54 3.18
45 46 2.338015 GCACGACGGTGGAGGTAGA 61.338 63.158 0.00 0.00 44.54 2.59
46 47 1.801332 CACGACGGTGGAGGTAGAG 59.199 63.158 0.00 0.00 40.58 2.43
47 48 1.378250 ACGACGGTGGAGGTAGAGG 60.378 63.158 0.00 0.00 0.00 3.69
48 49 2.772691 CGACGGTGGAGGTAGAGGC 61.773 68.421 0.00 0.00 0.00 4.70
49 50 2.754658 ACGGTGGAGGTAGAGGCG 60.755 66.667 0.00 0.00 0.00 5.52
50 51 2.754658 CGGTGGAGGTAGAGGCGT 60.755 66.667 0.00 0.00 0.00 5.68
51 52 2.772691 CGGTGGAGGTAGAGGCGTC 61.773 68.421 0.00 0.00 0.00 5.19
52 53 2.424733 GGTGGAGGTAGAGGCGTCC 61.425 68.421 2.06 0.00 42.10 4.79
53 54 2.043248 TGGAGGTAGAGGCGTCCC 60.043 66.667 2.06 0.00 41.34 4.46
54 55 2.279408 GGAGGTAGAGGCGTCCCT 59.721 66.667 2.06 3.24 46.74 4.20
55 56 2.128507 GGAGGTAGAGGCGTCCCTG 61.129 68.421 8.70 0.00 43.12 4.45
56 57 2.760385 AGGTAGAGGCGTCCCTGC 60.760 66.667 2.06 0.00 43.12 4.85
57 58 4.208686 GGTAGAGGCGTCCCTGCG 62.209 72.222 2.06 0.00 43.12 5.18
84 85 4.864334 GGGCAGGCCGATCAGGTG 62.864 72.222 3.89 0.00 43.70 4.00
85 86 3.785859 GGCAGGCCGATCAGGTGA 61.786 66.667 0.00 0.00 43.70 4.02
86 87 2.507944 GCAGGCCGATCAGGTGAT 59.492 61.111 0.00 0.00 43.70 3.06
87 88 1.890979 GCAGGCCGATCAGGTGATG 60.891 63.158 0.00 0.00 43.70 3.07
88 89 1.890979 CAGGCCGATCAGGTGATGC 60.891 63.158 0.00 0.00 43.70 3.91
89 90 2.969238 GGCCGATCAGGTGATGCG 60.969 66.667 0.00 1.67 43.70 4.73
90 91 2.106938 GCCGATCAGGTGATGCGA 59.893 61.111 0.00 0.00 43.70 5.10
91 92 2.240500 GCCGATCAGGTGATGCGAC 61.241 63.158 0.00 0.00 43.70 5.19
92 93 1.439228 CCGATCAGGTGATGCGACT 59.561 57.895 0.00 0.00 34.37 4.18
93 94 0.873312 CCGATCAGGTGATGCGACTG 60.873 60.000 0.00 0.00 34.37 3.51
94 95 0.873312 CGATCAGGTGATGCGACTGG 60.873 60.000 0.00 0.00 34.37 4.00
95 96 0.531532 GATCAGGTGATGCGACTGGG 60.532 60.000 0.00 0.00 34.37 4.45
96 97 2.599645 ATCAGGTGATGCGACTGGGC 62.600 60.000 0.00 0.00 32.68 5.36
97 98 3.005539 AGGTGATGCGACTGGGCT 61.006 61.111 0.00 0.00 0.00 5.19
98 99 2.821366 GGTGATGCGACTGGGCTG 60.821 66.667 0.00 0.00 0.00 4.85
99 100 2.265739 GTGATGCGACTGGGCTGA 59.734 61.111 0.00 0.00 0.00 4.26
100 101 1.375908 GTGATGCGACTGGGCTGAA 60.376 57.895 0.00 0.00 0.00 3.02
101 102 1.078918 TGATGCGACTGGGCTGAAG 60.079 57.895 0.00 0.00 0.00 3.02
102 103 1.219124 GATGCGACTGGGCTGAAGA 59.781 57.895 0.00 0.00 0.00 2.87
103 104 0.391661 GATGCGACTGGGCTGAAGAA 60.392 55.000 0.00 0.00 0.00 2.52
104 105 0.036732 ATGCGACTGGGCTGAAGAAA 59.963 50.000 0.00 0.00 0.00 2.52
105 106 0.603707 TGCGACTGGGCTGAAGAAAG 60.604 55.000 0.00 0.00 0.00 2.62
106 107 1.301677 GCGACTGGGCTGAAGAAAGG 61.302 60.000 0.00 0.00 0.00 3.11
107 108 0.035458 CGACTGGGCTGAAGAAAGGT 59.965 55.000 0.00 0.00 0.00 3.50
108 109 1.528129 GACTGGGCTGAAGAAAGGTG 58.472 55.000 0.00 0.00 0.00 4.00
109 110 0.111253 ACTGGGCTGAAGAAAGGTGG 59.889 55.000 0.00 0.00 0.00 4.61
110 111 1.228552 TGGGCTGAAGAAAGGTGGC 60.229 57.895 0.00 0.00 0.00 5.01
111 112 1.075659 GGGCTGAAGAAAGGTGGCT 59.924 57.895 0.00 0.00 0.00 4.75
112 113 1.246737 GGGCTGAAGAAAGGTGGCTG 61.247 60.000 0.00 0.00 0.00 4.85
113 114 1.246737 GGCTGAAGAAAGGTGGCTGG 61.247 60.000 0.00 0.00 0.00 4.85
114 115 0.538287 GCTGAAGAAAGGTGGCTGGT 60.538 55.000 0.00 0.00 0.00 4.00
115 116 1.242076 CTGAAGAAAGGTGGCTGGTG 58.758 55.000 0.00 0.00 0.00 4.17
116 117 0.178992 TGAAGAAAGGTGGCTGGTGG 60.179 55.000 0.00 0.00 0.00 4.61
117 118 1.527433 GAAGAAAGGTGGCTGGTGGC 61.527 60.000 0.00 0.00 40.90 5.01
126 127 2.825836 GCTGGTGGCCGAATCTGG 60.826 66.667 0.00 0.00 34.27 3.86
153 154 2.936032 GGTGCTCCTCCCCCTGTT 60.936 66.667 0.00 0.00 0.00 3.16
154 155 2.539081 GGTGCTCCTCCCCCTGTTT 61.539 63.158 0.00 0.00 0.00 2.83
155 156 1.303643 GTGCTCCTCCCCCTGTTTG 60.304 63.158 0.00 0.00 0.00 2.93
156 157 1.463214 TGCTCCTCCCCCTGTTTGA 60.463 57.895 0.00 0.00 0.00 2.69
157 158 1.002011 GCTCCTCCCCCTGTTTGAC 60.002 63.158 0.00 0.00 0.00 3.18
158 159 1.685820 CTCCTCCCCCTGTTTGACC 59.314 63.158 0.00 0.00 0.00 4.02
159 160 0.842467 CTCCTCCCCCTGTTTGACCT 60.842 60.000 0.00 0.00 0.00 3.85
160 161 0.840722 TCCTCCCCCTGTTTGACCTC 60.841 60.000 0.00 0.00 0.00 3.85
161 162 1.296715 CTCCCCCTGTTTGACCTCG 59.703 63.158 0.00 0.00 0.00 4.63
162 163 2.359975 CCCCCTGTTTGACCTCGC 60.360 66.667 0.00 0.00 0.00 5.03
163 164 2.359975 CCCCTGTTTGACCTCGCC 60.360 66.667 0.00 0.00 0.00 5.54
164 165 2.742372 CCCTGTTTGACCTCGCCG 60.742 66.667 0.00 0.00 0.00 6.46
165 166 2.030562 CCTGTTTGACCTCGCCGT 59.969 61.111 0.00 0.00 0.00 5.68
166 167 2.027625 CCTGTTTGACCTCGCCGTC 61.028 63.158 0.00 0.00 0.00 4.79
167 168 2.355363 TGTTTGACCTCGCCGTCG 60.355 61.111 0.00 0.00 35.40 5.12
168 169 3.110178 GTTTGACCTCGCCGTCGG 61.110 66.667 6.99 6.99 35.40 4.79
178 179 4.038080 GCCGTCGGCCTTTTGGTG 62.038 66.667 26.23 0.00 44.06 4.17
179 180 2.593436 CCGTCGGCCTTTTGGTGT 60.593 61.111 0.00 0.00 42.99 4.16
180 181 2.190841 CCGTCGGCCTTTTGGTGTT 61.191 57.895 0.00 0.00 42.99 3.32
181 182 1.008995 CGTCGGCCTTTTGGTGTTG 60.009 57.895 0.00 0.00 42.99 3.33
182 183 1.720694 CGTCGGCCTTTTGGTGTTGT 61.721 55.000 0.00 0.00 42.99 3.32
183 184 1.310904 GTCGGCCTTTTGGTGTTGTA 58.689 50.000 0.00 0.00 42.99 2.41
184 185 1.265905 GTCGGCCTTTTGGTGTTGTAG 59.734 52.381 0.00 0.00 42.99 2.74
185 186 0.596082 CGGCCTTTTGGTGTTGTAGG 59.404 55.000 0.00 0.00 42.99 3.18
186 187 1.699730 GGCCTTTTGGTGTTGTAGGT 58.300 50.000 0.00 0.00 42.99 3.08
187 188 2.811136 CGGCCTTTTGGTGTTGTAGGTA 60.811 50.000 0.00 0.00 42.99 3.08
188 189 2.817844 GGCCTTTTGGTGTTGTAGGTAG 59.182 50.000 0.00 0.00 42.99 3.18
189 190 3.483421 GCCTTTTGGTGTTGTAGGTAGT 58.517 45.455 0.00 0.00 42.99 2.73
190 191 3.252458 GCCTTTTGGTGTTGTAGGTAGTG 59.748 47.826 0.00 0.00 42.99 2.74
191 192 3.818773 CCTTTTGGTGTTGTAGGTAGTGG 59.181 47.826 0.00 0.00 34.07 4.00
192 193 3.495434 TTTGGTGTTGTAGGTAGTGGG 57.505 47.619 0.00 0.00 0.00 4.61
193 194 0.688487 TGGTGTTGTAGGTAGTGGGC 59.312 55.000 0.00 0.00 0.00 5.36
194 195 0.390735 GGTGTTGTAGGTAGTGGGCG 60.391 60.000 0.00 0.00 0.00 6.13
195 196 0.390735 GTGTTGTAGGTAGTGGGCGG 60.391 60.000 0.00 0.00 0.00 6.13
196 197 1.449070 GTTGTAGGTAGTGGGCGGC 60.449 63.158 0.00 0.00 0.00 6.53
197 198 3.009192 TTGTAGGTAGTGGGCGGCG 62.009 63.158 0.51 0.51 0.00 6.46
198 199 4.217159 GTAGGTAGTGGGCGGCGG 62.217 72.222 9.78 0.00 0.00 6.13
213 214 4.135153 CGGCGGGAGGAGTCAGTG 62.135 72.222 0.00 0.00 0.00 3.66
214 215 4.459089 GGCGGGAGGAGTCAGTGC 62.459 72.222 0.00 0.00 0.00 4.40
215 216 4.803426 GCGGGAGGAGTCAGTGCG 62.803 72.222 0.00 0.00 0.00 5.34
216 217 3.062466 CGGGAGGAGTCAGTGCGA 61.062 66.667 0.00 0.00 0.00 5.10
217 218 2.888863 GGGAGGAGTCAGTGCGAG 59.111 66.667 0.00 0.00 0.00 5.03
218 219 2.716017 GGGAGGAGTCAGTGCGAGG 61.716 68.421 0.00 0.00 0.00 4.63
219 220 2.716017 GGAGGAGTCAGTGCGAGGG 61.716 68.421 0.00 0.00 0.00 4.30
220 221 2.681778 AGGAGTCAGTGCGAGGGG 60.682 66.667 0.00 0.00 0.00 4.79
221 222 3.775654 GGAGTCAGTGCGAGGGGG 61.776 72.222 0.00 0.00 0.00 5.40
235 236 2.041405 GGGGGAGAGGAGGTGGAG 60.041 72.222 0.00 0.00 0.00 3.86
236 237 2.041405 GGGGAGAGGAGGTGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
237 238 2.637640 GGGGAGAGGAGGTGGAGGA 61.638 68.421 0.00 0.00 0.00 3.71
238 239 1.075600 GGGAGAGGAGGTGGAGGAG 60.076 68.421 0.00 0.00 0.00 3.69
239 240 1.075600 GGAGAGGAGGTGGAGGAGG 60.076 68.421 0.00 0.00 0.00 4.30
240 241 1.585651 GGAGAGGAGGTGGAGGAGGA 61.586 65.000 0.00 0.00 0.00 3.71
241 242 0.336737 GAGAGGAGGTGGAGGAGGAA 59.663 60.000 0.00 0.00 0.00 3.36
242 243 0.793617 AGAGGAGGTGGAGGAGGAAA 59.206 55.000 0.00 0.00 0.00 3.13
243 244 1.152271 AGAGGAGGTGGAGGAGGAAAA 59.848 52.381 0.00 0.00 0.00 2.29
244 245 1.557371 GAGGAGGTGGAGGAGGAAAAG 59.443 57.143 0.00 0.00 0.00 2.27
245 246 0.621082 GGAGGTGGAGGAGGAAAAGG 59.379 60.000 0.00 0.00 0.00 3.11
246 247 0.621082 GAGGTGGAGGAGGAAAAGGG 59.379 60.000 0.00 0.00 0.00 3.95
247 248 0.846870 AGGTGGAGGAGGAAAAGGGG 60.847 60.000 0.00 0.00 0.00 4.79
248 249 1.691823 GTGGAGGAGGAAAAGGGGG 59.308 63.158 0.00 0.00 0.00 5.40
249 250 0.845102 GTGGAGGAGGAAAAGGGGGA 60.845 60.000 0.00 0.00 0.00 4.81
250 251 0.103608 TGGAGGAGGAAAAGGGGGAA 60.104 55.000 0.00 0.00 0.00 3.97
251 252 0.626382 GGAGGAGGAAAAGGGGGAAG 59.374 60.000 0.00 0.00 0.00 3.46
252 253 1.670059 GAGGAGGAAAAGGGGGAAGA 58.330 55.000 0.00 0.00 0.00 2.87
253 254 1.993301 GAGGAGGAAAAGGGGGAAGAA 59.007 52.381 0.00 0.00 0.00 2.52
254 255 1.996291 AGGAGGAAAAGGGGGAAGAAG 59.004 52.381 0.00 0.00 0.00 2.85
255 256 1.993301 GGAGGAAAAGGGGGAAGAAGA 59.007 52.381 0.00 0.00 0.00 2.87
256 257 2.378886 GGAGGAAAAGGGGGAAGAAGAA 59.621 50.000 0.00 0.00 0.00 2.52
257 258 3.562393 GGAGGAAAAGGGGGAAGAAGAAG 60.562 52.174 0.00 0.00 0.00 2.85
258 259 3.330998 GAGGAAAAGGGGGAAGAAGAAGA 59.669 47.826 0.00 0.00 0.00 2.87
259 260 3.727391 AGGAAAAGGGGGAAGAAGAAGAA 59.273 43.478 0.00 0.00 0.00 2.52
260 261 4.170053 AGGAAAAGGGGGAAGAAGAAGAAA 59.830 41.667 0.00 0.00 0.00 2.52
261 262 4.899457 GGAAAAGGGGGAAGAAGAAGAAAA 59.101 41.667 0.00 0.00 0.00 2.29
262 263 5.365605 GGAAAAGGGGGAAGAAGAAGAAAAA 59.634 40.000 0.00 0.00 0.00 1.94
283 284 4.469469 AAAAAGGTGAAAGGAGATGGGA 57.531 40.909 0.00 0.00 0.00 4.37
284 285 3.728385 AAAGGTGAAAGGAGATGGGAG 57.272 47.619 0.00 0.00 0.00 4.30
285 286 1.589414 AGGTGAAAGGAGATGGGAGG 58.411 55.000 0.00 0.00 0.00 4.30
286 287 0.106967 GGTGAAAGGAGATGGGAGGC 60.107 60.000 0.00 0.00 0.00 4.70
287 288 0.915364 GTGAAAGGAGATGGGAGGCT 59.085 55.000 0.00 0.00 0.00 4.58
288 289 0.914644 TGAAAGGAGATGGGAGGCTG 59.085 55.000 0.00 0.00 0.00 4.85
289 290 1.207791 GAAAGGAGATGGGAGGCTGA 58.792 55.000 0.00 0.00 0.00 4.26
290 291 0.915364 AAAGGAGATGGGAGGCTGAC 59.085 55.000 0.00 0.00 0.00 3.51
291 292 0.252881 AAGGAGATGGGAGGCTGACA 60.253 55.000 0.00 0.00 0.00 3.58
292 293 0.690411 AGGAGATGGGAGGCTGACAG 60.690 60.000 0.00 0.00 0.00 3.51
293 294 1.145819 GAGATGGGAGGCTGACAGC 59.854 63.158 19.55 19.55 41.46 4.40
294 295 1.306825 AGATGGGAGGCTGACAGCT 60.307 57.895 25.92 12.70 41.99 4.24
295 296 1.153208 GATGGGAGGCTGACAGCTG 60.153 63.158 25.92 13.48 41.99 4.24
296 297 2.605854 GATGGGAGGCTGACAGCTGG 62.606 65.000 25.92 0.73 41.99 4.85
297 298 4.106925 GGGAGGCTGACAGCTGGG 62.107 72.222 25.92 8.88 41.99 4.45
298 299 3.325753 GGAGGCTGACAGCTGGGT 61.326 66.667 25.92 9.35 41.99 4.51
299 300 2.267324 GAGGCTGACAGCTGGGTC 59.733 66.667 25.92 14.01 41.99 4.46
300 301 3.322318 GAGGCTGACAGCTGGGTCC 62.322 68.421 25.92 12.99 41.99 4.46
301 302 3.640407 GGCTGACAGCTGGGTCCA 61.640 66.667 25.92 9.21 41.99 4.02
302 303 2.673523 GCTGACAGCTGGGTCCAT 59.326 61.111 20.41 0.00 38.45 3.41
303 304 1.451028 GCTGACAGCTGGGTCCATC 60.451 63.158 20.41 5.70 38.45 3.51
304 305 1.908340 GCTGACAGCTGGGTCCATCT 61.908 60.000 20.41 0.00 38.45 2.90
305 306 0.617413 CTGACAGCTGGGTCCATCTT 59.383 55.000 19.93 0.00 36.97 2.40
306 307 0.615331 TGACAGCTGGGTCCATCTTC 59.385 55.000 19.93 3.35 36.97 2.87
307 308 0.107459 GACAGCTGGGTCCATCTTCC 60.107 60.000 19.93 0.00 0.00 3.46
308 309 0.842030 ACAGCTGGGTCCATCTTCCA 60.842 55.000 19.93 0.00 0.00 3.53
309 310 0.393537 CAGCTGGGTCCATCTTCCAC 60.394 60.000 5.57 0.00 0.00 4.02
310 311 1.077429 GCTGGGTCCATCTTCCACC 60.077 63.158 0.00 0.00 0.00 4.61
311 312 1.566298 GCTGGGTCCATCTTCCACCT 61.566 60.000 0.00 0.00 0.00 4.00
312 313 0.543749 CTGGGTCCATCTTCCACCTC 59.456 60.000 0.00 0.00 0.00 3.85
313 314 0.178876 TGGGTCCATCTTCCACCTCA 60.179 55.000 0.00 0.00 0.00 3.86
314 315 0.543749 GGGTCCATCTTCCACCTCAG 59.456 60.000 0.00 0.00 0.00 3.35
315 316 0.107459 GGTCCATCTTCCACCTCAGC 60.107 60.000 0.00 0.00 0.00 4.26
316 317 0.615331 GTCCATCTTCCACCTCAGCA 59.385 55.000 0.00 0.00 0.00 4.41
317 318 1.211457 GTCCATCTTCCACCTCAGCAT 59.789 52.381 0.00 0.00 0.00 3.79
318 319 2.435805 GTCCATCTTCCACCTCAGCATA 59.564 50.000 0.00 0.00 0.00 3.14
319 320 2.435805 TCCATCTTCCACCTCAGCATAC 59.564 50.000 0.00 0.00 0.00 2.39
320 321 2.437281 CCATCTTCCACCTCAGCATACT 59.563 50.000 0.00 0.00 0.00 2.12
321 322 3.464907 CATCTTCCACCTCAGCATACTG 58.535 50.000 0.00 0.00 45.95 2.74
322 323 2.540383 TCTTCCACCTCAGCATACTGT 58.460 47.619 0.00 0.00 44.77 3.55
323 324 2.497675 TCTTCCACCTCAGCATACTGTC 59.502 50.000 0.00 0.00 44.77 3.51
324 325 1.195115 TCCACCTCAGCATACTGTCC 58.805 55.000 0.00 0.00 44.77 4.02
325 326 0.904649 CCACCTCAGCATACTGTCCA 59.095 55.000 0.00 0.00 44.77 4.02
326 327 1.487976 CCACCTCAGCATACTGTCCAT 59.512 52.381 0.00 0.00 44.77 3.41
327 328 2.558378 CACCTCAGCATACTGTCCATG 58.442 52.381 0.00 0.00 44.77 3.66
328 329 2.093288 CACCTCAGCATACTGTCCATGT 60.093 50.000 0.00 0.00 44.77 3.21
329 330 3.132824 CACCTCAGCATACTGTCCATGTA 59.867 47.826 0.00 0.00 44.77 2.29
330 331 3.386078 ACCTCAGCATACTGTCCATGTAG 59.614 47.826 0.00 0.00 44.77 2.74
331 332 3.244009 CCTCAGCATACTGTCCATGTAGG 60.244 52.174 0.00 0.00 44.77 3.18
332 333 3.638627 CTCAGCATACTGTCCATGTAGGA 59.361 47.826 0.00 0.00 44.77 2.94
343 344 4.149511 TCCATGTAGGAATGCGAAATCA 57.850 40.909 0.00 0.00 45.65 2.57
344 345 4.129380 TCCATGTAGGAATGCGAAATCAG 58.871 43.478 0.00 0.00 45.65 2.90
345 346 3.304257 CCATGTAGGAATGCGAAATCAGC 60.304 47.826 0.00 0.00 41.22 4.26
346 347 2.288666 TGTAGGAATGCGAAATCAGCC 58.711 47.619 0.00 0.00 0.00 4.85
347 348 2.092968 TGTAGGAATGCGAAATCAGCCT 60.093 45.455 0.00 0.00 0.00 4.58
348 349 1.386533 AGGAATGCGAAATCAGCCTG 58.613 50.000 0.00 0.00 0.00 4.85
349 350 1.065199 AGGAATGCGAAATCAGCCTGA 60.065 47.619 0.00 0.00 0.00 3.86
350 351 1.064654 GGAATGCGAAATCAGCCTGAC 59.935 52.381 0.00 0.00 0.00 3.51
351 352 1.739466 GAATGCGAAATCAGCCTGACA 59.261 47.619 0.00 0.00 0.00 3.58
352 353 2.048444 ATGCGAAATCAGCCTGACAT 57.952 45.000 0.00 0.00 0.00 3.06
353 354 1.089112 TGCGAAATCAGCCTGACATG 58.911 50.000 0.00 0.00 0.00 3.21
354 355 1.089920 GCGAAATCAGCCTGACATGT 58.910 50.000 0.00 0.00 0.00 3.21
355 356 1.202110 GCGAAATCAGCCTGACATGTG 60.202 52.381 1.15 0.00 0.00 3.21
356 357 1.399440 CGAAATCAGCCTGACATGTGG 59.601 52.381 1.15 0.00 0.00 4.17
357 358 1.747355 GAAATCAGCCTGACATGTGGG 59.253 52.381 1.15 6.58 0.00 4.61
358 359 0.033796 AATCAGCCTGACATGTGGGG 60.034 55.000 1.15 6.17 0.00 4.96
359 360 1.210204 ATCAGCCTGACATGTGGGGT 61.210 55.000 1.15 8.27 0.00 4.95
360 361 1.377725 CAGCCTGACATGTGGGGTC 60.378 63.158 1.15 1.94 35.83 4.46
361 362 1.847506 AGCCTGACATGTGGGGTCA 60.848 57.895 1.15 0.00 42.62 4.02
362 363 1.074775 GCCTGACATGTGGGGTCAA 59.925 57.895 1.15 0.00 44.04 3.18
363 364 1.244019 GCCTGACATGTGGGGTCAAC 61.244 60.000 1.15 0.00 44.04 3.18
364 365 0.609131 CCTGACATGTGGGGTCAACC 60.609 60.000 1.15 0.00 44.04 3.77
365 366 0.110295 CTGACATGTGGGGTCAACCA 59.890 55.000 1.15 0.00 44.04 3.67
366 367 0.110295 TGACATGTGGGGTCAACCAG 59.890 55.000 1.15 0.00 41.96 4.00
367 368 0.110486 GACATGTGGGGTCAACCAGT 59.890 55.000 1.15 0.00 42.20 4.00
368 369 0.110486 ACATGTGGGGTCAACCAGTC 59.890 55.000 0.00 0.00 42.20 3.51
369 370 0.110295 CATGTGGGGTCAACCAGTCA 59.890 55.000 0.89 0.00 42.20 3.41
370 371 0.401738 ATGTGGGGTCAACCAGTCAG 59.598 55.000 0.89 0.00 42.20 3.51
371 372 0.986019 TGTGGGGTCAACCAGTCAGT 60.986 55.000 0.89 0.00 42.20 3.41
372 373 0.182775 GTGGGGTCAACCAGTCAGTT 59.817 55.000 0.89 0.00 42.20 3.16
373 374 0.923358 TGGGGTCAACCAGTCAGTTT 59.077 50.000 0.89 0.00 42.91 2.66
374 375 1.286553 TGGGGTCAACCAGTCAGTTTT 59.713 47.619 0.89 0.00 42.91 2.43
375 376 2.510382 TGGGGTCAACCAGTCAGTTTTA 59.490 45.455 0.89 0.00 42.91 1.52
376 377 2.882761 GGGGTCAACCAGTCAGTTTTAC 59.117 50.000 0.89 0.00 42.91 2.01
377 378 3.434596 GGGGTCAACCAGTCAGTTTTACT 60.435 47.826 0.89 0.00 42.91 2.24
378 379 3.564225 GGGTCAACCAGTCAGTTTTACTG 59.436 47.826 0.89 0.40 42.68 2.74
379 380 3.003378 GGTCAACCAGTCAGTTTTACTGC 59.997 47.826 1.98 0.00 42.47 4.40
380 381 3.877508 GTCAACCAGTCAGTTTTACTGCT 59.122 43.478 1.98 0.93 45.54 4.24
381 382 5.054477 GTCAACCAGTCAGTTTTACTGCTA 58.946 41.667 1.98 0.00 45.54 3.49
382 383 5.177696 GTCAACCAGTCAGTTTTACTGCTAG 59.822 44.000 1.98 0.00 45.54 3.42
383 384 5.069914 TCAACCAGTCAGTTTTACTGCTAGA 59.930 40.000 0.00 0.00 45.54 2.43
384 385 4.884247 ACCAGTCAGTTTTACTGCTAGAC 58.116 43.478 0.00 0.00 45.54 2.59
385 386 4.344102 ACCAGTCAGTTTTACTGCTAGACA 59.656 41.667 0.00 0.00 45.54 3.41
386 387 4.686554 CCAGTCAGTTTTACTGCTAGACAC 59.313 45.833 0.00 0.00 45.54 3.67
387 388 4.383052 CAGTCAGTTTTACTGCTAGACACG 59.617 45.833 0.00 0.00 45.54 4.49
388 389 3.673809 GTCAGTTTTACTGCTAGACACGG 59.326 47.826 0.00 0.00 45.54 4.94
389 390 2.412089 CAGTTTTACTGCTAGACACGGC 59.588 50.000 0.00 0.00 39.62 5.68
390 391 2.299297 AGTTTTACTGCTAGACACGGCT 59.701 45.455 0.00 0.00 0.00 5.52
391 392 3.064931 GTTTTACTGCTAGACACGGCTT 58.935 45.455 0.00 0.00 0.00 4.35
392 393 4.021719 AGTTTTACTGCTAGACACGGCTTA 60.022 41.667 0.00 0.00 0.00 3.09
393 394 3.498927 TTACTGCTAGACACGGCTTAC 57.501 47.619 0.00 0.00 0.00 2.34
394 395 1.546961 ACTGCTAGACACGGCTTACT 58.453 50.000 0.00 0.00 0.00 2.24
395 396 1.893801 ACTGCTAGACACGGCTTACTT 59.106 47.619 0.00 0.00 0.00 2.24
396 397 2.299297 ACTGCTAGACACGGCTTACTTT 59.701 45.455 0.00 0.00 0.00 2.66
397 398 3.244112 ACTGCTAGACACGGCTTACTTTT 60.244 43.478 0.00 0.00 0.00 2.27
398 399 3.064207 TGCTAGACACGGCTTACTTTTG 58.936 45.455 0.00 0.00 0.00 2.44
399 400 3.243941 TGCTAGACACGGCTTACTTTTGA 60.244 43.478 0.00 0.00 0.00 2.69
400 401 3.744426 GCTAGACACGGCTTACTTTTGAA 59.256 43.478 0.00 0.00 0.00 2.69
401 402 4.392138 GCTAGACACGGCTTACTTTTGAAT 59.608 41.667 0.00 0.00 0.00 2.57
402 403 5.446073 GCTAGACACGGCTTACTTTTGAATC 60.446 44.000 0.00 0.00 0.00 2.52
403 404 3.432252 AGACACGGCTTACTTTTGAATCG 59.568 43.478 0.00 0.00 0.00 3.34
404 405 2.482721 ACACGGCTTACTTTTGAATCGG 59.517 45.455 0.00 0.00 0.00 4.18
405 406 2.482721 CACGGCTTACTTTTGAATCGGT 59.517 45.455 0.00 0.00 0.00 4.69
406 407 2.482721 ACGGCTTACTTTTGAATCGGTG 59.517 45.455 0.00 0.00 0.00 4.94
407 408 2.482721 CGGCTTACTTTTGAATCGGTGT 59.517 45.455 0.00 0.00 0.00 4.16
408 409 3.666902 CGGCTTACTTTTGAATCGGTGTG 60.667 47.826 0.00 0.00 0.00 3.82
409 410 3.500680 GGCTTACTTTTGAATCGGTGTGA 59.499 43.478 0.00 0.00 0.00 3.58
410 411 4.156008 GGCTTACTTTTGAATCGGTGTGAT 59.844 41.667 0.00 0.00 39.67 3.06
448 449 3.952535 GCAAAAGTGGCGGTCTTATATG 58.047 45.455 0.00 0.00 0.00 1.78
462 463 7.254084 GCGGTCTTATATGATTTTTGGCAAAAG 60.254 37.037 23.03 10.24 35.30 2.27
463 464 7.759433 CGGTCTTATATGATTTTTGGCAAAAGT 59.241 33.333 23.03 21.04 35.30 2.66
473 474 5.557891 TTTTGGCAAAAGTGATGGTTTTG 57.442 34.783 20.81 4.32 44.37 2.44
481 482 6.311200 GCAAAAGTGATGGTTTTGACATATCC 59.689 38.462 11.49 0.00 44.33 2.59
499 500 7.114754 ACATATCCTAGCCACAAATATGATGG 58.885 38.462 7.46 0.00 35.08 3.51
516 517 9.590451 AATATGATGGTTTTGAGCAATTTACTG 57.410 29.630 0.00 0.00 0.00 2.74
520 956 5.983540 TGGTTTTGAGCAATTTACTGGTTT 58.016 33.333 0.00 0.00 0.00 3.27
548 984 2.163818 TCACGTGGATCCTTGTGTTC 57.836 50.000 26.05 5.66 34.08 3.18
557 993 6.337356 GTGGATCCTTGTGTTCAAAGAAAAA 58.663 36.000 14.23 0.00 32.87 1.94
573 1009 8.930760 TCAAAGAAAAATATGCCAAATAAACCG 58.069 29.630 0.00 0.00 0.00 4.44
601 1037 0.824759 ACGATTAGGAGGAGGTGCAC 59.175 55.000 8.80 8.80 0.00 4.57
605 1041 0.911769 TTAGGAGGAGGTGCACATGG 59.088 55.000 20.43 0.00 0.00 3.66
619 1055 4.158394 GTGCACATGGATTAATTGTGTCCT 59.842 41.667 13.17 0.00 42.11 3.85
636 1072 4.020128 GTGTCCTTACCTTTCTCCATGACT 60.020 45.833 0.00 0.00 0.00 3.41
637 1073 4.020218 TGTCCTTACCTTTCTCCATGACTG 60.020 45.833 0.00 0.00 0.00 3.51
665 1101 4.864806 TGCAACATCTTCGTAATCACTCTC 59.135 41.667 0.00 0.00 0.00 3.20
678 1114 8.194769 TCGTAATCACTCTCAACATATTAAGCA 58.805 33.333 0.00 0.00 0.00 3.91
719 1155 5.099575 ACAAGAACAAATTCGTCAAACACC 58.900 37.500 0.00 0.00 40.04 4.16
770 1206 0.245539 CAACCTTCTTCCGGCGAGTA 59.754 55.000 9.30 0.00 0.00 2.59
855 1296 1.860950 GACGCTGACGCACATAATCAT 59.139 47.619 0.00 0.00 45.53 2.45
997 1476 3.292460 AGAGGAAGAGATCGGTCGAAAT 58.708 45.455 0.00 0.00 0.00 2.17
1554 2039 0.598065 TCGGCGTGATGATCATCGAT 59.402 50.000 26.52 0.00 40.63 3.59
1768 2267 9.588096 AATTGGATCTCCTTTAACAGTTTAACT 57.412 29.630 0.00 0.00 36.82 2.24
1770 2269 9.720769 TTGGATCTCCTTTAACAGTTTAACTAG 57.279 33.333 0.00 0.00 36.82 2.57
1771 2270 8.877195 TGGATCTCCTTTAACAGTTTAACTAGT 58.123 33.333 0.00 0.00 36.82 2.57
1772 2271 9.368674 GGATCTCCTTTAACAGTTTAACTAGTC 57.631 37.037 0.00 0.00 0.00 2.59
1844 2343 5.195001 TGAGTAAATTGCAAGAAACCACC 57.805 39.130 4.94 0.00 0.00 4.61
1852 2351 2.762887 TGCAAGAAACCACCACATTGAA 59.237 40.909 0.00 0.00 0.00 2.69
1911 2410 4.264253 TGGCAGAAAACATCATGTCTAGG 58.736 43.478 0.00 0.00 0.00 3.02
1913 2412 4.574013 GGCAGAAAACATCATGTCTAGGAG 59.426 45.833 0.00 0.00 0.00 3.69
1915 2414 6.054295 GCAGAAAACATCATGTCTAGGAGAT 58.946 40.000 0.00 0.00 0.00 2.75
1916 2415 6.018098 GCAGAAAACATCATGTCTAGGAGATG 60.018 42.308 0.00 0.00 42.61 2.90
1917 2416 6.482641 CAGAAAACATCATGTCTAGGAGATGG 59.517 42.308 14.56 0.00 41.55 3.51
1918 2417 6.385176 AGAAAACATCATGTCTAGGAGATGGA 59.615 38.462 14.56 0.00 41.55 3.41
1920 2419 6.760440 AACATCATGTCTAGGAGATGGATT 57.240 37.500 14.56 3.79 41.55 3.01
1921 2420 7.862274 AACATCATGTCTAGGAGATGGATTA 57.138 36.000 14.56 0.00 41.55 1.75
1922 2421 7.479352 ACATCATGTCTAGGAGATGGATTAG 57.521 40.000 14.56 0.00 41.55 1.73
1923 2422 6.440010 ACATCATGTCTAGGAGATGGATTAGG 59.560 42.308 14.56 0.00 41.55 2.69
1924 2423 5.336945 TCATGTCTAGGAGATGGATTAGGG 58.663 45.833 5.14 0.00 34.64 3.53
1925 2424 4.834406 TGTCTAGGAGATGGATTAGGGT 57.166 45.455 0.00 0.00 0.00 4.34
1926 2425 4.742012 TGTCTAGGAGATGGATTAGGGTC 58.258 47.826 0.00 0.00 0.00 4.46
1927 2426 3.759618 GTCTAGGAGATGGATTAGGGTCG 59.240 52.174 0.00 0.00 0.00 4.79
1947 2446 4.549599 GTCGTTTGCAAATAACACTGATCG 59.450 41.667 16.21 9.91 0.00 3.69
1964 2463 1.153509 CGGCGGATTAGGGTCGTTT 60.154 57.895 0.00 0.00 0.00 3.60
1968 2467 1.287425 CGGATTAGGGTCGTTTGAGC 58.713 55.000 0.00 0.00 41.93 4.26
1979 2478 3.423123 GGTCGTTTGAGCGTGTTTATGAG 60.423 47.826 0.00 0.00 32.15 2.90
1995 2494 1.039785 TGAGAGATGGGGCTCACTCG 61.040 60.000 10.09 0.00 36.14 4.18
2053 2553 3.192633 GTGTTGACTCTTCCTCCTCTCTC 59.807 52.174 0.00 0.00 0.00 3.20
2054 2554 3.075283 TGTTGACTCTTCCTCCTCTCTCT 59.925 47.826 0.00 0.00 0.00 3.10
2570 3080 2.257371 CGACGCCGACTTCCTCAA 59.743 61.111 0.00 0.00 38.22 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.917760 CCTCCCATCTCCGGCGAC 61.918 72.222 9.30 0.00 0.00 5.19
23 24 4.778415 CTCCACCGTCGTGCTCCG 62.778 72.222 0.00 0.00 38.79 4.63
24 25 4.436998 CCTCCACCGTCGTGCTCC 62.437 72.222 0.00 0.00 38.79 4.70
25 26 2.267681 CTACCTCCACCGTCGTGCTC 62.268 65.000 0.00 0.00 38.79 4.26
26 27 2.282674 TACCTCCACCGTCGTGCT 60.283 61.111 0.00 0.00 38.79 4.40
27 28 2.181021 CTACCTCCACCGTCGTGC 59.819 66.667 0.00 0.00 38.79 5.34
28 29 1.654954 CCTCTACCTCCACCGTCGTG 61.655 65.000 0.00 0.00 39.91 4.35
29 30 1.378250 CCTCTACCTCCACCGTCGT 60.378 63.158 0.00 0.00 0.00 4.34
30 31 2.772691 GCCTCTACCTCCACCGTCG 61.773 68.421 0.00 0.00 0.00 5.12
31 32 2.772691 CGCCTCTACCTCCACCGTC 61.773 68.421 0.00 0.00 0.00 4.79
32 33 2.754658 CGCCTCTACCTCCACCGT 60.755 66.667 0.00 0.00 0.00 4.83
33 34 2.754658 ACGCCTCTACCTCCACCG 60.755 66.667 0.00 0.00 0.00 4.94
34 35 2.424733 GGACGCCTCTACCTCCACC 61.425 68.421 0.00 0.00 0.00 4.61
35 36 2.424733 GGGACGCCTCTACCTCCAC 61.425 68.421 0.00 0.00 0.00 4.02
36 37 2.043248 GGGACGCCTCTACCTCCA 60.043 66.667 0.00 0.00 0.00 3.86
37 38 2.128507 CAGGGACGCCTCTACCTCC 61.129 68.421 0.00 0.00 0.00 4.30
38 39 2.787567 GCAGGGACGCCTCTACCTC 61.788 68.421 0.00 0.00 0.00 3.85
39 40 2.760385 GCAGGGACGCCTCTACCT 60.760 66.667 0.00 0.00 0.00 3.08
40 41 4.208686 CGCAGGGACGCCTCTACC 62.209 72.222 0.00 0.00 0.00 3.18
67 68 4.864334 CACCTGATCGGCCTGCCC 62.864 72.222 0.00 0.00 35.61 5.36
68 69 3.112205 ATCACCTGATCGGCCTGCC 62.112 63.158 0.00 0.00 35.61 4.85
69 70 1.890979 CATCACCTGATCGGCCTGC 60.891 63.158 0.00 0.00 35.61 4.85
70 71 1.890979 GCATCACCTGATCGGCCTG 60.891 63.158 0.00 0.00 35.61 4.85
71 72 2.507944 GCATCACCTGATCGGCCT 59.492 61.111 0.00 0.00 35.61 5.19
72 73 2.969238 CGCATCACCTGATCGGCC 60.969 66.667 0.00 0.00 35.61 6.13
73 74 2.106938 TCGCATCACCTGATCGGC 59.893 61.111 0.00 0.00 35.61 5.54
74 75 0.873312 CAGTCGCATCACCTGATCGG 60.873 60.000 0.00 0.00 39.35 4.18
75 76 0.873312 CCAGTCGCATCACCTGATCG 60.873 60.000 0.00 0.00 31.21 3.69
76 77 0.531532 CCCAGTCGCATCACCTGATC 60.532 60.000 0.00 0.00 31.21 2.92
77 78 1.524002 CCCAGTCGCATCACCTGAT 59.476 57.895 0.00 0.00 34.56 2.90
78 79 2.981302 CCCAGTCGCATCACCTGA 59.019 61.111 0.00 0.00 0.00 3.86
79 80 2.821366 GCCCAGTCGCATCACCTG 60.821 66.667 0.00 0.00 0.00 4.00
80 81 3.005539 AGCCCAGTCGCATCACCT 61.006 61.111 0.00 0.00 0.00 4.00
81 82 2.803155 TTCAGCCCAGTCGCATCACC 62.803 60.000 0.00 0.00 0.00 4.02
82 83 1.364626 CTTCAGCCCAGTCGCATCAC 61.365 60.000 0.00 0.00 0.00 3.06
83 84 1.078918 CTTCAGCCCAGTCGCATCA 60.079 57.895 0.00 0.00 0.00 3.07
84 85 0.391661 TTCTTCAGCCCAGTCGCATC 60.392 55.000 0.00 0.00 0.00 3.91
85 86 0.036732 TTTCTTCAGCCCAGTCGCAT 59.963 50.000 0.00 0.00 0.00 4.73
86 87 0.603707 CTTTCTTCAGCCCAGTCGCA 60.604 55.000 0.00 0.00 0.00 5.10
87 88 1.301677 CCTTTCTTCAGCCCAGTCGC 61.302 60.000 0.00 0.00 0.00 5.19
88 89 0.035458 ACCTTTCTTCAGCCCAGTCG 59.965 55.000 0.00 0.00 0.00 4.18
89 90 1.528129 CACCTTTCTTCAGCCCAGTC 58.472 55.000 0.00 0.00 0.00 3.51
90 91 0.111253 CCACCTTTCTTCAGCCCAGT 59.889 55.000 0.00 0.00 0.00 4.00
91 92 1.246737 GCCACCTTTCTTCAGCCCAG 61.247 60.000 0.00 0.00 0.00 4.45
92 93 1.228552 GCCACCTTTCTTCAGCCCA 60.229 57.895 0.00 0.00 0.00 5.36
93 94 1.075659 AGCCACCTTTCTTCAGCCC 59.924 57.895 0.00 0.00 0.00 5.19
94 95 1.246737 CCAGCCACCTTTCTTCAGCC 61.247 60.000 0.00 0.00 0.00 4.85
95 96 0.538287 ACCAGCCACCTTTCTTCAGC 60.538 55.000 0.00 0.00 0.00 4.26
96 97 1.242076 CACCAGCCACCTTTCTTCAG 58.758 55.000 0.00 0.00 0.00 3.02
97 98 0.178992 CCACCAGCCACCTTTCTTCA 60.179 55.000 0.00 0.00 0.00 3.02
98 99 1.527433 GCCACCAGCCACCTTTCTTC 61.527 60.000 0.00 0.00 34.35 2.87
99 100 1.531602 GCCACCAGCCACCTTTCTT 60.532 57.895 0.00 0.00 34.35 2.52
100 101 2.116125 GCCACCAGCCACCTTTCT 59.884 61.111 0.00 0.00 34.35 2.52
109 110 2.825836 CCAGATTCGGCCACCAGC 60.826 66.667 2.24 0.00 42.60 4.85
136 137 2.539081 AAACAGGGGGAGGAGCACC 61.539 63.158 0.00 0.00 40.39 5.01
137 138 1.303643 CAAACAGGGGGAGGAGCAC 60.304 63.158 0.00 0.00 0.00 4.40
138 139 1.463214 TCAAACAGGGGGAGGAGCA 60.463 57.895 0.00 0.00 0.00 4.26
139 140 1.002011 GTCAAACAGGGGGAGGAGC 60.002 63.158 0.00 0.00 0.00 4.70
140 141 0.842467 AGGTCAAACAGGGGGAGGAG 60.842 60.000 0.00 0.00 0.00 3.69
141 142 0.840722 GAGGTCAAACAGGGGGAGGA 60.841 60.000 0.00 0.00 0.00 3.71
142 143 1.685820 GAGGTCAAACAGGGGGAGG 59.314 63.158 0.00 0.00 0.00 4.30
143 144 1.296715 CGAGGTCAAACAGGGGGAG 59.703 63.158 0.00 0.00 0.00 4.30
144 145 2.890766 GCGAGGTCAAACAGGGGGA 61.891 63.158 0.00 0.00 0.00 4.81
145 146 2.359975 GCGAGGTCAAACAGGGGG 60.360 66.667 0.00 0.00 0.00 5.40
146 147 2.359975 GGCGAGGTCAAACAGGGG 60.360 66.667 0.00 0.00 0.00 4.79
147 148 2.742372 CGGCGAGGTCAAACAGGG 60.742 66.667 0.00 0.00 0.00 4.45
148 149 2.027625 GACGGCGAGGTCAAACAGG 61.028 63.158 16.62 0.00 36.91 4.00
149 150 2.372690 CGACGGCGAGGTCAAACAG 61.373 63.158 16.62 0.00 40.82 3.16
150 151 2.355363 CGACGGCGAGGTCAAACA 60.355 61.111 16.62 0.00 40.82 2.83
151 152 3.110178 CCGACGGCGAGGTCAAAC 61.110 66.667 15.16 0.00 40.82 2.93
162 163 2.190841 AACACCAAAAGGCCGACGG 61.191 57.895 10.29 10.29 0.00 4.79
163 164 1.008995 CAACACCAAAAGGCCGACG 60.009 57.895 0.00 0.00 0.00 5.12
164 165 1.265905 CTACAACACCAAAAGGCCGAC 59.734 52.381 0.00 0.00 0.00 4.79
165 166 1.600023 CTACAACACCAAAAGGCCGA 58.400 50.000 0.00 0.00 0.00 5.54
166 167 0.596082 CCTACAACACCAAAAGGCCG 59.404 55.000 0.00 0.00 0.00 6.13
167 168 1.699730 ACCTACAACACCAAAAGGCC 58.300 50.000 0.00 0.00 0.00 5.19
168 169 3.252458 CACTACCTACAACACCAAAAGGC 59.748 47.826 0.00 0.00 0.00 4.35
169 170 3.818773 CCACTACCTACAACACCAAAAGG 59.181 47.826 0.00 0.00 0.00 3.11
170 171 3.818773 CCCACTACCTACAACACCAAAAG 59.181 47.826 0.00 0.00 0.00 2.27
171 172 3.822940 CCCACTACCTACAACACCAAAA 58.177 45.455 0.00 0.00 0.00 2.44
172 173 2.487625 GCCCACTACCTACAACACCAAA 60.488 50.000 0.00 0.00 0.00 3.28
173 174 1.072648 GCCCACTACCTACAACACCAA 59.927 52.381 0.00 0.00 0.00 3.67
174 175 0.688487 GCCCACTACCTACAACACCA 59.312 55.000 0.00 0.00 0.00 4.17
175 176 0.390735 CGCCCACTACCTACAACACC 60.391 60.000 0.00 0.00 0.00 4.16
176 177 0.390735 CCGCCCACTACCTACAACAC 60.391 60.000 0.00 0.00 0.00 3.32
177 178 1.976898 CCGCCCACTACCTACAACA 59.023 57.895 0.00 0.00 0.00 3.33
178 179 1.449070 GCCGCCCACTACCTACAAC 60.449 63.158 0.00 0.00 0.00 3.32
179 180 2.983791 GCCGCCCACTACCTACAA 59.016 61.111 0.00 0.00 0.00 2.41
180 181 3.454573 CGCCGCCCACTACCTACA 61.455 66.667 0.00 0.00 0.00 2.74
181 182 4.217159 CCGCCGCCCACTACCTAC 62.217 72.222 0.00 0.00 0.00 3.18
196 197 4.135153 CACTGACTCCTCCCGCCG 62.135 72.222 0.00 0.00 0.00 6.46
197 198 4.459089 GCACTGACTCCTCCCGCC 62.459 72.222 0.00 0.00 0.00 6.13
198 199 4.803426 CGCACTGACTCCTCCCGC 62.803 72.222 0.00 0.00 0.00 6.13
199 200 3.057547 CTCGCACTGACTCCTCCCG 62.058 68.421 0.00 0.00 0.00 5.14
200 201 2.716017 CCTCGCACTGACTCCTCCC 61.716 68.421 0.00 0.00 0.00 4.30
201 202 2.716017 CCCTCGCACTGACTCCTCC 61.716 68.421 0.00 0.00 0.00 4.30
202 203 2.716017 CCCCTCGCACTGACTCCTC 61.716 68.421 0.00 0.00 0.00 3.71
203 204 2.681778 CCCCTCGCACTGACTCCT 60.682 66.667 0.00 0.00 0.00 3.69
204 205 3.775654 CCCCCTCGCACTGACTCC 61.776 72.222 0.00 0.00 0.00 3.85
218 219 2.041405 CTCCACCTCCTCTCCCCC 60.041 72.222 0.00 0.00 0.00 5.40
219 220 2.041405 CCTCCACCTCCTCTCCCC 60.041 72.222 0.00 0.00 0.00 4.81
220 221 1.075600 CTCCTCCACCTCCTCTCCC 60.076 68.421 0.00 0.00 0.00 4.30
221 222 1.075600 CCTCCTCCACCTCCTCTCC 60.076 68.421 0.00 0.00 0.00 3.71
222 223 0.336737 TTCCTCCTCCACCTCCTCTC 59.663 60.000 0.00 0.00 0.00 3.20
223 224 0.793617 TTTCCTCCTCCACCTCCTCT 59.206 55.000 0.00 0.00 0.00 3.69
224 225 1.557371 CTTTTCCTCCTCCACCTCCTC 59.443 57.143 0.00 0.00 0.00 3.71
225 226 1.662686 CTTTTCCTCCTCCACCTCCT 58.337 55.000 0.00 0.00 0.00 3.69
226 227 0.621082 CCTTTTCCTCCTCCACCTCC 59.379 60.000 0.00 0.00 0.00 4.30
227 228 0.621082 CCCTTTTCCTCCTCCACCTC 59.379 60.000 0.00 0.00 0.00 3.85
228 229 0.846870 CCCCTTTTCCTCCTCCACCT 60.847 60.000 0.00 0.00 0.00 4.00
229 230 1.691823 CCCCTTTTCCTCCTCCACC 59.308 63.158 0.00 0.00 0.00 4.61
230 231 0.845102 TCCCCCTTTTCCTCCTCCAC 60.845 60.000 0.00 0.00 0.00 4.02
231 232 0.103608 TTCCCCCTTTTCCTCCTCCA 60.104 55.000 0.00 0.00 0.00 3.86
232 233 0.626382 CTTCCCCCTTTTCCTCCTCC 59.374 60.000 0.00 0.00 0.00 4.30
233 234 1.670059 TCTTCCCCCTTTTCCTCCTC 58.330 55.000 0.00 0.00 0.00 3.71
234 235 1.996291 CTTCTTCCCCCTTTTCCTCCT 59.004 52.381 0.00 0.00 0.00 3.69
235 236 1.993301 TCTTCTTCCCCCTTTTCCTCC 59.007 52.381 0.00 0.00 0.00 4.30
236 237 3.330998 TCTTCTTCTTCCCCCTTTTCCTC 59.669 47.826 0.00 0.00 0.00 3.71
237 238 3.336676 TCTTCTTCTTCCCCCTTTTCCT 58.663 45.455 0.00 0.00 0.00 3.36
238 239 3.808834 TCTTCTTCTTCCCCCTTTTCC 57.191 47.619 0.00 0.00 0.00 3.13
239 240 6.479972 TTTTTCTTCTTCTTCCCCCTTTTC 57.520 37.500 0.00 0.00 0.00 2.29
262 263 4.411013 CTCCCATCTCCTTTCACCTTTTT 58.589 43.478 0.00 0.00 0.00 1.94
263 264 3.245407 CCTCCCATCTCCTTTCACCTTTT 60.245 47.826 0.00 0.00 0.00 2.27
264 265 2.310052 CCTCCCATCTCCTTTCACCTTT 59.690 50.000 0.00 0.00 0.00 3.11
265 266 1.918957 CCTCCCATCTCCTTTCACCTT 59.081 52.381 0.00 0.00 0.00 3.50
266 267 1.589414 CCTCCCATCTCCTTTCACCT 58.411 55.000 0.00 0.00 0.00 4.00
267 268 0.106967 GCCTCCCATCTCCTTTCACC 60.107 60.000 0.00 0.00 0.00 4.02
268 269 0.915364 AGCCTCCCATCTCCTTTCAC 59.085 55.000 0.00 0.00 0.00 3.18
269 270 0.914644 CAGCCTCCCATCTCCTTTCA 59.085 55.000 0.00 0.00 0.00 2.69
270 271 1.134250 GTCAGCCTCCCATCTCCTTTC 60.134 57.143 0.00 0.00 0.00 2.62
271 272 0.915364 GTCAGCCTCCCATCTCCTTT 59.085 55.000 0.00 0.00 0.00 3.11
272 273 0.252881 TGTCAGCCTCCCATCTCCTT 60.253 55.000 0.00 0.00 0.00 3.36
273 274 0.690411 CTGTCAGCCTCCCATCTCCT 60.690 60.000 0.00 0.00 0.00 3.69
274 275 1.828768 CTGTCAGCCTCCCATCTCC 59.171 63.158 0.00 0.00 0.00 3.71
275 276 1.145819 GCTGTCAGCCTCCCATCTC 59.854 63.158 14.27 0.00 34.48 2.75
276 277 1.306825 AGCTGTCAGCCTCCCATCT 60.307 57.895 21.32 0.00 43.77 2.90
277 278 1.153208 CAGCTGTCAGCCTCCCATC 60.153 63.158 21.32 0.00 43.77 3.51
278 279 2.677289 CCAGCTGTCAGCCTCCCAT 61.677 63.158 21.32 0.00 43.77 4.00
279 280 3.324930 CCAGCTGTCAGCCTCCCA 61.325 66.667 21.32 0.00 43.77 4.37
280 281 4.106925 CCCAGCTGTCAGCCTCCC 62.107 72.222 21.32 0.00 43.77 4.30
281 282 3.322318 GACCCAGCTGTCAGCCTCC 62.322 68.421 21.32 3.15 43.77 4.30
282 283 2.267324 GACCCAGCTGTCAGCCTC 59.733 66.667 21.32 7.35 43.77 4.70
283 284 3.325753 GGACCCAGCTGTCAGCCT 61.326 66.667 21.32 6.11 43.77 4.58
284 285 2.883267 GATGGACCCAGCTGTCAGCC 62.883 65.000 21.32 8.92 43.77 4.85
285 286 1.451028 GATGGACCCAGCTGTCAGC 60.451 63.158 17.48 17.48 42.84 4.26
286 287 0.617413 AAGATGGACCCAGCTGTCAG 59.383 55.000 13.81 3.42 42.29 3.51
287 288 0.615331 GAAGATGGACCCAGCTGTCA 59.385 55.000 13.81 5.90 42.29 3.58
288 289 0.107459 GGAAGATGGACCCAGCTGTC 60.107 60.000 13.81 4.21 42.29 3.51
289 290 0.842030 TGGAAGATGGACCCAGCTGT 60.842 55.000 13.81 0.00 42.29 4.40
290 291 0.393537 GTGGAAGATGGACCCAGCTG 60.394 60.000 6.78 6.78 42.29 4.24
291 292 1.566298 GGTGGAAGATGGACCCAGCT 61.566 60.000 0.21 0.21 45.31 4.24
292 293 1.077429 GGTGGAAGATGGACCCAGC 60.077 63.158 0.00 0.00 40.60 4.85
293 294 0.543749 GAGGTGGAAGATGGACCCAG 59.456 60.000 0.00 0.00 0.00 4.45
294 295 0.178876 TGAGGTGGAAGATGGACCCA 60.179 55.000 0.00 0.00 0.00 4.51
295 296 0.543749 CTGAGGTGGAAGATGGACCC 59.456 60.000 0.00 0.00 0.00 4.46
296 297 0.107459 GCTGAGGTGGAAGATGGACC 60.107 60.000 0.00 0.00 0.00 4.46
297 298 0.615331 TGCTGAGGTGGAAGATGGAC 59.385 55.000 0.00 0.00 0.00 4.02
298 299 1.588239 ATGCTGAGGTGGAAGATGGA 58.412 50.000 0.00 0.00 0.00 3.41
299 300 2.437281 AGTATGCTGAGGTGGAAGATGG 59.563 50.000 0.00 0.00 0.00 3.51
300 301 3.118482 ACAGTATGCTGAGGTGGAAGATG 60.118 47.826 18.40 0.00 45.28 2.90
301 302 3.110705 ACAGTATGCTGAGGTGGAAGAT 58.889 45.455 18.40 0.00 45.28 2.40
302 303 2.497675 GACAGTATGCTGAGGTGGAAGA 59.502 50.000 18.40 0.00 45.28 2.87
303 304 2.419297 GGACAGTATGCTGAGGTGGAAG 60.419 54.545 18.40 0.00 45.28 3.46
304 305 1.555075 GGACAGTATGCTGAGGTGGAA 59.445 52.381 18.40 0.00 45.28 3.53
305 306 1.195115 GGACAGTATGCTGAGGTGGA 58.805 55.000 18.40 0.00 45.28 4.02
306 307 0.904649 TGGACAGTATGCTGAGGTGG 59.095 55.000 18.40 0.00 45.28 4.61
307 308 2.093288 ACATGGACAGTATGCTGAGGTG 60.093 50.000 18.40 11.98 45.28 4.00
308 309 2.191400 ACATGGACAGTATGCTGAGGT 58.809 47.619 18.40 0.00 45.28 3.85
309 310 2.996249 ACATGGACAGTATGCTGAGG 57.004 50.000 18.40 0.00 45.28 3.86
310 311 3.638627 TCCTACATGGACAGTATGCTGAG 59.361 47.826 18.40 2.26 41.64 3.35
311 312 3.642141 TCCTACATGGACAGTATGCTGA 58.358 45.455 18.40 0.00 41.64 4.26
312 313 4.406648 TTCCTACATGGACAGTATGCTG 57.593 45.455 9.50 9.50 46.14 4.41
313 314 4.744867 GCATTCCTACATGGACAGTATGCT 60.745 45.833 10.21 0.00 45.24 3.79
314 315 3.499918 GCATTCCTACATGGACAGTATGC 59.500 47.826 0.00 0.00 46.14 3.14
315 316 3.742882 CGCATTCCTACATGGACAGTATG 59.257 47.826 0.00 0.00 46.14 2.39
316 317 3.641436 TCGCATTCCTACATGGACAGTAT 59.359 43.478 0.00 0.00 46.14 2.12
317 318 3.028130 TCGCATTCCTACATGGACAGTA 58.972 45.455 0.00 0.00 46.14 2.74
318 319 1.831106 TCGCATTCCTACATGGACAGT 59.169 47.619 0.00 0.00 46.14 3.55
319 320 2.602257 TCGCATTCCTACATGGACAG 57.398 50.000 0.00 0.00 46.14 3.51
320 321 3.342377 TTTCGCATTCCTACATGGACA 57.658 42.857 0.00 0.00 46.14 4.02
321 322 3.876914 TGATTTCGCATTCCTACATGGAC 59.123 43.478 0.00 0.00 46.14 4.02
322 323 4.129380 CTGATTTCGCATTCCTACATGGA 58.871 43.478 0.00 0.00 44.51 3.41
323 324 3.304257 GCTGATTTCGCATTCCTACATGG 60.304 47.826 0.00 0.00 37.10 3.66
324 325 3.304257 GGCTGATTTCGCATTCCTACATG 60.304 47.826 0.00 0.00 0.00 3.21
325 326 2.880890 GGCTGATTTCGCATTCCTACAT 59.119 45.455 0.00 0.00 0.00 2.29
326 327 2.092968 AGGCTGATTTCGCATTCCTACA 60.093 45.455 0.00 0.00 0.00 2.74
327 328 2.289002 CAGGCTGATTTCGCATTCCTAC 59.711 50.000 9.42 0.00 0.00 3.18
328 329 2.170397 TCAGGCTGATTTCGCATTCCTA 59.830 45.455 14.43 0.00 0.00 2.94
329 330 1.065199 TCAGGCTGATTTCGCATTCCT 60.065 47.619 14.43 0.00 0.00 3.36
330 331 1.064654 GTCAGGCTGATTTCGCATTCC 59.935 52.381 21.84 0.00 0.00 3.01
331 332 1.739466 TGTCAGGCTGATTTCGCATTC 59.261 47.619 21.84 4.73 0.00 2.67
332 333 1.825090 TGTCAGGCTGATTTCGCATT 58.175 45.000 21.84 0.00 0.00 3.56
333 334 1.674441 CATGTCAGGCTGATTTCGCAT 59.326 47.619 21.84 15.42 0.00 4.73
334 335 1.089112 CATGTCAGGCTGATTTCGCA 58.911 50.000 21.84 13.70 0.00 5.10
335 336 1.089920 ACATGTCAGGCTGATTTCGC 58.910 50.000 21.84 7.82 0.00 4.70
336 337 1.399440 CCACATGTCAGGCTGATTTCG 59.601 52.381 21.84 11.98 0.00 3.46
337 338 1.747355 CCCACATGTCAGGCTGATTTC 59.253 52.381 21.84 8.62 0.00 2.17
338 339 1.617804 CCCCACATGTCAGGCTGATTT 60.618 52.381 21.84 8.42 0.00 2.17
339 340 0.033796 CCCCACATGTCAGGCTGATT 60.034 55.000 21.84 8.81 0.00 2.57
340 341 1.210204 ACCCCACATGTCAGGCTGAT 61.210 55.000 21.84 1.96 0.00 2.90
341 342 1.841302 GACCCCACATGTCAGGCTGA 61.841 60.000 14.43 14.43 32.91 4.26
342 343 1.377725 GACCCCACATGTCAGGCTG 60.378 63.158 8.58 8.58 32.91 4.85
343 344 1.426251 TTGACCCCACATGTCAGGCT 61.426 55.000 10.08 0.00 43.14 4.58
344 345 1.074775 TTGACCCCACATGTCAGGC 59.925 57.895 10.08 0.00 43.14 4.85
345 346 0.609131 GGTTGACCCCACATGTCAGG 60.609 60.000 8.81 8.81 43.14 3.86
346 347 0.110295 TGGTTGACCCCACATGTCAG 59.890 55.000 0.00 0.00 43.14 3.51
347 348 0.110295 CTGGTTGACCCCACATGTCA 59.890 55.000 0.00 0.00 40.80 3.58
348 349 0.110486 ACTGGTTGACCCCACATGTC 59.890 55.000 0.00 0.00 34.29 3.06
349 350 0.110486 GACTGGTTGACCCCACATGT 59.890 55.000 0.00 0.00 34.29 3.21
350 351 0.110295 TGACTGGTTGACCCCACATG 59.890 55.000 0.00 0.00 34.29 3.21
351 352 0.401738 CTGACTGGTTGACCCCACAT 59.598 55.000 0.00 0.00 34.29 3.21
352 353 0.986019 ACTGACTGGTTGACCCCACA 60.986 55.000 0.00 0.00 34.29 4.17
353 354 0.182775 AACTGACTGGTTGACCCCAC 59.817 55.000 0.00 0.00 34.29 4.61
354 355 0.923358 AAACTGACTGGTTGACCCCA 59.077 50.000 0.00 0.00 34.29 4.96
355 356 2.067365 AAAACTGACTGGTTGACCCC 57.933 50.000 0.00 0.00 34.29 4.95
356 357 3.816994 AGTAAAACTGACTGGTTGACCC 58.183 45.455 0.00 0.00 34.29 4.46
369 370 2.299297 AGCCGTGTCTAGCAGTAAAACT 59.701 45.455 0.00 0.00 0.00 2.66
370 371 2.685100 AGCCGTGTCTAGCAGTAAAAC 58.315 47.619 0.00 0.00 0.00 2.43
371 372 3.396260 AAGCCGTGTCTAGCAGTAAAA 57.604 42.857 0.00 0.00 0.00 1.52
372 373 3.508793 AGTAAGCCGTGTCTAGCAGTAAA 59.491 43.478 0.00 0.00 0.00 2.01
373 374 3.087031 AGTAAGCCGTGTCTAGCAGTAA 58.913 45.455 0.00 0.00 0.00 2.24
374 375 2.719739 AGTAAGCCGTGTCTAGCAGTA 58.280 47.619 0.00 0.00 0.00 2.74
375 376 1.546961 AGTAAGCCGTGTCTAGCAGT 58.453 50.000 0.00 0.00 0.00 4.40
376 377 2.656560 AAGTAAGCCGTGTCTAGCAG 57.343 50.000 0.00 0.00 0.00 4.24
377 378 3.064207 CAAAAGTAAGCCGTGTCTAGCA 58.936 45.455 0.00 0.00 0.00 3.49
378 379 3.323243 TCAAAAGTAAGCCGTGTCTAGC 58.677 45.455 0.00 0.00 0.00 3.42
379 380 5.220228 CGATTCAAAAGTAAGCCGTGTCTAG 60.220 44.000 0.00 0.00 0.00 2.43
380 381 4.624024 CGATTCAAAAGTAAGCCGTGTCTA 59.376 41.667 0.00 0.00 0.00 2.59
381 382 3.432252 CGATTCAAAAGTAAGCCGTGTCT 59.568 43.478 0.00 0.00 0.00 3.41
382 383 3.424433 CCGATTCAAAAGTAAGCCGTGTC 60.424 47.826 0.00 0.00 0.00 3.67
383 384 2.482721 CCGATTCAAAAGTAAGCCGTGT 59.517 45.455 0.00 0.00 0.00 4.49
384 385 2.482721 ACCGATTCAAAAGTAAGCCGTG 59.517 45.455 0.00 0.00 0.00 4.94
385 386 2.482721 CACCGATTCAAAAGTAAGCCGT 59.517 45.455 0.00 0.00 0.00 5.68
386 387 2.482721 ACACCGATTCAAAAGTAAGCCG 59.517 45.455 0.00 0.00 0.00 5.52
387 388 3.500680 TCACACCGATTCAAAAGTAAGCC 59.499 43.478 0.00 0.00 0.00 4.35
388 389 4.742438 TCACACCGATTCAAAAGTAAGC 57.258 40.909 0.00 0.00 0.00 3.09
389 390 7.138736 ACAAATCACACCGATTCAAAAGTAAG 58.861 34.615 0.00 0.00 43.83 2.34
390 391 7.033530 ACAAATCACACCGATTCAAAAGTAA 57.966 32.000 0.00 0.00 43.83 2.24
391 392 6.627395 ACAAATCACACCGATTCAAAAGTA 57.373 33.333 0.00 0.00 43.83 2.24
392 393 5.514274 ACAAATCACACCGATTCAAAAGT 57.486 34.783 0.00 0.00 43.83 2.66
393 394 7.138736 ACTAACAAATCACACCGATTCAAAAG 58.861 34.615 0.00 0.00 43.83 2.27
394 395 7.033530 ACTAACAAATCACACCGATTCAAAA 57.966 32.000 0.00 0.00 43.83 2.44
395 396 6.261158 TGACTAACAAATCACACCGATTCAAA 59.739 34.615 0.00 0.00 43.83 2.69
396 397 5.760743 TGACTAACAAATCACACCGATTCAA 59.239 36.000 0.00 0.00 43.83 2.69
397 398 5.178623 GTGACTAACAAATCACACCGATTCA 59.821 40.000 0.00 0.00 43.83 2.57
398 399 5.408604 AGTGACTAACAAATCACACCGATTC 59.591 40.000 7.10 0.00 46.34 2.52
399 400 5.305585 AGTGACTAACAAATCACACCGATT 58.694 37.500 7.10 0.00 46.34 3.34
400 401 4.894784 AGTGACTAACAAATCACACCGAT 58.105 39.130 7.10 0.00 46.34 4.18
401 402 4.330944 AGTGACTAACAAATCACACCGA 57.669 40.909 7.10 0.00 46.34 4.69
402 403 4.509970 TCAAGTGACTAACAAATCACACCG 59.490 41.667 7.10 0.00 46.34 4.94
403 404 5.558273 CGTCAAGTGACTAACAAATCACACC 60.558 44.000 9.63 0.00 46.34 4.16
404 405 5.432157 CGTCAAGTGACTAACAAATCACAC 58.568 41.667 9.63 0.00 46.34 3.82
405 406 4.025229 GCGTCAAGTGACTAACAAATCACA 60.025 41.667 9.63 0.00 46.34 3.58
406 407 4.025229 TGCGTCAAGTGACTAACAAATCAC 60.025 41.667 9.63 0.00 44.64 3.06
407 408 4.123506 TGCGTCAAGTGACTAACAAATCA 58.876 39.130 9.63 0.00 42.66 2.57
408 409 4.725556 TGCGTCAAGTGACTAACAAATC 57.274 40.909 9.63 0.00 42.66 2.17
409 410 5.493133 TTTGCGTCAAGTGACTAACAAAT 57.507 34.783 9.63 0.00 42.66 2.32
410 411 4.948608 TTTGCGTCAAGTGACTAACAAA 57.051 36.364 9.63 12.72 42.66 2.83
411 412 4.393680 ACTTTTGCGTCAAGTGACTAACAA 59.606 37.500 9.63 8.18 42.66 2.83
448 449 6.375945 AAACCATCACTTTTGCCAAAAATC 57.624 33.333 3.91 0.00 34.81 2.17
462 463 5.239525 GGCTAGGATATGTCAAAACCATCAC 59.760 44.000 0.00 0.00 0.00 3.06
463 464 5.104151 TGGCTAGGATATGTCAAAACCATCA 60.104 40.000 0.00 0.00 0.00 3.07
473 474 7.281774 CCATCATATTTGTGGCTAGGATATGTC 59.718 40.741 0.00 0.00 34.13 3.06
475 476 7.114754 ACCATCATATTTGTGGCTAGGATATG 58.885 38.462 0.00 0.00 36.47 1.78
476 477 7.276088 ACCATCATATTTGTGGCTAGGATAT 57.724 36.000 0.00 0.00 36.47 1.63
481 482 7.099266 TCAAAACCATCATATTTGTGGCTAG 57.901 36.000 0.00 0.00 36.47 3.42
499 500 7.532682 TCAAAACCAGTAAATTGCTCAAAAC 57.467 32.000 0.00 0.00 0.00 2.43
532 968 3.138304 TCTTTGAACACAAGGATCCACG 58.862 45.455 15.82 6.71 0.00 4.94
535 971 9.143631 CATATTTTTCTTTGAACACAAGGATCC 57.856 33.333 2.48 2.48 31.63 3.36
548 984 8.174422 CCGGTTTATTTGGCATATTTTTCTTTG 58.826 33.333 0.00 0.00 0.00 2.77
576 1012 3.029570 ACCTCCTCCTAATCGTAACCAC 58.970 50.000 0.00 0.00 0.00 4.16
583 1019 0.824109 TGTGCACCTCCTCCTAATCG 59.176 55.000 15.69 0.00 0.00 3.34
601 1037 7.645058 AAGGTAAGGACACAATTAATCCATG 57.355 36.000 4.99 0.00 34.73 3.66
605 1041 7.610305 TGGAGAAAGGTAAGGACACAATTAATC 59.390 37.037 0.00 0.00 0.00 1.75
619 1055 7.147567 TGCATATACAGTCATGGAGAAAGGTAA 60.148 37.037 0.00 0.00 0.00 2.85
636 1072 7.926018 AGTGATTACGAAGATGTTGCATATACA 59.074 33.333 0.00 0.00 0.00 2.29
637 1073 8.299262 AGTGATTACGAAGATGTTGCATATAC 57.701 34.615 0.00 0.00 0.00 1.47
665 1101 8.700722 TTGCCAATAAAGTGCTTAATATGTTG 57.299 30.769 0.00 0.00 0.00 3.33
678 1114 7.821846 TGTTCTTGTTTTCTTTGCCAATAAAGT 59.178 29.630 0.00 0.00 38.49 2.66
746 1182 1.289800 GCCGGAAGAAGGTTGACGAC 61.290 60.000 5.05 0.00 0.00 4.34
747 1183 1.005394 GCCGGAAGAAGGTTGACGA 60.005 57.895 5.05 0.00 0.00 4.20
748 1184 2.380410 CGCCGGAAGAAGGTTGACG 61.380 63.158 5.05 0.00 0.00 4.35
770 1206 3.423539 TGCAAGTGTAGGCAAGATCTT 57.576 42.857 0.88 0.88 37.03 2.40
838 1274 4.302455 AGTCTATGATTATGTGCGTCAGC 58.698 43.478 0.00 0.00 45.41 4.26
839 1275 4.614702 CGAGTCTATGATTATGTGCGTCAG 59.385 45.833 0.00 0.00 0.00 3.51
840 1276 4.036380 ACGAGTCTATGATTATGTGCGTCA 59.964 41.667 0.00 0.00 0.00 4.35
841 1277 4.380087 CACGAGTCTATGATTATGTGCGTC 59.620 45.833 0.00 0.00 0.00 5.19
842 1278 4.290969 CACGAGTCTATGATTATGTGCGT 58.709 43.478 0.00 0.00 0.00 5.24
843 1279 3.670523 CCACGAGTCTATGATTATGTGCG 59.329 47.826 0.00 0.00 0.00 5.34
855 1296 1.669604 CTGCTAGAGCCACGAGTCTA 58.330 55.000 0.00 0.00 41.18 2.59
1798 2297 2.370281 ATTGTGTACTCTGTCCGCAG 57.630 50.000 0.00 0.00 43.87 5.18
1799 2298 3.945981 TTATTGTGTACTCTGTCCGCA 57.054 42.857 0.00 0.00 0.00 5.69
1800 2299 5.350365 TCATTTTATTGTGTACTCTGTCCGC 59.650 40.000 0.00 0.00 0.00 5.54
1801 2300 6.590292 ACTCATTTTATTGTGTACTCTGTCCG 59.410 38.462 0.00 0.00 0.00 4.79
1802 2301 7.907214 ACTCATTTTATTGTGTACTCTGTCC 57.093 36.000 0.00 0.00 0.00 4.02
1811 2310 9.979578 TCTTGCAATTTACTCATTTTATTGTGT 57.020 25.926 0.00 0.00 0.00 3.72
1890 2389 4.517285 TCCTAGACATGATGTTTTCTGCC 58.483 43.478 0.00 0.00 0.00 4.85
1911 2410 2.872858 GCAAACGACCCTAATCCATCTC 59.127 50.000 0.00 0.00 0.00 2.75
1913 2412 2.639065 TGCAAACGACCCTAATCCATC 58.361 47.619 0.00 0.00 0.00 3.51
1915 2414 2.570415 TTGCAAACGACCCTAATCCA 57.430 45.000 0.00 0.00 0.00 3.41
1916 2415 5.106078 TGTTATTTGCAAACGACCCTAATCC 60.106 40.000 15.41 0.00 0.00 3.01
1917 2416 5.798434 GTGTTATTTGCAAACGACCCTAATC 59.202 40.000 15.41 4.37 0.00 1.75
1918 2417 5.475564 AGTGTTATTTGCAAACGACCCTAAT 59.524 36.000 15.41 0.00 0.00 1.73
1920 2419 4.214545 CAGTGTTATTTGCAAACGACCCTA 59.785 41.667 15.41 0.00 0.00 3.53
1921 2420 3.004315 CAGTGTTATTTGCAAACGACCCT 59.996 43.478 15.41 9.70 0.00 4.34
1922 2421 3.003897 TCAGTGTTATTTGCAAACGACCC 59.996 43.478 15.41 7.51 0.00 4.46
1923 2422 4.217754 TCAGTGTTATTTGCAAACGACC 57.782 40.909 15.41 9.79 0.00 4.79
1924 2423 4.549599 CGATCAGTGTTATTTGCAAACGAC 59.450 41.667 15.41 15.80 0.00 4.34
1925 2424 4.377943 CCGATCAGTGTTATTTGCAAACGA 60.378 41.667 15.41 2.41 0.00 3.85
1926 2425 3.845775 CCGATCAGTGTTATTTGCAAACG 59.154 43.478 15.41 9.12 0.00 3.60
1927 2426 3.608073 GCCGATCAGTGTTATTTGCAAAC 59.392 43.478 15.41 3.07 0.00 2.93
1947 2446 0.108041 TCAAACGACCCTAATCCGCC 60.108 55.000 0.00 0.00 0.00 6.13
1964 2463 3.430790 CCCATCTCTCATAAACACGCTCA 60.431 47.826 0.00 0.00 0.00 4.26
1968 2467 2.158900 AGCCCCATCTCTCATAAACACG 60.159 50.000 0.00 0.00 0.00 4.49
1979 2478 1.323271 TGACGAGTGAGCCCCATCTC 61.323 60.000 0.00 0.00 0.00 2.75
2053 2553 5.745227 TGTAATGCTAAAAAGAGGGGAGAG 58.255 41.667 0.00 0.00 0.00 3.20
2054 2554 5.772393 TGTAATGCTAAAAAGAGGGGAGA 57.228 39.130 0.00 0.00 0.00 3.71
2185 2694 1.526917 GCACACCTGGTTGAGCTGT 60.527 57.895 0.00 0.00 31.10 4.40
2368 2877 3.730761 GTGGTTGAGCTGCGCCAG 61.731 66.667 4.18 3.40 34.12 4.85
2646 3156 1.763770 CAGGCACTTTGAGACCCCT 59.236 57.895 0.00 0.00 34.60 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.