Multiple sequence alignment - TraesCS3D01G428300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G428300 chr3D 100.000 3734 0 0 1 3734 542821475 542825208 0.000000e+00 6896.0
1 TraesCS3D01G428300 chr3D 90.278 144 12 2 3453 3594 542824766 542824909 1.770000e-43 187.0
2 TraesCS3D01G428300 chr3D 90.278 144 12 2 3292 3435 542824927 542825068 1.770000e-43 187.0
3 TraesCS3D01G428300 chr3A 89.479 1882 114 37 1 1825 679503433 679505287 0.000000e+00 2302.0
4 TraesCS3D01G428300 chr3A 91.185 987 63 13 2281 3262 679505998 679506965 0.000000e+00 1319.0
5 TraesCS3D01G428300 chr3A 90.156 833 55 9 1 828 657118707 657119517 0.000000e+00 1059.0
6 TraesCS3D01G428300 chr3A 90.909 440 27 6 3298 3734 679506964 679507393 2.500000e-161 579.0
7 TraesCS3D01G428300 chr3A 91.549 142 11 1 3294 3435 679507122 679507262 1.060000e-45 195.0
8 TraesCS3D01G428300 chr3A 89.928 139 11 3 3459 3594 679506964 679507102 3.830000e-40 176.0
9 TraesCS3D01G428300 chr3A 91.935 62 2 2 2044 2105 599863806 599863748 2.390000e-12 84.2
10 TraesCS3D01G428300 chr7B 90.492 1525 112 17 1 1510 598640500 598642006 0.000000e+00 1982.0
11 TraesCS3D01G428300 chr7B 90.361 1525 111 18 1 1510 598608257 598609760 0.000000e+00 1969.0
12 TraesCS3D01G428300 chr7B 91.128 1206 63 18 1 1204 644928198 644929361 0.000000e+00 1594.0
13 TraesCS3D01G428300 chr7B 93.158 950 49 8 1 937 643744919 643745865 0.000000e+00 1380.0
14 TraesCS3D01G428300 chr7B 92.552 725 42 5 1 720 598923171 598923888 0.000000e+00 1029.0
15 TraesCS3D01G428300 chr7B 95.402 348 16 0 925 1272 598925025 598925372 4.210000e-154 555.0
16 TraesCS3D01G428300 chr7B 93.966 348 20 1 925 1272 643746852 643747198 3.300000e-145 525.0
17 TraesCS3D01G428300 chr7B 81.988 322 39 13 1200 1510 644938411 644938724 4.790000e-64 255.0
18 TraesCS3D01G428300 chr7B 91.667 60 2 2 2046 2105 123782864 123782920 3.090000e-11 80.5
19 TraesCS3D01G428300 chr3B 88.343 1587 116 33 296 1844 718686122 718687677 0.000000e+00 1842.0
20 TraesCS3D01G428300 chr3B 90.881 987 66 13 2281 3262 718688277 718689244 0.000000e+00 1303.0
21 TraesCS3D01G428300 chr3B 90.909 440 27 6 3298 3734 718689243 718689672 2.500000e-161 579.0
22 TraesCS3D01G428300 chr3B 94.702 302 14 2 1 301 718680644 718680944 5.650000e-128 468.0
23 TraesCS3D01G428300 chr3B 90.845 142 12 1 3294 3435 718689401 718689541 4.920000e-44 189.0
24 TraesCS3D01G428300 chr3B 90.647 139 10 3 3459 3594 718689243 718689381 8.240000e-42 182.0
25 TraesCS3D01G428300 chr1D 89.847 847 54 5 1 837 402721945 402721121 0.000000e+00 1059.0
26 TraesCS3D01G428300 chr1D 93.333 60 1 2 2046 2105 105352523 105352467 6.640000e-13 86.1
27 TraesCS3D01G428300 chr1A 85.760 941 82 20 1 921 497962387 497961479 0.000000e+00 948.0
28 TraesCS3D01G428300 chr5D 94.828 58 0 2 2048 2105 332041790 332041736 1.850000e-13 87.9
29 TraesCS3D01G428300 chr4B 97.959 49 1 0 2046 2094 31520473 31520521 6.640000e-13 86.1
30 TraesCS3D01G428300 chr5B 93.103 58 1 2 2048 2105 387741731 387741677 8.600000e-12 82.4
31 TraesCS3D01G428300 chr2B 93.103 58 1 2 2048 2105 385195424 385195478 8.600000e-12 82.4
32 TraesCS3D01G428300 chr7A 94.444 54 0 3 2052 2105 498590381 498590331 3.090000e-11 80.5
33 TraesCS3D01G428300 chr7A 90.323 62 2 3 2045 2105 126855334 126855276 1.110000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G428300 chr3D 542821475 542825208 3733 False 2423.333333 6896 93.518667 1 3734 3 chr3D.!!$F1 3733
1 TraesCS3D01G428300 chr3A 657118707 657119517 810 False 1059.000000 1059 90.156000 1 828 1 chr3A.!!$F1 827
2 TraesCS3D01G428300 chr3A 679503433 679507393 3960 False 914.200000 2302 90.610000 1 3734 5 chr3A.!!$F2 3733
3 TraesCS3D01G428300 chr7B 598640500 598642006 1506 False 1982.000000 1982 90.492000 1 1510 1 chr7B.!!$F3 1509
4 TraesCS3D01G428300 chr7B 598608257 598609760 1503 False 1969.000000 1969 90.361000 1 1510 1 chr7B.!!$F2 1509
5 TraesCS3D01G428300 chr7B 644928198 644929361 1163 False 1594.000000 1594 91.128000 1 1204 1 chr7B.!!$F4 1203
6 TraesCS3D01G428300 chr7B 643744919 643747198 2279 False 952.500000 1380 93.562000 1 1272 2 chr7B.!!$F7 1271
7 TraesCS3D01G428300 chr7B 598923171 598925372 2201 False 792.000000 1029 93.977000 1 1272 2 chr7B.!!$F6 1271
8 TraesCS3D01G428300 chr3B 718686122 718689672 3550 False 819.000000 1842 90.325000 296 3734 5 chr3B.!!$F2 3438
9 TraesCS3D01G428300 chr1D 402721121 402721945 824 True 1059.000000 1059 89.847000 1 837 1 chr1D.!!$R2 836
10 TraesCS3D01G428300 chr1A 497961479 497962387 908 True 948.000000 948 85.760000 1 921 1 chr1A.!!$R1 920

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 173 0.106918 ACCGGTTGACCAAGAAGCAA 60.107 50.0 0.0 0.0 35.14 3.91 F
1310 2380 0.171455 GCTCCTGTCTGTCTGTACGG 59.829 60.0 0.0 0.0 0.00 4.02 F
1372 2449 0.036765 AAGGCGTTTCTGTATGGCGA 60.037 50.0 0.0 0.0 34.98 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1353 2430 0.036765 TCGCCATACAGAAACGCCTT 60.037 50.000 0.0 0.0 0.00 4.35 R
2652 4085 0.839853 AAGTTCCCTCTGCTCTGGCT 60.840 55.000 0.0 0.0 39.59 4.75 R
3254 4690 1.004044 CTCCAGGTGGTCAAGCAGAAT 59.996 52.381 0.0 0.0 36.34 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 5.772825 AAAGCAGAGTCTGTTTTGCAATA 57.227 34.783 27.85 0.00 41.81 1.90
172 173 0.106918 ACCGGTTGACCAAGAAGCAA 60.107 50.000 0.00 0.00 35.14 3.91
306 316 2.579738 GGAAGGCGTCCAGGAGAC 59.420 66.667 14.94 0.00 46.97 3.36
370 381 2.338984 GTGTTCTCTGGCGTCGGT 59.661 61.111 0.00 0.00 0.00 4.69
412 435 2.707849 GCGCCAGGGAGTACTCGAA 61.708 63.158 16.56 0.00 0.00 3.71
440 463 2.185608 GGAGGCTCGGCTTGACTC 59.814 66.667 8.69 1.47 0.00 3.36
619 677 2.515071 ATGCAGGGATCGAGAGGCC 61.515 63.158 0.00 0.00 0.00 5.19
929 997 1.421646 CCCACCCTTATCACCTCATCC 59.578 57.143 0.00 0.00 0.00 3.51
1310 2380 0.171455 GCTCCTGTCTGTCTGTACGG 59.829 60.000 0.00 0.00 0.00 4.02
1313 2383 1.251527 CCTGTCTGTCTGTACGGCCT 61.252 60.000 0.00 0.00 31.50 5.19
1317 2387 0.251209 TCTGTCTGTACGGCCTGTCT 60.251 55.000 0.00 0.00 31.50 3.41
1352 2429 3.618507 GCTTGCTCCTGTCAGTGAGTAAT 60.619 47.826 16.39 0.00 33.66 1.89
1353 2430 4.382040 GCTTGCTCCTGTCAGTGAGTAATA 60.382 45.833 16.39 3.24 33.66 0.98
1354 2431 5.724328 CTTGCTCCTGTCAGTGAGTAATAA 58.276 41.667 16.39 9.00 33.66 1.40
1356 2433 4.160439 TGCTCCTGTCAGTGAGTAATAAGG 59.840 45.833 15.53 0.00 0.00 2.69
1357 2434 4.688021 CTCCTGTCAGTGAGTAATAAGGC 58.312 47.826 0.00 0.00 0.00 4.35
1358 2435 3.130516 TCCTGTCAGTGAGTAATAAGGCG 59.869 47.826 0.00 0.00 0.00 5.52
1359 2436 3.119101 CCTGTCAGTGAGTAATAAGGCGT 60.119 47.826 0.00 0.00 0.00 5.68
1361 2438 4.890088 TGTCAGTGAGTAATAAGGCGTTT 58.110 39.130 0.00 0.00 0.00 3.60
1362 2439 4.927425 TGTCAGTGAGTAATAAGGCGTTTC 59.073 41.667 0.00 0.00 0.00 2.78
1363 2440 5.169295 GTCAGTGAGTAATAAGGCGTTTCT 58.831 41.667 0.00 0.00 0.00 2.52
1364 2441 5.062308 GTCAGTGAGTAATAAGGCGTTTCTG 59.938 44.000 0.00 0.00 0.00 3.02
1365 2442 4.929808 CAGTGAGTAATAAGGCGTTTCTGT 59.070 41.667 0.00 0.00 0.00 3.41
1366 2443 6.071784 TCAGTGAGTAATAAGGCGTTTCTGTA 60.072 38.462 0.00 0.00 0.00 2.74
1369 2446 6.018994 GTGAGTAATAAGGCGTTTCTGTATGG 60.019 42.308 0.00 0.00 0.00 2.74
1370 2447 4.814771 AGTAATAAGGCGTTTCTGTATGGC 59.185 41.667 0.00 0.00 0.00 4.40
1371 2448 1.647346 TAAGGCGTTTCTGTATGGCG 58.353 50.000 0.00 0.00 34.98 5.69
1372 2449 0.036765 AAGGCGTTTCTGTATGGCGA 60.037 50.000 0.00 0.00 34.98 5.54
1373 2450 0.460284 AGGCGTTTCTGTATGGCGAG 60.460 55.000 0.00 0.00 34.98 5.03
1405 2482 3.260475 TGCGGTGAAATGCTAGTGTAT 57.740 42.857 0.00 0.00 0.00 2.29
1406 2483 4.394439 TGCGGTGAAATGCTAGTGTATA 57.606 40.909 0.00 0.00 0.00 1.47
1409 2486 4.569162 GCGGTGAAATGCTAGTGTATACAA 59.431 41.667 7.25 0.00 0.00 2.41
1440 2523 1.890876 AAATGCCGTGCTGTACTTCA 58.109 45.000 0.00 0.00 0.00 3.02
1443 2526 0.319555 TGCCGTGCTGTACTTCAGAC 60.320 55.000 0.00 0.00 46.27 3.51
1452 2535 3.368236 GCTGTACTTCAGACCACGAAATC 59.632 47.826 0.00 0.00 46.27 2.17
1459 2542 5.929992 ACTTCAGACCACGAAATCGATTTTA 59.070 36.000 23.49 0.55 43.02 1.52
1461 2544 6.788684 TCAGACCACGAAATCGATTTTAAA 57.211 33.333 23.49 1.51 43.02 1.52
1463 2546 8.481974 TCAGACCACGAAATCGATTTTAAATA 57.518 30.769 23.49 2.73 43.02 1.40
1464 2547 8.600625 TCAGACCACGAAATCGATTTTAAATAG 58.399 33.333 23.49 13.09 43.02 1.73
1465 2548 7.850982 CAGACCACGAAATCGATTTTAAATAGG 59.149 37.037 23.49 19.44 43.02 2.57
1466 2549 7.767198 AGACCACGAAATCGATTTTAAATAGGA 59.233 33.333 23.49 0.00 43.02 2.94
1467 2550 7.916552 ACCACGAAATCGATTTTAAATAGGAG 58.083 34.615 23.49 9.12 43.02 3.69
1468 2551 7.012044 ACCACGAAATCGATTTTAAATAGGAGG 59.988 37.037 23.49 16.04 43.02 4.30
1493 2576 3.385755 GGGATTTGTGGAGATTGGATTGG 59.614 47.826 0.00 0.00 0.00 3.16
1499 2582 1.284785 TGGAGATTGGATTGGGGTGAC 59.715 52.381 0.00 0.00 0.00 3.67
1501 2584 2.291540 GGAGATTGGATTGGGGTGACAA 60.292 50.000 0.00 0.00 34.41 3.18
1502 2585 3.019564 GAGATTGGATTGGGGTGACAAG 58.980 50.000 0.00 0.00 33.23 3.16
1510 2595 0.180171 TGGGGTGACAAGAGTGTGTG 59.820 55.000 0.00 0.00 38.41 3.82
1512 2597 1.408266 GGGGTGACAAGAGTGTGTGTT 60.408 52.381 0.00 0.00 38.41 3.32
1516 2601 4.439057 GGTGACAAGAGTGTGTGTTCTAA 58.561 43.478 0.00 0.00 38.41 2.10
1544 2629 3.117738 AGGGAATGACAGGGCTTAGATTG 60.118 47.826 0.00 0.00 0.00 2.67
1549 2634 2.504175 TGACAGGGCTTAGATTGGGTAC 59.496 50.000 0.00 0.00 0.00 3.34
1551 2636 1.485066 CAGGGCTTAGATTGGGTACGT 59.515 52.381 0.00 0.00 0.00 3.57
1556 2641 3.754850 GGCTTAGATTGGGTACGTTTGTT 59.245 43.478 0.00 0.00 0.00 2.83
1557 2642 4.216902 GGCTTAGATTGGGTACGTTTGTTT 59.783 41.667 0.00 0.00 0.00 2.83
1558 2643 5.151389 GCTTAGATTGGGTACGTTTGTTTG 58.849 41.667 0.00 0.00 0.00 2.93
1559 2644 5.278120 GCTTAGATTGGGTACGTTTGTTTGT 60.278 40.000 0.00 0.00 0.00 2.83
1569 2674 1.559831 GTTTGTTTGTGTCCTGCTGC 58.440 50.000 0.00 0.00 0.00 5.25
1596 2701 3.550842 GGCACTGTCCACATTTTCAGTTC 60.551 47.826 0.00 0.00 38.79 3.01
1598 2703 4.790766 GCACTGTCCACATTTTCAGTTCTG 60.791 45.833 0.00 0.00 38.79 3.02
1612 2718 2.954611 TCTGTCTGTCAGACCGCG 59.045 61.111 26.51 16.25 46.77 6.46
1613 2719 2.807045 CTGTCTGTCAGACCGCGC 60.807 66.667 26.51 0.00 44.44 6.86
1615 2721 2.807045 GTCTGTCAGACCGCGCTG 60.807 66.667 20.54 3.54 39.28 5.18
1616 2722 2.983592 TCTGTCAGACCGCGCTGA 60.984 61.111 11.72 11.72 42.31 4.26
1617 2723 2.049156 CTGTCAGACCGCGCTGAA 60.049 61.111 16.45 7.81 45.69 3.02
1619 2725 1.005037 TGTCAGACCGCGCTGAAAT 60.005 52.632 16.45 0.00 45.69 2.17
1621 2727 1.014044 GTCAGACCGCGCTGAAATCA 61.014 55.000 16.45 0.00 45.69 2.57
1622 2728 0.737367 TCAGACCGCGCTGAAATCAG 60.737 55.000 13.12 6.05 41.65 2.90
1623 2729 0.737367 CAGACCGCGCTGAAATCAGA 60.737 55.000 14.43 0.00 46.59 3.27
1624 2730 0.459237 AGACCGCGCTGAAATCAGAG 60.459 55.000 14.43 11.84 46.59 3.35
1625 2731 0.458543 GACCGCGCTGAAATCAGAGA 60.459 55.000 16.83 0.00 46.59 3.10
1626 2732 0.737715 ACCGCGCTGAAATCAGAGAC 60.738 55.000 16.83 8.03 46.59 3.36
1627 2733 0.459237 CCGCGCTGAAATCAGAGACT 60.459 55.000 16.83 0.00 46.59 3.24
1628 2734 1.202302 CCGCGCTGAAATCAGAGACTA 60.202 52.381 16.83 0.00 46.59 2.59
1629 2735 2.544694 CCGCGCTGAAATCAGAGACTAT 60.545 50.000 16.83 0.00 46.59 2.12
1630 2736 2.470628 CGCGCTGAAATCAGAGACTATG 59.529 50.000 16.83 0.00 46.59 2.23
1631 2737 3.711086 GCGCTGAAATCAGAGACTATGA 58.289 45.455 16.83 1.56 46.59 2.15
1632 2738 4.115516 GCGCTGAAATCAGAGACTATGAA 58.884 43.478 16.83 0.00 46.59 2.57
1633 2739 4.208873 GCGCTGAAATCAGAGACTATGAAG 59.791 45.833 16.83 0.00 46.59 3.02
1634 2740 5.347342 CGCTGAAATCAGAGACTATGAAGT 58.653 41.667 14.43 0.00 46.59 3.01
1635 2741 5.231779 CGCTGAAATCAGAGACTATGAAGTG 59.768 44.000 14.43 0.10 46.59 3.16
1636 2742 5.523188 GCTGAAATCAGAGACTATGAAGTGG 59.477 44.000 14.43 0.00 46.59 4.00
1637 2743 6.629068 GCTGAAATCAGAGACTATGAAGTGGA 60.629 42.308 14.43 0.00 46.59 4.02
1638 2744 6.871844 TGAAATCAGAGACTATGAAGTGGAG 58.128 40.000 3.48 0.00 35.56 3.86
1661 2767 9.099454 GGAGTACTTATTTAGAGTCCAATGTTG 57.901 37.037 0.00 0.00 0.00 3.33
1679 2785 0.771127 TGGGTTCCTGCTTTAGCTGT 59.229 50.000 0.00 0.00 42.66 4.40
1680 2786 1.982226 TGGGTTCCTGCTTTAGCTGTA 59.018 47.619 0.00 0.00 42.66 2.74
1681 2787 2.576191 TGGGTTCCTGCTTTAGCTGTAT 59.424 45.455 0.00 0.00 42.66 2.29
1682 2788 3.778075 TGGGTTCCTGCTTTAGCTGTATA 59.222 43.478 0.00 0.00 42.66 1.47
1713 2819 5.482878 ACTTGAAGCTCCATCCATTCATTTT 59.517 36.000 0.00 0.00 32.13 1.82
1718 2824 8.373981 TGAAGCTCCATCCATTCATTTTAAAAA 58.626 29.630 4.44 0.00 0.00 1.94
1722 2828 9.218440 GCTCCATCCATTCATTTTAAAAAGAAA 57.782 29.630 19.16 6.89 30.62 2.52
1728 2834 9.517868 TCCATTCATTTTAAAAAGAAATGGCAT 57.482 25.926 27.46 11.64 42.14 4.40
1740 2846 3.945921 AGAAATGGCATCTGTGATCTGTG 59.054 43.478 0.00 0.00 0.00 3.66
1747 2853 3.259902 CATCTGTGATCTGTGGTCACTG 58.740 50.000 11.52 10.89 44.80 3.66
1754 2860 1.302033 CTGTGGTCACTGGTCAGCC 60.302 63.158 2.66 0.00 0.00 4.85
1755 2861 2.357517 GTGGTCACTGGTCAGCCG 60.358 66.667 0.00 0.00 37.67 5.52
1799 2905 7.659390 AGGTTAGAAGCTGCTATATTCATGTTC 59.341 37.037 1.07 0.00 35.05 3.18
1800 2906 7.442364 GGTTAGAAGCTGCTATATTCATGTTCA 59.558 37.037 1.07 0.00 0.00 3.18
1816 2922 4.044336 TGTTCACTTGGTTGAATGCTTG 57.956 40.909 0.00 0.00 37.80 4.01
1825 3012 3.825585 TGGTTGAATGCTTGCTTCATACA 59.174 39.130 7.78 7.50 32.94 2.29
1844 3031 6.999871 TCATACATGTGAATGGCATGACTATT 59.000 34.615 9.11 0.00 44.60 1.73
1906 3147 7.841282 AAATATCGTCTTAGAGGAAGGATCA 57.159 36.000 8.73 0.00 35.67 2.92
1907 3148 8.429237 AAATATCGTCTTAGAGGAAGGATCAT 57.571 34.615 8.73 0.00 35.67 2.45
1909 3150 6.739331 ATCGTCTTAGAGGAAGGATCATTT 57.261 37.500 8.73 0.00 35.67 2.32
1910 3151 6.546428 TCGTCTTAGAGGAAGGATCATTTT 57.454 37.500 1.83 0.00 35.67 1.82
1912 3153 8.074613 TCGTCTTAGAGGAAGGATCATTTTTA 57.925 34.615 1.83 0.00 35.67 1.52
1913 3154 8.705594 TCGTCTTAGAGGAAGGATCATTTTTAT 58.294 33.333 1.83 0.00 35.67 1.40
1914 3155 8.768955 CGTCTTAGAGGAAGGATCATTTTTATG 58.231 37.037 0.00 0.00 35.67 1.90
1919 3188 7.001073 AGAGGAAGGATCATTTTTATGGCTAC 58.999 38.462 0.00 0.00 0.00 3.58
1924 3193 6.119536 AGGATCATTTTTATGGCTACGTCAA 58.880 36.000 0.00 0.00 0.00 3.18
1926 3195 7.285401 AGGATCATTTTTATGGCTACGTCAATT 59.715 33.333 0.00 0.00 0.00 2.32
1927 3196 7.379529 GGATCATTTTTATGGCTACGTCAATTG 59.620 37.037 0.00 0.00 0.00 2.32
1930 3199 8.085296 TCATTTTTATGGCTACGTCAATTGTTT 58.915 29.630 5.13 0.00 0.00 2.83
1937 3206 3.119849 GCTACGTCAATTGTTTCATGGCT 60.120 43.478 5.13 0.00 0.00 4.75
1938 3207 3.287312 ACGTCAATTGTTTCATGGCTG 57.713 42.857 5.13 0.00 0.00 4.85
1955 3224 3.055458 TGGCTGCATGTAGTACAAGCTTA 60.055 43.478 25.84 10.32 42.66 3.09
1956 3225 3.557595 GGCTGCATGTAGTACAAGCTTAG 59.442 47.826 25.84 18.44 42.66 2.18
1976 3245 0.543749 AAGCATGGTGGCCTCTAGTC 59.456 55.000 3.32 0.00 0.00 2.59
2002 3271 1.002087 CTTTCAGAAGCCGTGGGTACT 59.998 52.381 0.00 0.00 0.00 2.73
2007 3276 2.167693 CAGAAGCCGTGGGTACTGATAA 59.832 50.000 0.00 0.00 0.00 1.75
2008 3277 2.835764 AGAAGCCGTGGGTACTGATAAA 59.164 45.455 0.00 0.00 0.00 1.40
2009 3278 3.454812 AGAAGCCGTGGGTACTGATAAAT 59.545 43.478 0.00 0.00 0.00 1.40
2012 3281 3.707611 AGCCGTGGGTACTGATAAATACA 59.292 43.478 0.00 0.00 0.00 2.29
2014 3283 4.510340 GCCGTGGGTACTGATAAATACAAG 59.490 45.833 0.00 0.00 0.00 3.16
2015 3284 5.682990 GCCGTGGGTACTGATAAATACAAGA 60.683 44.000 0.00 0.00 0.00 3.02
2016 3285 5.751990 CCGTGGGTACTGATAAATACAAGAC 59.248 44.000 0.00 0.00 0.00 3.01
2017 3286 6.406624 CCGTGGGTACTGATAAATACAAGACT 60.407 42.308 0.00 0.00 0.00 3.24
2018 3287 7.201848 CCGTGGGTACTGATAAATACAAGACTA 60.202 40.741 0.00 0.00 0.00 2.59
2021 3451 8.692710 TGGGTACTGATAAATACAAGACTACAG 58.307 37.037 0.00 0.00 0.00 2.74
2052 3482 1.548986 GCAATGGCAGCGAATACAAC 58.451 50.000 0.00 0.00 40.72 3.32
2053 3483 1.798813 GCAATGGCAGCGAATACAACC 60.799 52.381 0.00 0.00 40.72 3.77
2054 3484 1.745087 CAATGGCAGCGAATACAACCT 59.255 47.619 0.00 0.00 0.00 3.50
2055 3485 1.668419 ATGGCAGCGAATACAACCTC 58.332 50.000 0.00 0.00 0.00 3.85
2056 3486 0.392461 TGGCAGCGAATACAACCTCC 60.392 55.000 0.00 0.00 0.00 4.30
2057 3487 1.429148 GGCAGCGAATACAACCTCCG 61.429 60.000 0.00 0.00 0.00 4.63
2058 3488 0.739813 GCAGCGAATACAACCTCCGT 60.740 55.000 0.00 0.00 0.00 4.69
2059 3489 1.278238 CAGCGAATACAACCTCCGTC 58.722 55.000 0.00 0.00 0.00 4.79
2060 3490 0.175073 AGCGAATACAACCTCCGTCC 59.825 55.000 0.00 0.00 0.00 4.79
2061 3491 0.808847 GCGAATACAACCTCCGTCCC 60.809 60.000 0.00 0.00 0.00 4.46
2062 3492 0.533491 CGAATACAACCTCCGTCCCA 59.467 55.000 0.00 0.00 0.00 4.37
2063 3493 1.066716 CGAATACAACCTCCGTCCCAA 60.067 52.381 0.00 0.00 0.00 4.12
2064 3494 2.613474 CGAATACAACCTCCGTCCCAAA 60.613 50.000 0.00 0.00 0.00 3.28
2065 3495 3.617284 GAATACAACCTCCGTCCCAAAT 58.383 45.455 0.00 0.00 0.00 2.32
2066 3496 3.732048 ATACAACCTCCGTCCCAAATT 57.268 42.857 0.00 0.00 0.00 1.82
2067 3497 4.847990 ATACAACCTCCGTCCCAAATTA 57.152 40.909 0.00 0.00 0.00 1.40
2068 3498 2.786777 ACAACCTCCGTCCCAAATTAC 58.213 47.619 0.00 0.00 0.00 1.89
2069 3499 2.374170 ACAACCTCCGTCCCAAATTACT 59.626 45.455 0.00 0.00 0.00 2.24
2070 3500 3.181437 ACAACCTCCGTCCCAAATTACTT 60.181 43.478 0.00 0.00 0.00 2.24
2071 3501 3.067684 ACCTCCGTCCCAAATTACTTG 57.932 47.619 0.00 0.00 34.52 3.16
2072 3502 2.374170 ACCTCCGTCCCAAATTACTTGT 59.626 45.455 0.00 0.00 32.65 3.16
2073 3503 3.007635 CCTCCGTCCCAAATTACTTGTC 58.992 50.000 0.00 0.00 32.65 3.18
2074 3504 3.307480 CCTCCGTCCCAAATTACTTGTCT 60.307 47.826 0.00 0.00 32.65 3.41
2075 3505 4.324267 CTCCGTCCCAAATTACTTGTCTT 58.676 43.478 0.00 0.00 32.65 3.01
2076 3506 5.484715 CTCCGTCCCAAATTACTTGTCTTA 58.515 41.667 0.00 0.00 32.65 2.10
2077 3507 5.484715 TCCGTCCCAAATTACTTGTCTTAG 58.515 41.667 0.00 0.00 32.65 2.18
2078 3508 5.246656 TCCGTCCCAAATTACTTGTCTTAGA 59.753 40.000 0.00 0.00 32.65 2.10
2082 3512 7.962918 CGTCCCAAATTACTTGTCTTAGATTTG 59.037 37.037 0.00 0.00 35.40 2.32
2084 3514 9.010029 TCCCAAATTACTTGTCTTAGATTTGTC 57.990 33.333 0.00 0.00 34.40 3.18
2095 3525 7.704271 TGTCTTAGATTTGTCTAGATACGGTG 58.296 38.462 0.00 0.00 0.00 4.94
2098 3528 8.568794 TCTTAGATTTGTCTAGATACGGTGATG 58.431 37.037 0.00 0.00 0.00 3.07
2108 3538 8.136165 GTCTAGATACGGTGATGTTATCTGTTT 58.864 37.037 0.00 0.00 0.00 2.83
2110 3540 6.281405 AGATACGGTGATGTTATCTGTTTCC 58.719 40.000 0.00 0.00 0.00 3.13
2117 3547 6.183360 GGTGATGTTATCTGTTTCCAGTGATG 60.183 42.308 0.00 0.00 39.82 3.07
2121 3552 5.408299 TGTTATCTGTTTCCAGTGATGTTCG 59.592 40.000 0.00 0.00 39.82 3.95
2124 3555 1.202758 TGTTTCCAGTGATGTTCGGCT 60.203 47.619 0.00 0.00 0.00 5.52
2150 3581 5.334337 GCAAATGCAATTTTCTTCCCAACTC 60.334 40.000 0.00 0.00 46.10 3.01
2163 3594 5.833131 TCTTCCCAACTCTTTGTGCTATTTT 59.167 36.000 0.00 0.00 0.00 1.82
2171 3602 6.064717 ACTCTTTGTGCTATTTTCCTGAACT 58.935 36.000 0.00 0.00 0.00 3.01
2191 3622 8.050778 TGAACTGTGAGTTTAACATGACTTTT 57.949 30.769 0.00 0.00 38.80 2.27
2217 3648 6.839124 TCTTTTGACACCATGCATTATTCT 57.161 33.333 0.00 0.00 0.00 2.40
2218 3649 6.623486 TCTTTTGACACCATGCATTATTCTG 58.377 36.000 0.00 0.00 0.00 3.02
2219 3650 4.987408 TTGACACCATGCATTATTCTGG 57.013 40.909 0.00 0.00 34.84 3.86
2221 3652 4.795469 TGACACCATGCATTATTCTGGAT 58.205 39.130 8.74 0.00 32.92 3.41
2222 3653 5.202765 TGACACCATGCATTATTCTGGATT 58.797 37.500 8.74 0.00 32.92 3.01
2225 3656 7.506599 TGACACCATGCATTATTCTGGATTTAT 59.493 33.333 8.74 0.00 32.92 1.40
2227 3658 6.588756 CACCATGCATTATTCTGGATTTATGC 59.411 38.462 8.74 8.13 36.18 3.14
2228 3659 6.268158 ACCATGCATTATTCTGGATTTATGCA 59.732 34.615 16.11 16.11 43.03 3.96
2229 3660 7.038587 ACCATGCATTATTCTGGATTTATGCAT 60.039 33.333 18.24 18.24 45.82 3.96
2231 3662 7.292713 TGCATTATTCTGGATTTATGCATGT 57.707 32.000 10.16 0.00 38.53 3.21
2232 3663 7.728148 TGCATTATTCTGGATTTATGCATGTT 58.272 30.769 10.16 0.00 38.53 2.71
2233 3664 8.858094 TGCATTATTCTGGATTTATGCATGTTA 58.142 29.630 10.16 0.00 38.53 2.41
2234 3665 9.865321 GCATTATTCTGGATTTATGCATGTTAT 57.135 29.630 10.16 0.00 35.92 1.89
2237 3668 6.653526 TTCTGGATTTATGCATGTTATGGG 57.346 37.500 10.16 0.00 0.00 4.00
2238 3669 5.704354 TCTGGATTTATGCATGTTATGGGT 58.296 37.500 10.16 0.00 0.00 4.51
2239 3670 5.535783 TCTGGATTTATGCATGTTATGGGTG 59.464 40.000 10.16 0.00 0.00 4.61
2240 3671 5.453158 TGGATTTATGCATGTTATGGGTGA 58.547 37.500 10.16 0.00 0.00 4.02
2241 3672 6.076653 TGGATTTATGCATGTTATGGGTGAT 58.923 36.000 10.16 0.00 0.00 3.06
2242 3673 7.237255 TGGATTTATGCATGTTATGGGTGATA 58.763 34.615 10.16 0.00 0.00 2.15
2243 3674 7.394077 TGGATTTATGCATGTTATGGGTGATAG 59.606 37.037 10.16 0.00 0.00 2.08
2244 3675 7.611467 GGATTTATGCATGTTATGGGTGATAGA 59.389 37.037 10.16 0.00 0.00 1.98
2245 3676 7.984422 TTTATGCATGTTATGGGTGATAGAG 57.016 36.000 10.16 0.00 0.00 2.43
2246 3677 4.356405 TGCATGTTATGGGTGATAGAGG 57.644 45.455 0.00 0.00 0.00 3.69
2247 3678 3.973305 TGCATGTTATGGGTGATAGAGGA 59.027 43.478 0.00 0.00 0.00 3.71
2248 3679 4.598807 TGCATGTTATGGGTGATAGAGGAT 59.401 41.667 0.00 0.00 0.00 3.24
2249 3680 5.073554 TGCATGTTATGGGTGATAGAGGATT 59.926 40.000 0.00 0.00 0.00 3.01
2250 3681 6.006449 GCATGTTATGGGTGATAGAGGATTT 58.994 40.000 0.00 0.00 0.00 2.17
2251 3682 6.150140 GCATGTTATGGGTGATAGAGGATTTC 59.850 42.308 0.00 0.00 0.00 2.17
2252 3683 7.456725 CATGTTATGGGTGATAGAGGATTTCT 58.543 38.462 0.00 0.00 40.06 2.52
2253 3684 6.830912 TGTTATGGGTGATAGAGGATTTCTG 58.169 40.000 0.00 0.00 36.61 3.02
2254 3685 6.386927 TGTTATGGGTGATAGAGGATTTCTGT 59.613 38.462 0.00 0.00 36.61 3.41
2255 3686 5.559148 ATGGGTGATAGAGGATTTCTGTC 57.441 43.478 0.00 0.00 42.58 3.51
2261 3692 6.611613 TGATAGAGGATTTCTGTCACTTGT 57.388 37.500 0.29 0.00 45.64 3.16
2262 3693 7.718334 TGATAGAGGATTTCTGTCACTTGTA 57.282 36.000 0.29 0.00 45.64 2.41
2263 3694 7.548097 TGATAGAGGATTTCTGTCACTTGTAC 58.452 38.462 0.29 0.00 45.64 2.90
2264 3695 5.808366 AGAGGATTTCTGTCACTTGTACA 57.192 39.130 0.00 0.00 33.93 2.90
2265 3696 6.365970 AGAGGATTTCTGTCACTTGTACAT 57.634 37.500 0.00 0.00 33.93 2.29
2266 3697 6.773638 AGAGGATTTCTGTCACTTGTACATT 58.226 36.000 0.00 0.00 33.93 2.71
2267 3698 7.227156 AGAGGATTTCTGTCACTTGTACATTT 58.773 34.615 0.00 0.00 33.93 2.32
2268 3699 7.721399 AGAGGATTTCTGTCACTTGTACATTTT 59.279 33.333 0.00 0.00 33.93 1.82
2269 3700 8.237811 AGGATTTCTGTCACTTGTACATTTTT 57.762 30.769 0.00 0.00 0.00 1.94
2270 3701 9.349713 AGGATTTCTGTCACTTGTACATTTTTA 57.650 29.630 0.00 0.00 0.00 1.52
2298 3729 3.617540 TGTTGGTGTATGAAAAGTGCG 57.382 42.857 0.00 0.00 0.00 5.34
2305 3736 4.143347 GGTGTATGAAAAGTGCGCATTTTG 60.143 41.667 28.34 0.00 30.22 2.44
2310 3741 4.677584 TGAAAAGTGCGCATTTTGTAAGT 58.322 34.783 28.34 14.46 30.22 2.24
2312 3743 3.980646 AAGTGCGCATTTTGTAAGTCA 57.019 38.095 15.91 0.00 0.00 3.41
2314 3745 2.878406 AGTGCGCATTTTGTAAGTCACT 59.122 40.909 15.91 0.00 0.00 3.41
2315 3746 2.973224 GTGCGCATTTTGTAAGTCACTG 59.027 45.455 15.91 0.00 0.00 3.66
2316 3747 2.875317 TGCGCATTTTGTAAGTCACTGA 59.125 40.909 5.66 0.00 0.00 3.41
2342 3773 8.868916 ACAAAATGTGTCTTTATGTTTTGTGTC 58.131 29.630 11.73 0.00 43.79 3.67
2349 3780 9.997482 GTGTCTTTATGTTTTGTGTCTTCTTAA 57.003 29.630 0.00 0.00 0.00 1.85
2376 3807 6.913170 ACATGTATGTTGAACATTTCAGGTC 58.087 36.000 16.75 0.57 39.88 3.85
2463 3894 6.303054 TGTCAAGTTTGAGAAATATGGACCA 58.697 36.000 0.00 0.00 37.98 4.02
2481 3912 2.158608 ACCAGACAGGAAAAAGGTCAGG 60.159 50.000 0.00 0.00 42.10 3.86
2491 3922 4.445879 GGAAAAAGGTCAGGGTCACTAGTT 60.446 45.833 0.00 0.00 0.00 2.24
2492 3923 4.790718 AAAAGGTCAGGGTCACTAGTTT 57.209 40.909 0.00 0.00 0.00 2.66
2504 3935 6.958192 AGGGTCACTAGTTTTACTGGATCTAA 59.042 38.462 0.00 0.00 30.59 2.10
2515 3947 7.938140 TTTACTGGATCTAATTGGTTTCTGG 57.062 36.000 0.00 0.00 0.00 3.86
2518 3950 3.052944 TGGATCTAATTGGTTTCTGGGGG 60.053 47.826 0.00 0.00 0.00 5.40
2544 3976 9.814899 GATACCAGATATCTGAATATCCAGTTG 57.185 37.037 30.40 13.41 46.59 3.16
2752 4185 7.980099 ACTGCTGATAGGTTTACTGTAATGTAC 59.020 37.037 0.37 0.00 0.00 2.90
2792 4225 5.039480 ACATGCTTGACAAATCTTTCTCG 57.961 39.130 6.60 0.00 0.00 4.04
2848 4281 2.298163 CCAGCACTCCAGCTTCATTTTT 59.702 45.455 0.00 0.00 43.70 1.94
2872 4305 6.992063 AATTTTAGCTGTGTCCTGTCTATG 57.008 37.500 0.00 0.00 0.00 2.23
2874 4307 5.483685 TTTAGCTGTGTCCTGTCTATGTT 57.516 39.130 0.00 0.00 0.00 2.71
2875 4308 3.325293 AGCTGTGTCCTGTCTATGTTG 57.675 47.619 0.00 0.00 0.00 3.33
2902 4335 4.741321 TTTCGGGATATTACACTTCCGT 57.259 40.909 0.00 0.00 38.70 4.69
2905 4338 3.067180 TCGGGATATTACACTTCCGTGAC 59.933 47.826 0.00 0.00 43.97 3.67
2958 4391 3.738830 ATATTGTGATGGTGCCAATGC 57.261 42.857 0.00 0.00 38.26 3.56
2981 4414 1.202290 CGCAACAATCATTACTGGGGC 60.202 52.381 0.00 0.00 0.00 5.80
2989 4422 2.912771 TCATTACTGGGGCGTGTTATG 58.087 47.619 0.00 0.00 0.00 1.90
3028 4461 0.902516 AGCGACTTTCCAGAGGCTCT 60.903 55.000 12.24 12.24 29.73 4.09
3063 4496 4.827284 AGTTTCTTTTGGTGTGTAGGGATG 59.173 41.667 0.00 0.00 0.00 3.51
3077 4510 5.352293 GTGTAGGGATGTAAACGGTTTTAGG 59.648 44.000 11.87 0.00 0.00 2.69
3104 4537 0.038892 GTGCATGCAAGACAACCAGG 60.039 55.000 24.58 0.00 0.00 4.45
3125 4558 5.471456 CAGGTTCCCTGCATTTATCTGTATC 59.529 44.000 0.00 0.00 45.13 2.24
3126 4559 5.370880 AGGTTCCCTGCATTTATCTGTATCT 59.629 40.000 0.00 0.00 29.57 1.98
3127 4560 6.558775 AGGTTCCCTGCATTTATCTGTATCTA 59.441 38.462 0.00 0.00 29.57 1.98
3128 4561 7.238514 AGGTTCCCTGCATTTATCTGTATCTAT 59.761 37.037 0.00 0.00 29.57 1.98
3129 4562 7.885399 GGTTCCCTGCATTTATCTGTATCTATT 59.115 37.037 0.00 0.00 0.00 1.73
3130 4563 9.944376 GTTCCCTGCATTTATCTGTATCTATTA 57.056 33.333 0.00 0.00 0.00 0.98
3144 4577 9.952030 TCTGTATCTATTATCACTACTCTGGAG 57.048 37.037 0.00 0.00 0.00 3.86
3145 4578 9.952030 CTGTATCTATTATCACTACTCTGGAGA 57.048 37.037 4.49 0.00 0.00 3.71
3146 4579 9.727859 TGTATCTATTATCACTACTCTGGAGAC 57.272 37.037 4.49 0.00 0.00 3.36
3161 4594 6.150140 ACTCTGGAGACAACATAAATTTCTGC 59.850 38.462 4.49 0.00 42.06 4.26
3223 4657 5.749596 TGGTACATTAGATTTGGCGAATG 57.250 39.130 4.28 0.00 37.06 2.67
3262 4698 8.511604 AAATGTAGCACATACTAATTCTGCTT 57.488 30.769 0.00 0.00 37.97 3.91
3263 4699 6.908870 TGTAGCACATACTAATTCTGCTTG 57.091 37.500 0.00 0.00 39.01 4.01
3264 4700 6.639563 TGTAGCACATACTAATTCTGCTTGA 58.360 36.000 0.00 0.00 39.01 3.02
3265 4701 6.535150 TGTAGCACATACTAATTCTGCTTGAC 59.465 38.462 0.00 0.00 39.01 3.18
3266 4702 4.878397 AGCACATACTAATTCTGCTTGACC 59.122 41.667 0.00 0.00 34.49 4.02
3267 4703 4.635765 GCACATACTAATTCTGCTTGACCA 59.364 41.667 0.00 0.00 0.00 4.02
3268 4704 5.447818 GCACATACTAATTCTGCTTGACCAC 60.448 44.000 0.00 0.00 0.00 4.16
3269 4705 5.065218 CACATACTAATTCTGCTTGACCACC 59.935 44.000 0.00 0.00 0.00 4.61
3270 4706 5.045578 ACATACTAATTCTGCTTGACCACCT 60.046 40.000 0.00 0.00 0.00 4.00
3271 4707 3.679389 ACTAATTCTGCTTGACCACCTG 58.321 45.455 0.00 0.00 0.00 4.00
3272 4708 1.915141 AATTCTGCTTGACCACCTGG 58.085 50.000 0.00 0.00 42.17 4.45
3273 4709 1.067295 ATTCTGCTTGACCACCTGGA 58.933 50.000 0.00 0.00 38.94 3.86
3274 4710 0.397941 TTCTGCTTGACCACCTGGAG 59.602 55.000 0.00 0.00 38.94 3.86
3275 4711 0.471780 TCTGCTTGACCACCTGGAGA 60.472 55.000 0.00 0.00 38.94 3.71
3276 4712 0.036577 CTGCTTGACCACCTGGAGAG 60.037 60.000 0.00 0.00 38.94 3.20
3277 4713 1.298014 GCTTGACCACCTGGAGAGG 59.702 63.158 0.00 1.56 46.21 3.69
3278 4714 1.986413 CTTGACCACCTGGAGAGGG 59.014 63.158 0.00 0.00 44.84 4.30
3279 4715 1.538876 TTGACCACCTGGAGAGGGG 60.539 63.158 0.00 0.00 44.84 4.79
3311 4747 5.402867 GCAAATACGCCTCAGTATTAGAGAC 59.597 44.000 3.24 0.00 43.99 3.36
3332 4768 7.067129 AGAGACAAAACAAGGAAGTTTAGGTTC 59.933 37.037 0.00 0.00 40.60 3.62
3418 4855 5.427378 AGCATTTGTATAATGTTTTGGCCC 58.573 37.500 0.00 0.00 0.00 5.80
3472 4909 5.744345 CGCCATACGCCTAATTATTAGAGAG 59.256 44.000 13.07 7.77 32.67 3.20
3533 4970 5.894298 TGGATTAGGTGCTGATTATCTGT 57.106 39.130 1.32 0.00 0.00 3.41
3541 4978 4.458989 GGTGCTGATTATCTGTCCAACAAA 59.541 41.667 1.32 0.00 0.00 2.83
3542 4979 5.392380 GGTGCTGATTATCTGTCCAACAAAG 60.392 44.000 1.32 0.00 0.00 2.77
3545 4982 6.489700 TGCTGATTATCTGTCCAACAAAGAAA 59.510 34.615 1.32 0.00 0.00 2.52
3546 4983 7.177216 TGCTGATTATCTGTCCAACAAAGAAAT 59.823 33.333 1.32 0.00 0.00 2.17
3547 4984 8.677300 GCTGATTATCTGTCCAACAAAGAAATA 58.323 33.333 1.32 0.00 0.00 1.40
3570 5007 4.092116 AGAAGGGGCATTTCTATAGTGC 57.908 45.455 5.47 5.47 33.30 4.40
3611 5049 4.038042 TCTCATGGTTTAGTCTATCAGCCG 59.962 45.833 0.00 0.00 0.00 5.52
3612 5050 3.704566 TCATGGTTTAGTCTATCAGCCGT 59.295 43.478 0.00 0.00 0.00 5.68
3613 5051 3.795623 TGGTTTAGTCTATCAGCCGTC 57.204 47.619 0.00 0.00 0.00 4.79
3614 5052 3.362706 TGGTTTAGTCTATCAGCCGTCT 58.637 45.455 0.00 0.00 0.00 4.18
3615 5053 3.380637 TGGTTTAGTCTATCAGCCGTCTC 59.619 47.826 0.00 0.00 0.00 3.36
3616 5054 3.380637 GGTTTAGTCTATCAGCCGTCTCA 59.619 47.826 0.00 0.00 0.00 3.27
3617 5055 4.352887 GTTTAGTCTATCAGCCGTCTCAC 58.647 47.826 0.00 0.00 0.00 3.51
3618 5056 2.428544 AGTCTATCAGCCGTCTCACT 57.571 50.000 0.00 0.00 0.00 3.41
3619 5057 2.729194 AGTCTATCAGCCGTCTCACTT 58.271 47.619 0.00 0.00 0.00 3.16
3620 5058 3.093057 AGTCTATCAGCCGTCTCACTTT 58.907 45.455 0.00 0.00 0.00 2.66
3625 5063 0.236711 CAGCCGTCTCACTTTTGCTG 59.763 55.000 0.00 0.00 40.05 4.41
3627 5065 0.514691 GCCGTCTCACTTTTGCTGAG 59.485 55.000 0.00 0.00 37.14 3.35
3642 5080 0.034767 CTGAGGCAAAGCATGGAGGA 60.035 55.000 0.00 0.00 0.00 3.71
3650 5088 2.693591 CAAAGCATGGAGGAGCATGATT 59.306 45.455 0.00 0.00 38.81 2.57
3652 5090 0.959553 GCATGGAGGAGCATGATTGG 59.040 55.000 0.00 0.00 0.00 3.16
3690 5128 9.271828 CTTTTTGTCAAATAAAATTGGCCTACT 57.728 29.630 3.32 0.00 34.00 2.57
3719 5157 0.252239 ATGGGACCCTTTTCTTGCCC 60.252 55.000 13.00 0.00 36.11 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 1.690219 GAGACCGACATGCTCCCCAT 61.690 60.000 0.00 0.00 33.39 4.00
172 173 2.561569 CGCCCAATCCGACTTAAATCT 58.438 47.619 0.00 0.00 0.00 2.40
254 264 4.218578 CGGAGCCAGCTCAGCGAT 62.219 66.667 20.56 0.00 44.40 4.58
301 311 0.390472 CCGACTCAAGGCAAGTCTCC 60.390 60.000 11.32 0.00 40.82 3.71
334 344 2.116772 ACCGACGTCTCCCAGGAA 59.883 61.111 14.70 0.00 0.00 3.36
412 435 1.817209 GAGCCTCCCGAATTCGAGT 59.183 57.895 28.76 4.52 43.02 4.18
560 618 2.981909 TCGACCCGAGTTCGCAGT 60.982 61.111 0.00 0.00 38.18 4.40
929 997 1.449246 CTCTGCGCAGGGGAAAGAG 60.449 63.158 35.36 20.43 0.00 2.85
1310 2380 1.052617 GGGAGGGAGAATAGACAGGC 58.947 60.000 0.00 0.00 0.00 4.85
1313 2383 0.261991 AGCGGGAGGGAGAATAGACA 59.738 55.000 0.00 0.00 0.00 3.41
1317 2387 0.691078 AGCAAGCGGGAGGGAGAATA 60.691 55.000 0.00 0.00 0.00 1.75
1352 2429 1.205179 TCGCCATACAGAAACGCCTTA 59.795 47.619 0.00 0.00 0.00 2.69
1353 2430 0.036765 TCGCCATACAGAAACGCCTT 60.037 50.000 0.00 0.00 0.00 4.35
1354 2431 0.460284 CTCGCCATACAGAAACGCCT 60.460 55.000 0.00 0.00 0.00 5.52
1356 2433 1.348594 GCTCGCCATACAGAAACGC 59.651 57.895 0.00 0.00 0.00 4.84
1357 2434 1.075542 TTGCTCGCCATACAGAAACG 58.924 50.000 0.00 0.00 0.00 3.60
1358 2435 2.223340 CCATTGCTCGCCATACAGAAAC 60.223 50.000 0.00 0.00 0.00 2.78
1359 2436 2.016318 CCATTGCTCGCCATACAGAAA 58.984 47.619 0.00 0.00 0.00 2.52
1361 2438 0.541392 ACCATTGCTCGCCATACAGA 59.459 50.000 0.00 0.00 0.00 3.41
1362 2439 0.659427 CACCATTGCTCGCCATACAG 59.341 55.000 0.00 0.00 0.00 2.74
1363 2440 0.251634 TCACCATTGCTCGCCATACA 59.748 50.000 0.00 0.00 0.00 2.29
1364 2441 1.378531 TTCACCATTGCTCGCCATAC 58.621 50.000 0.00 0.00 0.00 2.39
1365 2442 2.346766 ATTCACCATTGCTCGCCATA 57.653 45.000 0.00 0.00 0.00 2.74
1366 2443 1.135527 CAATTCACCATTGCTCGCCAT 59.864 47.619 0.00 0.00 36.05 4.40
1405 2482 7.167801 GCACGGCATTTAGTTTTTAGTTTTGTA 59.832 33.333 0.00 0.00 0.00 2.41
1406 2483 6.019398 GCACGGCATTTAGTTTTTAGTTTTGT 60.019 34.615 0.00 0.00 0.00 2.83
1409 2486 5.689961 CAGCACGGCATTTAGTTTTTAGTTT 59.310 36.000 0.00 0.00 0.00 2.66
1425 2502 1.014564 GGTCTGAAGTACAGCACGGC 61.015 60.000 0.00 0.00 45.38 5.68
1427 2504 1.419374 GTGGTCTGAAGTACAGCACG 58.581 55.000 0.00 0.00 45.38 5.34
1440 2523 7.767198 TCCTATTTAAAATCGATTTCGTGGTCT 59.233 33.333 22.93 8.80 40.80 3.85
1443 2526 7.225931 TCCTCCTATTTAAAATCGATTTCGTGG 59.774 37.037 22.93 17.39 40.80 4.94
1452 2535 5.562298 TCCCCTCCTCCTATTTAAAATCG 57.438 43.478 0.00 0.00 0.00 3.34
1459 2542 3.205282 CCACAAATCCCCTCCTCCTATTT 59.795 47.826 0.00 0.00 0.00 1.40
1461 2544 2.021042 TCCACAAATCCCCTCCTCCTAT 60.021 50.000 0.00 0.00 0.00 2.57
1463 2546 0.121197 TCCACAAATCCCCTCCTCCT 59.879 55.000 0.00 0.00 0.00 3.69
1464 2547 0.548510 CTCCACAAATCCCCTCCTCC 59.451 60.000 0.00 0.00 0.00 4.30
1465 2548 1.584724 TCTCCACAAATCCCCTCCTC 58.415 55.000 0.00 0.00 0.00 3.71
1466 2549 2.243221 CAATCTCCACAAATCCCCTCCT 59.757 50.000 0.00 0.00 0.00 3.69
1467 2550 2.659428 CAATCTCCACAAATCCCCTCC 58.341 52.381 0.00 0.00 0.00 4.30
1468 2551 2.242196 TCCAATCTCCACAAATCCCCTC 59.758 50.000 0.00 0.00 0.00 4.30
1493 2576 1.940613 GAACACACACTCTTGTCACCC 59.059 52.381 0.00 0.00 31.66 4.61
1499 2582 5.116180 TGACCTTTAGAACACACACTCTTG 58.884 41.667 0.00 0.00 0.00 3.02
1501 2584 4.202264 CCTGACCTTTAGAACACACACTCT 60.202 45.833 0.00 0.00 0.00 3.24
1502 2585 4.058817 CCTGACCTTTAGAACACACACTC 58.941 47.826 0.00 0.00 0.00 3.51
1544 2629 2.032426 CAGGACACAAACAAACGTACCC 59.968 50.000 0.00 0.00 0.00 3.69
1549 2634 1.826327 CAGCAGGACACAAACAAACG 58.174 50.000 0.00 0.00 0.00 3.60
1551 2636 0.459489 GGCAGCAGGACACAAACAAA 59.541 50.000 0.00 0.00 0.00 2.83
1556 2641 1.071987 CAGAGGCAGCAGGACACAA 59.928 57.895 0.00 0.00 0.00 3.33
1557 2642 2.745698 CAGAGGCAGCAGGACACA 59.254 61.111 0.00 0.00 0.00 3.72
1558 2643 2.046507 CCAGAGGCAGCAGGACAC 60.047 66.667 0.00 0.00 0.00 3.67
1569 2674 0.037303 AATGTGGACAGTGCCAGAGG 59.963 55.000 6.54 0.00 38.95 3.69
1578 2683 4.818546 AGACAGAACTGAAAATGTGGACAG 59.181 41.667 8.87 0.00 36.58 3.51
1596 2701 2.807045 GCGCGGTCTGACAGACAG 60.807 66.667 31.35 28.56 46.79 3.51
1598 2703 2.749110 TTCAGCGCGGTCTGACAGAC 62.749 60.000 24.76 24.76 44.32 3.51
1609 2715 2.194800 TAGTCTCTGATTTCAGCGCG 57.805 50.000 0.00 0.00 43.46 6.86
1610 2716 3.711086 TCATAGTCTCTGATTTCAGCGC 58.289 45.455 0.00 0.00 43.46 5.92
1611 2717 5.231779 CACTTCATAGTCTCTGATTTCAGCG 59.768 44.000 2.60 0.00 36.85 5.18
1612 2718 5.523188 CCACTTCATAGTCTCTGATTTCAGC 59.477 44.000 2.60 0.00 36.85 4.26
1613 2719 6.871844 TCCACTTCATAGTCTCTGATTTCAG 58.128 40.000 0.97 0.97 37.67 3.02
1615 2721 6.872920 ACTCCACTTCATAGTCTCTGATTTC 58.127 40.000 0.00 0.00 30.26 2.17
1616 2722 6.865834 ACTCCACTTCATAGTCTCTGATTT 57.134 37.500 0.00 0.00 30.26 2.17
1617 2723 7.122715 AGTACTCCACTTCATAGTCTCTGATT 58.877 38.462 0.00 0.00 31.59 2.57
1619 2725 6.068461 AGTACTCCACTTCATAGTCTCTGA 57.932 41.667 0.00 0.00 31.59 3.27
1621 2727 9.482175 AAATAAGTACTCCACTTCATAGTCTCT 57.518 33.333 0.00 0.00 44.48 3.10
1628 2734 8.697292 GGACTCTAAATAAGTACTCCACTTCAT 58.303 37.037 0.00 0.00 44.48 2.57
1629 2735 7.672660 TGGACTCTAAATAAGTACTCCACTTCA 59.327 37.037 0.00 0.00 44.48 3.02
1630 2736 8.064336 TGGACTCTAAATAAGTACTCCACTTC 57.936 38.462 0.00 0.00 44.48 3.01
1632 2738 8.478877 CATTGGACTCTAAATAAGTACTCCACT 58.521 37.037 0.00 0.00 40.05 4.00
1633 2739 8.258708 ACATTGGACTCTAAATAAGTACTCCAC 58.741 37.037 0.00 0.00 0.00 4.02
1634 2740 8.375493 ACATTGGACTCTAAATAAGTACTCCA 57.625 34.615 0.00 0.00 0.00 3.86
1635 2741 9.099454 CAACATTGGACTCTAAATAAGTACTCC 57.901 37.037 0.00 0.00 0.00 3.85
1653 2759 6.647016 GCTAAAGCAGGAACCCAACATTGG 62.647 50.000 3.47 3.47 43.64 3.16
1654 2760 3.614870 GCTAAAGCAGGAACCCAACATTG 60.615 47.826 0.00 0.00 41.59 2.82
1661 2767 2.781681 TACAGCTAAAGCAGGAACCC 57.218 50.000 4.54 0.00 45.16 4.11
1665 2771 9.976776 AGTAGTATATATACAGCTAAAGCAGGA 57.023 33.333 22.00 0.00 45.16 3.86
1679 2785 9.990868 TGGATGGAGCTTCAAGTAGTATATATA 57.009 33.333 0.00 0.00 0.00 0.86
1680 2786 8.901472 TGGATGGAGCTTCAAGTAGTATATAT 57.099 34.615 0.00 0.00 0.00 0.86
1681 2787 8.901472 ATGGATGGAGCTTCAAGTAGTATATA 57.099 34.615 0.00 0.00 0.00 0.86
1682 2788 7.805083 ATGGATGGAGCTTCAAGTAGTATAT 57.195 36.000 0.00 0.00 0.00 0.86
1692 2798 7.479352 TTTAAAATGAATGGATGGAGCTTCA 57.521 32.000 0.00 0.00 32.63 3.02
1693 2799 8.776376 TTTTTAAAATGAATGGATGGAGCTTC 57.224 30.769 0.55 0.00 0.00 3.86
1713 2819 7.177216 ACAGATCACAGATGCCATTTCTTTTTA 59.823 33.333 0.00 0.00 0.00 1.52
1718 2824 3.945921 CACAGATCACAGATGCCATTTCT 59.054 43.478 0.00 0.00 0.00 2.52
1722 2828 1.562942 ACCACAGATCACAGATGCCAT 59.437 47.619 0.00 0.00 0.00 4.40
1724 2830 1.065926 TGACCACAGATCACAGATGCC 60.066 52.381 0.00 0.00 0.00 4.40
1740 2846 1.153549 GATCGGCTGACCAGTGACC 60.154 63.158 0.00 0.00 34.57 4.02
1747 2853 0.810648 TGCAAAATGATCGGCTGACC 59.189 50.000 0.00 0.00 0.00 4.02
1775 2881 8.279103 GTGAACATGAATATAGCAGCTTCTAAC 58.721 37.037 0.00 0.00 0.00 2.34
1799 2905 2.806608 AGCAAGCATTCAACCAAGTG 57.193 45.000 0.00 0.00 0.00 3.16
1800 2906 2.694628 TGAAGCAAGCATTCAACCAAGT 59.305 40.909 0.00 0.00 33.85 3.16
1816 2922 4.037089 TCATGCCATTCACATGTATGAAGC 59.963 41.667 9.72 6.72 44.26 3.86
1825 3012 6.776116 AGAATGAATAGTCATGCCATTCACAT 59.224 34.615 6.41 9.44 44.02 3.21
1866 3107 9.778741 AGACGATATTTATAACATGGTCATTGT 57.221 29.630 16.88 4.08 31.93 2.71
1880 3121 9.535170 TGATCCTTCCTCTAAGACGATATTTAT 57.465 33.333 0.00 0.00 37.38 1.40
1885 3126 7.841282 AAATGATCCTTCCTCTAAGACGATA 57.159 36.000 0.00 0.00 37.38 2.92
1887 3128 6.546428 AAAATGATCCTTCCTCTAAGACGA 57.454 37.500 0.00 0.00 37.38 4.20
1888 3129 8.768955 CATAAAAATGATCCTTCCTCTAAGACG 58.231 37.037 0.00 0.00 37.38 4.18
1889 3130 9.061435 CCATAAAAATGATCCTTCCTCTAAGAC 57.939 37.037 0.00 0.00 37.38 3.01
1891 3132 7.723172 AGCCATAAAAATGATCCTTCCTCTAAG 59.277 37.037 0.00 0.00 34.73 2.18
1893 3134 7.154191 AGCCATAAAAATGATCCTTCCTCTA 57.846 36.000 0.00 0.00 0.00 2.43
1895 3136 6.073003 CGTAGCCATAAAAATGATCCTTCCTC 60.073 42.308 0.00 0.00 0.00 3.71
1896 3137 5.765182 CGTAGCCATAAAAATGATCCTTCCT 59.235 40.000 0.00 0.00 0.00 3.36
1898 3139 6.260050 TGACGTAGCCATAAAAATGATCCTTC 59.740 38.462 0.00 0.00 0.00 3.46
1899 3140 6.119536 TGACGTAGCCATAAAAATGATCCTT 58.880 36.000 0.00 0.00 0.00 3.36
1901 3142 6.371809 TTGACGTAGCCATAAAAATGATCC 57.628 37.500 0.00 0.00 0.00 3.36
1902 3143 7.915397 ACAATTGACGTAGCCATAAAAATGATC 59.085 33.333 13.59 0.00 0.00 2.92
1903 3144 7.771183 ACAATTGACGTAGCCATAAAAATGAT 58.229 30.769 13.59 0.00 0.00 2.45
1904 3145 7.151999 ACAATTGACGTAGCCATAAAAATGA 57.848 32.000 13.59 0.00 0.00 2.57
1906 3147 8.085296 TGAAACAATTGACGTAGCCATAAAAAT 58.915 29.630 13.59 0.00 0.00 1.82
1907 3148 7.426410 TGAAACAATTGACGTAGCCATAAAAA 58.574 30.769 13.59 0.00 0.00 1.94
1909 3150 6.561737 TGAAACAATTGACGTAGCCATAAA 57.438 33.333 13.59 0.00 0.00 1.40
1910 3151 6.404184 CCATGAAACAATTGACGTAGCCATAA 60.404 38.462 13.59 0.00 0.00 1.90
1912 3153 4.142403 CCATGAAACAATTGACGTAGCCAT 60.142 41.667 13.59 2.96 0.00 4.40
1913 3154 3.190327 CCATGAAACAATTGACGTAGCCA 59.810 43.478 13.59 0.69 0.00 4.75
1914 3155 3.758300 CCATGAAACAATTGACGTAGCC 58.242 45.455 13.59 0.00 0.00 3.93
1919 3188 1.987770 GCAGCCATGAAACAATTGACG 59.012 47.619 13.59 0.00 0.00 4.35
1955 3224 3.832175 AGAGGCCACCATGCTTCT 58.168 55.556 5.01 0.00 42.22 2.85
1956 3225 0.543749 ACTAGAGGCCACCATGCTTC 59.456 55.000 5.01 0.00 37.60 3.86
1960 3229 0.179100 CGTGACTAGAGGCCACCATG 60.179 60.000 5.01 0.00 0.00 3.66
2014 3283 6.037610 CCATTGCAGAATTTAGACCTGTAGTC 59.962 42.308 0.00 0.00 46.71 2.59
2015 3284 5.882557 CCATTGCAGAATTTAGACCTGTAGT 59.117 40.000 0.00 0.00 0.00 2.73
2016 3285 5.220931 GCCATTGCAGAATTTAGACCTGTAG 60.221 44.000 0.00 0.00 37.47 2.74
2017 3286 4.640201 GCCATTGCAGAATTTAGACCTGTA 59.360 41.667 0.00 0.00 37.47 2.74
2018 3287 3.445096 GCCATTGCAGAATTTAGACCTGT 59.555 43.478 0.00 0.00 37.47 4.00
2037 3467 0.392461 GGAGGTTGTATTCGCTGCCA 60.392 55.000 0.00 0.00 0.00 4.92
2043 3473 0.533491 TGGGACGGAGGTTGTATTCG 59.467 55.000 0.00 0.00 0.00 3.34
2044 3474 2.773993 TTGGGACGGAGGTTGTATTC 57.226 50.000 0.00 0.00 0.00 1.75
2047 3477 3.583966 AGTAATTTGGGACGGAGGTTGTA 59.416 43.478 0.00 0.00 0.00 2.41
2049 3479 3.067684 AGTAATTTGGGACGGAGGTTG 57.932 47.619 0.00 0.00 0.00 3.77
2050 3480 3.181437 ACAAGTAATTTGGGACGGAGGTT 60.181 43.478 0.00 0.00 41.25 3.50
2051 3481 2.374170 ACAAGTAATTTGGGACGGAGGT 59.626 45.455 0.00 0.00 41.25 3.85
2052 3482 3.007635 GACAAGTAATTTGGGACGGAGG 58.992 50.000 0.00 0.00 41.25 4.30
2053 3483 3.939066 AGACAAGTAATTTGGGACGGAG 58.061 45.455 0.00 0.00 41.25 4.63
2054 3484 4.360951 AAGACAAGTAATTTGGGACGGA 57.639 40.909 0.00 0.00 41.25 4.69
2055 3485 5.484715 TCTAAGACAAGTAATTTGGGACGG 58.515 41.667 0.00 0.00 41.25 4.79
2056 3486 7.611213 AATCTAAGACAAGTAATTTGGGACG 57.389 36.000 0.00 0.00 41.25 4.79
2057 3487 8.793592 ACAAATCTAAGACAAGTAATTTGGGAC 58.206 33.333 9.60 0.00 41.25 4.46
2058 3488 8.934023 ACAAATCTAAGACAAGTAATTTGGGA 57.066 30.769 9.60 0.00 41.25 4.37
2059 3489 9.014297 AGACAAATCTAAGACAAGTAATTTGGG 57.986 33.333 9.60 0.00 38.04 4.12
2067 3497 8.407064 CCGTATCTAGACAAATCTAAGACAAGT 58.593 37.037 0.00 0.00 36.98 3.16
2068 3498 8.407064 ACCGTATCTAGACAAATCTAAGACAAG 58.593 37.037 0.00 0.00 36.98 3.16
2069 3499 8.188799 CACCGTATCTAGACAAATCTAAGACAA 58.811 37.037 0.00 0.00 36.98 3.18
2070 3500 7.555195 TCACCGTATCTAGACAAATCTAAGACA 59.445 37.037 0.00 0.00 36.98 3.41
2071 3501 7.928103 TCACCGTATCTAGACAAATCTAAGAC 58.072 38.462 0.00 0.00 36.98 3.01
2072 3502 8.568794 CATCACCGTATCTAGACAAATCTAAGA 58.431 37.037 0.00 0.00 36.98 2.10
2073 3503 8.353684 ACATCACCGTATCTAGACAAATCTAAG 58.646 37.037 0.00 0.00 36.98 2.18
2074 3504 8.234136 ACATCACCGTATCTAGACAAATCTAA 57.766 34.615 0.00 0.00 36.98 2.10
2075 3505 7.818997 ACATCACCGTATCTAGACAAATCTA 57.181 36.000 0.00 0.00 36.29 1.98
2076 3506 6.716934 ACATCACCGTATCTAGACAAATCT 57.283 37.500 0.00 0.00 39.15 2.40
2077 3507 9.130312 GATAACATCACCGTATCTAGACAAATC 57.870 37.037 0.00 0.00 0.00 2.17
2078 3508 8.861086 AGATAACATCACCGTATCTAGACAAAT 58.139 33.333 0.00 0.00 0.00 2.32
2082 3512 7.204496 ACAGATAACATCACCGTATCTAGAC 57.796 40.000 0.00 0.00 0.00 2.59
2084 3514 7.595502 GGAAACAGATAACATCACCGTATCTAG 59.404 40.741 0.00 0.00 0.00 2.43
2086 3516 6.127168 TGGAAACAGATAACATCACCGTATCT 60.127 38.462 0.00 0.00 35.01 1.98
2087 3517 6.046593 TGGAAACAGATAACATCACCGTATC 58.953 40.000 0.00 0.00 35.01 2.24
2089 3519 5.408880 TGGAAACAGATAACATCACCGTA 57.591 39.130 0.00 0.00 35.01 4.02
2108 3538 0.955428 GCAAGCCGAACATCACTGGA 60.955 55.000 0.00 0.00 0.00 3.86
2110 3540 0.592637 TTGCAAGCCGAACATCACTG 59.407 50.000 0.00 0.00 0.00 3.66
2139 3570 4.640771 ATAGCACAAAGAGTTGGGAAGA 57.359 40.909 0.00 0.00 40.98 2.87
2150 3581 5.916883 CACAGTTCAGGAAAATAGCACAAAG 59.083 40.000 0.00 0.00 0.00 2.77
2163 3594 5.758296 GTCATGTTAAACTCACAGTTCAGGA 59.242 40.000 0.00 0.00 37.47 3.86
2171 3602 6.767524 ACCAAAAGTCATGTTAAACTCACA 57.232 33.333 0.00 0.00 0.00 3.58
2211 3642 8.805175 CCCATAACATGCATAAATCCAGAATAA 58.195 33.333 0.00 0.00 0.00 1.40
2217 3648 5.453158 TCACCCATAACATGCATAAATCCA 58.547 37.500 0.00 0.00 0.00 3.41
2218 3649 6.594788 ATCACCCATAACATGCATAAATCC 57.405 37.500 0.00 0.00 0.00 3.01
2219 3650 8.565896 TCTATCACCCATAACATGCATAAATC 57.434 34.615 0.00 0.00 0.00 2.17
2221 3652 6.942005 CCTCTATCACCCATAACATGCATAAA 59.058 38.462 0.00 0.00 0.00 1.40
2222 3653 6.272090 TCCTCTATCACCCATAACATGCATAA 59.728 38.462 0.00 0.00 0.00 1.90
2225 3656 3.973305 TCCTCTATCACCCATAACATGCA 59.027 43.478 0.00 0.00 0.00 3.96
2227 3658 7.389884 CAGAAATCCTCTATCACCCATAACATG 59.610 40.741 0.00 0.00 31.12 3.21
2228 3659 7.072961 ACAGAAATCCTCTATCACCCATAACAT 59.927 37.037 0.00 0.00 31.12 2.71
2229 3660 6.386927 ACAGAAATCCTCTATCACCCATAACA 59.613 38.462 0.00 0.00 31.12 2.41
2231 3662 6.615316 TGACAGAAATCCTCTATCACCCATAA 59.385 38.462 0.00 0.00 32.46 1.90
2232 3663 6.143206 TGACAGAAATCCTCTATCACCCATA 58.857 40.000 0.00 0.00 32.46 2.74
2233 3664 4.971282 TGACAGAAATCCTCTATCACCCAT 59.029 41.667 0.00 0.00 32.46 4.00
2234 3665 4.361783 TGACAGAAATCCTCTATCACCCA 58.638 43.478 0.00 0.00 32.46 4.51
2238 3669 6.611613 ACAAGTGACAGAAATCCTCTATCA 57.388 37.500 0.00 0.00 35.14 2.15
2239 3670 7.548097 TGTACAAGTGACAGAAATCCTCTATC 58.452 38.462 0.00 0.00 31.12 2.08
2240 3671 7.482169 TGTACAAGTGACAGAAATCCTCTAT 57.518 36.000 0.00 0.00 31.12 1.98
2241 3672 6.911250 TGTACAAGTGACAGAAATCCTCTA 57.089 37.500 0.00 0.00 31.12 2.43
2242 3673 5.808366 TGTACAAGTGACAGAAATCCTCT 57.192 39.130 0.00 0.00 33.23 3.69
2243 3674 7.440523 AAATGTACAAGTGACAGAAATCCTC 57.559 36.000 0.00 0.00 0.00 3.71
2244 3675 7.823745 AAAATGTACAAGTGACAGAAATCCT 57.176 32.000 0.00 0.00 0.00 3.24
2271 3702 8.293867 GCACTTTTCATACACCAACATACTTTA 58.706 33.333 0.00 0.00 0.00 1.85
2272 3703 7.145323 GCACTTTTCATACACCAACATACTTT 58.855 34.615 0.00 0.00 0.00 2.66
2273 3704 6.567701 CGCACTTTTCATACACCAACATACTT 60.568 38.462 0.00 0.00 0.00 2.24
2274 3705 5.106712 CGCACTTTTCATACACCAACATACT 60.107 40.000 0.00 0.00 0.00 2.12
2275 3706 5.086058 CGCACTTTTCATACACCAACATAC 58.914 41.667 0.00 0.00 0.00 2.39
2276 3707 4.378978 GCGCACTTTTCATACACCAACATA 60.379 41.667 0.30 0.00 0.00 2.29
2277 3708 3.611530 GCGCACTTTTCATACACCAACAT 60.612 43.478 0.30 0.00 0.00 2.71
2278 3709 2.287308 GCGCACTTTTCATACACCAACA 60.287 45.455 0.30 0.00 0.00 3.33
2279 3710 2.287308 TGCGCACTTTTCATACACCAAC 60.287 45.455 5.66 0.00 0.00 3.77
2288 3719 4.677584 ACTTACAAAATGCGCACTTTTCA 58.322 34.783 15.04 2.15 0.00 2.69
2316 3747 8.770438 ACACAAAACATAAAGACACATTTTGT 57.230 26.923 6.99 6.99 45.99 2.83
2321 3752 8.225603 AGAAGACACAAAACATAAAGACACAT 57.774 30.769 0.00 0.00 0.00 3.21
2322 3753 7.624360 AGAAGACACAAAACATAAAGACACA 57.376 32.000 0.00 0.00 0.00 3.72
2349 3780 9.023962 ACCTGAAATGTTCAACATACATGTAAT 57.976 29.630 10.14 0.00 37.97 1.89
2376 3807 7.039504 CCCATTCCAACATTATTTCCAGGATAG 60.040 40.741 0.00 0.00 0.00 2.08
2463 3894 2.106684 GACCCTGACCTTTTTCCTGTCT 59.893 50.000 0.00 0.00 0.00 3.41
2481 3912 9.099454 CAATTAGATCCAGTAAAACTAGTGACC 57.901 37.037 0.00 0.00 0.00 4.02
2491 3922 6.889722 CCCAGAAACCAATTAGATCCAGTAAA 59.110 38.462 0.00 0.00 0.00 2.01
2492 3923 6.423182 CCCAGAAACCAATTAGATCCAGTAA 58.577 40.000 0.00 0.00 0.00 2.24
2504 3935 2.293246 TGGTATCCCCCAGAAACCAAT 58.707 47.619 0.00 0.00 37.29 3.16
2513 3945 4.502036 TTCAGATATCTGGTATCCCCCA 57.498 45.455 28.30 6.85 43.91 4.96
2515 3947 6.846505 TGGATATTCAGATATCTGGTATCCCC 59.153 42.308 37.25 28.19 46.76 4.81
2518 3950 9.814899 CAACTGGATATTCAGATATCTGGTATC 57.185 37.037 28.66 28.66 42.45 2.24
2530 3962 9.831737 CTGTAAAAGAAACAACTGGATATTCAG 57.168 33.333 9.66 9.66 40.40 3.02
2538 3970 6.206498 GCTTACCTGTAAAAGAAACAACTGG 58.794 40.000 0.00 0.00 37.09 4.00
2540 3972 5.587443 ACGCTTACCTGTAAAAGAAACAACT 59.413 36.000 0.00 0.00 0.00 3.16
2544 3976 5.919272 AGACGCTTACCTGTAAAAGAAAC 57.081 39.130 0.00 0.00 0.00 2.78
2652 4085 0.839853 AAGTTCCCTCTGCTCTGGCT 60.840 55.000 0.00 0.00 39.59 4.75
2752 4185 9.121517 CAAGCATGTATTGTGTAAAAAGAGAAG 57.878 33.333 0.00 0.00 0.00 2.85
2766 4199 7.217636 CGAGAAAGATTTGTCAAGCATGTATTG 59.782 37.037 6.49 6.49 31.41 1.90
2770 4203 4.756642 TCGAGAAAGATTTGTCAAGCATGT 59.243 37.500 0.00 0.00 31.41 3.21
2792 4225 8.186163 TCATCTTGCAGTTGATGATTTACATTC 58.814 33.333 18.69 0.00 42.58 2.67
2827 4260 1.542492 AAATGAAGCTGGAGTGCTGG 58.458 50.000 0.00 0.00 43.24 4.85
2848 4281 7.620880 ACATAGACAGGACACAGCTAAAATTA 58.379 34.615 0.00 0.00 0.00 1.40
2872 4305 6.072893 AGTGTAATATCCCGAAAACACACAAC 60.073 38.462 6.23 0.00 39.66 3.32
2874 4307 5.553123 AGTGTAATATCCCGAAAACACACA 58.447 37.500 6.23 0.00 39.66 3.72
2875 4308 6.402875 GGAAGTGTAATATCCCGAAAACACAC 60.403 42.308 6.23 0.00 39.66 3.82
2905 4338 1.303282 GGGAAGTTGGCCTACCTGG 59.697 63.158 14.06 0.00 36.63 4.45
2958 4391 3.243168 CCCCAGTAATGATTGTTGCGATG 60.243 47.826 0.00 0.00 0.00 3.84
2962 4395 1.202290 CGCCCCAGTAATGATTGTTGC 60.202 52.381 0.00 0.00 0.00 4.17
2963 4396 2.091541 ACGCCCCAGTAATGATTGTTG 58.908 47.619 0.00 0.00 0.00 3.33
2981 4414 1.724623 CGACCTGAACCACATAACACG 59.275 52.381 0.00 0.00 0.00 4.49
2989 4422 3.737355 GCTCCTAATACGACCTGAACCAC 60.737 52.174 0.00 0.00 0.00 4.16
3028 4461 6.368516 CACCAAAAGAAACTTTTCTGCAAAGA 59.631 34.615 6.79 0.00 46.22 2.52
3063 4496 4.756642 ACCAACTAGCCTAAAACCGTTTAC 59.243 41.667 0.00 0.00 0.00 2.01
3077 4510 1.135575 GTCTTGCATGCACCAACTAGC 60.136 52.381 22.58 6.68 0.00 3.42
3104 4537 8.854614 AATAGATACAGATAAATGCAGGGAAC 57.145 34.615 0.00 0.00 0.00 3.62
3119 4552 9.952030 TCTCCAGAGTAGTGATAATAGATACAG 57.048 37.037 0.00 0.00 0.00 2.74
3121 4554 9.727859 TGTCTCCAGAGTAGTGATAATAGATAC 57.272 37.037 0.00 0.00 0.00 2.24
3125 4558 8.226819 TGTTGTCTCCAGAGTAGTGATAATAG 57.773 38.462 0.00 0.00 0.00 1.73
3126 4559 8.768501 ATGTTGTCTCCAGAGTAGTGATAATA 57.231 34.615 0.00 0.00 0.00 0.98
3127 4560 7.667575 ATGTTGTCTCCAGAGTAGTGATAAT 57.332 36.000 0.00 0.00 0.00 1.28
3128 4561 8.589701 TTATGTTGTCTCCAGAGTAGTGATAA 57.410 34.615 0.00 0.00 0.00 1.75
3129 4562 8.589701 TTTATGTTGTCTCCAGAGTAGTGATA 57.410 34.615 0.00 0.00 0.00 2.15
3130 4563 7.482169 TTTATGTTGTCTCCAGAGTAGTGAT 57.518 36.000 0.00 0.00 0.00 3.06
3132 4565 8.553459 AAATTTATGTTGTCTCCAGAGTAGTG 57.447 34.615 0.00 0.00 0.00 2.74
3133 4566 8.598041 AGAAATTTATGTTGTCTCCAGAGTAGT 58.402 33.333 0.00 0.00 0.00 2.73
3136 4569 6.150140 GCAGAAATTTATGTTGTCTCCAGAGT 59.850 38.462 13.94 0.00 0.00 3.24
3137 4570 6.373774 AGCAGAAATTTATGTTGTCTCCAGAG 59.626 38.462 13.94 0.00 0.00 3.35
3138 4571 6.240894 AGCAGAAATTTATGTTGTCTCCAGA 58.759 36.000 13.94 0.00 0.00 3.86
3139 4572 6.506500 AGCAGAAATTTATGTTGTCTCCAG 57.493 37.500 13.94 0.00 0.00 3.86
3140 4573 7.994425 TTAGCAGAAATTTATGTTGTCTCCA 57.006 32.000 13.94 0.00 0.00 3.86
3141 4574 8.515414 ACTTTAGCAGAAATTTATGTTGTCTCC 58.485 33.333 13.94 0.00 0.00 3.71
3192 4625 7.934120 GCCAAATCTAATGTACCATCTCTAAGT 59.066 37.037 0.00 0.00 0.00 2.24
3193 4626 7.116948 CGCCAAATCTAATGTACCATCTCTAAG 59.883 40.741 0.00 0.00 0.00 2.18
3194 4627 6.929049 CGCCAAATCTAATGTACCATCTCTAA 59.071 38.462 0.00 0.00 0.00 2.10
3211 4645 2.159667 GCCTTTTTGCATTCGCCAAATC 60.160 45.455 0.00 0.00 33.23 2.17
3238 4672 7.770433 TCAAGCAGAATTAGTATGTGCTACATT 59.230 33.333 7.02 0.00 43.63 2.71
3240 4674 6.535150 GTCAAGCAGAATTAGTATGTGCTACA 59.465 38.462 0.00 0.00 43.63 2.74
3247 4683 5.295292 CAGGTGGTCAAGCAGAATTAGTATG 59.705 44.000 0.00 0.00 0.00 2.39
3249 4685 4.323485 CCAGGTGGTCAAGCAGAATTAGTA 60.323 45.833 0.00 0.00 0.00 1.82
3254 4690 1.004044 CTCCAGGTGGTCAAGCAGAAT 59.996 52.381 0.00 0.00 36.34 2.40
3262 4698 2.122729 CCCCTCTCCAGGTGGTCA 59.877 66.667 0.00 0.00 38.30 4.02
3263 4699 2.689034 CCCCCTCTCCAGGTGGTC 60.689 72.222 0.00 0.00 38.30 4.02
3287 4723 5.402867 GTCTCTAATACTGAGGCGTATTTGC 59.597 44.000 2.04 0.00 39.87 3.68
3288 4724 6.504398 TGTCTCTAATACTGAGGCGTATTTG 58.496 40.000 2.04 1.35 39.87 2.32
3289 4725 6.710597 TGTCTCTAATACTGAGGCGTATTT 57.289 37.500 2.04 0.00 39.87 1.40
3290 4726 6.710597 TTGTCTCTAATACTGAGGCGTATT 57.289 37.500 0.00 0.00 41.53 1.89
3291 4727 6.710597 TTTGTCTCTAATACTGAGGCGTAT 57.289 37.500 0.00 0.00 38.86 3.06
3292 4728 6.071784 TGTTTTGTCTCTAATACTGAGGCGTA 60.072 38.462 0.00 0.00 38.86 4.42
3293 4729 5.169295 GTTTTGTCTCTAATACTGAGGCGT 58.831 41.667 0.00 0.00 38.86 5.68
3294 4730 5.168569 TGTTTTGTCTCTAATACTGAGGCG 58.831 41.667 0.00 0.00 38.86 5.52
3295 4731 6.092807 CCTTGTTTTGTCTCTAATACTGAGGC 59.907 42.308 0.00 0.00 36.76 4.70
3296 4732 7.386851 TCCTTGTTTTGTCTCTAATACTGAGG 58.613 38.462 0.00 0.00 32.78 3.86
3297 4733 8.833231 TTCCTTGTTTTGTCTCTAATACTGAG 57.167 34.615 0.00 0.00 0.00 3.35
3298 4734 8.429641 ACTTCCTTGTTTTGTCTCTAATACTGA 58.570 33.333 0.00 0.00 0.00 3.41
3299 4735 8.608844 ACTTCCTTGTTTTGTCTCTAATACTG 57.391 34.615 0.00 0.00 0.00 2.74
3311 4747 6.863275 ACAGAACCTAAACTTCCTTGTTTTG 58.137 36.000 0.00 0.00 40.23 2.44
3332 4768 8.850156 CCTAATCCATAAGGTTCCATAAAACAG 58.150 37.037 0.00 0.00 35.89 3.16
3395 4831 5.427378 GGGCCAAAACATTATACAAATGCT 58.573 37.500 4.39 0.00 0.00 3.79
3402 4839 5.932619 AAAGAGGGGCCAAAACATTATAC 57.067 39.130 4.39 0.00 0.00 1.47
3404 4841 4.597075 ACAAAAGAGGGGCCAAAACATTAT 59.403 37.500 4.39 0.00 0.00 1.28
3407 4844 2.104622 CACAAAAGAGGGGCCAAAACAT 59.895 45.455 4.39 0.00 0.00 2.71
3409 4846 1.484653 ACACAAAAGAGGGGCCAAAAC 59.515 47.619 4.39 0.00 0.00 2.43
3418 4855 3.274288 GCCCTATGAGACACAAAAGAGG 58.726 50.000 0.00 0.00 0.00 3.69
3456 4893 9.614792 TCCTTGTTTTCTCTCTAATAATTAGGC 57.385 33.333 0.00 0.00 34.00 3.93
3483 4920 8.080363 AGGTTCCATAAAACAAAACCTAAACA 57.920 30.769 3.36 0.00 45.96 2.83
3533 4970 5.891551 GCCCCTTCTATATTTCTTTGTTGGA 59.108 40.000 0.00 0.00 0.00 3.53
3545 4982 7.569240 GCACTATAGAAATGCCCCTTCTATAT 58.431 38.462 6.78 7.24 42.92 0.86
3546 4983 6.947464 GCACTATAGAAATGCCCCTTCTATA 58.053 40.000 6.78 14.03 41.94 1.31
3547 4984 5.810095 GCACTATAGAAATGCCCCTTCTAT 58.190 41.667 6.78 13.47 44.51 1.98
3548 4985 5.228945 GCACTATAGAAATGCCCCTTCTA 57.771 43.478 6.78 2.76 39.18 2.10
3549 4986 4.092116 GCACTATAGAAATGCCCCTTCT 57.908 45.455 6.78 0.00 37.00 2.85
3570 5007 0.967380 GACACAAAGAGGGGCCATGG 60.967 60.000 7.63 7.63 0.00 3.66
3571 5008 0.038744 AGACACAAAGAGGGGCCATG 59.961 55.000 4.39 0.00 0.00 3.66
3572 5009 0.329596 GAGACACAAAGAGGGGCCAT 59.670 55.000 4.39 0.00 0.00 4.40
3625 5063 1.382692 GCTCCTCCATGCTTTGCCTC 61.383 60.000 0.00 0.00 0.00 4.70
3627 5065 1.041447 ATGCTCCTCCATGCTTTGCC 61.041 55.000 0.00 0.00 0.00 4.52
3642 5080 0.395311 CACCTGAGCCCAATCATGCT 60.395 55.000 0.00 0.00 41.42 3.79
3650 5088 2.310930 AAAAAGCCCACCTGAGCCCA 62.311 55.000 0.00 0.00 0.00 5.36
3652 5090 1.115326 ACAAAAAGCCCACCTGAGCC 61.115 55.000 0.00 0.00 0.00 4.70
3713 5151 1.407258 CCTTAGAGTCGAGAGGGCAAG 59.593 57.143 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.