Multiple sequence alignment - TraesCS3D01G430000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G430000 chr3D 100.000 3481 0 0 1 3481 544362297 544358817 0.000000e+00 6429.0
1 TraesCS3D01G430000 chr3D 97.688 173 3 1 2888 3060 504267424 504267595 2.630000e-76 296.0
2 TraesCS3D01G430000 chr3D 97.260 146 3 1 2895 3039 442043102 442043247 2.680000e-61 246.0
3 TraesCS3D01G430000 chr3A 93.341 2538 116 31 378 2895 681344481 681341977 0.000000e+00 3701.0
4 TraesCS3D01G430000 chr3A 85.408 466 33 12 3047 3481 681341991 681341530 5.300000e-123 451.0
5 TraesCS3D01G430000 chr3B 91.103 2675 123 56 186 2814 720220231 720217626 0.000000e+00 3515.0
6 TraesCS3D01G430000 chr3B 87.034 617 61 12 1201 1810 799812532 799811928 0.000000e+00 678.0
7 TraesCS3D01G430000 chr3B 79.621 422 73 12 1893 2311 799811437 799811026 1.220000e-74 291.0
8 TraesCS3D01G430000 chr3B 98.182 110 1 1 2 111 720220674 720220566 1.280000e-44 191.0
9 TraesCS3D01G430000 chr3B 91.358 81 7 0 3090 3170 720217579 720217499 1.020000e-20 111.0
10 TraesCS3D01G430000 chr3B 100.000 35 0 0 2861 2895 720217630 720217596 8.060000e-07 65.8
11 TraesCS3D01G430000 chr5A 79.374 1086 134 56 751 1811 702225952 702226972 0.000000e+00 682.0
12 TraesCS3D01G430000 chr5A 84.914 643 66 17 1203 1814 702522638 702521996 3.820000e-174 621.0
13 TraesCS3D01G430000 chr5A 75.877 941 138 59 1893 2796 702227611 702228499 7.000000e-107 398.0
14 TraesCS3D01G430000 chr5A 81.043 422 59 13 1893 2311 702521452 702521049 2.020000e-82 316.0
15 TraesCS3D01G430000 chr4B 86.312 621 70 12 1203 1810 662421277 662420659 0.000000e+00 662.0
16 TraesCS3D01G430000 chr4B 86.035 623 70 14 1203 1811 661304243 661304862 0.000000e+00 652.0
17 TraesCS3D01G430000 chr4B 81.928 415 53 13 1901 2309 661305257 661305655 7.200000e-87 331.0
18 TraesCS3D01G430000 chr4B 80.095 422 67 10 1893 2308 662420140 662419730 7.300000e-77 298.0
19 TraesCS3D01G430000 chr4B 91.837 98 8 0 14 111 329152398 329152495 1.690000e-28 137.0
20 TraesCS3D01G430000 chr4D 86.129 620 60 12 1201 1810 506287231 506286628 0.000000e+00 645.0
21 TraesCS3D01G430000 chr4D 90.258 349 32 2 1464 1811 506051369 506051716 4.100000e-124 455.0
22 TraesCS3D01G430000 chr4D 82.057 418 61 7 1893 2308 506052068 506052473 9.250000e-91 344.0
23 TraesCS3D01G430000 chr4D 79.859 427 67 11 1893 2311 506286092 506285677 9.450000e-76 294.0
24 TraesCS3D01G430000 chr4D 90.955 199 18 0 1191 1389 506051047 506051245 5.730000e-68 268.0
25 TraesCS3D01G430000 chr2D 94.318 176 10 0 2883 3058 42288227 42288402 1.590000e-68 270.0
26 TraesCS3D01G430000 chr5D 95.732 164 7 0 2895 3058 301670264 301670101 7.410000e-67 265.0
27 TraesCS3D01G430000 chr5D 90.816 98 6 3 15 111 311377620 311377525 1.010000e-25 128.0
28 TraesCS3D01G430000 chr5B 92.216 167 13 0 2895 3061 423940369 423940203 1.610000e-58 237.0
29 TraesCS3D01G430000 chr2B 91.925 161 10 1 2898 3058 722584976 722584819 4.520000e-54 222.0
30 TraesCS3D01G430000 chr1D 96.629 89 3 0 2893 2981 2857778 2857690 7.780000e-32 148.0
31 TraesCS3D01G430000 chr1D 89.691 97 10 0 15 111 445229871 445229775 1.310000e-24 124.0
32 TraesCS3D01G430000 chr1B 89.899 99 8 2 15 111 606495930 606495832 3.650000e-25 126.0
33 TraesCS3D01G430000 chr7D 77.857 140 27 1 3305 3440 591409916 591409777 2.230000e-12 84.2
34 TraesCS3D01G430000 chr4A 89.091 55 6 0 208 262 373644241 373644295 6.230000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G430000 chr3D 544358817 544362297 3480 True 6429.000000 6429 100.000000 1 3481 1 chr3D.!!$R1 3480
1 TraesCS3D01G430000 chr3A 681341530 681344481 2951 True 2076.000000 3701 89.374500 378 3481 2 chr3A.!!$R1 3103
2 TraesCS3D01G430000 chr3B 720217499 720220674 3175 True 970.700000 3515 95.160750 2 3170 4 chr3B.!!$R1 3168
3 TraesCS3D01G430000 chr3B 799811026 799812532 1506 True 484.500000 678 83.327500 1201 2311 2 chr3B.!!$R2 1110
4 TraesCS3D01G430000 chr5A 702225952 702228499 2547 False 540.000000 682 77.625500 751 2796 2 chr5A.!!$F1 2045
5 TraesCS3D01G430000 chr5A 702521049 702522638 1589 True 468.500000 621 82.978500 1203 2311 2 chr5A.!!$R1 1108
6 TraesCS3D01G430000 chr4B 661304243 661305655 1412 False 491.500000 652 83.981500 1203 2309 2 chr4B.!!$F2 1106
7 TraesCS3D01G430000 chr4B 662419730 662421277 1547 True 480.000000 662 83.203500 1203 2308 2 chr4B.!!$R1 1105
8 TraesCS3D01G430000 chr4D 506285677 506287231 1554 True 469.500000 645 82.994000 1201 2311 2 chr4D.!!$R1 1110
9 TraesCS3D01G430000 chr4D 506051047 506052473 1426 False 355.666667 455 87.756667 1191 2308 3 chr4D.!!$F1 1117

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 231 0.178301 GGGCGGTAGGAAGAAGAAGG 59.822 60.0 0.00 0.0 0.00 3.46 F
147 233 0.178301 GCGGTAGGAAGAAGAAGGGG 59.822 60.0 0.00 0.0 0.00 4.79 F
373 635 0.249398 CCCCGGCGATAGGATAAAGG 59.751 60.0 9.30 0.0 0.00 3.11 F
519 781 0.528684 TTCTTTTGCGCCAAAACCGG 60.529 50.0 4.18 0.0 38.24 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1825 2171 0.984230 ATGGATGGGATCGGCGTTAT 59.016 50.000 6.85 0.00 0.00 1.89 R
1858 2451 5.962433 TCATATATGTAAGTAGGCGCTTCC 58.038 41.667 7.64 0.00 0.00 3.46 R
2342 3577 2.810650 CAACAGTTACGCTAGCTAGGG 58.189 52.381 30.32 30.32 41.49 3.53 R
2493 3733 1.057361 GCGCTGTGACGACGAATTC 59.943 57.895 0.00 0.00 34.06 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 9.809096 CTCATCAAAACTAGAGCTATTTGACTA 57.191 33.333 0.00 0.00 42.57 2.59
111 112 4.705337 TCGAAAGAGCTTACTTCTCTCC 57.295 45.455 0.00 0.00 39.81 3.71
112 113 3.444388 TCGAAAGAGCTTACTTCTCTCCC 59.556 47.826 0.00 0.00 39.81 4.30
114 115 3.483255 AAGAGCTTACTTCTCTCCCCT 57.517 47.619 0.00 0.00 39.81 4.79
115 116 4.611564 AAGAGCTTACTTCTCTCCCCTA 57.388 45.455 0.00 0.00 39.81 3.53
116 117 3.905968 AGAGCTTACTTCTCTCCCCTAC 58.094 50.000 0.00 0.00 36.21 3.18
117 118 2.960384 GAGCTTACTTCTCTCCCCTACC 59.040 54.545 0.00 0.00 0.00 3.18
119 120 3.105283 GCTTACTTCTCTCCCCTACCAA 58.895 50.000 0.00 0.00 0.00 3.67
121 122 2.255770 ACTTCTCTCCCCTACCAAGG 57.744 55.000 0.00 0.00 43.25 3.61
135 221 2.758737 AAGGTCTCGGGCGGTAGG 60.759 66.667 0.00 0.00 0.00 3.18
136 222 3.292481 AAGGTCTCGGGCGGTAGGA 62.292 63.158 0.00 0.00 0.00 2.94
137 223 2.757099 GGTCTCGGGCGGTAGGAA 60.757 66.667 0.00 0.00 0.00 3.36
138 224 2.783288 GGTCTCGGGCGGTAGGAAG 61.783 68.421 0.00 0.00 0.00 3.46
139 225 1.751927 GTCTCGGGCGGTAGGAAGA 60.752 63.158 0.00 0.00 0.00 2.87
140 226 1.000521 TCTCGGGCGGTAGGAAGAA 60.001 57.895 0.00 0.00 0.00 2.52
141 227 1.035932 TCTCGGGCGGTAGGAAGAAG 61.036 60.000 0.00 0.00 0.00 2.85
142 228 1.000521 TCGGGCGGTAGGAAGAAGA 60.001 57.895 0.00 0.00 0.00 2.87
143 229 0.612732 TCGGGCGGTAGGAAGAAGAA 60.613 55.000 0.00 0.00 0.00 2.52
144 230 0.179108 CGGGCGGTAGGAAGAAGAAG 60.179 60.000 0.00 0.00 0.00 2.85
145 231 0.178301 GGGCGGTAGGAAGAAGAAGG 59.822 60.000 0.00 0.00 0.00 3.46
146 232 0.178301 GGCGGTAGGAAGAAGAAGGG 59.822 60.000 0.00 0.00 0.00 3.95
147 233 0.178301 GCGGTAGGAAGAAGAAGGGG 59.822 60.000 0.00 0.00 0.00 4.79
148 234 0.831307 CGGTAGGAAGAAGAAGGGGG 59.169 60.000 0.00 0.00 0.00 5.40
149 235 0.547075 GGTAGGAAGAAGAAGGGGGC 59.453 60.000 0.00 0.00 0.00 5.80
150 236 1.585895 GTAGGAAGAAGAAGGGGGCT 58.414 55.000 0.00 0.00 0.00 5.19
151 237 1.210722 GTAGGAAGAAGAAGGGGGCTG 59.789 57.143 0.00 0.00 0.00 4.85
152 238 1.210885 AGGAAGAAGAAGGGGGCTGG 61.211 60.000 0.00 0.00 0.00 4.85
153 239 1.379176 GAAGAAGAAGGGGGCTGGC 60.379 63.158 0.00 0.00 0.00 4.85
154 240 1.854507 AAGAAGAAGGGGGCTGGCT 60.855 57.895 0.00 0.00 0.00 4.75
155 241 1.857638 AAGAAGAAGGGGGCTGGCTC 61.858 60.000 0.00 0.00 0.00 4.70
156 242 3.689002 GAAGAAGGGGGCTGGCTCG 62.689 68.421 0.00 0.00 0.00 5.03
170 256 3.706373 CTCGGTGGGTGGGACCTG 61.706 72.222 0.00 0.00 38.64 4.00
174 260 4.351054 GTGGGTGGGACCTGCCAG 62.351 72.222 7.09 0.00 38.64 4.85
196 457 2.052104 GCCCACTGCGGCCTTTAAT 61.052 57.895 0.00 0.00 43.66 1.40
210 471 5.105513 CGGCCTTTAATTGTTCAAACCCTAT 60.106 40.000 0.00 0.00 0.00 2.57
213 474 6.811665 GCCTTTAATTGTTCAAACCCTATCAC 59.188 38.462 0.00 0.00 0.00 3.06
216 477 5.982890 AATTGTTCAAACCCTATCACCAG 57.017 39.130 0.00 0.00 0.00 4.00
227 488 0.689412 TATCACCAGGGTCGATGGCA 60.689 55.000 3.39 0.00 41.87 4.92
262 523 1.380785 TATCGCCCGAGACCTTGGT 60.381 57.895 2.82 0.00 31.98 3.67
267 528 2.064581 CCCGAGACCTTGGTAGGGG 61.065 68.421 15.39 11.68 46.58 4.79
269 530 1.328430 CCGAGACCTTGGTAGGGGAC 61.328 65.000 0.00 0.00 46.58 4.46
302 563 1.153628 GCCGCTGACGTGGATAAGT 60.154 57.895 0.00 0.00 43.70 2.24
309 570 3.069729 GCTGACGTGGATAAGTTCCCTAT 59.930 47.826 0.00 0.00 44.77 2.57
311 572 4.283337 TGACGTGGATAAGTTCCCTATCA 58.717 43.478 0.00 0.00 44.77 2.15
315 576 4.501571 CGTGGATAAGTTCCCTATCACCAG 60.502 50.000 0.00 0.00 44.77 4.00
341 603 0.538118 GACGGTGGGCAGTTATACCA 59.462 55.000 0.00 0.00 32.75 3.25
343 605 1.134220 ACGGTGGGCAGTTATACCATG 60.134 52.381 0.00 0.00 36.54 3.66
364 626 2.203379 TCATCGACCCCGGCGATA 60.203 61.111 9.30 2.68 45.74 2.92
365 627 2.258591 CATCGACCCCGGCGATAG 59.741 66.667 9.30 6.57 45.74 2.08
366 628 2.989824 ATCGACCCCGGCGATAGG 60.990 66.667 9.30 8.93 45.66 2.57
367 629 3.502621 ATCGACCCCGGCGATAGGA 62.503 63.158 9.30 0.00 45.66 2.94
368 630 2.783122 ATCGACCCCGGCGATAGGAT 62.783 60.000 9.30 1.26 45.66 3.24
369 631 1.676635 CGACCCCGGCGATAGGATA 60.677 63.158 9.30 0.00 0.00 2.59
370 632 1.246056 CGACCCCGGCGATAGGATAA 61.246 60.000 9.30 0.00 0.00 1.75
371 633 0.971386 GACCCCGGCGATAGGATAAA 59.029 55.000 9.30 0.00 0.00 1.40
372 634 0.974383 ACCCCGGCGATAGGATAAAG 59.026 55.000 9.30 0.00 0.00 1.85
373 635 0.249398 CCCCGGCGATAGGATAAAGG 59.751 60.000 9.30 0.00 0.00 3.11
374 636 0.249398 CCCGGCGATAGGATAAAGGG 59.751 60.000 9.30 0.00 0.00 3.95
375 637 0.974383 CCGGCGATAGGATAAAGGGT 59.026 55.000 9.30 0.00 0.00 4.34
376 638 1.067071 CCGGCGATAGGATAAAGGGTC 60.067 57.143 9.30 0.00 0.00 4.46
377 639 1.616865 CGGCGATAGGATAAAGGGTCA 59.383 52.381 0.00 0.00 0.00 4.02
378 640 2.352814 CGGCGATAGGATAAAGGGTCAG 60.353 54.545 0.00 0.00 0.00 3.51
379 641 2.897969 GGCGATAGGATAAAGGGTCAGA 59.102 50.000 0.00 0.00 0.00 3.27
380 642 3.515901 GGCGATAGGATAAAGGGTCAGAT 59.484 47.826 0.00 0.00 0.00 2.90
381 643 4.382147 GGCGATAGGATAAAGGGTCAGATC 60.382 50.000 0.00 0.00 0.00 2.75
382 644 4.464597 GCGATAGGATAAAGGGTCAGATCT 59.535 45.833 0.00 0.00 0.00 2.75
383 645 5.046950 GCGATAGGATAAAGGGTCAGATCTT 60.047 44.000 0.00 0.00 0.00 2.40
384 646 6.153000 GCGATAGGATAAAGGGTCAGATCTTA 59.847 42.308 0.00 0.00 0.00 2.10
519 781 0.528684 TTCTTTTGCGCCAAAACCGG 60.529 50.000 4.18 0.00 38.24 5.28
558 820 4.030216 TGATGTCCATTCCTGCACTAGTA 58.970 43.478 0.00 0.00 0.00 1.82
566 828 2.730382 TCCTGCACTAGTAATCGGACA 58.270 47.619 0.00 0.00 0.00 4.02
610 872 1.115467 ATCTTCTCGTCCGGCTCAAT 58.885 50.000 0.00 0.00 0.00 2.57
817 1079 7.148656 CCACTAAAGCGAATATTTTGTTTTGGG 60.149 37.037 13.97 9.35 32.53 4.12
875 1139 1.266175 GTATCATCAGCATGCACAGCC 59.734 52.381 21.98 0.00 34.76 4.85
886 1150 1.746470 TGCACAGCCTCATCAATCAG 58.254 50.000 0.00 0.00 0.00 2.90
913 1178 1.209747 GCTATATAAAGGGCGGGAGGG 59.790 57.143 0.00 0.00 0.00 4.30
1409 1716 5.856455 CGTAACAAACCAATCCAACATCTTC 59.144 40.000 0.00 0.00 0.00 2.87
1417 1726 5.474876 ACCAATCCAACATCTTCTCTTGTTC 59.525 40.000 0.00 0.00 33.93 3.18
1423 1732 5.220854 CCAACATCTTCTCTTGTTCGTGTTT 60.221 40.000 0.00 0.00 33.93 2.83
1427 1759 6.929049 ACATCTTCTCTTGTTCGTGTTTGATA 59.071 34.615 0.00 0.00 0.00 2.15
1432 1764 9.450807 CTTCTCTTGTTCGTGTTTGATAATTTT 57.549 29.630 0.00 0.00 0.00 1.82
1457 1789 9.522804 TTTTTGATCAATTGGTTTACTGTGTAC 57.477 29.630 9.40 0.00 0.00 2.90
1482 1828 1.079490 ACAGATGAGGAGAGGAACCCA 59.921 52.381 0.00 0.00 0.00 4.51
1825 2171 7.337184 AGTCAGTATCTATCTCGTCAACTTTCA 59.663 37.037 0.00 0.00 0.00 2.69
1859 2452 2.802792 CATGTTCGCATGCAGGGG 59.197 61.111 19.57 9.40 46.97 4.79
1860 2453 1.750018 CATGTTCGCATGCAGGGGA 60.750 57.895 19.57 14.58 46.97 4.81
2023 3242 1.202582 ACATGAGCGTGGTCAGTACTC 59.797 52.381 0.00 0.00 0.00 2.59
2024 3243 1.202348 CATGAGCGTGGTCAGTACTCA 59.798 52.381 7.86 0.00 41.28 3.41
2025 3244 0.881796 TGAGCGTGGTCAGTACTCAG 59.118 55.000 0.00 0.00 32.65 3.35
2026 3245 0.882474 GAGCGTGGTCAGTACTCAGT 59.118 55.000 0.00 0.00 0.00 3.41
2084 3319 3.313249 TGTCTCTTTCGTTCTCACACGTA 59.687 43.478 0.00 0.00 41.16 3.57
2313 3548 1.207329 GGCGTGGAGGTAAGTCAGATT 59.793 52.381 0.00 0.00 0.00 2.40
2361 3596 2.165845 CACCCTAGCTAGCGTAACTGTT 59.834 50.000 15.74 0.00 0.00 3.16
2369 3604 0.250727 AGCGTAACTGTTGCCCATGT 60.251 50.000 2.69 0.00 0.00 3.21
2490 3730 0.249120 CTGCATGTAGAACCCGACCA 59.751 55.000 4.57 0.00 0.00 4.02
2492 3732 1.090052 GCATGTAGAACCCGACCAGC 61.090 60.000 0.00 0.00 0.00 4.85
2493 3733 0.806102 CATGTAGAACCCGACCAGCG 60.806 60.000 0.00 0.00 40.47 5.18
2494 3734 0.968901 ATGTAGAACCCGACCAGCGA 60.969 55.000 0.00 0.00 44.57 4.93
2495 3735 1.180456 TGTAGAACCCGACCAGCGAA 61.180 55.000 0.00 0.00 44.57 4.70
2686 3949 3.181329 TCATACAAAGGCTCTGGAGGAA 58.819 45.455 0.00 0.00 0.00 3.36
2687 3950 3.055094 TCATACAAAGGCTCTGGAGGAAC 60.055 47.826 0.00 0.00 0.00 3.62
2688 3951 0.035458 ACAAAGGCTCTGGAGGAACG 59.965 55.000 0.00 0.00 0.00 3.95
2689 3952 0.035458 CAAAGGCTCTGGAGGAACGT 59.965 55.000 0.00 0.00 0.00 3.99
2690 3953 1.275291 CAAAGGCTCTGGAGGAACGTA 59.725 52.381 0.00 0.00 0.00 3.57
2705 3968 3.992636 CGTACCTCGTTCTCCACTC 57.007 57.895 0.00 0.00 34.52 3.51
2711 3974 1.133407 CCTCGTTCTCCACTCTACTGC 59.867 57.143 0.00 0.00 0.00 4.40
2714 3982 1.402984 CGTTCTCCACTCTACTGCACC 60.403 57.143 0.00 0.00 0.00 5.01
2806 4098 6.997655 TGATCTCCGAAAGATATATGCAGTT 58.002 36.000 0.00 0.00 45.06 3.16
2807 4099 7.093354 TGATCTCCGAAAGATATATGCAGTTC 58.907 38.462 0.00 0.00 45.06 3.01
2847 4141 1.062587 CATGTTCGGTTCGAGAATGGC 59.937 52.381 0.00 0.00 37.14 4.40
2850 4144 1.136057 GTTCGGTTCGAGAATGGCAAC 60.136 52.381 0.00 0.00 37.14 4.17
2851 4145 1.541452 TTCGGTTCGAGAATGGCAACA 60.541 47.619 0.00 0.00 45.24 3.33
2895 4190 7.967854 TGTGAACGGAATAAGCAAAATCATAAG 59.032 33.333 0.00 0.00 0.00 1.73
2896 4191 7.432252 GTGAACGGAATAAGCAAAATCATAAGG 59.568 37.037 0.00 0.00 0.00 2.69
2897 4192 5.831997 ACGGAATAAGCAAAATCATAAGGC 58.168 37.500 0.00 0.00 0.00 4.35
2898 4193 5.221244 ACGGAATAAGCAAAATCATAAGGCC 60.221 40.000 0.00 0.00 0.00 5.19
2900 4195 2.584492 AAGCAAAATCATAAGGCCGC 57.416 45.000 0.00 0.00 0.00 6.53
2901 4196 0.381801 AGCAAAATCATAAGGCCGCG 59.618 50.000 0.00 0.00 0.00 6.46
2902 4197 1.208642 GCAAAATCATAAGGCCGCGC 61.209 55.000 0.00 0.00 0.00 6.86
2903 4198 0.381801 CAAAATCATAAGGCCGCGCT 59.618 50.000 5.56 0.00 0.00 5.92
2904 4199 1.102978 AAAATCATAAGGCCGCGCTT 58.897 45.000 5.56 1.72 0.00 4.68
2905 4200 0.381801 AAATCATAAGGCCGCGCTTG 59.618 50.000 5.56 0.00 0.00 4.01
2906 4201 1.447317 AATCATAAGGCCGCGCTTGG 61.447 55.000 5.56 0.18 0.00 3.61
2916 4211 2.749839 GCGCTTGGCATGGGTGTA 60.750 61.111 16.83 0.00 42.87 2.90
2917 4212 2.339556 GCGCTTGGCATGGGTGTAA 61.340 57.895 16.83 0.00 42.87 2.41
2918 4213 1.666209 GCGCTTGGCATGGGTGTAAT 61.666 55.000 16.83 0.00 42.87 1.89
2919 4214 0.817013 CGCTTGGCATGGGTGTAATT 59.183 50.000 8.98 0.00 0.00 1.40
2920 4215 1.469595 CGCTTGGCATGGGTGTAATTG 60.470 52.381 8.98 0.00 0.00 2.32
2921 4216 1.824230 GCTTGGCATGGGTGTAATTGA 59.176 47.619 2.33 0.00 0.00 2.57
2922 4217 2.233431 GCTTGGCATGGGTGTAATTGAA 59.767 45.455 2.33 0.00 0.00 2.69
2923 4218 3.118665 GCTTGGCATGGGTGTAATTGAAT 60.119 43.478 2.33 0.00 0.00 2.57
2924 4219 4.099266 GCTTGGCATGGGTGTAATTGAATA 59.901 41.667 2.33 0.00 0.00 1.75
2925 4220 5.590530 TTGGCATGGGTGTAATTGAATAC 57.409 39.130 0.00 0.00 0.00 1.89
2926 4221 3.629855 TGGCATGGGTGTAATTGAATACG 59.370 43.478 0.00 0.00 0.00 3.06
2927 4222 3.004315 GGCATGGGTGTAATTGAATACGG 59.996 47.826 0.00 0.00 0.00 4.02
2928 4223 3.004315 GCATGGGTGTAATTGAATACGGG 59.996 47.826 0.00 0.00 0.00 5.28
2929 4224 4.204012 CATGGGTGTAATTGAATACGGGT 58.796 43.478 0.00 0.00 0.00 5.28
2930 4225 3.611970 TGGGTGTAATTGAATACGGGTG 58.388 45.455 0.00 0.00 0.00 4.61
2931 4226 3.009253 TGGGTGTAATTGAATACGGGTGT 59.991 43.478 0.00 0.00 0.00 4.16
2932 4227 4.224594 TGGGTGTAATTGAATACGGGTGTA 59.775 41.667 0.00 0.00 34.45 2.90
2933 4228 5.104444 TGGGTGTAATTGAATACGGGTGTAT 60.104 40.000 0.00 0.00 43.14 2.29
2947 4242 8.882415 ATACGGGTGTATTATTCTTACAAGTG 57.118 34.615 0.00 0.00 38.10 3.16
2948 4243 6.704310 ACGGGTGTATTATTCTTACAAGTGT 58.296 36.000 0.00 0.00 31.72 3.55
2949 4244 7.839907 ACGGGTGTATTATTCTTACAAGTGTA 58.160 34.615 0.00 0.00 31.72 2.90
2950 4245 8.313292 ACGGGTGTATTATTCTTACAAGTGTAA 58.687 33.333 3.97 3.97 38.10 2.41
2951 4246 8.598075 CGGGTGTATTATTCTTACAAGTGTAAC 58.402 37.037 0.00 0.00 35.75 2.50
2964 4259 1.881591 GTGTAACTTACCGGCCAACA 58.118 50.000 0.00 0.00 0.00 3.33
2965 4260 1.802365 GTGTAACTTACCGGCCAACAG 59.198 52.381 0.00 0.00 0.00 3.16
2966 4261 0.800631 GTAACTTACCGGCCAACAGC 59.199 55.000 0.00 0.00 42.60 4.40
2967 4262 0.688487 TAACTTACCGGCCAACAGCT 59.312 50.000 0.00 0.00 43.05 4.24
2968 4263 0.688487 AACTTACCGGCCAACAGCTA 59.312 50.000 0.00 0.00 43.05 3.32
2969 4264 0.909623 ACTTACCGGCCAACAGCTAT 59.090 50.000 0.00 0.00 43.05 2.97
2970 4265 1.280998 ACTTACCGGCCAACAGCTATT 59.719 47.619 0.00 0.00 43.05 1.73
2971 4266 2.290705 ACTTACCGGCCAACAGCTATTT 60.291 45.455 0.00 0.00 43.05 1.40
2972 4267 2.032680 TACCGGCCAACAGCTATTTC 57.967 50.000 0.00 0.00 43.05 2.17
2973 4268 0.679960 ACCGGCCAACAGCTATTTCC 60.680 55.000 0.00 0.00 43.05 3.13
2974 4269 1.714899 CCGGCCAACAGCTATTTCCG 61.715 60.000 2.24 7.92 43.05 4.30
2975 4270 1.714899 CGGCCAACAGCTATTTCCGG 61.715 60.000 2.24 0.00 43.05 5.14
2976 4271 1.433471 GCCAACAGCTATTTCCGGC 59.567 57.895 0.00 0.00 38.99 6.13
2977 4272 2.004808 GCCAACAGCTATTTCCGGCC 62.005 60.000 0.00 0.00 38.99 6.13
2978 4273 1.714899 CCAACAGCTATTTCCGGCCG 61.715 60.000 21.04 21.04 0.00 6.13
2979 4274 1.451387 AACAGCTATTTCCGGCCGG 60.451 57.895 39.13 39.13 0.00 6.13
2980 4275 1.906105 AACAGCTATTTCCGGCCGGA 61.906 55.000 42.66 42.66 43.52 5.14
2988 4283 4.824090 TCCGGCCGGAAATCAAAA 57.176 50.000 43.93 19.95 42.05 2.44
2989 4284 2.259281 TCCGGCCGGAAATCAAAAC 58.741 52.632 43.93 0.00 42.05 2.43
2990 4285 1.154112 CCGGCCGGAAATCAAAACG 60.154 57.895 41.82 6.81 37.50 3.60
2993 4288 4.450955 CCGGAAATCAAAACGGCG 57.549 55.556 4.80 4.80 39.85 6.46
2994 4289 1.154112 CCGGAAATCAAAACGGCGG 60.154 57.895 13.24 0.00 39.85 6.13
2995 4290 1.154112 CGGAAATCAAAACGGCGGG 60.154 57.895 13.24 0.00 0.00 6.13
2996 4291 1.445410 GGAAATCAAAACGGCGGGC 60.445 57.895 13.24 0.00 0.00 6.13
2997 4292 1.799916 GAAATCAAAACGGCGGGCG 60.800 57.895 23.00 23.00 0.00 6.13
2998 4293 3.275832 AAATCAAAACGGCGGGCGG 62.276 57.895 27.66 10.14 0.00 6.13
2999 4294 4.708386 ATCAAAACGGCGGGCGGA 62.708 61.111 27.66 15.26 0.00 5.54
3008 4303 3.766691 GCGGGCGGAGGTCTGTAA 61.767 66.667 0.00 0.00 0.00 2.41
3009 4304 2.494918 CGGGCGGAGGTCTGTAAG 59.505 66.667 0.00 0.00 0.00 2.34
3010 4305 2.348888 CGGGCGGAGGTCTGTAAGT 61.349 63.158 0.00 0.00 33.76 2.24
3011 4306 1.885163 CGGGCGGAGGTCTGTAAGTT 61.885 60.000 0.00 0.00 33.76 2.66
3012 4307 0.323957 GGGCGGAGGTCTGTAAGTTT 59.676 55.000 0.00 0.00 33.76 2.66
3013 4308 1.271217 GGGCGGAGGTCTGTAAGTTTT 60.271 52.381 0.00 0.00 33.76 2.43
3014 4309 2.027837 GGGCGGAGGTCTGTAAGTTTTA 60.028 50.000 0.00 0.00 33.76 1.52
3015 4310 3.370209 GGGCGGAGGTCTGTAAGTTTTAT 60.370 47.826 0.00 0.00 33.76 1.40
3016 4311 4.141869 GGGCGGAGGTCTGTAAGTTTTATA 60.142 45.833 0.00 0.00 33.76 0.98
3017 4312 4.807834 GGCGGAGGTCTGTAAGTTTTATAC 59.192 45.833 0.00 0.00 33.76 1.47
3018 4313 4.501921 GCGGAGGTCTGTAAGTTTTATACG 59.498 45.833 0.00 0.00 33.76 3.06
3019 4314 5.039333 CGGAGGTCTGTAAGTTTTATACGG 58.961 45.833 0.00 0.00 33.76 4.02
3020 4315 5.354767 GGAGGTCTGTAAGTTTTATACGGG 58.645 45.833 0.00 0.00 33.76 5.28
3021 4316 5.105187 GGAGGTCTGTAAGTTTTATACGGGT 60.105 44.000 0.00 0.00 33.76 5.28
3022 4317 5.727434 AGGTCTGTAAGTTTTATACGGGTG 58.273 41.667 0.00 0.00 33.76 4.61
3023 4318 5.246883 AGGTCTGTAAGTTTTATACGGGTGT 59.753 40.000 0.00 0.00 33.76 4.16
3024 4319 6.437162 AGGTCTGTAAGTTTTATACGGGTGTA 59.563 38.462 0.00 0.00 33.76 2.90
3025 4320 7.124750 AGGTCTGTAAGTTTTATACGGGTGTAT 59.875 37.037 0.00 0.00 39.00 2.29
3026 4321 7.436376 GGTCTGTAAGTTTTATACGGGTGTATC 59.564 40.741 0.00 0.00 37.59 2.24
3027 4322 8.193438 GTCTGTAAGTTTTATACGGGTGTATCT 58.807 37.037 0.00 0.00 37.59 1.98
3028 4323 8.192774 TCTGTAAGTTTTATACGGGTGTATCTG 58.807 37.037 0.00 0.00 37.59 2.90
3029 4324 7.267128 TGTAAGTTTTATACGGGTGTATCTGG 58.733 38.462 0.00 0.00 41.50 3.86
3030 4325 6.549433 AAGTTTTATACGGGTGTATCTGGA 57.451 37.500 0.00 0.00 41.50 3.86
3031 4326 6.549433 AGTTTTATACGGGTGTATCTGGAA 57.451 37.500 0.00 0.00 41.50 3.53
3032 4327 7.133133 AGTTTTATACGGGTGTATCTGGAAT 57.867 36.000 0.00 0.00 41.50 3.01
3033 4328 6.990349 AGTTTTATACGGGTGTATCTGGAATG 59.010 38.462 0.00 0.00 41.50 2.67
3034 4329 6.734502 TTTATACGGGTGTATCTGGAATGA 57.265 37.500 0.00 0.00 41.50 2.57
3035 4330 6.734502 TTATACGGGTGTATCTGGAATGAA 57.265 37.500 0.00 0.00 41.50 2.57
3036 4331 3.992943 ACGGGTGTATCTGGAATGAAA 57.007 42.857 0.00 0.00 0.00 2.69
3037 4332 4.295141 ACGGGTGTATCTGGAATGAAAA 57.705 40.909 0.00 0.00 0.00 2.29
3038 4333 4.007659 ACGGGTGTATCTGGAATGAAAAC 58.992 43.478 0.00 0.00 0.00 2.43
3039 4334 3.063452 CGGGTGTATCTGGAATGAAAACG 59.937 47.826 0.00 0.00 0.00 3.60
3040 4335 4.258543 GGGTGTATCTGGAATGAAAACGA 58.741 43.478 0.00 0.00 0.00 3.85
3041 4336 4.881850 GGGTGTATCTGGAATGAAAACGAT 59.118 41.667 0.00 0.00 0.00 3.73
3042 4337 6.053005 GGGTGTATCTGGAATGAAAACGATA 58.947 40.000 0.00 0.00 0.00 2.92
3043 4338 6.540914 GGGTGTATCTGGAATGAAAACGATAA 59.459 38.462 0.00 0.00 0.00 1.75
3044 4339 7.228706 GGGTGTATCTGGAATGAAAACGATAAT 59.771 37.037 0.00 0.00 0.00 1.28
3045 4340 8.283291 GGTGTATCTGGAATGAAAACGATAATC 58.717 37.037 0.00 0.00 0.00 1.75
3046 4341 8.283291 GTGTATCTGGAATGAAAACGATAATCC 58.717 37.037 0.00 0.00 0.00 3.01
3047 4342 7.990314 TGTATCTGGAATGAAAACGATAATCCA 59.010 33.333 0.00 0.00 34.52 3.41
3048 4343 7.880160 ATCTGGAATGAAAACGATAATCCAA 57.120 32.000 0.00 0.00 35.25 3.53
3049 4344 7.320443 TCTGGAATGAAAACGATAATCCAAG 57.680 36.000 0.00 0.00 35.25 3.61
3050 4345 5.890334 TGGAATGAAAACGATAATCCAAGC 58.110 37.500 0.00 0.00 32.84 4.01
3051 4346 5.417266 TGGAATGAAAACGATAATCCAAGCA 59.583 36.000 0.00 0.00 32.84 3.91
3052 4347 6.071672 TGGAATGAAAACGATAATCCAAGCAA 60.072 34.615 0.00 0.00 32.84 3.91
3053 4348 6.811170 GGAATGAAAACGATAATCCAAGCAAA 59.189 34.615 0.00 0.00 0.00 3.68
3054 4349 7.009540 GGAATGAAAACGATAATCCAAGCAAAG 59.990 37.037 0.00 0.00 0.00 2.77
3055 4350 5.160641 TGAAAACGATAATCCAAGCAAAGC 58.839 37.500 0.00 0.00 0.00 3.51
3056 4351 3.782889 AACGATAATCCAAGCAAAGCC 57.217 42.857 0.00 0.00 0.00 4.35
3057 4352 3.004752 ACGATAATCCAAGCAAAGCCT 57.995 42.857 0.00 0.00 0.00 4.58
3058 4353 4.150897 ACGATAATCCAAGCAAAGCCTA 57.849 40.909 0.00 0.00 0.00 3.93
3059 4354 4.523083 ACGATAATCCAAGCAAAGCCTAA 58.477 39.130 0.00 0.00 0.00 2.69
3060 4355 4.947388 ACGATAATCCAAGCAAAGCCTAAA 59.053 37.500 0.00 0.00 0.00 1.85
3061 4356 5.163652 ACGATAATCCAAGCAAAGCCTAAAC 60.164 40.000 0.00 0.00 0.00 2.01
3062 4357 5.163663 CGATAATCCAAGCAAAGCCTAAACA 60.164 40.000 0.00 0.00 0.00 2.83
3063 4358 4.953940 AATCCAAGCAAAGCCTAAACAA 57.046 36.364 0.00 0.00 0.00 2.83
3064 4359 4.525912 ATCCAAGCAAAGCCTAAACAAG 57.474 40.909 0.00 0.00 0.00 3.16
3065 4360 3.295973 TCCAAGCAAAGCCTAAACAAGT 58.704 40.909 0.00 0.00 0.00 3.16
3079 4374 6.627287 GCCTAAACAAGTTTTGGTTCAACTCT 60.627 38.462 21.29 0.00 43.89 3.24
3088 4383 2.215196 TGGTTCAACTCTAAACGGCAC 58.785 47.619 0.00 0.00 0.00 5.01
3170 4465 2.094649 GTGAGCCTTTGCGTACTACTCT 60.095 50.000 0.00 0.00 44.33 3.24
3190 4485 9.765795 CTACTCTAGTATATTTTTGGGTCAAGG 57.234 37.037 0.00 0.00 0.00 3.61
3194 4489 8.044908 TCTAGTATATTTTTGGGTCAAGGTGAC 58.955 37.037 0.00 0.00 46.23 3.67
3238 4533 5.046591 TGGTGTCATCTCGAATAAAAGTCCT 60.047 40.000 0.00 0.00 0.00 3.85
3253 4548 2.301577 GTCCTCCGACTTCAATCCAG 57.698 55.000 0.00 0.00 35.99 3.86
3257 4552 2.744202 CCTCCGACTTCAATCCAGTTTG 59.256 50.000 0.00 0.00 0.00 2.93
3258 4553 3.557054 CCTCCGACTTCAATCCAGTTTGA 60.557 47.826 0.00 0.00 33.89 2.69
3260 4555 4.002982 TCCGACTTCAATCCAGTTTGATG 58.997 43.478 0.00 0.00 35.64 3.07
3261 4556 4.002982 CCGACTTCAATCCAGTTTGATGA 58.997 43.478 9.89 0.00 35.64 2.92
3262 4557 4.142816 CCGACTTCAATCCAGTTTGATGAC 60.143 45.833 9.89 4.89 35.64 3.06
3263 4558 4.434725 CGACTTCAATCCAGTTTGATGACG 60.435 45.833 9.89 10.76 39.93 4.35
3264 4559 3.189287 ACTTCAATCCAGTTTGATGACGC 59.811 43.478 9.89 0.00 35.64 5.19
3266 4561 3.411446 TCAATCCAGTTTGATGACGCTT 58.589 40.909 0.00 0.00 30.82 4.68
3283 4607 0.883833 CTTGGTGTGGCATTGGAGTC 59.116 55.000 0.00 0.00 0.00 3.36
3294 4618 1.562672 ATTGGAGTCCTTGTCCCCCG 61.563 60.000 11.33 0.00 32.49 5.73
3296 4620 2.663196 GAGTCCTTGTCCCCCGTG 59.337 66.667 0.00 0.00 0.00 4.94
3302 4626 0.605589 CCTTGTCCCCCGTGTTCTTC 60.606 60.000 0.00 0.00 0.00 2.87
3316 4640 3.566742 GTGTTCTTCAATAACGGGTTGGT 59.433 43.478 0.00 0.00 0.00 3.67
3331 4655 4.624364 CGGGTTGGTTATCTGTATTGTCCA 60.624 45.833 0.00 0.00 0.00 4.02
3356 4680 1.003112 TGGTTCCATGTACACCGGC 60.003 57.895 0.00 0.00 32.71 6.13
3359 4683 3.961838 TTCCATGTACACCGGCGGC 62.962 63.158 28.71 10.46 0.00 6.53
3429 4753 0.528470 AGTCGTCAGCTTGGTCTAGC 59.472 55.000 0.00 0.00 41.53 3.42
3440 4764 4.585162 AGCTTGGTCTAGCGATATTAGTGT 59.415 41.667 0.00 0.00 45.82 3.55
3443 4767 5.847111 TGGTCTAGCGATATTAGTGTGTT 57.153 39.130 0.00 0.00 0.00 3.32
3444 4768 5.828747 TGGTCTAGCGATATTAGTGTGTTC 58.171 41.667 0.00 0.00 0.00 3.18
3446 4770 5.505324 GGTCTAGCGATATTAGTGTGTTCGT 60.505 44.000 0.00 0.00 32.65 3.85
3459 4783 2.481568 TGTGTTCGTCTGTCTAGTACGG 59.518 50.000 0.00 3.39 37.24 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.407296 AGTTCATCTTGTACTCCCTCCATC 59.593 45.833 0.00 0.00 0.00 3.51
73 74 7.065204 GCTCTTTCGATCTCTCCAATTAGTTTT 59.935 37.037 0.00 0.00 0.00 2.43
111 112 2.732619 GCCCGAGACCTTGGTAGGG 61.733 68.421 17.60 17.60 46.58 3.53
114 115 2.497792 TACCGCCCGAGACCTTGGTA 62.498 60.000 2.82 0.00 31.98 3.25
115 116 3.892104 TACCGCCCGAGACCTTGGT 62.892 63.158 2.82 0.00 31.98 3.67
116 117 3.072468 TACCGCCCGAGACCTTGG 61.072 66.667 0.00 0.00 0.00 3.61
117 118 2.494918 CTACCGCCCGAGACCTTG 59.505 66.667 0.00 0.00 0.00 3.61
119 120 3.292481 TTCCTACCGCCCGAGACCT 62.292 63.158 0.00 0.00 0.00 3.85
121 122 1.318158 TTCTTCCTACCGCCCGAGAC 61.318 60.000 0.00 0.00 0.00 3.36
135 221 1.379176 GCCAGCCCCCTTCTTCTTC 60.379 63.158 0.00 0.00 0.00 2.87
136 222 1.854507 AGCCAGCCCCCTTCTTCTT 60.855 57.895 0.00 0.00 0.00 2.52
137 223 2.204213 AGCCAGCCCCCTTCTTCT 60.204 61.111 0.00 0.00 0.00 2.85
138 224 2.273776 GAGCCAGCCCCCTTCTTC 59.726 66.667 0.00 0.00 0.00 2.87
139 225 3.721706 CGAGCCAGCCCCCTTCTT 61.722 66.667 0.00 0.00 0.00 2.52
153 239 3.706373 CAGGTCCCACCCACCGAG 61.706 72.222 0.00 0.00 39.75 4.63
157 243 4.351054 CTGGCAGGTCCCACCCAC 62.351 72.222 6.61 0.00 39.75 4.61
179 265 0.173255 CAATTAAAGGCCGCAGTGGG 59.827 55.000 1.11 0.00 38.63 4.61
180 266 0.887933 ACAATTAAAGGCCGCAGTGG 59.112 50.000 0.00 0.00 42.50 4.00
181 267 2.030363 TGAACAATTAAAGGCCGCAGTG 60.030 45.455 0.00 0.00 0.00 3.66
182 268 2.235016 TGAACAATTAAAGGCCGCAGT 58.765 42.857 0.00 0.00 0.00 4.40
183 269 3.296322 TTGAACAATTAAAGGCCGCAG 57.704 42.857 0.00 0.00 0.00 5.18
184 270 3.385577 GTTTGAACAATTAAAGGCCGCA 58.614 40.909 0.00 0.00 0.00 5.69
192 453 6.435904 CCTGGTGATAGGGTTTGAACAATTAA 59.564 38.462 0.00 0.00 34.06 1.40
196 457 3.761897 CCTGGTGATAGGGTTTGAACAA 58.238 45.455 0.00 0.00 34.06 2.83
210 471 2.606213 TGCCATCGACCCTGGTGA 60.606 61.111 5.48 0.00 36.10 4.02
213 474 1.443407 CTACTGCCATCGACCCTGG 59.557 63.158 0.00 0.00 36.81 4.45
216 477 0.757935 TACCCTACTGCCATCGACCC 60.758 60.000 0.00 0.00 0.00 4.46
227 488 3.762823 GCGATAGGCTGTTATACCCTACT 59.237 47.826 0.00 0.00 39.11 2.57
283 544 1.883084 CTTATCCACGTCAGCGGCC 60.883 63.158 0.00 0.00 43.45 6.13
319 580 1.678598 TATAACTGCCCACCGTCCGG 61.679 60.000 3.76 3.76 42.03 5.14
333 595 2.729882 GTCGATGACGGCATGGTATAAC 59.270 50.000 9.52 0.00 44.03 1.89
341 603 4.221422 CGGGGTCGATGACGGCAT 62.221 66.667 1.48 1.48 46.58 4.40
346 608 2.473664 CTATCGCCGGGGTCGATGAC 62.474 65.000 21.19 0.00 45.09 3.06
364 626 9.413734 CATTTTTAAGATCTGACCCTTTATCCT 57.586 33.333 0.00 0.00 0.00 3.24
365 627 9.190317 ACATTTTTAAGATCTGACCCTTTATCC 57.810 33.333 0.00 0.00 0.00 2.59
369 631 9.546428 CAAAACATTTTTAAGATCTGACCCTTT 57.454 29.630 0.00 0.00 0.00 3.11
370 632 8.923270 TCAAAACATTTTTAAGATCTGACCCTT 58.077 29.630 0.00 0.81 0.00 3.95
371 633 8.477419 TCAAAACATTTTTAAGATCTGACCCT 57.523 30.769 0.00 0.00 0.00 4.34
372 634 8.978539 GTTCAAAACATTTTTAAGATCTGACCC 58.021 33.333 0.00 0.00 0.00 4.46
373 635 8.978539 GGTTCAAAACATTTTTAAGATCTGACC 58.021 33.333 0.00 0.00 0.00 4.02
374 636 9.528018 TGGTTCAAAACATTTTTAAGATCTGAC 57.472 29.630 0.00 0.00 0.00 3.51
375 637 9.748708 CTGGTTCAAAACATTTTTAAGATCTGA 57.251 29.630 0.00 0.00 0.00 3.27
376 638 9.748708 TCTGGTTCAAAACATTTTTAAGATCTG 57.251 29.630 0.00 0.00 0.00 2.90
377 639 9.971922 CTCTGGTTCAAAACATTTTTAAGATCT 57.028 29.630 0.00 0.00 0.00 2.75
378 640 9.750125 ACTCTGGTTCAAAACATTTTTAAGATC 57.250 29.630 0.00 0.00 0.00 2.75
379 641 9.750125 GACTCTGGTTCAAAACATTTTTAAGAT 57.250 29.630 0.00 0.00 0.00 2.40
380 642 8.744652 TGACTCTGGTTCAAAACATTTTTAAGA 58.255 29.630 0.00 0.00 0.00 2.10
381 643 8.925161 TGACTCTGGTTCAAAACATTTTTAAG 57.075 30.769 0.00 0.00 0.00 1.85
382 644 8.744652 TCTGACTCTGGTTCAAAACATTTTTAA 58.255 29.630 0.00 0.00 0.00 1.52
383 645 8.287439 TCTGACTCTGGTTCAAAACATTTTTA 57.713 30.769 0.00 0.00 0.00 1.52
384 646 7.169158 TCTGACTCTGGTTCAAAACATTTTT 57.831 32.000 0.00 0.00 0.00 1.94
389 651 5.059161 CAGATCTGACTCTGGTTCAAAACA 58.941 41.667 18.34 0.00 39.20 2.83
519 781 1.817099 CAGAGGCGTCCCATGAAGC 60.817 63.158 2.06 0.00 44.12 3.86
558 820 1.556564 CGCTATCGTGTTGTCCGATT 58.443 50.000 0.31 0.00 42.00 3.34
610 872 3.073798 TGTCCAATCAAGGCAAAGGAGTA 59.926 43.478 0.00 0.00 0.00 2.59
657 919 2.681344 GTGGAAATGGGTACGTGATTCC 59.319 50.000 0.00 10.51 37.44 3.01
875 1139 9.649167 TTATATAGCACATGACTGATTGATGAG 57.351 33.333 0.00 0.00 0.00 2.90
886 1150 3.684788 CCGCCCTTTATATAGCACATGAC 59.315 47.826 0.00 0.00 0.00 3.06
985 1262 1.207488 TTCATGGCTGGCTACCTGGT 61.207 55.000 4.05 4.05 0.00 4.00
1432 1764 7.858382 CGTACACAGTAAACCAATTGATCAAAA 59.142 33.333 13.09 0.00 0.00 2.44
1438 1770 5.358090 TCACGTACACAGTAAACCAATTGA 58.642 37.500 7.12 0.00 0.00 2.57
1440 1772 5.585445 TGTTCACGTACACAGTAAACCAATT 59.415 36.000 0.00 0.00 0.00 2.32
1441 1773 5.117584 TGTTCACGTACACAGTAAACCAAT 58.882 37.500 0.00 0.00 0.00 3.16
1442 1774 4.502016 TGTTCACGTACACAGTAAACCAA 58.498 39.130 0.00 0.00 0.00 3.67
1443 1775 4.114073 CTGTTCACGTACACAGTAAACCA 58.886 43.478 15.19 0.00 36.44 3.67
1444 1776 4.362279 TCTGTTCACGTACACAGTAAACC 58.638 43.478 20.25 0.00 41.16 3.27
1445 1777 5.688621 TCATCTGTTCACGTACACAGTAAAC 59.311 40.000 20.25 0.00 41.16 2.01
1446 1778 5.834169 TCATCTGTTCACGTACACAGTAAA 58.166 37.500 20.25 7.20 41.16 2.01
1448 1780 4.082949 CCTCATCTGTTCACGTACACAGTA 60.083 45.833 20.25 11.27 41.16 2.74
1449 1781 3.305403 CCTCATCTGTTCACGTACACAGT 60.305 47.826 20.25 9.54 41.16 3.55
1456 1788 1.821753 CCTCTCCTCATCTGTTCACGT 59.178 52.381 0.00 0.00 0.00 4.49
1457 1789 2.095461 TCCTCTCCTCATCTGTTCACG 58.905 52.381 0.00 0.00 0.00 4.35
1482 1828 4.349503 TTGGTCGGCTGCCTGCAT 62.350 61.111 17.92 0.00 45.15 3.96
1825 2171 0.984230 ATGGATGGGATCGGCGTTAT 59.016 50.000 6.85 0.00 0.00 1.89
1858 2451 5.962433 TCATATATGTAAGTAGGCGCTTCC 58.038 41.667 7.64 0.00 0.00 3.46
1859 2452 7.884816 TTTCATATATGTAAGTAGGCGCTTC 57.115 36.000 7.64 0.00 0.00 3.86
1860 2453 7.878127 ACATTTCATATATGTAAGTAGGCGCTT 59.122 33.333 7.64 0.52 34.59 4.68
2046 3278 7.903946 CGAAAGAGACATGAAAGAATCAATGAG 59.096 37.037 0.00 0.00 42.54 2.90
2047 3279 7.388776 ACGAAAGAGACATGAAAGAATCAATGA 59.611 33.333 0.00 0.00 42.54 2.57
2048 3280 7.524912 ACGAAAGAGACATGAAAGAATCAATG 58.475 34.615 0.00 0.00 42.54 2.82
2049 3281 7.678947 ACGAAAGAGACATGAAAGAATCAAT 57.321 32.000 0.00 0.00 42.54 2.57
2050 3282 7.442364 AGAACGAAAGAGACATGAAAGAATCAA 59.558 33.333 0.00 0.00 42.54 2.57
2051 3283 6.931281 AGAACGAAAGAGACATGAAAGAATCA 59.069 34.615 0.00 0.00 43.67 2.57
2052 3284 7.116948 TGAGAACGAAAGAGACATGAAAGAATC 59.883 37.037 0.00 0.00 0.00 2.52
2313 3548 4.389374 CTGCTAACACTTGAGGGAGAAAA 58.611 43.478 0.00 0.00 0.00 2.29
2342 3577 2.810650 CAACAGTTACGCTAGCTAGGG 58.189 52.381 30.32 30.32 41.49 3.53
2369 3604 6.883756 TCAGTATATGTGAGCAAAAATGGTGA 59.116 34.615 0.00 0.00 0.00 4.02
2493 3733 1.057361 GCGCTGTGACGACGAATTC 59.943 57.895 0.00 0.00 34.06 2.17
2494 3734 1.372997 AGCGCTGTGACGACGAATT 60.373 52.632 10.39 0.00 34.06 2.17
2495 3735 2.088763 CAGCGCTGTGACGACGAAT 61.089 57.895 29.24 0.00 34.06 3.34
2688 3951 3.374678 CAGTAGAGTGGAGAACGAGGTAC 59.625 52.174 0.00 0.00 0.00 3.34
2689 3952 3.607741 CAGTAGAGTGGAGAACGAGGTA 58.392 50.000 0.00 0.00 0.00 3.08
2690 3953 2.438411 CAGTAGAGTGGAGAACGAGGT 58.562 52.381 0.00 0.00 0.00 3.85
2705 3968 5.292765 CCATATTACAGTGAGGTGCAGTAG 58.707 45.833 0.00 0.00 0.00 2.57
2711 3974 2.158957 ACGGCCATATTACAGTGAGGTG 60.159 50.000 2.24 0.00 0.00 4.00
2714 3982 3.309682 CACAACGGCCATATTACAGTGAG 59.690 47.826 2.24 0.00 0.00 3.51
2806 4098 5.681337 TGTGCATAATTTCGACAGTTTGA 57.319 34.783 0.00 0.00 0.00 2.69
2807 4099 5.858049 ACATGTGCATAATTTCGACAGTTTG 59.142 36.000 0.00 0.00 0.00 2.93
2815 4109 4.014847 ACCGAACATGTGCATAATTTCG 57.985 40.909 17.52 17.52 0.00 3.46
2825 4119 2.094258 CCATTCTCGAACCGAACATGTG 59.906 50.000 0.00 0.00 34.74 3.21
2847 4141 1.476085 TGCCAGTTCACCTTTGTGTTG 59.524 47.619 0.00 0.00 43.26 3.33
2850 4144 2.101249 ACAATGCCAGTTCACCTTTGTG 59.899 45.455 0.00 0.00 44.18 3.33
2851 4145 2.101249 CACAATGCCAGTTCACCTTTGT 59.899 45.455 0.00 0.00 0.00 2.83
2900 4195 0.817013 AATTACACCCATGCCAAGCG 59.183 50.000 0.00 0.00 0.00 4.68
2901 4196 1.824230 TCAATTACACCCATGCCAAGC 59.176 47.619 0.00 0.00 0.00 4.01
2902 4197 4.741321 ATTCAATTACACCCATGCCAAG 57.259 40.909 0.00 0.00 0.00 3.61
2903 4198 4.097135 CGTATTCAATTACACCCATGCCAA 59.903 41.667 0.00 0.00 0.00 4.52
2904 4199 3.629855 CGTATTCAATTACACCCATGCCA 59.370 43.478 0.00 0.00 0.00 4.92
2905 4200 3.004315 CCGTATTCAATTACACCCATGCC 59.996 47.826 0.00 0.00 0.00 4.40
2906 4201 3.004315 CCCGTATTCAATTACACCCATGC 59.996 47.826 0.00 0.00 0.00 4.06
2907 4202 4.036262 CACCCGTATTCAATTACACCCATG 59.964 45.833 0.00 0.00 0.00 3.66
2908 4203 4.204012 CACCCGTATTCAATTACACCCAT 58.796 43.478 0.00 0.00 0.00 4.00
2909 4204 3.009253 ACACCCGTATTCAATTACACCCA 59.991 43.478 0.00 0.00 0.00 4.51
2910 4205 3.613030 ACACCCGTATTCAATTACACCC 58.387 45.455 0.00 0.00 0.00 4.61
2911 4206 6.930667 AATACACCCGTATTCAATTACACC 57.069 37.500 0.00 0.00 43.42 4.16
2918 4213 9.887629 TTGTAAGAATAATACACCCGTATTCAA 57.112 29.630 1.30 0.00 43.42 2.69
2919 4214 9.537192 CTTGTAAGAATAATACACCCGTATTCA 57.463 33.333 1.30 0.00 43.42 2.57
2920 4215 9.538508 ACTTGTAAGAATAATACACCCGTATTC 57.461 33.333 1.30 0.00 43.42 1.75
2922 4217 8.480501 ACACTTGTAAGAATAATACACCCGTAT 58.519 33.333 0.00 0.00 40.15 3.06
2923 4218 7.839907 ACACTTGTAAGAATAATACACCCGTA 58.160 34.615 0.00 0.00 33.22 4.02
2924 4219 6.704310 ACACTTGTAAGAATAATACACCCGT 58.296 36.000 0.00 0.00 33.22 5.28
2925 4220 8.598075 GTTACACTTGTAAGAATAATACACCCG 58.402 37.037 1.96 0.00 40.74 5.28
2926 4221 9.662947 AGTTACACTTGTAAGAATAATACACCC 57.337 33.333 1.96 0.00 40.74 4.61
2932 4227 9.374838 CCGGTAAGTTACACTTGTAAGAATAAT 57.625 33.333 14.81 0.00 40.74 1.28
2933 4228 7.331687 GCCGGTAAGTTACACTTGTAAGAATAA 59.668 37.037 14.81 0.00 40.74 1.40
2934 4229 6.813152 GCCGGTAAGTTACACTTGTAAGAATA 59.187 38.462 14.81 0.00 40.74 1.75
2935 4230 5.640783 GCCGGTAAGTTACACTTGTAAGAAT 59.359 40.000 14.81 0.00 40.74 2.40
2936 4231 4.990426 GCCGGTAAGTTACACTTGTAAGAA 59.010 41.667 14.81 0.00 40.74 2.52
2937 4232 4.559153 GCCGGTAAGTTACACTTGTAAGA 58.441 43.478 14.81 0.00 40.74 2.10
2938 4233 3.681417 GGCCGGTAAGTTACACTTGTAAG 59.319 47.826 14.81 0.00 40.74 2.34
2939 4234 3.070734 TGGCCGGTAAGTTACACTTGTAA 59.929 43.478 14.81 0.00 39.11 2.41
2940 4235 2.632028 TGGCCGGTAAGTTACACTTGTA 59.368 45.455 14.81 0.00 39.11 2.41
2941 4236 1.417145 TGGCCGGTAAGTTACACTTGT 59.583 47.619 14.81 0.00 39.11 3.16
2942 4237 2.172851 TGGCCGGTAAGTTACACTTG 57.827 50.000 14.81 1.83 39.11 3.16
2943 4238 2.158784 TGTTGGCCGGTAAGTTACACTT 60.159 45.455 14.81 0.00 41.97 3.16
2944 4239 1.417145 TGTTGGCCGGTAAGTTACACT 59.583 47.619 14.81 0.00 0.00 3.55
2945 4240 1.802365 CTGTTGGCCGGTAAGTTACAC 59.198 52.381 14.81 4.01 0.00 2.90
2946 4241 1.878948 GCTGTTGGCCGGTAAGTTACA 60.879 52.381 14.81 0.00 34.27 2.41
2947 4242 0.800631 GCTGTTGGCCGGTAAGTTAC 59.199 55.000 1.90 4.32 34.27 2.50
2948 4243 0.688487 AGCTGTTGGCCGGTAAGTTA 59.312 50.000 1.90 0.00 43.05 2.24
2949 4244 0.688487 TAGCTGTTGGCCGGTAAGTT 59.312 50.000 1.90 0.00 43.05 2.66
2950 4245 0.909623 ATAGCTGTTGGCCGGTAAGT 59.090 50.000 1.90 0.00 43.05 2.24
2951 4246 2.038387 AATAGCTGTTGGCCGGTAAG 57.962 50.000 1.90 0.00 43.05 2.34
2952 4247 2.361789 GAAATAGCTGTTGGCCGGTAA 58.638 47.619 1.90 0.00 43.05 2.85
2953 4248 1.407712 GGAAATAGCTGTTGGCCGGTA 60.408 52.381 1.90 0.00 43.05 4.02
2954 4249 0.679960 GGAAATAGCTGTTGGCCGGT 60.680 55.000 1.90 0.00 43.05 5.28
2955 4250 1.714899 CGGAAATAGCTGTTGGCCGG 61.715 60.000 22.10 0.00 43.05 6.13
2956 4251 1.714899 CCGGAAATAGCTGTTGGCCG 61.715 60.000 22.59 22.59 43.05 6.13
2957 4252 2.004808 GCCGGAAATAGCTGTTGGCC 62.005 60.000 5.05 8.15 43.05 5.36
2958 4253 1.433471 GCCGGAAATAGCTGTTGGC 59.567 57.895 5.05 7.19 42.19 4.52
2959 4254 1.714899 CGGCCGGAAATAGCTGTTGG 61.715 60.000 20.10 0.00 0.00 3.77
2960 4255 1.714899 CCGGCCGGAAATAGCTGTTG 61.715 60.000 41.82 6.56 37.50 3.33
2961 4256 1.451387 CCGGCCGGAAATAGCTGTT 60.451 57.895 41.82 0.00 37.50 3.16
2962 4257 2.189521 CCGGCCGGAAATAGCTGT 59.810 61.111 41.82 0.00 37.50 4.40
2963 4258 2.504032 TCCGGCCGGAAATAGCTG 59.496 61.111 43.93 15.54 42.05 4.24
2971 4266 1.579084 CGTTTTGATTTCCGGCCGGA 61.579 55.000 42.66 42.66 43.52 5.14
2972 4267 1.154112 CGTTTTGATTTCCGGCCGG 60.154 57.895 39.13 39.13 0.00 6.13
2973 4268 1.154112 CCGTTTTGATTTCCGGCCG 60.154 57.895 21.04 21.04 33.20 6.13
2974 4269 4.880899 CCGTTTTGATTTCCGGCC 57.119 55.556 0.00 0.00 33.20 6.13
2976 4271 1.154112 CCGCCGTTTTGATTTCCGG 60.154 57.895 0.00 0.00 43.22 5.14
2977 4272 1.154112 CCCGCCGTTTTGATTTCCG 60.154 57.895 0.00 0.00 0.00 4.30
2978 4273 1.445410 GCCCGCCGTTTTGATTTCC 60.445 57.895 0.00 0.00 0.00 3.13
2979 4274 1.799916 CGCCCGCCGTTTTGATTTC 60.800 57.895 0.00 0.00 0.00 2.17
2980 4275 2.257067 CGCCCGCCGTTTTGATTT 59.743 55.556 0.00 0.00 0.00 2.17
2981 4276 3.743636 CCGCCCGCCGTTTTGATT 61.744 61.111 0.00 0.00 34.38 2.57
2982 4277 4.708386 TCCGCCCGCCGTTTTGAT 62.708 61.111 0.00 0.00 34.38 2.57
2991 4286 3.718210 CTTACAGACCTCCGCCCGC 62.718 68.421 0.00 0.00 0.00 6.13
2992 4287 1.885163 AACTTACAGACCTCCGCCCG 61.885 60.000 0.00 0.00 0.00 6.13
2993 4288 0.323957 AAACTTACAGACCTCCGCCC 59.676 55.000 0.00 0.00 0.00 6.13
2994 4289 2.180432 AAAACTTACAGACCTCCGCC 57.820 50.000 0.00 0.00 0.00 6.13
2995 4290 4.501921 CGTATAAAACTTACAGACCTCCGC 59.498 45.833 0.00 0.00 0.00 5.54
2996 4291 5.039333 CCGTATAAAACTTACAGACCTCCG 58.961 45.833 0.00 0.00 0.00 4.63
2997 4292 5.105187 ACCCGTATAAAACTTACAGACCTCC 60.105 44.000 0.00 0.00 0.00 4.30
2998 4293 5.809051 CACCCGTATAAAACTTACAGACCTC 59.191 44.000 0.00 0.00 0.00 3.85
2999 4294 5.246883 ACACCCGTATAAAACTTACAGACCT 59.753 40.000 0.00 0.00 0.00 3.85
3000 4295 5.482006 ACACCCGTATAAAACTTACAGACC 58.518 41.667 0.00 0.00 0.00 3.85
3001 4296 8.193438 AGATACACCCGTATAAAACTTACAGAC 58.807 37.037 0.00 0.00 38.48 3.51
3002 4297 8.192774 CAGATACACCCGTATAAAACTTACAGA 58.807 37.037 0.00 0.00 38.48 3.41
3003 4298 7.437267 CCAGATACACCCGTATAAAACTTACAG 59.563 40.741 0.00 0.00 38.48 2.74
3004 4299 7.123997 TCCAGATACACCCGTATAAAACTTACA 59.876 37.037 0.00 0.00 38.48 2.41
3005 4300 7.491682 TCCAGATACACCCGTATAAAACTTAC 58.508 38.462 0.00 0.00 38.48 2.34
3006 4301 7.658525 TCCAGATACACCCGTATAAAACTTA 57.341 36.000 0.00 0.00 38.48 2.24
3007 4302 6.549433 TCCAGATACACCCGTATAAAACTT 57.451 37.500 0.00 0.00 38.48 2.66
3008 4303 6.549433 TTCCAGATACACCCGTATAAAACT 57.451 37.500 0.00 0.00 38.48 2.66
3009 4304 6.987992 TCATTCCAGATACACCCGTATAAAAC 59.012 38.462 0.00 0.00 38.48 2.43
3010 4305 7.127012 TCATTCCAGATACACCCGTATAAAA 57.873 36.000 0.00 0.00 38.48 1.52
3011 4306 6.734502 TCATTCCAGATACACCCGTATAAA 57.265 37.500 0.00 0.00 38.48 1.40
3012 4307 6.734502 TTCATTCCAGATACACCCGTATAA 57.265 37.500 0.00 0.00 38.48 0.98
3013 4308 6.734502 TTTCATTCCAGATACACCCGTATA 57.265 37.500 0.00 0.00 38.48 1.47
3014 4309 5.623956 TTTCATTCCAGATACACCCGTAT 57.376 39.130 0.00 0.00 41.16 3.06
3015 4310 5.180271 GTTTTCATTCCAGATACACCCGTA 58.820 41.667 0.00 0.00 0.00 4.02
3016 4311 3.992943 TTTCATTCCAGATACACCCGT 57.007 42.857 0.00 0.00 0.00 5.28
3017 4312 3.063452 CGTTTTCATTCCAGATACACCCG 59.937 47.826 0.00 0.00 0.00 5.28
3018 4313 4.258543 TCGTTTTCATTCCAGATACACCC 58.741 43.478 0.00 0.00 0.00 4.61
3019 4314 7.548196 TTATCGTTTTCATTCCAGATACACC 57.452 36.000 0.00 0.00 0.00 4.16
3020 4315 8.283291 GGATTATCGTTTTCATTCCAGATACAC 58.717 37.037 0.00 0.00 0.00 2.90
3021 4316 7.990314 TGGATTATCGTTTTCATTCCAGATACA 59.010 33.333 0.00 0.00 0.00 2.29
3022 4317 8.378172 TGGATTATCGTTTTCATTCCAGATAC 57.622 34.615 0.00 0.00 0.00 2.24
3023 4318 8.972458 TTGGATTATCGTTTTCATTCCAGATA 57.028 30.769 0.00 0.00 33.63 1.98
3024 4319 7.469181 GCTTGGATTATCGTTTTCATTCCAGAT 60.469 37.037 0.00 0.00 33.63 2.90
3025 4320 6.183360 GCTTGGATTATCGTTTTCATTCCAGA 60.183 38.462 0.00 0.00 33.63 3.86
3026 4321 5.973565 GCTTGGATTATCGTTTTCATTCCAG 59.026 40.000 0.00 0.00 33.63 3.86
3027 4322 5.417266 TGCTTGGATTATCGTTTTCATTCCA 59.583 36.000 0.00 0.00 0.00 3.53
3028 4323 5.890334 TGCTTGGATTATCGTTTTCATTCC 58.110 37.500 0.00 0.00 0.00 3.01
3029 4324 7.463251 GCTTTGCTTGGATTATCGTTTTCATTC 60.463 37.037 0.00 0.00 0.00 2.67
3030 4325 6.311200 GCTTTGCTTGGATTATCGTTTTCATT 59.689 34.615 0.00 0.00 0.00 2.57
3031 4326 5.807011 GCTTTGCTTGGATTATCGTTTTCAT 59.193 36.000 0.00 0.00 0.00 2.57
3032 4327 5.160641 GCTTTGCTTGGATTATCGTTTTCA 58.839 37.500 0.00 0.00 0.00 2.69
3033 4328 4.562789 GGCTTTGCTTGGATTATCGTTTTC 59.437 41.667 0.00 0.00 0.00 2.29
3034 4329 4.220602 AGGCTTTGCTTGGATTATCGTTTT 59.779 37.500 0.00 0.00 0.00 2.43
3035 4330 3.763897 AGGCTTTGCTTGGATTATCGTTT 59.236 39.130 0.00 0.00 0.00 3.60
3036 4331 3.356290 AGGCTTTGCTTGGATTATCGTT 58.644 40.909 0.00 0.00 0.00 3.85
3037 4332 3.004752 AGGCTTTGCTTGGATTATCGT 57.995 42.857 0.00 0.00 0.00 3.73
3038 4333 5.163663 TGTTTAGGCTTTGCTTGGATTATCG 60.164 40.000 0.00 0.00 0.00 2.92
3039 4334 6.207691 TGTTTAGGCTTTGCTTGGATTATC 57.792 37.500 0.00 0.00 0.00 1.75
3040 4335 6.211384 ACTTGTTTAGGCTTTGCTTGGATTAT 59.789 34.615 0.00 0.00 0.00 1.28
3041 4336 5.538433 ACTTGTTTAGGCTTTGCTTGGATTA 59.462 36.000 0.00 0.00 0.00 1.75
3042 4337 4.344968 ACTTGTTTAGGCTTTGCTTGGATT 59.655 37.500 0.00 0.00 0.00 3.01
3043 4338 3.897505 ACTTGTTTAGGCTTTGCTTGGAT 59.102 39.130 0.00 0.00 0.00 3.41
3044 4339 3.295973 ACTTGTTTAGGCTTTGCTTGGA 58.704 40.909 0.00 0.00 0.00 3.53
3045 4340 3.733443 ACTTGTTTAGGCTTTGCTTGG 57.267 42.857 0.00 0.00 0.00 3.61
3046 4341 5.220643 CCAAAACTTGTTTAGGCTTTGCTTG 60.221 40.000 0.00 0.00 33.10 4.01
3047 4342 4.875536 CCAAAACTTGTTTAGGCTTTGCTT 59.124 37.500 0.00 0.00 33.10 3.91
3048 4343 4.081142 ACCAAAACTTGTTTAGGCTTTGCT 60.081 37.500 0.00 0.00 33.10 3.91
3049 4344 4.188462 ACCAAAACTTGTTTAGGCTTTGC 58.812 39.130 0.00 0.00 33.10 3.68
3050 4345 5.872070 TGAACCAAAACTTGTTTAGGCTTTG 59.128 36.000 0.00 0.00 33.71 2.77
3051 4346 6.043854 TGAACCAAAACTTGTTTAGGCTTT 57.956 33.333 0.00 0.00 0.00 3.51
3052 4347 5.669164 TGAACCAAAACTTGTTTAGGCTT 57.331 34.783 0.00 0.00 0.00 4.35
3053 4348 5.186992 AGTTGAACCAAAACTTGTTTAGGCT 59.813 36.000 0.00 0.00 34.16 4.58
3054 4349 5.416083 AGTTGAACCAAAACTTGTTTAGGC 58.584 37.500 0.00 0.00 34.16 3.93
3055 4350 6.863275 AGAGTTGAACCAAAACTTGTTTAGG 58.137 36.000 0.00 0.00 37.98 2.69
3056 4351 9.849166 TTTAGAGTTGAACCAAAACTTGTTTAG 57.151 29.630 0.00 0.00 37.98 1.85
3057 4352 9.628746 GTTTAGAGTTGAACCAAAACTTGTTTA 57.371 29.630 9.26 0.00 37.98 2.01
3058 4353 7.327518 CGTTTAGAGTTGAACCAAAACTTGTTT 59.672 33.333 12.69 0.00 37.98 2.83
3059 4354 6.804783 CGTTTAGAGTTGAACCAAAACTTGTT 59.195 34.615 12.69 0.00 37.98 2.83
3060 4355 6.319399 CGTTTAGAGTTGAACCAAAACTTGT 58.681 36.000 12.69 0.00 37.98 3.16
3061 4356 5.741982 CCGTTTAGAGTTGAACCAAAACTTG 59.258 40.000 12.69 4.34 37.98 3.16
3062 4357 5.677852 GCCGTTTAGAGTTGAACCAAAACTT 60.678 40.000 12.69 0.00 37.98 2.66
3063 4358 4.201980 GCCGTTTAGAGTTGAACCAAAACT 60.202 41.667 12.69 0.00 40.54 2.66
3064 4359 4.039703 GCCGTTTAGAGTTGAACCAAAAC 58.960 43.478 0.00 0.14 0.00 2.43
3065 4360 3.695060 TGCCGTTTAGAGTTGAACCAAAA 59.305 39.130 0.00 0.00 0.00 2.44
3079 4374 0.676466 CAGCCATCCAGTGCCGTTTA 60.676 55.000 0.00 0.00 0.00 2.01
3088 4383 2.960384 TGATATTTTGGCAGCCATCCAG 59.040 45.455 17.09 0.00 34.66 3.86
3170 4465 6.819649 CGTCACCTTGACCCAAAAATATACTA 59.180 38.462 0.76 0.00 44.20 1.82
3182 4477 0.320508 GAGAACCGTCACCTTGACCC 60.321 60.000 0.76 0.00 44.20 4.46
3213 4508 5.817816 GGACTTTTATTCGAGATGACACCAT 59.182 40.000 0.00 0.00 35.29 3.55
3238 4533 3.762407 TCAAACTGGATTGAAGTCGGA 57.238 42.857 0.00 0.00 36.42 4.55
3245 4540 3.057969 AGCGTCATCAAACTGGATTGA 57.942 42.857 1.48 1.48 43.03 2.57
3252 4547 1.603802 CACACCAAGCGTCATCAAACT 59.396 47.619 0.00 0.00 0.00 2.66
3253 4548 1.334960 CCACACCAAGCGTCATCAAAC 60.335 52.381 0.00 0.00 0.00 2.93
3257 4552 1.308069 ATGCCACACCAAGCGTCATC 61.308 55.000 0.00 0.00 0.00 2.92
3258 4553 0.895100 AATGCCACACCAAGCGTCAT 60.895 50.000 0.00 0.00 0.00 3.06
3260 4555 1.081242 CAATGCCACACCAAGCGTC 60.081 57.895 0.00 0.00 0.00 5.19
3261 4556 2.563798 CCAATGCCACACCAAGCGT 61.564 57.895 0.00 0.00 0.00 5.07
3262 4557 2.203972 CTCCAATGCCACACCAAGCG 62.204 60.000 0.00 0.00 0.00 4.68
3263 4558 1.181098 ACTCCAATGCCACACCAAGC 61.181 55.000 0.00 0.00 0.00 4.01
3264 4559 0.883833 GACTCCAATGCCACACCAAG 59.116 55.000 0.00 0.00 0.00 3.61
3266 4561 1.074775 GGACTCCAATGCCACACCA 59.925 57.895 0.00 0.00 0.00 4.17
3283 4607 0.605589 GAAGAACACGGGGGACAAGG 60.606 60.000 0.00 0.00 0.00 3.61
3294 4618 3.566742 ACCAACCCGTTATTGAAGAACAC 59.433 43.478 3.47 0.00 0.00 3.32
3296 4620 4.841443 AACCAACCCGTTATTGAAGAAC 57.159 40.909 0.00 0.00 0.00 3.01
3302 4626 7.066525 ACAATACAGATAACCAACCCGTTATTG 59.933 37.037 0.00 0.00 38.70 1.90
3316 4640 3.069016 ACGCCGATGGACAATACAGATAA 59.931 43.478 0.00 0.00 0.00 1.75
3331 4655 0.461339 GTACATGGAACCACGCCGAT 60.461 55.000 0.00 0.00 0.00 4.18
3417 4741 4.585162 ACACTAATATCGCTAGACCAAGCT 59.415 41.667 0.00 0.00 40.49 3.74
3429 4753 5.570344 AGACAGACGAACACACTAATATCG 58.430 41.667 0.00 0.00 39.30 2.92
3440 4764 2.079158 CCCGTACTAGACAGACGAACA 58.921 52.381 0.00 0.00 38.88 3.18
3443 4767 0.745845 GCCCCGTACTAGACAGACGA 60.746 60.000 0.00 0.00 38.88 4.20
3444 4768 1.726265 GCCCCGTACTAGACAGACG 59.274 63.158 0.00 0.49 36.36 4.18
3446 4770 0.745845 GTCGCCCCGTACTAGACAGA 60.746 60.000 0.00 0.00 32.57 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.