Multiple sequence alignment - TraesCS3D01G428900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G428900 chr3D 100.000 5752 0 0 925 6676 543509452 543503701 0.000000e+00 10623.0
1 TraesCS3D01G428900 chr3D 100.000 1508 0 0 6996 8503 543503381 543501874 0.000000e+00 2785.0
2 TraesCS3D01G428900 chr3D 100.000 684 0 0 1 684 543510376 543509693 0.000000e+00 1264.0
3 TraesCS3D01G428900 chr3A 96.380 5774 134 28 967 6675 680359357 680353594 0.000000e+00 9435.0
4 TraesCS3D01G428900 chr3A 88.555 1564 97 45 6996 8503 680353566 680352029 0.000000e+00 1821.0
5 TraesCS3D01G428900 chr3A 89.205 667 41 9 1 661 680360175 680359534 0.000000e+00 804.0
6 TraesCS3D01G428900 chr3B 96.197 5785 155 25 939 6675 719092119 719086352 0.000000e+00 9404.0
7 TraesCS3D01G428900 chr3B 94.182 911 38 8 6996 7905 719086324 719085428 0.000000e+00 1375.0
8 TraesCS3D01G428900 chr3B 91.036 647 27 11 38 683 719093082 719092466 0.000000e+00 845.0
9 TraesCS3D01G428900 chr3B 92.754 345 20 3 8163 8503 719085236 719084893 2.130000e-135 494.0
10 TraesCS3D01G428900 chr3B 88.525 61 6 1 941 1000 800424542 800424482 1.180000e-08 73.1
11 TraesCS3D01G428900 chr7A 91.407 803 34 11 3403 4190 575280817 575280035 0.000000e+00 1068.0
12 TraesCS3D01G428900 chr7A 93.902 82 5 0 4678 4759 575275790 575275709 3.220000e-24 124.0
13 TraesCS3D01G428900 chr7A 90.196 51 5 0 3581 3631 35092043 35092093 5.510000e-07 67.6
14 TraesCS3D01G428900 chr7A 100.000 33 0 0 4640 4672 575275816 575275784 2.560000e-05 62.1
15 TraesCS3D01G428900 chrUn 100.000 386 0 0 4256 4641 480633002 480632617 0.000000e+00 713.0
16 TraesCS3D01G428900 chr2B 84.173 556 58 20 2787 3332 32099875 32100410 5.890000e-141 512.0
17 TraesCS3D01G428900 chr2B 94.828 58 3 0 943 1000 116833763 116833706 3.270000e-14 91.6
18 TraesCS3D01G428900 chr6A 89.865 148 5 1 4708 4855 437967361 437967224 1.890000e-41 182.0
19 TraesCS3D01G428900 chr5A 89.865 148 5 1 4708 4855 515747092 515747229 1.890000e-41 182.0
20 TraesCS3D01G428900 chr7B 94.828 58 3 0 943 1000 725272554 725272497 3.270000e-14 91.6
21 TraesCS3D01G428900 chr5B 94.828 58 3 0 943 1000 248559099 248559156 3.270000e-14 91.6
22 TraesCS3D01G428900 chr5B 94.828 58 3 0 943 1000 683945464 683945407 3.270000e-14 91.6
23 TraesCS3D01G428900 chr6B 93.333 60 3 1 943 1001 44866161 44866102 4.230000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G428900 chr3D 543501874 543510376 8502 True 4890.666667 10623 100.00000 1 8503 3 chr3D.!!$R1 8502
1 TraesCS3D01G428900 chr3A 680352029 680360175 8146 True 4020.000000 9435 91.38000 1 8503 3 chr3A.!!$R1 8502
2 TraesCS3D01G428900 chr3B 719084893 719093082 8189 True 3029.500000 9404 93.54225 38 8503 4 chr3B.!!$R2 8465
3 TraesCS3D01G428900 chr7A 575280035 575280817 782 True 1068.000000 1068 91.40700 3403 4190 1 chr7A.!!$R1 787
4 TraesCS3D01G428900 chr2B 32099875 32100410 535 False 512.000000 512 84.17300 2787 3332 1 chr2B.!!$F1 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.164002 GAGAAAAGAGAACGTGCCGC 59.836 55.0 0.00 0.00 0.00 6.53 F
269 274 0.183492 AGAAGCCAACACTGGAGCAA 59.817 50.0 0.00 0.00 46.92 3.91 F
272 277 0.395586 AGCCAACACTGGAGCAACAA 60.396 50.0 0.00 0.00 46.92 2.83 F
1535 1638 0.744414 AGTGCGTGTGTGAGCTGTTT 60.744 50.0 0.00 0.00 0.00 2.83 F
1771 1903 0.825840 TTTGGGTGCTGGTACAAGCC 60.826 55.0 19.74 10.58 38.70 4.35 F
3256 3395 0.031111 ACTATCCTACTGGCCAGGCA 60.031 55.0 35.42 21.77 32.82 4.75 F
4116 4285 2.935238 GCTTGGTGTAAATGAGCGGAGA 60.935 50.0 0.00 0.00 0.00 3.71 F
5076 5276 0.598065 GTCCAAATCAAAGCCACGCT 59.402 50.0 0.00 0.00 42.56 5.07 F
5972 6172 0.604578 CAATTGGTTGGGAGTGCCAG 59.395 55.0 2.68 0.00 35.15 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 1944 0.322816 TCAAGCAAGGACCCATGAGC 60.323 55.000 0.00 0.0 0.00 4.26 R
2216 2348 1.421646 AGCAGCCTTACAGGAAGTGTT 59.578 47.619 0.00 0.0 40.94 3.32 R
2333 2465 2.992124 TCACACGTCCTTTCTCCAAA 57.008 45.000 0.00 0.0 0.00 3.28 R
2360 2492 1.142667 CCAGGGGCAAAACCAACATTT 59.857 47.619 0.00 0.0 42.05 2.32 R
3598 3737 3.445008 TCCAGAGTCTGCCTTAGATGTT 58.555 45.455 15.10 0.0 37.83 2.71 R
4129 4298 0.620556 GGAATGTCCTTGGGAGCTGA 59.379 55.000 0.00 0.0 32.53 4.26 R
5966 6166 0.745845 CCTGGCTACATCACTGGCAC 60.746 60.000 0.00 0.0 32.87 5.01 R
6276 6488 2.276732 TGGCCTCTGGAAAAGTGAAG 57.723 50.000 3.32 0.0 0.00 3.02 R
7891 8108 0.388391 ATGCCAAATGCCACGTTTCG 60.388 50.000 0.00 0.0 40.16 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.839063 TGTCAAGGAAGGTAGAGAAAAGAGA 59.161 40.000 0.00 0.00 0.00 3.10
29 30 4.833938 AGGAAGGTAGAGAAAAGAGAACGT 59.166 41.667 0.00 0.00 0.00 3.99
34 35 0.164002 GAGAAAAGAGAACGTGCCGC 59.836 55.000 0.00 0.00 0.00 6.53
35 36 0.249911 AGAAAAGAGAACGTGCCGCT 60.250 50.000 0.00 0.00 0.00 5.52
36 37 1.000506 AGAAAAGAGAACGTGCCGCTA 59.999 47.619 0.00 0.00 0.00 4.26
95 96 0.955905 TTTTAGGGTTTGCACGAGGC 59.044 50.000 0.00 0.00 45.13 4.70
208 213 1.668751 TCTCGCGCAAGTTTTCACTTT 59.331 42.857 8.75 0.00 40.66 2.66
232 237 9.601971 TTTGAAAATTTTAGAGTCGTATTTCGG 57.398 29.630 2.75 0.00 40.32 4.30
233 238 8.314143 TGAAAATTTTAGAGTCGTATTTCGGT 57.686 30.769 2.75 0.00 40.32 4.69
234 239 9.421806 TGAAAATTTTAGAGTCGTATTTCGGTA 57.578 29.630 2.75 0.00 40.32 4.02
235 240 9.680946 GAAAATTTTAGAGTCGTATTTCGGTAC 57.319 33.333 2.75 0.00 40.32 3.34
236 241 8.761575 AAATTTTAGAGTCGTATTTCGGTACA 57.238 30.769 0.00 0.00 40.32 2.90
237 242 7.982371 ATTTTAGAGTCGTATTTCGGTACAG 57.018 36.000 0.00 0.00 40.32 2.74
238 243 6.741992 TTTAGAGTCGTATTTCGGTACAGA 57.258 37.500 0.00 0.00 40.32 3.41
239 244 4.879104 AGAGTCGTATTTCGGTACAGAG 57.121 45.455 0.00 0.00 40.32 3.35
240 245 3.626670 AGAGTCGTATTTCGGTACAGAGG 59.373 47.826 0.00 0.00 40.32 3.69
241 246 3.350833 AGTCGTATTTCGGTACAGAGGT 58.649 45.455 0.00 0.00 40.32 3.85
242 247 4.517285 AGTCGTATTTCGGTACAGAGGTA 58.483 43.478 0.00 0.00 40.32 3.08
243 248 4.574013 AGTCGTATTTCGGTACAGAGGTAG 59.426 45.833 0.00 0.00 40.32 3.18
244 249 4.333926 GTCGTATTTCGGTACAGAGGTAGT 59.666 45.833 0.00 0.00 40.32 2.73
263 268 5.179555 GGTAGTAGAAAAGAAGCCAACACTG 59.820 44.000 0.00 0.00 0.00 3.66
269 274 0.183492 AGAAGCCAACACTGGAGCAA 59.817 50.000 0.00 0.00 46.92 3.91
272 277 0.395586 AGCCAACACTGGAGCAACAA 60.396 50.000 0.00 0.00 46.92 2.83
286 291 1.989165 GCAACAACGCAAACAACTGAA 59.011 42.857 0.00 0.00 0.00 3.02
287 292 2.410053 GCAACAACGCAAACAACTGAAA 59.590 40.909 0.00 0.00 0.00 2.69
385 391 1.378646 GCCCTAACAACCTCCCTGC 60.379 63.158 0.00 0.00 0.00 4.85
430 436 5.152623 AGAAATAAAGCAGGGAAAAAGGC 57.847 39.130 0.00 0.00 0.00 4.35
495 501 1.739049 CTCTCATCAGCGTCCCTCC 59.261 63.158 0.00 0.00 0.00 4.30
496 502 1.743321 CTCTCATCAGCGTCCCTCCC 61.743 65.000 0.00 0.00 0.00 4.30
497 503 1.760086 CTCATCAGCGTCCCTCCCT 60.760 63.158 0.00 0.00 0.00 4.20
498 504 1.743321 CTCATCAGCGTCCCTCCCTC 61.743 65.000 0.00 0.00 0.00 4.30
1321 1420 1.600413 GCTGCTTCGGTTCTGTTTTGG 60.600 52.381 0.00 0.00 0.00 3.28
1323 1422 2.096248 TGCTTCGGTTCTGTTTTGGTT 58.904 42.857 0.00 0.00 0.00 3.67
1480 1579 3.626244 CGTGTGTTCGTGCGTGCT 61.626 61.111 0.00 0.00 0.00 4.40
1492 1591 0.813610 TGCGTGCTACTGTGTGCTTT 60.814 50.000 8.58 0.00 0.00 3.51
1535 1638 0.744414 AGTGCGTGTGTGAGCTGTTT 60.744 50.000 0.00 0.00 0.00 2.83
1539 1642 1.467374 GCGTGTGTGAGCTGTTTTTGT 60.467 47.619 0.00 0.00 0.00 2.83
1541 1644 2.159585 CGTGTGTGAGCTGTTTTTGTGA 60.160 45.455 0.00 0.00 0.00 3.58
1713 1819 7.275920 GTGTCCTATTTCTGTATCCATTCAGT 58.724 38.462 0.00 0.00 33.89 3.41
1715 1821 6.642950 GTCCTATTTCTGTATCCATTCAGTCG 59.357 42.308 0.00 0.00 33.89 4.18
1730 1836 2.066262 CAGTCGTGTGTGGGTGTAATC 58.934 52.381 0.00 0.00 0.00 1.75
1745 1851 6.043938 TGGGTGTAATCAGGAGTTTTAAGTCT 59.956 38.462 0.00 0.00 0.00 3.24
1746 1852 6.940867 GGGTGTAATCAGGAGTTTTAAGTCTT 59.059 38.462 0.00 0.00 0.00 3.01
1749 1855 9.052759 GTGTAATCAGGAGTTTTAAGTCTTTGA 57.947 33.333 0.00 3.45 0.00 2.69
1763 1895 4.019174 AGTCTTTGATATTTGGGTGCTGG 58.981 43.478 0.00 0.00 0.00 4.85
1771 1903 0.825840 TTTGGGTGCTGGTACAAGCC 60.826 55.000 19.74 10.58 38.70 4.35
1811 1943 2.295349 CACCTGTTTGCAGATTTCAGCT 59.705 45.455 0.00 0.00 45.28 4.24
1812 1944 2.295349 ACCTGTTTGCAGATTTCAGCTG 59.705 45.455 7.63 7.63 45.28 4.24
1991 2123 2.434359 CGGGAAGTGGAGAACCGC 60.434 66.667 0.00 0.00 46.05 5.68
2360 2492 3.071023 AGAAAGGACGTGTGAAGGAATCA 59.929 43.478 0.00 0.00 35.05 2.57
2539 2671 4.157656 TGACATATACAGGCAACAAAAGGC 59.842 41.667 0.00 0.00 41.41 4.35
2673 2805 2.821969 ACACTTTAGCAATGCCCTTCAG 59.178 45.455 0.00 0.00 0.00 3.02
2883 3019 3.871594 GGGATGCATATATTACCGTCTGC 59.128 47.826 0.00 0.00 0.00 4.26
2901 3037 5.295292 CGTCTGCCATATGATTCTTCTGTTT 59.705 40.000 3.65 0.00 0.00 2.83
3256 3395 0.031111 ACTATCCTACTGGCCAGGCA 60.031 55.000 35.42 21.77 32.82 4.75
3388 3527 3.312890 AGTCTCCTGGTATGAAGATGGG 58.687 50.000 0.00 0.00 0.00 4.00
3591 3730 4.867086 ACTTCTGGTTCTTTTGGGAAGAA 58.133 39.130 0.00 0.00 35.55 2.52
3598 3737 5.837979 TGGTTCTTTTGGGAAGAATGATCAA 59.162 36.000 0.00 0.00 38.39 2.57
3631 3770 4.197750 CAGACTCTGGAAATTATGCAGCT 58.802 43.478 0.00 0.00 46.32 4.24
3783 3922 9.845396 TCAGGATGCTGAAGGTTAGTTTCCTTC 62.845 44.444 15.31 15.21 46.97 3.46
4116 4285 2.935238 GCTTGGTGTAAATGAGCGGAGA 60.935 50.000 0.00 0.00 0.00 3.71
4129 4298 0.958876 GCGGAGAAATCCCAAACCGT 60.959 55.000 0.00 0.00 41.92 4.83
4152 4334 0.698238 CTCCCAAGGACATTCCACCA 59.302 55.000 0.00 0.00 39.61 4.17
4969 5169 4.805192 CACAACAATTGGCCAATGCTATAC 59.195 41.667 31.28 0.00 37.74 1.47
4971 5171 2.622942 ACAATTGGCCAATGCTATACGG 59.377 45.455 31.28 14.79 37.74 4.02
5037 5237 2.878935 GCCAATGGATGATCCTAGCCAG 60.879 54.545 13.44 0.00 37.46 4.85
5073 5273 4.082733 GGAACTAGTCCAAATCAAAGCCAC 60.083 45.833 0.00 0.00 46.97 5.01
5076 5276 0.598065 GTCCAAATCAAAGCCACGCT 59.402 50.000 0.00 0.00 42.56 5.07
5158 5358 0.965866 TGACCATCTCGACCGAAGCT 60.966 55.000 0.00 0.00 0.00 3.74
5469 5669 4.516652 AAATAGCCTGATGGAAGCTTCT 57.483 40.909 25.05 7.19 38.06 2.85
5689 5889 3.438781 GGCATCATTTGGACGTAAAGACA 59.561 43.478 0.00 0.00 0.00 3.41
5827 6027 3.371965 GGACAGGATGGACCAACTACTA 58.628 50.000 0.00 0.00 43.62 1.82
5972 6172 0.604578 CAATTGGTTGGGAGTGCCAG 59.395 55.000 2.68 0.00 35.15 4.85
6100 6300 5.305585 TCCGCACTCCTATTTTCATTATCC 58.694 41.667 0.00 0.00 0.00 2.59
6111 6311 8.699130 CCTATTTTCATTATCCTTTTGAAGCCT 58.301 33.333 0.00 0.00 31.54 4.58
6114 6314 6.764308 TTCATTATCCTTTTGAAGCCTCAG 57.236 37.500 0.00 0.00 31.69 3.35
6116 6316 6.666678 TCATTATCCTTTTGAAGCCTCAGAT 58.333 36.000 0.00 0.00 31.69 2.90
6117 6317 6.544931 TCATTATCCTTTTGAAGCCTCAGATG 59.455 38.462 0.00 0.00 31.69 2.90
6125 6325 4.908601 TGAAGCCTCAGATGGAACTTTA 57.091 40.909 0.00 0.00 0.00 1.85
6127 6327 5.819991 TGAAGCCTCAGATGGAACTTTAAT 58.180 37.500 0.00 0.00 0.00 1.40
6203 6406 5.695816 GCACTCATCCAAGTTCTGATATCTC 59.304 44.000 3.98 0.00 0.00 2.75
6204 6407 6.222389 CACTCATCCAAGTTCTGATATCTCC 58.778 44.000 3.98 0.00 0.00 3.71
6205 6408 5.901853 ACTCATCCAAGTTCTGATATCTCCA 59.098 40.000 3.98 0.00 0.00 3.86
6206 6409 6.558014 ACTCATCCAAGTTCTGATATCTCCAT 59.442 38.462 3.98 0.00 0.00 3.41
6208 6411 7.222161 TCATCCAAGTTCTGATATCTCCATTG 58.778 38.462 3.98 3.37 0.00 2.82
6298 6510 2.795329 TCACTTTTCCAGAGGCCATTC 58.205 47.619 5.01 0.00 0.00 2.67
6376 6589 6.041637 TGAACACACAGTTGGTTCTCTAGTAT 59.958 38.462 12.92 0.00 41.51 2.12
6478 6693 1.147376 ACAGCAAACCCACACGCTA 59.853 52.632 0.00 0.00 32.29 4.26
6486 6701 0.039326 ACCCACACGCTACTACCTCT 59.961 55.000 0.00 0.00 0.00 3.69
6531 6746 4.042809 TCTTCAGCCATTAGGTCCAAGAAA 59.957 41.667 0.00 0.00 37.19 2.52
6601 6816 5.104485 ACCTAACTGTGTGGTTTTCTTCTCT 60.104 40.000 0.00 0.00 0.00 3.10
6610 6825 2.031069 GGTTTTCTTCTCTTGCGGAACC 60.031 50.000 0.00 0.00 0.00 3.62
6614 6829 3.802948 TCTTCTCTTGCGGAACCTATC 57.197 47.619 0.00 0.00 0.00 2.08
6618 6833 2.166459 TCTCTTGCGGAACCTATCTGTG 59.834 50.000 0.00 0.00 36.73 3.66
6619 6834 1.899814 TCTTGCGGAACCTATCTGTGT 59.100 47.619 0.00 0.00 36.73 3.72
7097 7313 3.916776 GCTTCAAATGTTCTGCTTACTGC 59.083 43.478 0.00 0.00 43.25 4.40
7119 7335 5.188555 TGCTCTGACTTGAGGATTCTACAAT 59.811 40.000 0.00 0.00 34.82 2.71
7134 7350 9.892130 GGATTCTACAATAGGGTATAGGATTTG 57.108 37.037 0.00 0.00 0.00 2.32
7197 7413 3.273434 TGTGCAGAGCATAAGATGGAAC 58.727 45.455 0.00 0.00 41.91 3.62
7199 7415 1.869767 GCAGAGCATAAGATGGAACCG 59.130 52.381 0.00 0.00 0.00 4.44
7322 7538 3.251004 GTCCTTCGTTCAGTGAAATGCTT 59.749 43.478 7.25 0.00 0.00 3.91
7370 7586 1.960040 ATGACGCCTCTGAATCCGCA 61.960 55.000 0.00 0.00 0.00 5.69
7515 7731 1.346395 ACGACTAACATGCTTGGGTCA 59.654 47.619 16.40 0.00 0.00 4.02
7704 7920 2.992689 TGTACCTGCGCCCTCGAA 60.993 61.111 4.18 0.00 38.10 3.71
7753 7969 0.033208 ACACCGGAATCATGGGCATT 60.033 50.000 9.46 0.00 0.00 3.56
7801 8017 8.680903 CAGTGCAAGGAAGTATCATCTTAATTT 58.319 33.333 0.00 0.00 0.00 1.82
7812 8028 7.882271 AGTATCATCTTAATTTCTCAGGCCATC 59.118 37.037 5.01 0.00 0.00 3.51
7813 8029 6.005066 TCATCTTAATTTCTCAGGCCATCA 57.995 37.500 5.01 0.00 0.00 3.07
7814 8030 6.607970 TCATCTTAATTTCTCAGGCCATCAT 58.392 36.000 5.01 0.00 0.00 2.45
7815 8031 7.064866 TCATCTTAATTTCTCAGGCCATCATT 58.935 34.615 5.01 0.00 0.00 2.57
7816 8032 7.562454 TCATCTTAATTTCTCAGGCCATCATTT 59.438 33.333 5.01 0.00 0.00 2.32
7817 8033 7.104043 TCTTAATTTCTCAGGCCATCATTTG 57.896 36.000 5.01 0.00 0.00 2.32
7818 8034 6.664816 TCTTAATTTCTCAGGCCATCATTTGT 59.335 34.615 5.01 0.00 0.00 2.83
7843 8060 2.556114 CCCTCCCTGATTGAACAAGCTT 60.556 50.000 0.00 0.00 0.00 3.74
7849 8066 3.005050 CCTGATTGAACAAGCTTGCTTCA 59.995 43.478 26.58 26.58 31.37 3.02
7858 8075 6.753279 TGAACAAGCTTGCTTCATTATAATGC 59.247 34.615 26.58 9.48 36.36 3.56
7862 8079 7.490402 ACAAGCTTGCTTCATTATAATGCTTTC 59.510 33.333 26.27 9.35 36.30 2.62
7877 8094 3.650139 TGCTTTCTCGGTTACAGTCTTC 58.350 45.455 0.00 0.00 0.00 2.87
7879 8096 3.675698 GCTTTCTCGGTTACAGTCTTCAG 59.324 47.826 0.00 0.00 0.00 3.02
7880 8097 4.558898 GCTTTCTCGGTTACAGTCTTCAGA 60.559 45.833 0.00 0.00 0.00 3.27
7891 8108 2.941720 CAGTCTTCAGAAATAGCAGCCC 59.058 50.000 0.00 0.00 0.00 5.19
7926 8158 1.550524 GGCATGTGAGTCAGTACTGGA 59.449 52.381 22.48 6.95 35.56 3.86
7943 8175 2.890311 CTGGATTCTCGAGCTGTAGGAT 59.110 50.000 7.81 0.00 0.00 3.24
7950 8182 4.938080 TCTCGAGCTGTAGGATTGATTTC 58.062 43.478 7.81 0.00 0.00 2.17
7959 8191 6.688922 GCTGTAGGATTGATTTCCAGGATGTA 60.689 42.308 0.00 0.00 38.32 2.29
7965 8197 7.041721 GGATTGATTTCCAGGATGTAAAAACC 58.958 38.462 0.00 0.00 35.72 3.27
7967 8199 8.893563 ATTGATTTCCAGGATGTAAAAACCTA 57.106 30.769 0.00 0.00 32.35 3.08
8013 8249 8.186821 ACTGCTTAAAACAGATGATTATGAAGC 58.813 33.333 11.17 0.00 38.55 3.86
8018 8254 7.707624 AAAACAGATGATTATGAAGCCAGAA 57.292 32.000 0.00 0.00 0.00 3.02
8038 8274 6.183360 CCAGAAATGGAATCCTAAACGAACTC 60.183 42.308 0.00 0.00 0.00 3.01
8039 8275 6.595716 CAGAAATGGAATCCTAAACGAACTCT 59.404 38.462 0.00 0.00 0.00 3.24
8040 8276 7.119846 CAGAAATGGAATCCTAAACGAACTCTT 59.880 37.037 0.00 0.00 0.00 2.85
8041 8277 6.743575 AATGGAATCCTAAACGAACTCTTG 57.256 37.500 0.00 0.00 0.00 3.02
8042 8278 5.223449 TGGAATCCTAAACGAACTCTTGT 57.777 39.130 0.00 0.00 0.00 3.16
8043 8279 5.617252 TGGAATCCTAAACGAACTCTTGTT 58.383 37.500 0.00 0.00 39.42 2.83
8044 8280 6.059484 TGGAATCCTAAACGAACTCTTGTTT 58.941 36.000 0.00 0.00 41.00 2.83
8045 8281 6.544564 TGGAATCCTAAACGAACTCTTGTTTT 59.455 34.615 0.00 0.00 39.00 2.43
8047 8283 8.562052 GGAATCCTAAACGAACTCTTGTTTTTA 58.438 33.333 0.00 0.00 39.00 1.52
8048 8284 9.378597 GAATCCTAAACGAACTCTTGTTTTTAC 57.621 33.333 0.00 0.00 39.00 2.01
8049 8285 8.672823 ATCCTAAACGAACTCTTGTTTTTACT 57.327 30.769 0.00 0.00 39.00 2.24
8050 8286 9.768662 ATCCTAAACGAACTCTTGTTTTTACTA 57.231 29.630 0.00 0.00 39.00 1.82
8051 8287 9.598517 TCCTAAACGAACTCTTGTTTTTACTAA 57.401 29.630 0.00 0.00 39.00 2.24
8052 8288 9.859692 CCTAAACGAACTCTTGTTTTTACTAAG 57.140 33.333 0.00 0.00 39.00 2.18
8092 8332 4.804665 TGACATTTGTCTTGTTTGTGCATG 59.195 37.500 11.67 0.00 44.99 4.06
8096 8336 1.955778 TGTCTTGTTTGTGCATGGGAG 59.044 47.619 0.00 0.00 0.00 4.30
8110 8350 0.039618 TGGGAGTGCAAAAGGGGATC 59.960 55.000 0.00 0.00 0.00 3.36
8130 8370 7.012799 GGGGATCTGAGTTGATTGTAAAATCTC 59.987 40.741 7.16 1.19 0.00 2.75
8136 8377 9.956720 CTGAGTTGATTGTAAAATCTCTTTGTT 57.043 29.630 7.16 0.00 0.00 2.83
8173 8439 3.005684 TCAAATGCACGCTCATTCCTTTT 59.994 39.130 0.00 0.00 35.77 2.27
8207 8477 4.866508 TGACTAGTGTCGTGGAAGAAAT 57.133 40.909 0.00 0.00 45.70 2.17
8213 8483 6.817140 ACTAGTGTCGTGGAAGAAATTAATCC 59.183 38.462 0.00 0.00 0.00 3.01
8217 8488 6.747280 GTGTCGTGGAAGAAATTAATCCATTG 59.253 38.462 9.28 6.54 44.55 2.82
8258 8529 6.809869 ACTTTCTTGTGAAAATCAAAGAGGG 58.190 36.000 0.00 0.00 41.09 4.30
8269 8540 3.312736 TCAAAGAGGGCCTGAAAAACT 57.687 42.857 12.95 0.00 0.00 2.66
8270 8541 2.958355 TCAAAGAGGGCCTGAAAAACTG 59.042 45.455 12.95 0.00 0.00 3.16
8271 8542 2.958355 CAAAGAGGGCCTGAAAAACTGA 59.042 45.455 12.95 0.00 0.00 3.41
8272 8543 2.278332 AGAGGGCCTGAAAAACTGAC 57.722 50.000 12.95 0.00 0.00 3.51
8273 8544 1.494721 AGAGGGCCTGAAAAACTGACA 59.505 47.619 12.95 0.00 0.00 3.58
8274 8545 1.882623 GAGGGCCTGAAAAACTGACAG 59.117 52.381 12.95 0.00 0.00 3.51
8275 8546 1.215423 AGGGCCTGAAAAACTGACAGT 59.785 47.619 4.50 1.07 0.00 3.55
8331 8606 3.173151 GTTTTCCCCAGGTGATTTGGAT 58.827 45.455 0.00 0.00 37.96 3.41
8397 8672 3.052082 CGTGCAAGCCAGGACAGG 61.052 66.667 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.386350 GCACGTTCTCTTTTCTCTACCTTC 59.614 45.833 0.00 0.00 0.00 3.46
29 30 1.678728 CCATTTCTGACCTTAGCGGCA 60.679 52.381 1.45 0.00 35.61 5.69
34 35 1.065418 ACGGCCCATTTCTGACCTTAG 60.065 52.381 0.00 0.00 0.00 2.18
35 36 0.988832 ACGGCCCATTTCTGACCTTA 59.011 50.000 0.00 0.00 0.00 2.69
36 37 0.609131 CACGGCCCATTTCTGACCTT 60.609 55.000 0.00 0.00 0.00 3.50
95 96 4.559386 GCGCGGCGTCATCGAAAG 62.559 66.667 24.46 0.00 39.71 2.62
208 213 8.314143 ACCGAAATACGACTCTAAAATTTTCA 57.686 30.769 6.72 0.00 45.77 2.69
224 229 7.559590 TTCTACTACCTCTGTACCGAAATAC 57.440 40.000 0.00 0.00 0.00 1.89
225 230 8.579850 TTTTCTACTACCTCTGTACCGAAATA 57.420 34.615 0.00 0.00 0.00 1.40
226 231 7.395489 TCTTTTCTACTACCTCTGTACCGAAAT 59.605 37.037 0.00 0.00 0.00 2.17
227 232 6.716628 TCTTTTCTACTACCTCTGTACCGAAA 59.283 38.462 0.00 0.00 0.00 3.46
228 233 6.240894 TCTTTTCTACTACCTCTGTACCGAA 58.759 40.000 0.00 0.00 0.00 4.30
229 234 5.809001 TCTTTTCTACTACCTCTGTACCGA 58.191 41.667 0.00 0.00 0.00 4.69
230 235 6.506500 TTCTTTTCTACTACCTCTGTACCG 57.493 41.667 0.00 0.00 0.00 4.02
231 236 6.331845 GCTTCTTTTCTACTACCTCTGTACC 58.668 44.000 0.00 0.00 0.00 3.34
232 237 6.071503 TGGCTTCTTTTCTACTACCTCTGTAC 60.072 42.308 0.00 0.00 0.00 2.90
233 238 6.014647 TGGCTTCTTTTCTACTACCTCTGTA 58.985 40.000 0.00 0.00 0.00 2.74
234 239 4.838986 TGGCTTCTTTTCTACTACCTCTGT 59.161 41.667 0.00 0.00 0.00 3.41
235 240 5.407407 TGGCTTCTTTTCTACTACCTCTG 57.593 43.478 0.00 0.00 0.00 3.35
236 241 5.307196 TGTTGGCTTCTTTTCTACTACCTCT 59.693 40.000 0.00 0.00 0.00 3.69
237 242 5.408909 GTGTTGGCTTCTTTTCTACTACCTC 59.591 44.000 0.00 0.00 0.00 3.85
238 243 5.071923 AGTGTTGGCTTCTTTTCTACTACCT 59.928 40.000 0.00 0.00 0.00 3.08
239 244 5.179555 CAGTGTTGGCTTCTTTTCTACTACC 59.820 44.000 0.00 0.00 0.00 3.18
240 245 5.179555 CCAGTGTTGGCTTCTTTTCTACTAC 59.820 44.000 0.00 0.00 37.73 2.73
241 246 5.071250 TCCAGTGTTGGCTTCTTTTCTACTA 59.929 40.000 0.00 0.00 44.63 1.82
242 247 4.137543 CCAGTGTTGGCTTCTTTTCTACT 58.862 43.478 0.00 0.00 37.73 2.57
243 248 4.134563 TCCAGTGTTGGCTTCTTTTCTAC 58.865 43.478 0.00 0.00 44.63 2.59
244 249 4.389374 CTCCAGTGTTGGCTTCTTTTCTA 58.611 43.478 0.00 0.00 44.63 2.10
263 268 0.920664 GTTGTTTGCGTTGTTGCTCC 59.079 50.000 0.00 0.00 35.36 4.70
269 274 3.498082 GTCTTTCAGTTGTTTGCGTTGT 58.502 40.909 0.00 0.00 0.00 3.32
272 277 1.063469 CCGTCTTTCAGTTGTTTGCGT 59.937 47.619 0.00 0.00 0.00 5.24
286 291 2.907042 AGAAAAGTGATCTCCCCGTCTT 59.093 45.455 0.00 0.00 0.00 3.01
287 292 2.498078 GAGAAAAGTGATCTCCCCGTCT 59.502 50.000 0.00 0.00 37.86 4.18
495 501 2.737180 CGATGGGGGATGACGAGG 59.263 66.667 0.00 0.00 0.00 4.63
496 502 2.029666 GCGATGGGGGATGACGAG 59.970 66.667 0.00 0.00 0.00 4.18
497 503 3.546543 GGCGATGGGGGATGACGA 61.547 66.667 0.00 0.00 0.00 4.20
498 504 3.521529 GAGGCGATGGGGGATGACG 62.522 68.421 0.00 0.00 0.00 4.35
1321 1420 7.011016 AGCTAATACCAAAACAAAGCAAACAAC 59.989 33.333 0.00 0.00 0.00 3.32
1323 1422 6.478344 CAGCTAATACCAAAACAAAGCAAACA 59.522 34.615 0.00 0.00 0.00 2.83
1480 1579 2.638480 AGGCAAGAAAGCACACAGTA 57.362 45.000 0.00 0.00 35.83 2.74
1535 1638 4.909696 ATCCATCAAACACGTTCACAAA 57.090 36.364 0.00 0.00 0.00 2.83
1539 1642 3.669536 TGCTATCCATCAAACACGTTCA 58.330 40.909 0.00 0.00 0.00 3.18
1541 1644 3.378112 CCATGCTATCCATCAAACACGTT 59.622 43.478 0.00 0.00 29.71 3.99
1713 1819 1.001520 CCTGATTACACCCACACACGA 59.998 52.381 0.00 0.00 0.00 4.35
1715 1821 2.038557 ACTCCTGATTACACCCACACAC 59.961 50.000 0.00 0.00 0.00 3.82
1730 1836 9.846248 CCAAATATCAAAGACTTAAAACTCCTG 57.154 33.333 0.00 0.00 0.00 3.86
1745 1851 4.667573 TGTACCAGCACCCAAATATCAAA 58.332 39.130 0.00 0.00 0.00 2.69
1746 1852 4.308526 TGTACCAGCACCCAAATATCAA 57.691 40.909 0.00 0.00 0.00 2.57
1749 1855 3.023832 GCTTGTACCAGCACCCAAATAT 58.976 45.455 13.78 0.00 39.83 1.28
1763 1895 4.693566 TGCACAGTTAATACAGGCTTGTAC 59.306 41.667 11.29 0.88 42.29 2.90
1811 1943 0.609957 CAAGCAAGGACCCATGAGCA 60.610 55.000 0.00 0.00 0.00 4.26
1812 1944 0.322816 TCAAGCAAGGACCCATGAGC 60.323 55.000 0.00 0.00 0.00 4.26
1991 2123 1.658596 TCAGATCGGCGATCGTTTTTG 59.341 47.619 35.80 28.84 43.17 2.44
2216 2348 1.421646 AGCAGCCTTACAGGAAGTGTT 59.578 47.619 0.00 0.00 40.94 3.32
2333 2465 2.992124 TCACACGTCCTTTCTCCAAA 57.008 45.000 0.00 0.00 0.00 3.28
2360 2492 1.142667 CCAGGGGCAAAACCAACATTT 59.857 47.619 0.00 0.00 42.05 2.32
2539 2671 3.672511 GCCATCTTCAAATGACTGCACAG 60.673 47.826 0.00 0.00 0.00 3.66
2673 2805 4.665833 ACAGCCACTTTAAAAGAAACCC 57.334 40.909 0.00 0.00 0.00 4.11
2883 3019 6.690098 CGCAAAGAAACAGAAGAATCATATGG 59.310 38.462 2.13 0.00 0.00 2.74
3388 3527 5.066505 CACAGGTAGCTCCAATCCAAAATAC 59.933 44.000 0.00 0.00 39.02 1.89
3591 3730 5.999044 AGTCTGCCTTAGATGTTTGATCAT 58.001 37.500 0.00 0.00 37.83 2.45
3598 3737 3.445008 TCCAGAGTCTGCCTTAGATGTT 58.555 45.455 15.10 0.00 37.83 2.71
4116 4285 1.534729 GAGCTGACGGTTTGGGATTT 58.465 50.000 0.00 0.00 0.00 2.17
4129 4298 0.620556 GGAATGTCCTTGGGAGCTGA 59.379 55.000 0.00 0.00 32.53 4.26
4152 4334 1.335145 GCCCATGCCTGATATTTGCT 58.665 50.000 0.00 0.00 0.00 3.91
4245 4427 3.618019 GCCCTGACATGTTTGCATCATTT 60.618 43.478 0.00 0.00 31.99 2.32
5037 5237 3.858247 ACTAGTTCCTGTGCGGATAAAC 58.142 45.455 0.00 0.00 42.70 2.01
5073 5273 1.813513 ATTGACCAAGTCTGGAAGCG 58.186 50.000 0.00 0.00 46.92 4.68
5076 5276 3.762407 TCGAATTGACCAAGTCTGGAA 57.238 42.857 8.29 0.00 46.92 3.53
5364 5564 1.228063 CTCCTGCAGCCTGTGTTGT 60.228 57.895 8.66 0.00 0.00 3.32
5443 5643 3.490419 GCTTCCATCAGGCTATTTTGCAG 60.490 47.826 0.00 0.00 33.74 4.41
5469 5669 1.028130 TTTGCAACTGGTTGATGCGA 58.972 45.000 16.41 0.27 45.83 5.10
5689 5889 2.615912 GCTGTGCAAAGAGTGAAGAAGT 59.384 45.455 8.49 0.00 0.00 3.01
5966 6166 0.745845 CCTGGCTACATCACTGGCAC 60.746 60.000 0.00 0.00 32.87 5.01
5972 6172 3.274288 CTTTTCCTCCTGGCTACATCAC 58.726 50.000 0.00 0.00 0.00 3.06
6100 6300 4.077822 AGTTCCATCTGAGGCTTCAAAAG 58.922 43.478 0.00 0.00 31.69 2.27
6127 6327 9.926158 TTGTAGAAACACACTTTATATCGGTAA 57.074 29.630 0.00 0.00 34.61 2.85
6179 6382 5.609423 AGATATCAGAACTTGGATGAGTGC 58.391 41.667 5.32 0.00 0.00 4.40
6180 6383 6.183360 TGGAGATATCAGAACTTGGATGAGTG 60.183 42.308 5.32 0.00 0.00 3.51
6183 6386 7.222161 CAATGGAGATATCAGAACTTGGATGA 58.778 38.462 5.32 0.00 0.00 2.92
6270 6482 5.106118 GGCCTCTGGAAAAGTGAAGATAAAC 60.106 44.000 0.00 0.00 0.00 2.01
6276 6488 2.276732 TGGCCTCTGGAAAAGTGAAG 57.723 50.000 3.32 0.00 0.00 3.02
6298 6510 9.849166 ATAACAATTTGGACAAGTAAAATACCG 57.151 29.630 0.78 0.00 0.00 4.02
6486 6701 2.835701 GATCCGTTGACGCTGCCTGA 62.836 60.000 0.00 0.00 38.18 3.86
6566 6781 2.884012 CACAGTTAGGTTGAACATGGCA 59.116 45.455 0.00 0.00 0.00 4.92
6601 6816 2.851263 AACACAGATAGGTTCCGCAA 57.149 45.000 0.00 0.00 0.00 4.85
6643 6858 8.208718 TGGACTTAACATTAATATGACAGTGC 57.791 34.615 0.00 0.00 35.65 4.40
7004 7219 5.728351 TTTTTACTATCCATCGAAAGCGG 57.272 39.130 0.00 0.00 38.28 5.52
7027 7242 4.202409 GCTGAAACTGGCCTATATCCTTCT 60.202 45.833 3.32 0.00 0.00 2.85
7097 7313 7.432869 CCTATTGTAGAATCCTCAAGTCAGAG 58.567 42.308 0.00 0.00 35.39 3.35
7165 7381 2.480037 TGCTCTGCACAACAAGATTACG 59.520 45.455 0.00 0.00 31.71 3.18
7322 7538 1.271926 GGGGGCTTCTTTGTGCTCTTA 60.272 52.381 0.00 0.00 0.00 2.10
7397 7613 6.199908 GCTTTCCTTTCTTTGCTTTCTTCTTC 59.800 38.462 0.00 0.00 0.00 2.87
7515 7731 3.510753 TGAGCATGTACACAAAATGGCAT 59.489 39.130 0.00 0.00 0.00 4.40
7565 7781 2.983192 TCCACAGGAAGGAATGTTACCA 59.017 45.455 0.00 0.00 30.71 3.25
7686 7902 2.573609 ATTCGAGGGCGCAGGTACAC 62.574 60.000 10.83 0.00 37.46 2.90
7687 7903 1.895020 AATTCGAGGGCGCAGGTACA 61.895 55.000 10.83 0.00 37.46 2.90
7753 7969 6.437477 ACTGTACAAGGAGATCACTGACATAA 59.563 38.462 0.00 0.00 0.00 1.90
7801 8017 3.091545 GGAAACAAATGATGGCCTGAGA 58.908 45.455 3.32 0.00 0.00 3.27
7812 8028 2.603075 TCAGGGAGGGGAAACAAATG 57.397 50.000 0.00 0.00 0.00 2.32
7813 8029 3.077391 TCAATCAGGGAGGGGAAACAAAT 59.923 43.478 0.00 0.00 0.00 2.32
7814 8030 2.448961 TCAATCAGGGAGGGGAAACAAA 59.551 45.455 0.00 0.00 0.00 2.83
7815 8031 2.069775 TCAATCAGGGAGGGGAAACAA 58.930 47.619 0.00 0.00 0.00 2.83
7816 8032 1.753903 TCAATCAGGGAGGGGAAACA 58.246 50.000 0.00 0.00 0.00 2.83
7817 8033 2.225017 TGTTCAATCAGGGAGGGGAAAC 60.225 50.000 0.00 0.00 0.00 2.78
7818 8034 2.069775 TGTTCAATCAGGGAGGGGAAA 58.930 47.619 0.00 0.00 0.00 3.13
7843 8060 5.822519 ACCGAGAAAGCATTATAATGAAGCA 59.177 36.000 26.22 0.00 38.70 3.91
7849 8066 8.204836 AGACTGTAACCGAGAAAGCATTATAAT 58.795 33.333 0.00 0.00 0.00 1.28
7858 8075 5.122512 TCTGAAGACTGTAACCGAGAAAG 57.877 43.478 0.00 0.00 0.00 2.62
7862 8079 5.517054 GCTATTTCTGAAGACTGTAACCGAG 59.483 44.000 0.00 0.00 0.00 4.63
7877 8094 1.062587 CGTTTCGGGCTGCTATTTCTG 59.937 52.381 0.00 0.00 0.00 3.02
7879 8096 1.084289 ACGTTTCGGGCTGCTATTTC 58.916 50.000 0.00 0.00 0.00 2.17
7880 8097 0.802494 CACGTTTCGGGCTGCTATTT 59.198 50.000 0.00 0.00 0.00 1.40
7891 8108 0.388391 ATGCCAAATGCCACGTTTCG 60.388 50.000 0.00 0.00 40.16 3.46
7926 8158 5.543507 AATCAATCCTACAGCTCGAGAAT 57.456 39.130 18.75 0.00 0.00 2.40
7943 8175 8.713708 TTAGGTTTTTACATCCTGGAAATCAA 57.286 30.769 0.00 0.00 28.96 2.57
7950 8182 6.264518 ACTGTGTTTAGGTTTTTACATCCTGG 59.735 38.462 0.00 0.00 33.34 4.45
7967 8199 9.726438 AAGCAGTCTAATCTAATTACTGTGTTT 57.274 29.630 0.00 0.00 0.00 2.83
7988 8220 7.646922 GGCTTCATAATCATCTGTTTTAAGCAG 59.353 37.037 2.31 2.31 37.84 4.24
7992 8224 8.806429 TCTGGCTTCATAATCATCTGTTTTAA 57.194 30.769 0.00 0.00 0.00 1.52
8002 8238 6.266103 GGATTCCATTTCTGGCTTCATAATCA 59.734 38.462 0.00 0.00 42.80 2.57
8013 8249 5.648092 AGTTCGTTTAGGATTCCATTTCTGG 59.352 40.000 5.29 0.00 44.64 3.86
8018 8254 6.238648 ACAAGAGTTCGTTTAGGATTCCATT 58.761 36.000 5.29 0.00 0.00 3.16
8071 8310 4.121317 CCATGCACAAACAAGACAAATGT 58.879 39.130 0.00 0.00 0.00 2.71
8078 8318 1.955778 CACTCCCATGCACAAACAAGA 59.044 47.619 0.00 0.00 0.00 3.02
8092 8332 0.332972 AGATCCCCTTTTGCACTCCC 59.667 55.000 0.00 0.00 0.00 4.30
8096 8336 2.206576 ACTCAGATCCCCTTTTGCAC 57.793 50.000 0.00 0.00 0.00 4.57
8110 8350 9.956720 AACAAAGAGATTTTACAATCAACTCAG 57.043 29.630 4.50 3.14 41.37 3.35
8139 8380 4.789481 GCGTGCATTTGAGTTTCAGAGAAA 60.789 41.667 0.00 0.00 0.00 2.52
8141 8382 2.224079 GCGTGCATTTGAGTTTCAGAGA 59.776 45.455 0.00 0.00 0.00 3.10
8144 8385 2.031769 TGAGCGTGCATTTGAGTTTCAG 60.032 45.455 0.00 0.00 0.00 3.02
8152 8393 2.642139 AAGGAATGAGCGTGCATTTG 57.358 45.000 0.00 0.00 38.53 2.32
8160 8401 8.464770 TTCATTTTGATTAAAAGGAATGAGCG 57.535 30.769 16.00 0.00 45.87 5.03
8173 8439 8.655970 CACGACACTAGTCATTCATTTTGATTA 58.344 33.333 0.00 0.00 45.23 1.75
8226 8497 8.924511 TGATTTTCACAAGAAAGTAGGAGAAT 57.075 30.769 0.00 0.00 44.03 2.40
8231 8502 8.078596 CCTCTTTGATTTTCACAAGAAAGTAGG 58.921 37.037 0.00 0.00 44.03 3.18
8236 8507 5.453198 GGCCCTCTTTGATTTTCACAAGAAA 60.453 40.000 0.00 0.00 41.78 2.52
8258 8529 4.036852 AGCTAAACTGTCAGTTTTTCAGGC 59.963 41.667 30.56 24.10 45.38 4.85
8269 8540 4.127171 GTTTGTGGAGAGCTAAACTGTCA 58.873 43.478 0.00 0.00 40.48 3.58
8270 8541 3.498777 GGTTTGTGGAGAGCTAAACTGTC 59.501 47.826 7.31 0.00 37.96 3.51
8271 8542 3.477530 GGTTTGTGGAGAGCTAAACTGT 58.522 45.455 7.31 0.00 34.40 3.55
8272 8543 2.814336 GGGTTTGTGGAGAGCTAAACTG 59.186 50.000 7.31 0.00 34.40 3.16
8273 8544 2.224793 GGGGTTTGTGGAGAGCTAAACT 60.225 50.000 7.31 0.00 34.40 2.66
8274 8545 2.160205 GGGGTTTGTGGAGAGCTAAAC 58.840 52.381 0.00 0.00 33.48 2.01
8275 8546 1.777878 TGGGGTTTGTGGAGAGCTAAA 59.222 47.619 0.00 0.00 0.00 1.85
8331 8606 0.108019 CTCCCTGCTGAGCATATGCA 59.892 55.000 28.62 8.99 45.16 3.96
8390 8665 0.389391 CGCGATACCAATCCTGTCCT 59.611 55.000 0.00 0.00 0.00 3.85
8397 8672 0.582005 GGAACAGCGCGATACCAATC 59.418 55.000 12.10 0.00 0.00 2.67
8454 8729 1.692148 TATGCCGTTTCTGCGCTTCG 61.692 55.000 9.73 6.14 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.