AutoCloner

Multiple sequence alignment - TraesCS3D01G426900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G426900	chr3D	100.000	3012	0	0	1	3012	540154390	540151379	0.000000e+00	5563.0
1	TraesCS3D01G426900	chr3D	88.842	717	57	6	1121	1836	540127695	540127001	0.000000e+00	859.0
2	TraesCS3D01G426900	chr3D	84.231	260	29	9	158	407	443724964	443725221	3.000000e-60	243.0
3	TraesCS3D01G426900	chr3D	86.486	185	14	9	2623	2807	540125657	540125484	3.060000e-45	193.0
4	TraesCS3D01G426900	chr3D	84.049	163	19	2	1	159	313121481	313121640	1.870000e-32	150.0
5	TraesCS3D01G426900	chr3D	83.436	163	23	2	1	159	484739504	484739342	6.730000e-32	148.0
6	TraesCS3D01G426900	chr3B	95.116	1904	38	12	414	2282	716297068	716295185	0.000000e+00	2950.0
7	TraesCS3D01G426900	chr3B	85.287	870	86	13	1005	1873	716241787	716240959	0.000000e+00	859.0
8	TraesCS3D01G426900	chr3B	92.763	456	24	6	2560	3012	716294800	716294351	0.000000e+00	651.0
9	TraesCS3D01G426900	chr3B	89.607	433	29	8	1	430	716299170	716298751	1.230000e-148	536.0
10	TraesCS3D01G426900	chr3B	89.928	278	17	5	2285	2559	716295131	716294862	6.180000e-92	348.0
11	TraesCS3D01G426900	chr3B	84.120	233	24	9	154	375	90855500	90855730	2.350000e-51	213.0
12	TraesCS3D01G426900	chr3B	76.000	275	31	13	1907	2175	716157733	716157488	3.170000e-20	110.0
13	TraesCS3D01G426900	chr3A	91.162	1471	62	20	706	2129	675154682	675153233	0.000000e+00	1934.0
14	TraesCS3D01G426900	chr3A	87.069	464	36	13	2560	3012	675152244	675151794	1.250000e-138	503.0
15	TraesCS3D01G426900	chr3A	92.073	164	12	1	2284	2446	675153070	675152907	2.340000e-56	230.0
16	TraesCS3D01G426900	chr3A	84.774	243	16	5	414	640	675154930	675154693	1.090000e-54	224.0
17	TraesCS3D01G426900	chr3A	92.000	125	7	1	2158	2282	675153244	675153123	3.990000e-39	172.0
18	TraesCS3D01G426900	chr2A	84.235	869	93	25	1129	1965	643007844	643008700	0.000000e+00	806.0
19	TraesCS3D01G426900	chr2A	82.814	867	102	32	1129	1975	643016370	643017209	0.000000e+00	732.0
20	TraesCS3D01G426900	chr2A	87.821	156	14	4	8	159	13817405	13817251	8.580000e-41	178.0
21	TraesCS3D01G426900	chr2B	86.920	711	70	14	1129	1823	584873711	584874414	0.000000e+00	776.0
22	TraesCS3D01G426900	chr2B	82.126	856	108	31	1129	1965	584893608	584894437	0.000000e+00	691.0
23	TraesCS3D01G426900	chr2B	97.561	123	3	0	2284	2406	793321475	793321597	8.460000e-51	211.0
24	TraesCS3D01G426900	chr2B	81.413	269	36	9	158	413	697508223	697507956	1.090000e-49	207.0
25	TraesCS3D01G426900	chr2B	83.436	163	23	1	1	159	21949315	21949477	6.730000e-32	148.0
26	TraesCS3D01G426900	chr2B	82.927	164	23	4	1	159	785742918	785742755	3.130000e-30	143.0
27	TraesCS3D01G426900	chr2B	79.845	129	21	4	2783	2908	142749583	142749709	4.140000e-14	89.8
28	TraesCS3D01G426900	chr2D	83.353	865	93	28	1129	1965	498276212	498277053	0.000000e+00	752.0
29	TraesCS3D01G426900	chr2D	82.984	858	102	25	1129	1975	498282278	498283102	0.000000e+00	736.0
30	TraesCS3D01G426900	chr2D	81.699	836	120	19	1129	1961	498265307	498266112	0.000000e+00	665.0
31	TraesCS3D01G426900	chr2D	100.000	28	0	0	2218	2245	498317807	498317834	5.000000e-03	52.8
32	TraesCS3D01G426900	chr7D	83.088	272	34	8	154	413	388908599	388908870	1.400000e-58	237.0
33	TraesCS3D01G426900	chr7D	84.746	59	5	3	2839	2895	94796690	94796746	4.190000e-04	56.5
34	TraesCS3D01G426900	chr1B	83.594	256	27	11	154	398	423933556	423933305	3.020000e-55	226.0
35	TraesCS3D01G426900	chr6A	82.593	270	31	10	158	414	496574656	496574922	1.090000e-54	224.0
36	TraesCS3D01G426900	chr1D	82.857	245	37	5	158	398	62690594	62690837	6.540000e-52	215.0
37	TraesCS3D01G426900	chr1D	79.221	154	22	8	2759	2911	95870077	95870221	6.870000e-17	99.0
38	TraesCS3D01G426900	chr4B	80.843	261	37	8	152	403	25810610	25810354	3.060000e-45	193.0
39	TraesCS3D01G426900	chr4B	81.250	112	13	6	2785	2894	610571528	610571423	1.920000e-12	84.2
40	TraesCS3D01G426900	chr4A	80.070	286	36	12	154	420	602255779	602255496	3.060000e-45	193.0
41	TraesCS3D01G426900	chr4A	84.472	161	21	3	4	160	593824486	593824646	4.020000e-34	156.0
42	TraesCS3D01G426900	chr5D	84.756	164	18	5	1	159	314381501	314381662	1.120000e-34	158.0
43	TraesCS3D01G426900	chr5A	84.756	164	18	5	1	159	408179686	408179847	1.120000e-34	158.0
44	TraesCS3D01G426900	chr5A	84.416	154	20	3	1	150	340412769	340412922	6.730000e-32	148.0
45	TraesCS3D01G426900	chr5B	78.571	126	22	4	2782	2906	440182143	440182264	8.950000e-11	78.7
46	TraesCS3D01G426900	chrUn	92.857	42	3	0	2859	2900	221267047	221267088	9.020000e-06	62.1
47	TraesCS3D01G426900	chr6D	94.595	37	2	0	2859	2895	466920032	466920068	1.170000e-04	58.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G426900	chr3D	540151379	540154390	3011	True	5563.00	5563	100.0000	1	3012	1	chr3D.!!$R2	3011
1	TraesCS3D01G426900	chr3D	540125484	540127695	2211	True	526.00	859	87.6640	1121	2807	2	chr3D.!!$R3	1686
2	TraesCS3D01G426900	chr3B	716294351	716299170	4819	True	1121.25	2950	91.8535	1	3012	4	chr3B.!!$R3	3011
3	TraesCS3D01G426900	chr3B	716240959	716241787	828	True	859.00	859	85.2870	1005	1873	1	chr3B.!!$R2	868
4	TraesCS3D01G426900	chr3A	675151794	675154930	3136	True	612.60	1934	89.4156	414	3012	5	chr3A.!!$R1	2598
5	TraesCS3D01G426900	chr2A	643007844	643008700	856	False	806.00	806	84.2350	1129	1965	1	chr2A.!!$F1	836
6	TraesCS3D01G426900	chr2A	643016370	643017209	839	False	732.00	732	82.8140	1129	1975	1	chr2A.!!$F2	846
7	TraesCS3D01G426900	chr2B	584873711	584874414	703	False	776.00	776	86.9200	1129	1823	1	chr2B.!!$F3	694
8	TraesCS3D01G426900	chr2B	584893608	584894437	829	False	691.00	691	82.1260	1129	1965	1	chr2B.!!$F4	836
9	TraesCS3D01G426900	chr2D	498276212	498277053	841	False	752.00	752	83.3530	1129	1965	1	chr2D.!!$F2	836
10	TraesCS3D01G426900	chr2D	498282278	498283102	824	False	736.00	736	82.9840	1129	1975	1	chr2D.!!$F3	846
11	TraesCS3D01G426900	chr2D	498265307	498266112	805	False	665.00	665	81.6990	1129	1961	1	chr2D.!!$F1	832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
115	116	0.178958	ACCCATCTACTCCCTAGCCG	60.179	60.0	0.0	0.0	0.0	5.52	F
416	420	0.179215	CAGAAATGCCGCACTCGTTC	60.179	55.0	0.0	0.0	0.0	3.95	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1202	2945	0.111639	GAGGAGCGGGAGGAGACTAT	59.888	60.0	0.00	0.0	44.43	2.12	R
2160	4214	0.817654	TAGTCATGTGCTCCTGACCG	59.182	55.0	17.15	0.0	42.18	4.79	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	4.778415	CACTCGCCTCCGTCGTGG	62.778	72.222	0.00	0.00	35.21	4.94
47	48	1.618343	TGTCGAGCATCTTCTTGTCCA	59.382	47.619	0.00	0.00	0.00	4.02
51	52	1.996191	GAGCATCTTCTTGTCCACGTC	59.004	52.381	0.00	0.00	0.00	4.34
53	54	0.716108	CATCTTCTTGTCCACGTCGC	59.284	55.000	0.00	0.00	0.00	5.19
54	55	0.389948	ATCTTCTTGTCCACGTCGCC	60.390	55.000	0.00	0.00	0.00	5.54
110	111	4.401657	GGCACCCATCTACTCCCT	57.598	61.111	0.00	0.00	0.00	4.20
111	112	3.552594	GGCACCCATCTACTCCCTA	57.447	57.895	0.00	0.00	0.00	3.53
112	113	1.343069	GGCACCCATCTACTCCCTAG	58.657	60.000	0.00	0.00	0.00	3.02
113	114	0.682292	GCACCCATCTACTCCCTAGC	59.318	60.000	0.00	0.00	0.00	3.42
114	115	1.343069	CACCCATCTACTCCCTAGCC	58.657	60.000	0.00	0.00	0.00	3.93
115	116	0.178958	ACCCATCTACTCCCTAGCCG	60.179	60.000	0.00	0.00	0.00	5.52
116	117	0.178958	CCCATCTACTCCCTAGCCGT	60.179	60.000	0.00	0.00	0.00	5.68
117	118	1.249407	CCATCTACTCCCTAGCCGTC	58.751	60.000	0.00	0.00	0.00	4.79
139	140	4.849329	GCGCCTGGACGAGGTACG	62.849	72.222	13.37	2.52	44.97	3.67
153	154	3.114065	GAGGTACGGCGAAGAATACTTG	58.886	50.000	16.62	0.00	36.39	3.16
161	162	5.047847	CGGCGAAGAATACTTGGAGAAATA	58.952	41.667	0.00	0.00	36.39	1.40
211	214	2.948979	CGGGGCTTTTTAGCACATGATA	59.051	45.455	0.00	0.00	40.62	2.15
233	236	8.010697	TGATACTATTCATCCTCAAAGTCCCTA	58.989	37.037	0.00	0.00	0.00	3.53
247	250	6.549364	TCAAAGTCCCTAAATTTGCTTCTTGA	59.451	34.615	0.00	0.00	34.63	3.02
249	252	4.455877	AGTCCCTAAATTTGCTTCTTGACG	59.544	41.667	0.00	0.00	0.00	4.35
264	267	1.131826	GACGGGTCGCATTTCAACG	59.868	57.895	0.00	0.00	0.00	4.10
403	407	1.299976	GGAGCCCGGTCACAGAAAT	59.700	57.895	0.00	0.00	0.00	2.17
416	420	0.179215	CAGAAATGCCGCACTCGTTC	60.179	55.000	0.00	0.00	0.00	3.95
950	2684	0.259065	ATCACCACTCTCCTCGGCTA	59.741	55.000	0.00	0.00	0.00	3.93
951	2685	0.394488	TCACCACTCTCCTCGGCTAG	60.394	60.000	0.00	0.00	0.00	3.42
952	2686	1.755008	ACCACTCTCCTCGGCTAGC	60.755	63.158	6.04	6.04	0.00	3.42
953	2687	1.454847	CCACTCTCCTCGGCTAGCT	60.455	63.158	15.72	0.00	0.00	3.32
964	2698	1.383248	GGCTAGCTCCTCCTCCCAA	60.383	63.158	15.72	0.00	0.00	4.12
976	2710	0.537371	CCTCCCAACAGTTCACCACC	60.537	60.000	0.00	0.00	0.00	4.61
1447	3226	1.371558	GACACCAACGCTTCCTCCT	59.628	57.895	0.00	0.00	0.00	3.69
1451	3230	2.815647	CAACGCTTCCTCCTCCGC	60.816	66.667	0.00	0.00	0.00	5.54
1452	3231	4.083862	AACGCTTCCTCCTCCGCC	62.084	66.667	0.00	0.00	0.00	6.13
1456	3235	4.168291	CTTCCTCCTCCGCCTGCC	62.168	72.222	0.00	0.00	0.00	4.85
1882	3919	1.942776	TGAGGATTCTGGCTGTCTCA	58.057	50.000	0.00	0.00	0.00	3.27
2085	4136	2.039084	AGGGAATTAGCCATGACCGATC	59.961	50.000	0.00	0.00	0.00	3.69
2153	4207	1.071567	GAGAAGTTCCGCGGACGAAG	61.072	60.000	31.19	0.00	43.93	3.79
2208	4262	5.246429	GGCTAGGGTAGTGTTATGCTCTTAT	59.754	44.000	0.00	0.00	0.00	1.73
2275	4329	1.330829	TCTGTTCCGTGATCGATCTCG	59.669	52.381	32.25	32.25	41.76	4.04
2282	4336	2.540973	CCGTGATCGATCTCGCACTAAA	60.541	50.000	33.27	8.07	41.05	1.85
2293	4398	3.623060	TCTCGCACTAAAAATGCTCATCC	59.377	43.478	0.00	0.00	41.10	3.51
2378	4687	2.624838	GTCGTCCCGTCCTCCATAATTA	59.375	50.000	0.00	0.00	0.00	1.40
2429	4741	1.200716	CGATCAGCATGCAGGTGTTTT	59.799	47.619	21.98	0.00	45.77	2.43
2483	5299	5.328886	GCTTGCAAGCGTCTTTTAAAAAT	57.671	34.783	33.75	0.00	42.88	1.82
2484	5300	5.132576	GCTTGCAAGCGTCTTTTAAAAATG	58.867	37.500	33.75	0.69	42.88	2.32
2485	5301	5.276820	GCTTGCAAGCGTCTTTTAAAAATGT	60.277	36.000	33.75	0.00	42.88	2.71
2487	5303	7.515998	GCTTGCAAGCGTCTTTTAAAAATGTTA	60.516	33.333	33.75	0.00	42.88	2.41
2488	5304	7.388290	TGCAAGCGTCTTTTAAAAATGTTAG	57.612	32.000	1.66	0.00	0.00	2.34
2490	5306	7.378461	TGCAAGCGTCTTTTAAAAATGTTAGAG	59.622	33.333	1.66	0.00	0.00	2.43
2491	5307	7.378728	GCAAGCGTCTTTTAAAAATGTTAGAGT	59.621	33.333	1.66	0.00	0.00	3.24
2531	5611	0.461548	TGGGCGTGCAATCACAAAAA	59.538	45.000	0.00	0.00	43.28	1.94
2596	5740	3.063510	CATCAGTCTGATGTGTGGGTT	57.936	47.619	27.96	0.00	46.80	4.11
2598	5742	1.000843	TCAGTCTGATGTGTGGGTTCG	59.999	52.381	0.00	0.00	0.00	3.95
2618	5859	7.510428	GTTCGTCGTGTAAGAACCAATATAA	57.490	36.000	0.00	0.00	39.74	0.98
2619	5860	7.607005	GTTCGTCGTGTAAGAACCAATATAAG	58.393	38.462	0.00	0.00	39.74	1.73
2620	5861	7.087409	TCGTCGTGTAAGAACCAATATAAGA	57.913	36.000	0.00	0.00	0.00	2.10
2621	5862	7.191551	TCGTCGTGTAAGAACCAATATAAGAG	58.808	38.462	0.00	0.00	0.00	2.85
2639	5880	4.713792	AGAGTAGATGCTAAAATGGGGG	57.286	45.455	0.00	0.00	0.00	5.40
2654	5895	0.033503	GGGGGTCCATGGTAAACCTG	60.034	60.000	18.08	0.00	36.82	4.00
2765	6006	6.109359	AGAAATACTCCCTTCTTCATTCACG	58.891	40.000	0.00	0.00	0.00	4.35
2768	6009	3.665190	ACTCCCTTCTTCATTCACGAAC	58.335	45.455	0.00	0.00	0.00	3.95
2910	6152	6.560003	TTGTGAACATAGGTGGTATCTCAT	57.440	37.500	0.00	0.00	0.00	2.90
2939	6181	7.210718	ACCTAAGGTTCAAATTAAACGGAAG	57.789	36.000	0.00	0.15	27.29	3.46

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
5	6	4.778415	CCACGACGGAGGCGAGTG	62.778	72.222	1.02	0.00	36.56	3.51
30	31	0.994995	CGTGGACAAGAAGATGCTCG	59.005	55.000	0.00	0.00	0.00	5.03
69	70	2.986306	GCTGTTCGCTGCAATGCCT	61.986	57.895	1.53	0.00	41.04	4.75
93	94	1.343069	CTAGGGAGTAGATGGGTGCC	58.657	60.000	0.00	0.00	0.00	5.01
104	105	2.439883	GACCGACGGCTAGGGAGT	60.440	66.667	15.39	0.00	0.00	3.85
127	128	2.672651	TTCGCCGTACCTCGTCCA	60.673	61.111	2.06	0.00	37.94	4.02
135	136	3.114065	CTCCAAGTATTCTTCGCCGTAC	58.886	50.000	0.00	0.00	0.00	3.67
137	138	1.822990	TCTCCAAGTATTCTTCGCCGT	59.177	47.619	0.00	0.00	0.00	5.68
139	140	5.050972	CGTATTTCTCCAAGTATTCTTCGCC	60.051	44.000	0.00	0.00	0.00	5.54
153	154	4.201920	GCCCTCATTTCAACGTATTTCTCC	60.202	45.833	0.00	0.00	0.00	3.71
161	162	1.202758	TCACAGCCCTCATTTCAACGT	60.203	47.619	0.00	0.00	0.00	3.99
188	189	0.039035	ATGTGCTAAAAAGCCCCGGA	59.961	50.000	0.73	0.00	0.00	5.14
189	190	0.173255	CATGTGCTAAAAAGCCCCGG	59.827	55.000	0.00	0.00	0.00	5.73
190	191	1.173043	TCATGTGCTAAAAAGCCCCG	58.827	50.000	0.00	0.00	0.00	5.73
191	192	3.954258	AGTATCATGTGCTAAAAAGCCCC	59.046	43.478	0.00	0.00	0.00	5.80
192	193	6.884280	ATAGTATCATGTGCTAAAAAGCCC	57.116	37.500	0.00	0.00	0.00	5.19
211	214	7.510675	TTTAGGGACTTTGAGGATGAATAGT	57.489	36.000	0.00	0.00	41.75	2.12
233	236	2.031157	CGACCCGTCAAGAAGCAAATTT	60.031	45.455	0.00	0.00	0.00	1.82
247	250	0.319727	TACGTTGAAATGCGACCCGT	60.320	50.000	0.00	0.00	0.00	5.28
249	252	3.120130	TGAAATACGTTGAAATGCGACCC	60.120	43.478	0.00	0.00	0.00	4.46
284	288	8.763049	ATACGAGGATGAAATGTATATGTGTG	57.237	34.615	0.00	0.00	0.00	3.82
403	407	3.422303	GCATGAACGAGTGCGGCA	61.422	61.111	0.00	0.00	43.17	5.69
416	420	6.541641	AGCTCATCTAGTTTAAAGGAAGCATG	59.458	38.462	0.00	0.00	0.00	4.06
452	2155	5.762825	TCATCTACGGCGGATAATATACC	57.237	43.478	13.24	0.00	0.00	2.73
950	2684	0.474660	AACTGTTGGGAGGAGGAGCT	60.475	55.000	0.00	0.00	0.00	4.09
951	2685	0.035915	GAACTGTTGGGAGGAGGAGC	60.036	60.000	0.00	0.00	0.00	4.70
952	2686	1.002544	GTGAACTGTTGGGAGGAGGAG	59.997	57.143	0.00	0.00	0.00	3.69
953	2687	1.056660	GTGAACTGTTGGGAGGAGGA	58.943	55.000	0.00	0.00	0.00	3.71
964	2698	4.265056	GGGGCGGTGGTGAACTGT	62.265	66.667	0.00	0.00	37.49	3.55
976	2710	4.315941	GGGCGATTCTAGGGGGCG	62.316	72.222	0.00	0.00	0.00	6.13
1199	2942	1.228306	AGCGGGAGGAGACTATCGG	60.228	63.158	0.00	0.00	44.43	4.18
1202	2945	0.111639	GAGGAGCGGGAGGAGACTAT	59.888	60.000	0.00	0.00	44.43	2.12
1203	2946	1.532728	GAGGAGCGGGAGGAGACTA	59.467	63.158	0.00	0.00	44.43	2.59
1391	3167	2.342279	CGTCGTTCAGGAAGCCCA	59.658	61.111	0.00	0.00	33.88	5.36
2060	4111	2.378038	GTCATGGCTAATTCCCTTGCA	58.622	47.619	0.00	0.00	0.00	4.08
2085	4136	2.416432	GGGTCTTCCTCGTCCCTCG	61.416	68.421	0.00	0.00	37.18	4.63
2160	4214	0.817654	TAGTCATGTGCTCCTGACCG	59.182	55.000	17.15	0.00	42.18	4.79
2208	4262	8.407832	CCAAATGCATACAACAGAATAGATCAA	58.592	33.333	0.00	0.00	0.00	2.57
2282	4336	8.585471	TGAAGATCTAAAAAGGATGAGCATTT	57.415	30.769	0.00	0.00	30.65	2.32
2378	4687	1.079127	CGGAGCAGAACGGGAACAT	60.079	57.895	0.00	0.00	0.00	2.71
2479	5295	9.632638	ACCAGCATGATAATACTCTAACATTTT	57.367	29.630	0.00	0.00	39.69	1.82
2483	5299	5.991606	GCACCAGCATGATAATACTCTAACA	59.008	40.000	0.00	0.00	39.69	2.41
2484	5300	6.473397	GCACCAGCATGATAATACTCTAAC	57.527	41.667	0.00	0.00	39.69	2.34
2549	5629	3.318275	ACTCTCTCTCTTTACACGTTGCA	59.682	43.478	0.00	0.00	0.00	4.08
2553	5633	2.229302	GCCACTCTCTCTCTTTACACGT	59.771	50.000	0.00	0.00	0.00	4.49
2596	5740	7.087409	TCTTATATTGGTTCTTACACGACGA	57.913	36.000	0.00	0.00	0.00	4.20
2598	5742	9.448294	CTACTCTTATATTGGTTCTTACACGAC	57.552	37.037	0.00	0.00	0.00	4.34
2615	5856	6.332901	ACCCCCATTTTAGCATCTACTCTTAT	59.667	38.462	0.00	0.00	0.00	1.73
2616	5857	5.670361	ACCCCCATTTTAGCATCTACTCTTA	59.330	40.000	0.00	0.00	0.00	2.10
2617	5858	4.478686	ACCCCCATTTTAGCATCTACTCTT	59.521	41.667	0.00	0.00	0.00	2.85
2618	5859	4.047883	ACCCCCATTTTAGCATCTACTCT	58.952	43.478	0.00	0.00	0.00	3.24
2619	5860	4.390264	GACCCCCATTTTAGCATCTACTC	58.610	47.826	0.00	0.00	0.00	2.59
2620	5861	3.138468	GGACCCCCATTTTAGCATCTACT	59.862	47.826	0.00	0.00	0.00	2.57
2621	5862	3.117663	TGGACCCCCATTTTAGCATCTAC	60.118	47.826	0.00	0.00	37.58	2.59
2639	5880	2.552315	CACACACAGGTTTACCATGGAC	59.448	50.000	21.47	6.07	38.89	4.02
2654	5895	3.066064	TGTGTACCAGATTTTGCACACAC	59.934	43.478	1.48	0.00	41.91	3.82
2896	6138	7.257308	CCTTAGGTACCTATGAGATACCACCTA	60.257	44.444	28.18	7.91	36.79	3.08
2900	6142	6.541264	ACCTTAGGTACCTATGAGATACCA	57.459	41.667	28.18	9.55	36.79	3.25
2910	6152	7.823799	CCGTTTAATTTGAACCTTAGGTACCTA	59.176	37.037	18.10	18.10	33.12	3.08

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.