Multiple sequence alignment - TraesCS3D01G426700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G426700 chr3D 100.000 7454 0 0 1 7454 539911054 539903601 0.000000e+00 13766.0
1 TraesCS3D01G426700 chr3D 94.749 419 20 2 6257 6674 352932266 352932683 0.000000e+00 651.0
2 TraesCS3D01G426700 chr3D 94.511 419 21 2 6257 6674 566208833 566208416 0.000000e+00 645.0
3 TraesCS3D01G426700 chr3D 94.033 419 23 2 6257 6674 246226848 246227265 1.060000e-177 634.0
4 TraesCS3D01G426700 chr3D 93.317 419 26 2 6257 6674 256329951 256330368 1.060000e-172 617.0
5 TraesCS3D01G426700 chr3D 96.491 171 6 0 4202 4372 275109391 275109561 4.400000e-72 283.0
6 TraesCS3D01G426700 chr3D 93.814 97 3 1 5877 5970 566208950 566208854 7.800000e-30 143.0
7 TraesCS3D01G426700 chr3D 93.750 96 3 1 5878 5970 256329835 256329930 2.800000e-29 141.0
8 TraesCS3D01G426700 chr3D 90.291 103 7 1 5871 5970 352932143 352932245 1.690000e-26 132.0
9 TraesCS3D01G426700 chr3D 83.036 112 17 2 6772 6883 539903937 539903828 4.760000e-17 100.0
10 TraesCS3D01G426700 chr3D 83.036 112 17 2 7118 7227 539904283 539904172 4.760000e-17 100.0
11 TraesCS3D01G426700 chr3B 96.742 4328 96 14 2831 7155 715890898 715886613 0.000000e+00 7169.0
12 TraesCS3D01G426700 chr3B 94.094 1253 35 9 1461 2701 715892121 715890896 0.000000e+00 1868.0
13 TraesCS3D01G426700 chr3B 81.005 816 45 45 730 1497 715893072 715892319 1.410000e-151 547.0
14 TraesCS3D01G426700 chr3B 88.426 216 18 4 7231 7440 715886344 715886130 3.450000e-63 254.0
15 TraesCS3D01G426700 chr3B 100.000 134 0 0 2701 2834 229465642 229465509 1.610000e-61 248.0
16 TraesCS3D01G426700 chr3B 82.143 112 18 2 7118 7227 715886989 715886878 2.210000e-15 95.3
17 TraesCS3D01G426700 chr3A 93.661 2871 149 15 4375 7223 674753895 674751036 0.000000e+00 4263.0
18 TraesCS3D01G426700 chr3A 85.817 2644 225 70 156 2689 674757902 674755299 0.000000e+00 2667.0
19 TraesCS3D01G426700 chr3A 86.909 1184 119 21 2986 4159 674755077 674753920 0.000000e+00 1295.0
20 TraesCS3D01G426700 chr3A 91.038 212 13 4 7231 7438 674750999 674750790 1.580000e-71 281.0
21 TraesCS3D01G426700 chr3A 90.598 117 9 2 2834 2948 674755283 674755167 3.600000e-33 154.0
22 TraesCS3D01G426700 chr3A 84.821 112 14 3 7119 7227 674751489 674751378 7.910000e-20 110.0
23 TraesCS3D01G426700 chr3A 89.189 74 8 0 6904 6977 629647012 629646939 7.960000e-15 93.5
24 TraesCS3D01G426700 chr5B 78.712 1273 202 36 1457 2687 697287714 697288959 0.000000e+00 785.0
25 TraesCS3D01G426700 chr5B 97.619 168 4 0 4205 4372 206998325 206998158 9.460000e-74 289.0
26 TraesCS3D01G426700 chr7D 95.227 419 18 2 6257 6674 496782159 496782576 0.000000e+00 662.0
27 TraesCS3D01G426700 chr4B 94.737 418 21 1 6257 6674 546801147 546800731 0.000000e+00 649.0
28 TraesCS3D01G426700 chr4B 97.006 167 5 0 4205 4371 19074366 19074200 1.580000e-71 281.0
29 TraesCS3D01G426700 chr4B 96.250 80 3 0 5891 5970 546801247 546801168 1.690000e-26 132.0
30 TraesCS3D01G426700 chr7A 93.795 419 22 3 6257 6674 453980049 453979634 1.770000e-175 627.0
31 TraesCS3D01G426700 chr7A 94.987 399 19 1 5891 6288 141563673 141563275 6.350000e-175 625.0
32 TraesCS3D01G426700 chr7A 94.486 399 21 1 5891 6288 142127442 142127044 1.370000e-171 614.0
33 TraesCS3D01G426700 chr7A 92.706 425 27 2 5868 6288 140980857 140980433 1.780000e-170 610.0
34 TraesCS3D01G426700 chr7A 93.985 399 23 1 5891 6288 141257996 141257598 2.980000e-168 603.0
35 TraesCS3D01G426700 chr7A 93.734 399 24 1 5891 6288 141844347 141843949 1.380000e-166 597.0
36 TraesCS3D01G426700 chr7A 97.857 140 2 1 2701 2839 428342929 428342790 2.690000e-59 241.0
37 TraesCS3D01G426700 chr7A 89.333 75 8 0 6903 6977 182124079 182124153 2.210000e-15 95.3
38 TraesCS3D01G426700 chr2B 93.902 410 24 1 5891 6300 314761440 314761032 1.060000e-172 617.0
39 TraesCS3D01G426700 chr2B 99.265 136 1 0 2701 2836 259014108 259013973 5.780000e-61 246.0
40 TraesCS3D01G426700 chr4A 94.486 399 21 1 5891 6288 588928601 588928203 1.370000e-171 614.0
41 TraesCS3D01G426700 chr4A 88.312 77 9 0 6901 6977 167571029 167570953 7.960000e-15 93.5
42 TraesCS3D01G426700 chr5D 78.049 1066 165 41 1456 2471 553676594 553675548 6.400000e-170 608.0
43 TraesCS3D01G426700 chr5D 97.024 168 5 0 4205 4372 238175969 238175802 4.400000e-72 283.0
44 TraesCS3D01G426700 chr5D 98.113 159 3 0 1 159 351900650 351900808 2.050000e-70 278.0
45 TraesCS3D01G426700 chr5D 96.933 163 4 1 1 163 545520910 545521071 9.530000e-69 272.0
46 TraesCS3D01G426700 chr5D 95.322 171 7 1 1 171 237653396 237653565 3.430000e-68 270.0
47 TraesCS3D01G426700 chr5D 96.386 166 3 3 1 166 335989690 335989852 3.430000e-68 270.0
48 TraesCS3D01G426700 chr5D 99.254 134 1 0 2701 2834 292148028 292147895 7.470000e-60 243.0
49 TraesCS3D01G426700 chr5D 86.957 138 18 0 6978 7115 8805367 8805504 1.000000e-33 156.0
50 TraesCS3D01G426700 chr5D 92.754 69 5 0 6904 6972 362006617 362006685 4.760000e-17 100.0
51 TraesCS3D01G426700 chr4D 78.571 476 77 11 170 621 32217410 32216936 2.630000e-74 291.0
52 TraesCS3D01G426700 chr4D 96.491 171 6 0 4202 4372 122964373 122964543 4.400000e-72 283.0
53 TraesCS3D01G426700 chr4D 96.491 171 6 0 4202 4372 313597627 313597797 4.400000e-72 283.0
54 TraesCS3D01G426700 chr4D 87.681 138 17 0 6978 7115 178827858 178827721 2.150000e-35 161.0
55 TraesCS3D01G426700 chr6D 97.024 168 5 0 4205 4372 160204516 160204349 4.400000e-72 283.0
56 TraesCS3D01G426700 chr6D 99.254 134 1 0 2701 2834 85800139 85800006 7.470000e-60 243.0
57 TraesCS3D01G426700 chr6D 88.406 138 16 0 6978 7115 206587580 206587717 4.630000e-37 167.0
58 TraesCS3D01G426700 chr6D 88.889 135 15 0 6981 7115 454820551 454820417 4.630000e-37 167.0
59 TraesCS3D01G426700 chr6D 84.746 118 13 4 216 330 432808372 432808257 6.110000e-21 113.0
60 TraesCS3D01G426700 chr6D 90.541 74 7 0 6904 6977 351097508 351097435 1.710000e-16 99.0
61 TraesCS3D01G426700 chr5A 97.024 168 5 0 4205 4372 444365932 444365765 4.400000e-72 283.0
62 TraesCS3D01G426700 chr5A 88.148 135 14 2 6982 7116 107771781 107771649 7.740000e-35 159.0
63 TraesCS3D01G426700 chr2D 98.726 157 2 0 1 157 323018922 323019078 5.700000e-71 279.0
64 TraesCS3D01G426700 chr2D 95.833 168 6 1 1 167 119214225 119214392 3.430000e-68 270.0
65 TraesCS3D01G426700 chr1D 96.407 167 4 2 1 166 386906108 386905943 2.650000e-69 274.0
66 TraesCS3D01G426700 chr1D 94.737 171 9 0 1 171 310530903 310530733 4.430000e-67 267.0
67 TraesCS3D01G426700 chr1D 93.548 155 7 3 2701 2855 1070867 1071018 2.090000e-55 228.0
68 TraesCS3D01G426700 chr1D 76.246 341 66 12 172 504 346667259 346666926 4.630000e-37 167.0
69 TraesCS3D01G426700 chr1A 94.828 174 4 5 1 171 39680364 39680193 4.430000e-67 267.0
70 TraesCS3D01G426700 chr1A 87.681 138 16 1 6978 7115 169552583 169552447 7.740000e-35 159.0
71 TraesCS3D01G426700 chr1A 88.462 78 7 2 6896 6971 103990403 103990480 7.960000e-15 93.5
72 TraesCS3D01G426700 chr6B 99.259 135 1 0 2701 2835 487538402 487538536 2.080000e-60 244.0
73 TraesCS3D01G426700 chr6B 99.254 134 1 0 2701 2834 120648886 120649019 7.470000e-60 243.0
74 TraesCS3D01G426700 chr2A 97.857 140 3 0 2701 2840 502329372 502329233 7.470000e-60 243.0
75 TraesCS3D01G426700 chr2A 87.407 135 17 0 6981 7115 778825739 778825873 1.000000e-33 156.0
76 TraesCS3D01G426700 chr2A 90.541 74 7 0 6904 6977 163668692 163668619 1.710000e-16 99.0
77 TraesCS3D01G426700 chr1B 83.041 171 25 3 156 324 649502918 649503086 1.300000e-32 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G426700 chr3D 539903601 539911054 7453 True 13766.000000 13766 100.000000 1 7454 1 chr3D.!!$R1 7453
1 TraesCS3D01G426700 chr3D 566208416 566208950 534 True 394.000000 645 94.162500 5877 6674 2 chr3D.!!$R3 797
2 TraesCS3D01G426700 chr3D 352932143 352932683 540 False 391.500000 651 92.520000 5871 6674 2 chr3D.!!$F4 803
3 TraesCS3D01G426700 chr3D 256329835 256330368 533 False 379.000000 617 93.533500 5878 6674 2 chr3D.!!$F3 796
4 TraesCS3D01G426700 chr3B 715886130 715890898 4768 True 3711.500000 7169 92.584000 2831 7440 2 chr3B.!!$R2 4609
5 TraesCS3D01G426700 chr3B 715886878 715893072 6194 True 836.766667 1868 85.747333 730 7227 3 chr3B.!!$R3 6497
6 TraesCS3D01G426700 chr3A 674750790 674757902 7112 True 1461.666667 4263 88.807333 156 7438 6 chr3A.!!$R2 7282
7 TraesCS3D01G426700 chr5B 697287714 697288959 1245 False 785.000000 785 78.712000 1457 2687 1 chr5B.!!$F1 1230
8 TraesCS3D01G426700 chr4B 546800731 546801247 516 True 390.500000 649 95.493500 5891 6674 2 chr4B.!!$R2 783
9 TraesCS3D01G426700 chr5D 553675548 553676594 1046 True 608.000000 608 78.049000 1456 2471 1 chr5D.!!$R3 1015

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.038892 ACGACTACATCAACGGCGTT 60.039 50.0 21.19 21.19 0.00 4.84 F
97 98 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.0 3.79 3.79 38.76 3.96 F
116 117 0.391528 TCACCATGATCCTGCGTGTG 60.392 55.0 14.49 8.57 0.00 3.82 F
232 233 0.393537 CTGGCTGGCTAGGGTTTCTG 60.394 60.0 0.00 0.00 0.00 3.02 F
639 651 0.396974 ACTTTGGCTTTGGCACCAGA 60.397 50.0 0.00 0.00 37.98 3.86 F
1132 1220 0.400213 TAGGTTTGGGTGCTGTGAGG 59.600 55.0 0.00 0.00 0.00 3.86 F
2722 3134 0.394565 CTAGCTATGGACAGGGGTGC 59.605 60.0 0.00 0.00 35.66 5.01 F
2751 3163 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.0 0.00 0.00 40.48 4.09 F
4704 5219 0.034896 AACCCTACAGTGAAGCACGG 59.965 55.0 0.00 0.00 39.64 4.94 F
5420 5935 0.535780 CTGCCAAGACACCTGCTTCA 60.536 55.0 0.00 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1387 1496 0.179000 ACGCAGAGGGATCACCATTC 59.821 55.000 0.00 0.00 43.89 2.67 R
1388 1497 0.179000 GACGCAGAGGGATCACCATT 59.821 55.000 0.00 0.00 43.89 3.16 R
1564 1908 0.304705 CGCAGTTCCGCAATATGTCC 59.695 55.000 0.00 0.00 0.00 4.02 R
2056 2440 0.886490 CCGCCTCATGAATGTAGGGC 60.886 60.000 10.58 10.58 36.50 5.19 R
2258 2664 1.584724 TCCTCCCTGAGTTCCCATTC 58.415 55.000 0.00 0.00 0.00 2.67 R
2732 3144 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49 R
4691 5206 1.608590 CAAATTCCCGTGCTTCACTGT 59.391 47.619 0.00 0.00 31.34 3.55 R
5037 5552 1.226974 CCAGTCGTATCCCAGTGCG 60.227 63.158 0.00 0.00 0.00 5.34 R
6244 6762 0.530431 CACCTTTGCTTGTTGGTGCC 60.530 55.000 0.00 0.00 42.55 5.01 R
7425 8162 0.179936 ATTGCTACTGCCTCTGCCTC 59.820 55.000 0.00 0.00 38.71 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.715896 TGAAGACGTACGACTACATCAAC 58.284 43.478 24.41 6.55 0.00 3.18
23 24 3.380486 AGACGTACGACTACATCAACG 57.620 47.619 24.41 0.00 40.48 4.10
24 25 2.094894 AGACGTACGACTACATCAACGG 59.905 50.000 24.41 0.00 39.50 4.44
25 26 1.186030 CGTACGACTACATCAACGGC 58.814 55.000 10.44 0.00 34.34 5.68
26 27 1.186030 GTACGACTACATCAACGGCG 58.814 55.000 4.80 4.80 0.00 6.46
27 28 0.804364 TACGACTACATCAACGGCGT 59.196 50.000 6.77 6.77 0.00 5.68
28 29 0.038892 ACGACTACATCAACGGCGTT 60.039 50.000 21.19 21.19 0.00 4.84
29 30 0.365523 CGACTACATCAACGGCGTTG 59.634 55.000 38.99 38.99 43.99 4.10
30 31 1.425412 GACTACATCAACGGCGTTGT 58.575 50.000 40.96 30.21 43.23 3.32
31 32 1.126113 GACTACATCAACGGCGTTGTG 59.874 52.381 40.96 36.44 43.23 3.33
32 33 0.179225 CTACATCAACGGCGTTGTGC 60.179 55.000 40.96 0.00 43.23 4.57
33 34 0.601576 TACATCAACGGCGTTGTGCT 60.602 50.000 40.96 28.52 43.23 4.40
34 35 0.601576 ACATCAACGGCGTTGTGCTA 60.602 50.000 40.96 27.96 43.23 3.49
35 36 0.515127 CATCAACGGCGTTGTGCTAA 59.485 50.000 40.96 27.63 43.23 3.09
36 37 0.515564 ATCAACGGCGTTGTGCTAAC 59.484 50.000 40.96 0.00 43.23 2.34
37 38 1.438059 CAACGGCGTTGTGCTAACG 60.438 57.895 37.05 15.29 45.43 3.18
43 44 1.129809 CGTTGTGCTAACGCTTCCG 59.870 57.895 12.46 0.00 36.82 4.30
44 45 1.154469 GTTGTGCTAACGCTTCCGC 60.154 57.895 0.00 0.00 38.22 5.54
45 46 1.301401 TTGTGCTAACGCTTCCGCT 60.301 52.632 0.00 0.00 38.22 5.52
46 47 0.882927 TTGTGCTAACGCTTCCGCTT 60.883 50.000 0.00 0.00 38.22 4.68
47 48 0.882927 TGTGCTAACGCTTCCGCTTT 60.883 50.000 0.00 0.00 38.22 3.51
48 49 0.179222 GTGCTAACGCTTCCGCTTTC 60.179 55.000 0.00 0.00 38.22 2.62
49 50 1.058903 GCTAACGCTTCCGCTTTCG 59.941 57.895 0.00 0.00 38.22 3.46
67 68 2.101700 GGTCTACGAGGGTACGTGG 58.898 63.158 0.00 0.00 46.02 4.94
69 70 3.159298 TCTACGAGGGTACGTGGAC 57.841 57.895 0.00 0.00 45.53 4.02
70 71 0.324614 TCTACGAGGGTACGTGGACA 59.675 55.000 0.00 0.00 45.53 4.02
71 72 1.167851 CTACGAGGGTACGTGGACAA 58.832 55.000 0.00 0.00 44.98 3.18
72 73 0.881118 TACGAGGGTACGTGGACAAC 59.119 55.000 0.00 0.00 46.02 3.32
73 74 1.108727 ACGAGGGTACGTGGACAACA 61.109 55.000 0.00 0.00 44.84 3.33
74 75 0.665369 CGAGGGTACGTGGACAACAC 60.665 60.000 0.00 0.00 46.78 3.32
82 83 2.453242 GTGGACAACACTCTCCCCT 58.547 57.895 0.00 0.00 46.72 4.79
83 84 0.321996 GTGGACAACACTCTCCCCTC 59.678 60.000 0.00 0.00 46.72 4.30
84 85 0.191064 TGGACAACACTCTCCCCTCT 59.809 55.000 0.00 0.00 0.00 3.69
85 86 0.899019 GGACAACACTCTCCCCTCTC 59.101 60.000 0.00 0.00 0.00 3.20
86 87 0.528470 GACAACACTCTCCCCTCTCG 59.472 60.000 0.00 0.00 0.00 4.04
87 88 0.178958 ACAACACTCTCCCCTCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
88 89 0.969894 CAACACTCTCCCCTCTCGTT 59.030 55.000 0.00 0.00 0.00 3.85
89 90 0.969894 AACACTCTCCCCTCTCGTTG 59.030 55.000 0.00 0.00 0.00 4.10
90 91 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
91 92 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
92 93 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
93 94 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
94 95 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
95 96 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
96 97 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
97 98 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
98 99 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
99 100 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
100 101 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
101 102 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
102 103 1.206849 TCTCGTTGCTATGCATCACCA 59.793 47.619 0.19 0.00 38.76 4.17
103 104 2.158914 TCTCGTTGCTATGCATCACCAT 60.159 45.455 0.19 0.00 38.76 3.55
104 105 1.941975 TCGTTGCTATGCATCACCATG 59.058 47.619 0.19 0.00 38.76 3.66
105 106 1.941975 CGTTGCTATGCATCACCATGA 59.058 47.619 0.19 0.00 38.76 3.07
106 107 2.551032 CGTTGCTATGCATCACCATGAT 59.449 45.455 0.19 0.00 38.76 2.45
107 108 3.364664 CGTTGCTATGCATCACCATGATC 60.365 47.826 0.19 0.00 38.76 2.92
108 109 2.786777 TGCTATGCATCACCATGATCC 58.213 47.619 0.19 0.00 34.28 3.36
109 110 2.374170 TGCTATGCATCACCATGATCCT 59.626 45.455 0.19 0.00 34.28 3.24
110 111 2.747989 GCTATGCATCACCATGATCCTG 59.252 50.000 0.19 0.00 34.28 3.86
111 112 1.617322 ATGCATCACCATGATCCTGC 58.383 50.000 0.00 0.00 34.28 4.85
112 113 0.816421 TGCATCACCATGATCCTGCG 60.816 55.000 0.00 0.00 34.28 5.18
113 114 0.816825 GCATCACCATGATCCTGCGT 60.817 55.000 0.00 0.00 34.28 5.24
114 115 0.942252 CATCACCATGATCCTGCGTG 59.058 55.000 0.00 10.98 34.28 5.34
115 116 0.543277 ATCACCATGATCCTGCGTGT 59.457 50.000 14.49 0.00 29.59 4.49
116 117 0.391528 TCACCATGATCCTGCGTGTG 60.392 55.000 14.49 8.57 0.00 3.82
117 118 1.746615 ACCATGATCCTGCGTGTGC 60.747 57.895 0.00 0.00 43.20 4.57
125 126 4.185413 CTGCGTGTGCGTAGGATT 57.815 55.556 0.00 0.00 45.01 3.01
126 127 2.456000 CTGCGTGTGCGTAGGATTT 58.544 52.632 0.00 0.00 45.01 2.17
127 128 0.796312 CTGCGTGTGCGTAGGATTTT 59.204 50.000 0.00 0.00 45.01 1.82
128 129 1.196808 CTGCGTGTGCGTAGGATTTTT 59.803 47.619 0.00 0.00 45.01 1.94
150 151 6.956202 TTTTTGAAATTACTACGTTCCCCA 57.044 33.333 0.00 0.00 0.00 4.96
151 152 6.956202 TTTTGAAATTACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
152 153 5.945466 TTGAAATTACTACGTTCCCCAAC 57.055 39.130 0.00 0.00 0.00 3.77
153 154 4.970711 TGAAATTACTACGTTCCCCAACA 58.029 39.130 0.00 0.00 32.14 3.33
154 155 5.562635 TGAAATTACTACGTTCCCCAACAT 58.437 37.500 0.00 0.00 32.14 2.71
197 198 0.910088 CTTCCCCTTCCCCTTCTCGT 60.910 60.000 0.00 0.00 0.00 4.18
232 233 0.393537 CTGGCTGGCTAGGGTTTCTG 60.394 60.000 0.00 0.00 0.00 3.02
237 238 1.449778 GGCTAGGGTTTCTGGTCGC 60.450 63.158 0.00 0.00 0.00 5.19
253 254 3.459063 GCCGGCGAGGGAGTAAGT 61.459 66.667 12.58 0.00 41.48 2.24
257 258 1.218316 GGCGAGGGAGTAAGTGTGG 59.782 63.158 0.00 0.00 0.00 4.17
259 260 1.218316 CGAGGGAGTAAGTGTGGCC 59.782 63.158 0.00 0.00 0.00 5.36
280 281 1.210478 AGATGTGGACGGGAATGGAAG 59.790 52.381 0.00 0.00 0.00 3.46
292 293 1.566231 GAATGGAAGTGGATGACCCCT 59.434 52.381 0.00 0.00 34.81 4.79
298 299 2.073101 GTGGATGACCCCTCTCCCC 61.073 68.421 0.00 0.00 34.81 4.81
300 301 1.768077 GGATGACCCCTCTCCCCTG 60.768 68.421 0.00 0.00 0.00 4.45
324 329 1.648681 GCGCTTGCATTAAAAAGGACG 59.351 47.619 0.00 0.00 38.92 4.79
331 336 2.094234 GCATTAAAAAGGACGGCCACAT 60.094 45.455 11.69 0.00 36.29 3.21
333 338 1.540267 TAAAAAGGACGGCCACATGG 58.460 50.000 11.69 0.00 36.29 3.66
403 408 1.805945 GACAGCGAGCGGTAGTTGG 60.806 63.158 15.10 0.00 0.00 3.77
405 410 2.995574 AGCGAGCGGTAGTTGGGT 60.996 61.111 0.00 0.00 0.00 4.51
406 411 2.813908 GCGAGCGGTAGTTGGGTG 60.814 66.667 0.00 0.00 0.00 4.61
411 416 3.697747 CGGTAGTTGGGTGGCCGA 61.698 66.667 0.00 0.00 44.57 5.54
480 485 3.960237 TCCGCGTGGACACAAATC 58.040 55.556 15.21 0.00 40.17 2.17
482 487 0.948623 TCCGCGTGGACACAAATCAG 60.949 55.000 15.21 0.00 40.17 2.90
484 489 1.210155 GCGTGGACACAAATCAGGC 59.790 57.895 3.12 0.00 35.64 4.85
495 500 6.029346 ACACAAATCAGGCTCAAATTTAGG 57.971 37.500 0.00 0.00 0.00 2.69
583 595 0.727970 CGACCCAAACAAACACGTGA 59.272 50.000 25.01 0.00 0.00 4.35
602 614 2.433664 GACGAATTGGGTCGCGGT 60.434 61.111 6.13 0.00 45.00 5.68
612 624 2.315386 GGTCGCGGTGTTGGAGTTC 61.315 63.158 6.13 0.00 0.00 3.01
639 651 0.396974 ACTTTGGCTTTGGCACCAGA 60.397 50.000 0.00 0.00 37.98 3.86
645 657 0.957888 GCTTTGGCACCAGACCTCTC 60.958 60.000 0.00 0.00 38.54 3.20
647 659 1.072965 CTTTGGCACCAGACCTCTCTT 59.927 52.381 0.00 0.00 0.00 2.85
690 702 2.125512 CGCAGTTTCCCCTCTCCG 60.126 66.667 0.00 0.00 0.00 4.63
698 731 1.265454 TTCCCCTCTCCGCTCTTTCC 61.265 60.000 0.00 0.00 0.00 3.13
721 754 2.225420 CCTACTAATCCCCCTCTCCCTC 60.225 59.091 0.00 0.00 0.00 4.30
784 819 3.083349 TGGCATCTCTGGACCGGG 61.083 66.667 6.32 0.00 0.00 5.73
804 839 1.136147 CGAGTGATTGCCTGCTTGC 59.864 57.895 0.00 0.00 0.00 4.01
838 878 7.233553 TCCCAGATCCAACAGTATAGTATTCAG 59.766 40.741 0.00 0.00 0.00 3.02
845 885 7.399191 TCCAACAGTATAGTATTCAGGAAGTGT 59.601 37.037 0.00 0.00 0.00 3.55
846 886 7.492669 CCAACAGTATAGTATTCAGGAAGTGTG 59.507 40.741 0.00 0.00 0.00 3.82
847 887 6.574350 ACAGTATAGTATTCAGGAAGTGTGC 58.426 40.000 0.00 0.00 0.00 4.57
848 888 5.986135 CAGTATAGTATTCAGGAAGTGTGCC 59.014 44.000 0.00 0.00 0.00 5.01
849 889 5.661312 AGTATAGTATTCAGGAAGTGTGCCA 59.339 40.000 0.00 0.00 0.00 4.92
850 890 3.059352 AGTATTCAGGAAGTGTGCCAC 57.941 47.619 0.00 0.00 34.10 5.01
936 981 2.426023 GCCTGCGGGGATATTCGT 59.574 61.111 15.02 0.00 37.23 3.85
937 982 1.668151 GCCTGCGGGGATATTCGTC 60.668 63.158 15.02 0.00 37.23 4.20
985 1034 3.703127 GGTCCCTCGCCGGAGTTT 61.703 66.667 5.05 0.00 38.70 2.66
1020 1075 1.211190 GCAGCAGCAGCAAGGTAAC 59.789 57.895 4.63 0.00 45.49 2.50
1057 1138 2.817258 CGGTTCCCAAGTTGCAATCTTA 59.183 45.455 0.59 0.00 0.00 2.10
1090 1178 2.464459 CGGTTCCTGCGGCTGATTC 61.464 63.158 8.57 0.00 0.00 2.52
1102 1190 2.354704 CGGCTGATTCTGGTTACCAAGA 60.355 50.000 5.31 2.52 30.80 3.02
1106 1194 2.642311 TGATTCTGGTTACCAAGAGCCA 59.358 45.455 5.31 4.80 30.80 4.75
1130 1218 1.477923 GGTTAGGTTTGGGTGCTGTGA 60.478 52.381 0.00 0.00 0.00 3.58
1132 1220 0.400213 TAGGTTTGGGTGCTGTGAGG 59.600 55.000 0.00 0.00 0.00 3.86
1133 1221 1.152756 GGTTTGGGTGCTGTGAGGT 60.153 57.895 0.00 0.00 0.00 3.85
1135 1223 0.465460 GTTTGGGTGCTGTGAGGTGA 60.465 55.000 0.00 0.00 0.00 4.02
1203 1291 3.681897 GGATCCTGTATATTGCTGCTTCG 59.318 47.826 3.84 0.00 0.00 3.79
1236 1324 3.969976 TCCTGATTCACCTAGCTGCTATT 59.030 43.478 10.23 0.00 0.00 1.73
1265 1354 9.940166 TTCTTTCTTTCTTGTTTCGTAAATACC 57.060 29.630 0.00 0.00 0.00 2.73
1285 1374 5.053978 ACCTTCAAACCATGATCCTATCC 57.946 43.478 0.00 0.00 38.03 2.59
1287 1376 5.068636 CCTTCAAACCATGATCCTATCCAG 58.931 45.833 0.00 0.00 38.03 3.86
1290 1379 6.823286 TCAAACCATGATCCTATCCAGTAA 57.177 37.500 0.00 0.00 31.50 2.24
1291 1380 7.206789 TCAAACCATGATCCTATCCAGTAAA 57.793 36.000 0.00 0.00 31.50 2.01
1292 1381 7.815383 TCAAACCATGATCCTATCCAGTAAAT 58.185 34.615 0.00 0.00 31.50 1.40
1293 1382 8.944138 TCAAACCATGATCCTATCCAGTAAATA 58.056 33.333 0.00 0.00 31.50 1.40
1316 1424 8.930846 ATATTTTGAGAAATATCTGGTGGGAG 57.069 34.615 0.00 0.00 42.13 4.30
1357 1466 3.376546 CCTCCAGCTGCTATGTTTCTTTC 59.623 47.826 8.66 0.00 0.00 2.62
1358 1467 4.260170 CTCCAGCTGCTATGTTTCTTTCT 58.740 43.478 8.66 0.00 0.00 2.52
1365 1474 6.072230 AGCTGCTATGTTTCTTTCTTTCTTCC 60.072 38.462 0.00 0.00 0.00 3.46
1369 1478 8.137437 TGCTATGTTTCTTTCTTTCTTCCTTTG 58.863 33.333 0.00 0.00 0.00 2.77
1370 1479 7.115520 GCTATGTTTCTTTCTTTCTTCCTTTGC 59.884 37.037 0.00 0.00 0.00 3.68
1377 1486 7.707104 TCTTTCTTTCTTCCTTTGCTGTTAAG 58.293 34.615 0.00 0.00 0.00 1.85
1387 1496 3.719173 TTGCTGTTAAGGAAAAACGGG 57.281 42.857 0.00 0.00 34.43 5.28
1388 1497 2.933573 TGCTGTTAAGGAAAAACGGGA 58.066 42.857 0.00 0.00 34.43 5.14
1405 1514 0.533755 GGAATGGTGATCCCTCTGCG 60.534 60.000 0.00 0.00 0.00 5.18
1426 1535 5.144359 GCGTCGTTAATGAACTGTGAAAAT 58.856 37.500 0.00 0.00 33.01 1.82
1428 1537 6.183359 GCGTCGTTAATGAACTGTGAAAATTC 60.183 38.462 0.00 0.00 33.01 2.17
1489 1833 8.233692 GTGACAAGTTTGTTACATTTTGTTCA 57.766 30.769 13.14 7.53 44.30 3.18
1492 1836 9.301153 GACAAGTTTGTTACATTTTGTTCATCT 57.699 29.630 9.70 0.00 42.43 2.90
1606 1950 2.778299 CTGTTCGGGATCCAAAACAGA 58.222 47.619 33.96 15.78 43.57 3.41
1703 2073 1.077716 GCCCTGGGCGTGATTAACT 60.078 57.895 24.16 0.00 39.62 2.24
2010 2394 6.016943 CGTTTGACCCTACAAATTTCAGGTTA 60.017 38.462 12.36 1.74 40.91 2.85
2030 2414 5.918576 GGTTAACAATGTAAAGGCACTGAAC 59.081 40.000 8.10 0.00 40.86 3.18
2036 2420 4.286297 TGTAAAGGCACTGAACTGCTAT 57.714 40.909 0.00 0.00 40.86 2.97
2104 2488 2.000447 GATGCTTGAACCGTGAGTACC 59.000 52.381 0.00 0.00 0.00 3.34
2132 2517 7.147444 TGGTTACTTGTAGGGGGAATATGTTAG 60.147 40.741 0.00 0.00 0.00 2.34
2178 2581 3.744660 AGCTTTTCTTGTGTCTCGGATT 58.255 40.909 0.00 0.00 0.00 3.01
2179 2582 3.499918 AGCTTTTCTTGTGTCTCGGATTG 59.500 43.478 0.00 0.00 0.00 2.67
2182 2585 4.811555 TTTCTTGTGTCTCGGATTGTTG 57.188 40.909 0.00 0.00 0.00 3.33
2233 2639 4.404073 ACAAACCCAATAGCAACTTTGTCA 59.596 37.500 0.00 0.00 28.06 3.58
2357 2764 7.959175 AGCCTGTTGCATTAATTCATATTCAT 58.041 30.769 0.00 0.00 44.83 2.57
2393 2800 4.525411 ACGGTCGTTACTTTGAAGTTTG 57.475 40.909 1.20 0.00 40.37 2.93
2591 2998 3.077359 AGGCACAGCAATTCTTGTACTC 58.923 45.455 0.00 0.00 0.00 2.59
2692 3104 6.405397 GCTGTTATTTTCCCCGTGAATAACAT 60.405 38.462 16.55 0.00 46.56 2.71
2696 3108 9.857957 GTTATTTTCCCCGTGAATAACATTTTA 57.142 29.630 11.31 0.00 41.99 1.52
2699 3111 9.952030 ATTTTCCCCGTGAATAACATTTTATTT 57.048 25.926 0.00 0.00 37.92 1.40
2700 3112 8.764524 TTTCCCCGTGAATAACATTTTATTTG 57.235 30.769 0.00 0.00 37.92 2.32
2701 3113 7.704578 TCCCCGTGAATAACATTTTATTTGA 57.295 32.000 0.00 0.00 37.92 2.69
2702 3114 8.123639 TCCCCGTGAATAACATTTTATTTGAA 57.876 30.769 0.00 0.00 37.92 2.69
2703 3115 8.030106 TCCCCGTGAATAACATTTTATTTGAAC 58.970 33.333 0.00 0.00 37.92 3.18
2704 3116 8.032451 CCCCGTGAATAACATTTTATTTGAACT 58.968 33.333 0.00 0.00 37.92 3.01
2715 3127 9.461312 ACATTTTATTTGAACTAGCTATGGACA 57.539 29.630 0.00 0.00 0.00 4.02
2716 3128 9.941664 CATTTTATTTGAACTAGCTATGGACAG 57.058 33.333 0.00 0.00 0.00 3.51
2717 3129 8.506168 TTTTATTTGAACTAGCTATGGACAGG 57.494 34.615 0.00 0.00 0.00 4.00
2718 3130 4.487714 TTTGAACTAGCTATGGACAGGG 57.512 45.455 0.00 0.00 0.00 4.45
2719 3131 2.398588 TGAACTAGCTATGGACAGGGG 58.601 52.381 0.00 0.00 0.00 4.79
2720 3132 2.292918 TGAACTAGCTATGGACAGGGGT 60.293 50.000 0.00 0.00 0.00 4.95
2721 3133 1.794714 ACTAGCTATGGACAGGGGTG 58.205 55.000 0.00 0.00 0.00 4.61
2722 3134 0.394565 CTAGCTATGGACAGGGGTGC 59.605 60.000 0.00 0.00 35.66 5.01
2723 3135 1.399744 TAGCTATGGACAGGGGTGCG 61.400 60.000 0.00 0.00 38.35 5.34
2724 3136 3.031417 GCTATGGACAGGGGTGCGT 62.031 63.158 0.00 0.00 38.35 5.24
2725 3137 1.153369 CTATGGACAGGGGTGCGTG 60.153 63.158 0.00 0.00 38.35 5.34
2726 3138 2.593468 CTATGGACAGGGGTGCGTGG 62.593 65.000 0.00 0.00 38.35 4.94
2728 3140 3.948719 GGACAGGGGTGCGTGGAA 61.949 66.667 0.00 0.00 0.00 3.53
2729 3141 2.358737 GACAGGGGTGCGTGGAAG 60.359 66.667 0.00 0.00 0.00 3.46
2730 3142 4.643387 ACAGGGGTGCGTGGAAGC 62.643 66.667 0.00 0.00 37.71 3.86
2731 3143 4.335647 CAGGGGTGCGTGGAAGCT 62.336 66.667 0.00 0.00 38.13 3.74
2732 3144 3.570212 AGGGGTGCGTGGAAGCTT 61.570 61.111 0.00 0.00 38.13 3.74
2733 3145 3.365265 GGGGTGCGTGGAAGCTTG 61.365 66.667 2.10 0.00 38.13 4.01
2734 3146 4.043200 GGGTGCGTGGAAGCTTGC 62.043 66.667 11.58 11.58 38.13 4.01
2735 3147 2.980233 GGTGCGTGGAAGCTTGCT 60.980 61.111 19.34 0.00 38.13 3.91
2736 3148 1.671054 GGTGCGTGGAAGCTTGCTA 60.671 57.895 19.34 2.82 38.13 3.49
2737 3149 1.026718 GGTGCGTGGAAGCTTGCTAT 61.027 55.000 19.34 0.00 38.13 2.97
2738 3150 0.375106 GTGCGTGGAAGCTTGCTATC 59.625 55.000 19.34 8.59 38.13 2.08
2739 3151 0.744414 TGCGTGGAAGCTTGCTATCC 60.744 55.000 19.34 6.99 38.13 2.59
2740 3152 0.744414 GCGTGGAAGCTTGCTATCCA 60.744 55.000 19.34 9.80 40.84 3.41
2741 3153 1.959042 CGTGGAAGCTTGCTATCCAT 58.041 50.000 19.34 0.00 44.55 3.41
2742 3154 1.600957 CGTGGAAGCTTGCTATCCATG 59.399 52.381 19.34 20.51 44.55 3.66
2743 3155 2.648059 GTGGAAGCTTGCTATCCATGT 58.352 47.619 19.34 0.00 44.55 3.21
2744 3156 2.357009 GTGGAAGCTTGCTATCCATGTG 59.643 50.000 19.34 0.00 44.55 3.21
2745 3157 1.336125 GGAAGCTTGCTATCCATGTGC 59.664 52.381 11.19 0.00 33.30 4.57
2746 3158 1.336125 GAAGCTTGCTATCCATGTGCC 59.664 52.381 2.10 0.00 0.00 5.01
2747 3159 0.256752 AGCTTGCTATCCATGTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
2748 3160 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
2749 3161 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
2750 3162 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
2751 3163 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
2752 3164 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
2753 3165 0.471191 CTATCCATGTGCCAGAGCCA 59.529 55.000 0.00 0.00 38.69 4.75
2754 3166 1.073444 CTATCCATGTGCCAGAGCCAT 59.927 52.381 0.00 0.00 38.69 4.40
2755 3167 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
2756 3168 1.077285 CCATGTGCCAGAGCCATGA 60.077 57.895 14.22 0.00 44.14 3.07
2757 3169 1.101635 CCATGTGCCAGAGCCATGAG 61.102 60.000 14.22 5.17 44.14 2.90
2758 3170 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
2759 3171 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.000 0.00 0.00 38.69 3.01
2760 3172 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
2770 3182 2.680312 CCATGAGTTGGTCACGAGAT 57.320 50.000 0.00 0.00 40.99 2.75
2771 3183 2.544685 CCATGAGTTGGTCACGAGATC 58.455 52.381 0.00 0.00 40.99 2.75
2772 3184 2.167281 CCATGAGTTGGTCACGAGATCT 59.833 50.000 0.00 0.00 40.99 2.75
2773 3185 3.368843 CCATGAGTTGGTCACGAGATCTT 60.369 47.826 0.00 0.00 40.99 2.40
2774 3186 4.142160 CCATGAGTTGGTCACGAGATCTTA 60.142 45.833 0.00 0.00 40.99 2.10
2775 3187 5.452496 CCATGAGTTGGTCACGAGATCTTAT 60.452 44.000 0.00 0.00 40.99 1.73
2776 3188 4.998788 TGAGTTGGTCACGAGATCTTATG 58.001 43.478 0.00 0.00 0.00 1.90
2777 3189 4.142160 TGAGTTGGTCACGAGATCTTATGG 60.142 45.833 0.00 0.00 0.00 2.74
2778 3190 3.133003 AGTTGGTCACGAGATCTTATGGG 59.867 47.826 0.00 0.00 0.00 4.00
2779 3191 2.747177 TGGTCACGAGATCTTATGGGT 58.253 47.619 0.00 0.00 0.00 4.51
2780 3192 3.104512 TGGTCACGAGATCTTATGGGTT 58.895 45.455 0.00 0.00 0.00 4.11
2781 3193 3.517901 TGGTCACGAGATCTTATGGGTTT 59.482 43.478 0.00 0.00 0.00 3.27
2782 3194 4.120589 GGTCACGAGATCTTATGGGTTTC 58.879 47.826 0.00 0.00 0.00 2.78
2783 3195 4.382685 GGTCACGAGATCTTATGGGTTTCA 60.383 45.833 0.00 0.00 0.00 2.69
2784 3196 4.567159 GTCACGAGATCTTATGGGTTTCAC 59.433 45.833 0.00 0.00 0.00 3.18
2785 3197 3.871594 CACGAGATCTTATGGGTTTCACC 59.128 47.826 0.00 0.00 37.60 4.02
2786 3198 3.775316 ACGAGATCTTATGGGTTTCACCT 59.225 43.478 0.00 0.00 38.64 4.00
2787 3199 4.141914 ACGAGATCTTATGGGTTTCACCTC 60.142 45.833 0.00 0.00 38.64 3.85
2788 3200 4.100189 CGAGATCTTATGGGTTTCACCTCT 59.900 45.833 0.00 0.00 38.64 3.69
2789 3201 5.302059 CGAGATCTTATGGGTTTCACCTCTA 59.698 44.000 0.00 0.00 38.64 2.43
2790 3202 6.515862 CGAGATCTTATGGGTTTCACCTCTAG 60.516 46.154 0.00 0.00 38.64 2.43
2791 3203 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
2792 3204 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
2793 3205 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
2794 3206 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
2795 3207 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
2796 3208 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
2797 3209 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
2798 3210 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
2799 3211 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
2800 3212 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
2801 3213 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
2802 3214 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
2803 3215 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
2804 3216 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
2805 3217 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
2806 3218 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
2807 3219 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
2808 3220 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
2819 3231 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
2820 3232 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
2821 3233 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
2822 3234 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
2823 3235 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
2824 3236 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
2825 3237 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
2826 3238 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
2827 3239 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
2828 3240 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
2829 3241 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
2925 3337 6.072175 CCACTATAGAGATGTGCTAGAGGTTC 60.072 46.154 6.78 0.00 32.83 3.62
2975 3472 8.502387 GTCATAACATATCTGCAATTCTTCCTC 58.498 37.037 0.00 0.00 0.00 3.71
2976 3473 8.212995 TCATAACATATCTGCAATTCTTCCTCA 58.787 33.333 0.00 0.00 0.00 3.86
2977 3474 8.843262 CATAACATATCTGCAATTCTTCCTCAA 58.157 33.333 0.00 0.00 0.00 3.02
2978 3475 7.707624 AACATATCTGCAATTCTTCCTCAAA 57.292 32.000 0.00 0.00 0.00 2.69
2979 3476 7.707624 ACATATCTGCAATTCTTCCTCAAAA 57.292 32.000 0.00 0.00 0.00 2.44
3397 3894 3.444805 GCGCCACGTCTCCTCTCT 61.445 66.667 0.00 0.00 0.00 3.10
3731 4228 4.899352 AATTCAGGTGCTCTACTCTTGT 57.101 40.909 0.00 0.00 0.00 3.16
4119 4625 7.985184 GGAGTGCCAATATCGGTATAATTATCA 59.015 37.037 0.00 0.00 0.00 2.15
4281 4787 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
4306 4812 5.669164 TGTTTGGGACTAAAAGCTTTGTT 57.331 34.783 13.54 0.00 0.00 2.83
4347 4853 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
4348 4854 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
4349 4855 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
4350 4856 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
4351 4857 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
4352 4858 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
4353 4859 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
4354 4860 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
4355 4861 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
4356 4862 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
4357 4863 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
4358 4864 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
4359 4865 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
4360 4866 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
4361 4867 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
4362 4868 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
4363 4869 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
4364 4870 6.533723 TGTTGTTGTTGTTGTTGTTGTTGTTA 59.466 30.769 0.00 0.00 0.00 2.41
4365 4871 7.224753 TGTTGTTGTTGTTGTTGTTGTTGTTAT 59.775 29.630 0.00 0.00 0.00 1.89
4366 4872 7.715265 TGTTGTTGTTGTTGTTGTTGTTATT 57.285 28.000 0.00 0.00 0.00 1.40
4367 4873 8.812147 TGTTGTTGTTGTTGTTGTTGTTATTA 57.188 26.923 0.00 0.00 0.00 0.98
4368 4874 9.424319 TGTTGTTGTTGTTGTTGTTGTTATTAT 57.576 25.926 0.00 0.00 0.00 1.28
4704 5219 0.034896 AACCCTACAGTGAAGCACGG 59.965 55.000 0.00 0.00 39.64 4.94
5037 5552 6.040391 ACCATGGTGTTATACATACAATTGCC 59.960 38.462 18.99 0.00 0.00 4.52
5302 5817 6.042552 TCTCATATGAATTTCCTCCTGACTCC 59.957 42.308 6.90 0.00 0.00 3.85
5336 5851 3.389925 AATGACAGGCAACAAATGGTG 57.610 42.857 0.00 0.00 41.41 4.17
5346 5861 1.408969 ACAAATGGTGGCGGTTCTTT 58.591 45.000 0.00 0.00 0.00 2.52
5420 5935 0.535780 CTGCCAAGACACCTGCTTCA 60.536 55.000 0.00 0.00 0.00 3.02
5623 6138 1.085091 GATGACCAGCTTGCACTGAG 58.915 55.000 5.92 0.00 40.25 3.35
6065 6583 0.841289 TGAGGTGGTTCCGAAAAGGT 59.159 50.000 0.00 0.00 41.99 3.50
6209 6727 2.588034 GCTATCGTCGGTTGCCCC 60.588 66.667 0.02 0.00 0.00 5.80
6314 6832 3.000773 GCGTTTCAGTCAAAAACTTGCTG 60.001 43.478 0.00 0.00 35.45 4.41
6332 6851 4.897025 GCTGAAGCAAGAGCAGATTTAT 57.103 40.909 0.00 0.00 45.49 1.40
6550 7073 1.379576 ATCTGGAAAGCAGCTGGCC 60.380 57.895 17.12 0.00 46.50 5.36
6571 7094 2.431454 GCCTGAAGAGCAGTAAAAGCT 58.569 47.619 0.00 0.00 46.82 3.74
6761 7291 3.895232 TGAGGAAGTACCATCTGCTTC 57.105 47.619 0.00 0.00 40.08 3.86
6768 7298 5.009811 GGAAGTACCATCTGCTTCGTAGTAT 59.990 44.000 0.00 0.00 41.35 2.12
6896 7427 3.193479 AGCTTAAATACCAACTGCCTTGC 59.807 43.478 0.00 0.00 0.00 4.01
6927 7458 3.178865 TCCCTCCGGTCATTTTTACTCT 58.821 45.455 0.00 0.00 0.00 3.24
6978 7510 6.750039 ACTTCGTAAAGTTTGACCATGTTTTG 59.250 34.615 0.00 0.00 43.28 2.44
6979 7511 6.197364 TCGTAAAGTTTGACCATGTTTTGT 57.803 33.333 0.00 0.00 0.00 2.83
7031 7564 7.544566 ACAACTTTAGTATGGTAGACGTTGATG 59.455 37.037 0.00 0.00 34.82 3.07
7032 7565 6.040878 ACTTTAGTATGGTAGACGTTGATGC 58.959 40.000 0.00 0.00 0.00 3.91
7165 7864 6.183360 GGCGTGTACATGGTAATAAATGTGAA 60.183 38.462 16.68 0.00 37.57 3.18
7188 7887 6.428385 AGATAAATTTGAAACGGAGCTCAG 57.572 37.500 17.19 14.86 0.00 3.35
7192 7891 0.944386 TTGAAACGGAGCTCAGTTGC 59.056 50.000 29.03 27.39 34.62 4.17
7199 7898 1.538047 GGAGCTCAGTTGCCAATGAA 58.462 50.000 17.19 0.00 0.00 2.57
7200 7899 1.888512 GGAGCTCAGTTGCCAATGAAA 59.111 47.619 17.19 0.00 0.00 2.69
7223 7923 9.248291 GAAAACATGATGAAGCTTTTGAAGTTA 57.752 29.630 0.00 0.00 0.00 2.24
7224 7924 9.768662 AAAACATGATGAAGCTTTTGAAGTTAT 57.231 25.926 0.00 0.00 0.00 1.89
7230 7930 9.357652 TGATGAAGCTTTTGAAGTTATATTTGC 57.642 29.630 0.00 0.00 0.00 3.68
7231 7931 9.578439 GATGAAGCTTTTGAAGTTATATTTGCT 57.422 29.630 0.00 0.00 0.00 3.91
7234 7934 9.508567 GAAGCTTTTGAAGTTATATTTGCTAGG 57.491 33.333 0.00 0.00 0.00 3.02
7235 7935 7.484140 AGCTTTTGAAGTTATATTTGCTAGGC 58.516 34.615 0.00 0.00 0.00 3.93
7236 7936 7.340487 AGCTTTTGAAGTTATATTTGCTAGGCT 59.660 33.333 0.00 0.00 0.00 4.58
7237 7937 7.976175 GCTTTTGAAGTTATATTTGCTAGGCTT 59.024 33.333 0.00 0.00 0.00 4.35
7238 7938 9.294030 CTTTTGAAGTTATATTTGCTAGGCTTG 57.706 33.333 0.00 0.00 0.00 4.01
7239 7939 6.377327 TGAAGTTATATTTGCTAGGCTTGC 57.623 37.500 14.14 14.14 0.00 4.01
7280 8009 2.428530 GCAAATCCTGAAACTGGGATCC 59.571 50.000 1.92 1.92 41.00 3.36
7281 8010 3.700538 CAAATCCTGAAACTGGGATCCA 58.299 45.455 15.23 0.00 41.00 3.41
7297 8026 3.378427 GGATCCAGGTGTAAATGACAAGC 59.622 47.826 6.95 0.00 40.66 4.01
7299 8028 2.151202 CCAGGTGTAAATGACAAGCGT 58.849 47.619 0.00 0.00 40.66 5.07
7300 8029 3.007074 TCCAGGTGTAAATGACAAGCGTA 59.993 43.478 0.00 0.00 40.66 4.42
7301 8030 3.124636 CCAGGTGTAAATGACAAGCGTAC 59.875 47.826 0.00 0.00 40.66 3.67
7372 8105 7.364970 TCACACTTCTTTGATTGTCATGATTG 58.635 34.615 0.00 0.00 0.00 2.67
7440 8178 2.105930 GCGAGGCAGAGGCAGTAG 59.894 66.667 0.00 0.00 43.71 2.57
7441 8179 2.105930 CGAGGCAGAGGCAGTAGC 59.894 66.667 0.00 0.00 43.71 3.58
7442 8180 2.714991 CGAGGCAGAGGCAGTAGCA 61.715 63.158 0.00 0.00 44.61 3.49
7443 8181 1.599047 GAGGCAGAGGCAGTAGCAA 59.401 57.895 0.00 0.00 44.61 3.91
7444 8182 0.179936 GAGGCAGAGGCAGTAGCAAT 59.820 55.000 0.00 0.00 44.61 3.56
7445 8183 0.107312 AGGCAGAGGCAGTAGCAATG 60.107 55.000 0.00 0.00 44.61 2.82
7446 8184 1.722636 GGCAGAGGCAGTAGCAATGC 61.723 60.000 0.00 0.00 44.61 3.56
7447 8185 0.747283 GCAGAGGCAGTAGCAATGCT 60.747 55.000 13.92 13.92 44.61 3.79
7448 8186 1.297664 CAGAGGCAGTAGCAATGCTC 58.702 55.000 12.53 3.64 44.61 4.26
7449 8187 0.179936 AGAGGCAGTAGCAATGCTCC 59.820 55.000 12.53 6.82 44.61 4.70
7450 8188 1.153289 AGGCAGTAGCAATGCTCCG 60.153 57.895 12.53 2.23 44.61 4.63
7451 8189 2.182842 GGCAGTAGCAATGCTCCGG 61.183 63.158 12.53 1.38 44.61 5.14
7452 8190 2.828128 GCAGTAGCAATGCTCCGGC 61.828 63.158 12.53 9.48 40.44 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.667415 CGTTGATGTAGTCGTACGTCTTCA 60.667 45.833 19.61 19.79 43.23 3.02
1 2 3.777680 CGTTGATGTAGTCGTACGTCTTC 59.222 47.826 19.61 15.02 43.23 2.87
2 3 3.425359 CCGTTGATGTAGTCGTACGTCTT 60.425 47.826 19.61 2.66 43.23 3.01
3 4 2.094894 CCGTTGATGTAGTCGTACGTCT 59.905 50.000 18.54 18.54 43.23 4.18
4 5 2.434761 CCGTTGATGTAGTCGTACGTC 58.565 52.381 16.05 10.06 43.16 4.34
5 6 1.466360 GCCGTTGATGTAGTCGTACGT 60.466 52.381 16.05 0.00 36.40 3.57
6 7 1.186030 GCCGTTGATGTAGTCGTACG 58.814 55.000 9.53 9.53 37.29 3.67
7 8 1.186030 CGCCGTTGATGTAGTCGTAC 58.814 55.000 0.00 0.00 0.00 3.67
8 9 0.804364 ACGCCGTTGATGTAGTCGTA 59.196 50.000 0.00 0.00 0.00 3.43
9 10 0.038892 AACGCCGTTGATGTAGTCGT 60.039 50.000 0.00 0.00 0.00 4.34
10 11 0.365523 CAACGCCGTTGATGTAGTCG 59.634 55.000 24.84 0.00 45.28 4.18
11 12 1.126113 CACAACGCCGTTGATGTAGTC 59.874 52.381 34.07 0.00 45.28 2.59
12 13 1.144969 CACAACGCCGTTGATGTAGT 58.855 50.000 34.07 9.81 45.28 2.73
13 14 0.179225 GCACAACGCCGTTGATGTAG 60.179 55.000 34.07 18.38 45.28 2.74
14 15 0.601576 AGCACAACGCCGTTGATGTA 60.602 50.000 34.07 0.00 45.28 2.29
15 16 0.601576 TAGCACAACGCCGTTGATGT 60.602 50.000 34.07 19.40 45.28 3.06
16 17 0.515127 TTAGCACAACGCCGTTGATG 59.485 50.000 34.07 26.17 45.28 3.07
17 18 0.515564 GTTAGCACAACGCCGTTGAT 59.484 50.000 34.07 21.01 45.28 2.57
18 19 1.823260 CGTTAGCACAACGCCGTTGA 61.823 55.000 34.07 10.96 45.28 3.18
20 21 2.932905 CGTTAGCACAACGCCGTT 59.067 55.556 10.14 0.00 44.04 4.44
42 43 1.226603 CCCTCGTAGACCGAAAGCG 60.227 63.158 0.00 0.00 46.75 4.68
43 44 1.098050 TACCCTCGTAGACCGAAAGC 58.902 55.000 0.00 0.00 46.75 3.51
44 45 1.063174 CGTACCCTCGTAGACCGAAAG 59.937 57.143 0.00 0.00 46.75 2.62
45 46 1.086696 CGTACCCTCGTAGACCGAAA 58.913 55.000 0.00 0.00 46.75 3.46
46 47 0.036388 ACGTACCCTCGTAGACCGAA 60.036 55.000 0.00 0.00 46.75 4.30
47 48 0.740868 CACGTACCCTCGTAGACCGA 60.741 60.000 0.00 0.00 45.00 4.69
48 49 1.709147 CCACGTACCCTCGTAGACCG 61.709 65.000 0.00 0.00 42.27 4.79
49 50 0.392998 TCCACGTACCCTCGTAGACC 60.393 60.000 0.00 0.00 42.27 3.85
50 51 0.729690 GTCCACGTACCCTCGTAGAC 59.270 60.000 0.00 2.79 42.50 2.59
51 52 0.324614 TGTCCACGTACCCTCGTAGA 59.675 55.000 0.00 0.00 42.27 2.59
52 53 1.135575 GTTGTCCACGTACCCTCGTAG 60.136 57.143 0.00 0.00 42.27 3.51
53 54 0.881118 GTTGTCCACGTACCCTCGTA 59.119 55.000 0.00 0.00 42.27 3.43
54 55 1.108727 TGTTGTCCACGTACCCTCGT 61.109 55.000 0.00 0.00 45.10 4.18
55 56 0.665369 GTGTTGTCCACGTACCCTCG 60.665 60.000 0.00 0.00 33.61 4.63
56 57 3.206090 GTGTTGTCCACGTACCCTC 57.794 57.895 0.00 0.00 33.61 4.30
61 62 4.748514 AGGGGAGAGTGTTGTCCACGTA 62.749 54.545 0.00 0.00 44.77 3.57
63 64 1.472662 AGGGGAGAGTGTTGTCCACG 61.473 60.000 0.00 0.00 44.77 4.94
64 65 0.321996 GAGGGGAGAGTGTTGTCCAC 59.678 60.000 0.00 0.00 40.47 4.02
65 66 0.191064 AGAGGGGAGAGTGTTGTCCA 59.809 55.000 0.00 0.00 38.50 4.02
66 67 0.899019 GAGAGGGGAGAGTGTTGTCC 59.101 60.000 0.00 0.00 36.03 4.02
67 68 0.528470 CGAGAGGGGAGAGTGTTGTC 59.472 60.000 0.00 0.00 0.00 3.18
68 69 0.178958 ACGAGAGGGGAGAGTGTTGT 60.179 55.000 0.00 0.00 0.00 3.32
69 70 0.969894 AACGAGAGGGGAGAGTGTTG 59.030 55.000 0.00 0.00 0.00 3.33
70 71 0.969894 CAACGAGAGGGGAGAGTGTT 59.030 55.000 0.00 0.00 0.00 3.32
71 72 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
72 73 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
73 74 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
74 75 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
75 76 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
76 77 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
77 78 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
78 79 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
79 80 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
80 81 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
81 82 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
82 83 1.206849 TGGTGATGCATAGCAACGAGA 59.793 47.619 0.00 0.00 43.62 4.04
83 84 1.655484 TGGTGATGCATAGCAACGAG 58.345 50.000 0.00 0.00 43.62 4.18
84 85 1.941975 CATGGTGATGCATAGCAACGA 59.058 47.619 0.00 0.00 43.62 3.85
85 86 1.941975 TCATGGTGATGCATAGCAACG 59.058 47.619 0.00 1.35 43.62 4.10
86 87 3.057736 GGATCATGGTGATGCATAGCAAC 60.058 47.826 0.00 0.00 43.55 4.17
87 88 3.151554 GGATCATGGTGATGCATAGCAA 58.848 45.455 0.00 0.00 43.55 3.91
88 89 2.374170 AGGATCATGGTGATGCATAGCA 59.626 45.455 12.83 4.86 46.03 3.49
89 90 2.747989 CAGGATCATGGTGATGCATAGC 59.252 50.000 12.83 0.00 46.03 2.97
90 91 2.747989 GCAGGATCATGGTGATGCATAG 59.252 50.000 9.76 4.79 46.03 2.23
91 92 2.786777 GCAGGATCATGGTGATGCATA 58.213 47.619 9.76 0.00 46.03 3.14
92 93 1.617322 GCAGGATCATGGTGATGCAT 58.383 50.000 9.76 0.00 46.03 3.96
93 94 0.816421 CGCAGGATCATGGTGATGCA 60.816 55.000 9.76 0.00 46.03 3.96
94 95 0.816825 ACGCAGGATCATGGTGATGC 60.817 55.000 9.76 3.59 44.29 3.91
95 96 0.942252 CACGCAGGATCATGGTGATG 59.058 55.000 18.31 0.00 37.20 3.07
96 97 0.543277 ACACGCAGGATCATGGTGAT 59.457 50.000 25.47 13.21 40.34 3.06
97 98 0.391528 CACACGCAGGATCATGGTGA 60.392 55.000 25.47 0.00 33.08 4.02
98 99 1.985447 GCACACGCAGGATCATGGTG 61.985 60.000 20.27 20.27 38.36 4.17
99 100 1.746615 GCACACGCAGGATCATGGT 60.747 57.895 9.76 2.66 38.36 3.55
100 101 2.816360 CGCACACGCAGGATCATGG 61.816 63.158 9.76 2.01 38.40 3.66
101 102 0.805711 TACGCACACGCAGGATCATG 60.806 55.000 2.22 2.22 45.53 3.07
102 103 0.528466 CTACGCACACGCAGGATCAT 60.528 55.000 0.00 0.00 45.53 2.45
103 104 1.153842 CTACGCACACGCAGGATCA 60.154 57.895 0.00 0.00 45.53 2.92
104 105 3.693245 CTACGCACACGCAGGATC 58.307 61.111 0.00 0.00 45.53 3.36
108 109 0.796312 AAAATCCTACGCACACGCAG 59.204 50.000 0.00 0.00 45.53 5.18
109 110 1.231221 AAAAATCCTACGCACACGCA 58.769 45.000 0.00 0.00 45.53 5.24
127 128 6.956202 TGGGGAACGTAGTAATTTCAAAAA 57.044 33.333 0.00 0.00 45.00 1.94
128 129 6.320672 TGTTGGGGAACGTAGTAATTTCAAAA 59.679 34.615 0.00 0.00 45.00 2.44
129 130 5.826737 TGTTGGGGAACGTAGTAATTTCAAA 59.173 36.000 0.00 0.00 45.00 2.69
130 131 5.374921 TGTTGGGGAACGTAGTAATTTCAA 58.625 37.500 0.00 0.00 45.00 2.69
131 132 4.970711 TGTTGGGGAACGTAGTAATTTCA 58.029 39.130 0.00 0.00 45.00 2.69
132 133 5.644636 TCATGTTGGGGAACGTAGTAATTTC 59.355 40.000 0.00 0.00 45.00 2.17
133 134 5.562635 TCATGTTGGGGAACGTAGTAATTT 58.437 37.500 0.00 0.00 45.00 1.82
134 135 5.168647 TCATGTTGGGGAACGTAGTAATT 57.831 39.130 0.00 0.00 45.00 1.40
135 136 4.829872 TCATGTTGGGGAACGTAGTAAT 57.170 40.909 0.00 0.00 45.00 1.89
136 137 4.620589 TTCATGTTGGGGAACGTAGTAA 57.379 40.909 0.00 0.00 45.00 2.24
137 138 4.829872 ATTCATGTTGGGGAACGTAGTA 57.170 40.909 0.00 0.00 45.00 1.82
139 140 3.560068 GCTATTCATGTTGGGGAACGTAG 59.440 47.826 0.00 0.00 0.00 3.51
140 141 3.199071 AGCTATTCATGTTGGGGAACGTA 59.801 43.478 0.00 0.00 0.00 3.57
141 142 2.026262 AGCTATTCATGTTGGGGAACGT 60.026 45.455 0.00 0.00 0.00 3.99
142 143 2.643551 AGCTATTCATGTTGGGGAACG 58.356 47.619 0.00 0.00 0.00 3.95
143 144 3.565902 GCTAGCTATTCATGTTGGGGAAC 59.434 47.826 7.70 0.00 0.00 3.62
144 145 3.201930 TGCTAGCTATTCATGTTGGGGAA 59.798 43.478 17.23 0.00 0.00 3.97
145 146 2.777114 TGCTAGCTATTCATGTTGGGGA 59.223 45.455 17.23 0.00 0.00 4.81
146 147 2.880890 GTGCTAGCTATTCATGTTGGGG 59.119 50.000 17.23 0.00 0.00 4.96
147 148 3.813443 AGTGCTAGCTATTCATGTTGGG 58.187 45.455 17.23 0.00 0.00 4.12
171 172 1.377333 GGGAAGGGGAAGTTCAGCG 60.377 63.158 5.01 0.00 0.00 5.18
176 177 1.373536 GAGAAGGGGAAGGGGAAGTT 58.626 55.000 0.00 0.00 0.00 2.66
215 216 1.077429 CCAGAAACCCTAGCCAGCC 60.077 63.158 0.00 0.00 0.00 4.85
237 238 2.348888 ACACTTACTCCCTCGCCGG 61.349 63.158 0.00 0.00 0.00 6.13
249 250 1.003118 GTCCACATCTGGCCACACTTA 59.997 52.381 0.00 0.00 37.49 2.24
250 251 0.250901 GTCCACATCTGGCCACACTT 60.251 55.000 0.00 0.00 37.49 3.16
253 254 2.347114 CGTCCACATCTGGCCACA 59.653 61.111 0.00 0.00 37.49 4.17
257 258 1.097547 CATTCCCGTCCACATCTGGC 61.098 60.000 0.00 0.00 37.49 4.85
259 260 0.541392 TCCATTCCCGTCCACATCTG 59.459 55.000 0.00 0.00 0.00 2.90
271 272 1.410224 GGGGTCATCCACTTCCATTCC 60.410 57.143 0.00 0.00 37.22 3.01
280 281 2.073101 GGGGAGAGGGGTCATCCAC 61.073 68.421 0.00 0.00 37.22 4.02
300 301 1.939334 TTTTTAATGCAAGCGCGCGC 61.939 50.000 45.10 45.10 42.97 6.86
304 309 1.648681 CGTCCTTTTTAATGCAAGCGC 59.351 47.619 0.00 0.00 39.24 5.92
331 336 0.948678 GGCAGTGAGTAAAAACGCCA 59.051 50.000 0.00 0.00 36.58 5.69
333 338 1.069227 CCTGGCAGTGAGTAAAAACGC 60.069 52.381 14.43 0.00 0.00 4.84
334 339 1.069227 GCCTGGCAGTGAGTAAAAACG 60.069 52.381 15.17 0.00 0.00 3.60
335 340 1.069227 CGCCTGGCAGTGAGTAAAAAC 60.069 52.381 20.29 0.00 0.00 2.43
340 345 2.283604 TCCGCCTGGCAGTGAGTA 60.284 61.111 20.29 0.00 34.14 2.59
341 346 4.008933 GTCCGCCTGGCAGTGAGT 62.009 66.667 20.29 0.00 34.14 3.41
360 365 0.892755 AAACGCGATCACCTACCTCA 59.107 50.000 15.93 0.00 0.00 3.86
372 377 2.787129 CTCGCTGTCATATTAAACGCGA 59.213 45.455 15.93 12.67 41.41 5.87
392 397 4.029809 GGCCACCCAACTACCGCT 62.030 66.667 0.00 0.00 0.00 5.52
403 408 4.394712 CTCCACCTGTCGGCCACC 62.395 72.222 2.24 0.00 0.00 4.61
411 416 2.111043 CGTTGTGGCTCCACCTGT 59.889 61.111 15.76 0.00 45.63 4.00
452 457 2.660552 ACGCGGACACCAAACGAG 60.661 61.111 12.47 0.00 0.00 4.18
480 485 4.724074 TTCATGCCTAAATTTGAGCCTG 57.276 40.909 0.00 7.02 0.00 4.85
513 525 4.084888 CCAAACCGCGTCCGCTTC 62.085 66.667 4.92 0.00 39.32 3.86
525 537 2.126502 CAATGCGCGGACCCAAAC 60.127 61.111 8.83 0.00 0.00 2.93
537 549 1.153958 GAAAGCGTCAGCCCAATGC 60.154 57.895 0.00 0.00 46.67 3.56
539 551 3.578456 CGAAAGCGTCAGCCCAAT 58.422 55.556 0.00 0.00 46.67 3.16
550 562 0.110956 GGGTCGAAACGAACGAAAGC 60.111 55.000 0.14 0.00 45.33 3.51
551 563 1.210870 TGGGTCGAAACGAACGAAAG 58.789 50.000 0.14 0.00 45.33 2.62
560 572 2.178783 CGTGTTTGTTTGGGTCGAAAC 58.821 47.619 0.00 2.36 36.53 2.78
595 607 2.315386 GGAACTCCAACACCGCGAC 61.315 63.158 8.23 0.00 35.64 5.19
596 608 2.029964 GGAACTCCAACACCGCGA 59.970 61.111 8.23 0.00 35.64 5.87
612 624 2.162681 CCAAAGCCAAAGTGTAGGAGG 58.837 52.381 0.00 0.00 0.00 4.30
639 651 0.688087 GGACATCCCGGAAGAGAGGT 60.688 60.000 0.73 0.00 0.00 3.85
682 694 2.736826 GGGGAAAGAGCGGAGAGGG 61.737 68.421 0.00 0.00 0.00 4.30
690 702 2.372504 GGGATTAGTAGGGGGAAAGAGC 59.627 54.545 0.00 0.00 0.00 4.09
698 731 1.203326 GGAGAGGGGGATTAGTAGGGG 60.203 61.905 0.00 0.00 0.00 4.79
721 754 3.465403 CAGTGAGGCCGGAGAGGG 61.465 72.222 5.05 0.00 41.48 4.30
797 832 1.288127 GGGACAAGCAAGCAAGCAG 59.712 57.895 3.19 0.00 36.85 4.24
798 833 1.455402 TGGGACAAGCAAGCAAGCA 60.455 52.632 3.19 0.00 36.85 3.91
799 834 1.174712 TCTGGGACAAGCAAGCAAGC 61.175 55.000 0.00 0.00 38.70 4.01
800 835 1.471684 GATCTGGGACAAGCAAGCAAG 59.528 52.381 0.00 0.00 38.70 4.01
801 836 1.538047 GATCTGGGACAAGCAAGCAA 58.462 50.000 0.00 0.00 38.70 3.91
804 839 1.815003 GTTGGATCTGGGACAAGCAAG 59.185 52.381 0.00 0.00 38.70 4.01
847 887 4.904590 TTTGCGGTGGGTGGGTGG 62.905 66.667 0.00 0.00 0.00 4.61
848 888 3.601685 GTTTGCGGTGGGTGGGTG 61.602 66.667 0.00 0.00 0.00 4.61
849 889 4.130554 TGTTTGCGGTGGGTGGGT 62.131 61.111 0.00 0.00 0.00 4.51
850 890 3.601685 GTGTTTGCGGTGGGTGGG 61.602 66.667 0.00 0.00 0.00 4.61
1102 1190 1.303317 CAAACCTAACCGCCTGGCT 60.303 57.895 17.92 0.00 39.70 4.75
1106 1194 1.074248 CACCCAAACCTAACCGCCT 59.926 57.895 0.00 0.00 0.00 5.52
1130 1218 4.399483 TTTACTACTCCCACTCTCACCT 57.601 45.455 0.00 0.00 0.00 4.00
1158 1246 2.838736 CACCAAATCCATAGACCCGAG 58.161 52.381 0.00 0.00 0.00 4.63
1159 1247 1.134220 GCACCAAATCCATAGACCCGA 60.134 52.381 0.00 0.00 0.00 5.14
1160 1248 1.308998 GCACCAAATCCATAGACCCG 58.691 55.000 0.00 0.00 0.00 5.28
1203 1291 3.873952 GGTGAATCAGGAACATGAGCTAC 59.126 47.826 0.00 0.00 31.44 3.58
1240 1328 9.333724 AGGTATTTACGAAACAAGAAAGAAAGA 57.666 29.630 0.00 0.00 0.00 2.52
1252 1340 7.586747 TCATGGTTTGAAGGTATTTACGAAAC 58.413 34.615 0.00 0.00 0.00 2.78
1256 1345 6.542370 AGGATCATGGTTTGAAGGTATTTACG 59.458 38.462 0.00 0.00 38.03 3.18
1265 1354 5.688807 ACTGGATAGGATCATGGTTTGAAG 58.311 41.667 0.00 0.00 38.03 3.02
1290 1379 9.359653 CTCCCACCAGATATTTCTCAAAATATT 57.640 33.333 5.21 0.00 44.42 1.28
1291 1380 8.506083 ACTCCCACCAGATATTTCTCAAAATAT 58.494 33.333 3.66 3.66 46.15 1.28
1292 1381 7.872138 ACTCCCACCAGATATTTCTCAAAATA 58.128 34.615 0.00 0.00 40.64 1.40
1293 1382 6.735556 ACTCCCACCAGATATTTCTCAAAAT 58.264 36.000 0.00 0.00 38.61 1.82
1298 1405 6.487299 AAGTACTCCCACCAGATATTTCTC 57.513 41.667 0.00 0.00 0.00 2.87
1309 1417 1.422402 TGGTTCCAAAGTACTCCCACC 59.578 52.381 0.00 0.00 0.00 4.61
1312 1420 3.713826 TCATGGTTCCAAAGTACTCCC 57.286 47.619 0.00 0.00 0.00 4.30
1314 1422 4.080299 AGGGATCATGGTTCCAAAGTACTC 60.080 45.833 5.94 0.00 34.77 2.59
1316 1424 4.200092 GAGGGATCATGGTTCCAAAGTAC 58.800 47.826 5.94 0.00 34.77 2.73
1365 1474 4.048504 CCCGTTTTTCCTTAACAGCAAAG 58.951 43.478 0.00 0.00 0.00 2.77
1369 1478 3.994204 TTCCCGTTTTTCCTTAACAGC 57.006 42.857 0.00 0.00 0.00 4.40
1370 1479 4.279922 ACCATTCCCGTTTTTCCTTAACAG 59.720 41.667 0.00 0.00 0.00 3.16
1377 1486 2.165641 GGATCACCATTCCCGTTTTTCC 59.834 50.000 0.00 0.00 35.97 3.13
1387 1496 0.179000 ACGCAGAGGGATCACCATTC 59.821 55.000 0.00 0.00 43.89 2.67
1388 1497 0.179000 GACGCAGAGGGATCACCATT 59.821 55.000 0.00 0.00 43.89 3.16
1400 1509 2.729360 CACAGTTCATTAACGACGCAGA 59.271 45.455 0.00 0.00 40.73 4.26
1405 1514 6.581166 GGGAATTTTCACAGTTCATTAACGAC 59.419 38.462 0.00 0.00 40.73 4.34
1426 1535 5.073965 AGGAACACATAACAACTAAGGGGAA 59.926 40.000 0.00 0.00 0.00 3.97
1428 1537 4.918588 AGGAACACATAACAACTAAGGGG 58.081 43.478 0.00 0.00 0.00 4.79
1459 1568 8.707839 CAAAATGTAACAAACTTGTCACAAACT 58.292 29.630 2.75 0.00 42.21 2.66
1489 1833 4.889995 TGTATGTCGAGACCTGAATCAGAT 59.110 41.667 12.53 0.00 32.44 2.90
1492 1836 5.400066 TTTGTATGTCGAGACCTGAATCA 57.600 39.130 0.34 0.00 0.00 2.57
1564 1908 0.304705 CGCAGTTCCGCAATATGTCC 59.695 55.000 0.00 0.00 0.00 4.02
1606 1950 2.936032 GGTGGCCTCTGAGGGGTT 60.936 66.667 24.43 0.00 35.37 4.11
1693 2056 7.416154 TTCAGAACCAAGTAAGTTAATCACG 57.584 36.000 0.00 0.00 0.00 4.35
1703 2073 6.488683 CCACCTGTAATTTCAGAACCAAGTAA 59.511 38.462 13.18 0.00 37.61 2.24
1962 2346 5.163764 CGAGGAAAGCACATTAACTATGCAA 60.164 40.000 9.40 0.00 41.97 4.08
2010 2394 4.499696 GCAGTTCAGTGCCTTTACATTGTT 60.500 41.667 0.00 0.00 37.49 2.83
2056 2440 0.886490 CCGCCTCATGAATGTAGGGC 60.886 60.000 10.58 10.58 36.50 5.19
2104 2488 1.961133 TCCCCCTACAAGTAACCAGG 58.039 55.000 0.00 0.00 0.00 4.45
2132 2517 3.142174 GGGAAGCATAGAATACAGTGCC 58.858 50.000 0.00 0.00 38.31 5.01
2178 2581 5.507817 GGAGAAGCAATCACAATTCACAACA 60.508 40.000 0.00 0.00 0.00 3.33
2179 2582 4.919754 GGAGAAGCAATCACAATTCACAAC 59.080 41.667 0.00 0.00 0.00 3.32
2182 2585 5.382618 AAGGAGAAGCAATCACAATTCAC 57.617 39.130 0.00 0.00 0.00 3.18
2258 2664 1.584724 TCCTCCCTGAGTTCCCATTC 58.415 55.000 0.00 0.00 0.00 2.67
2357 2764 6.500684 AACGACCGTAGACAGAATAACTTA 57.499 37.500 0.00 0.00 0.00 2.24
2393 2800 3.401182 GGAACATCTCAGATGGATGCTC 58.599 50.000 19.17 6.94 42.88 4.26
2692 3104 7.556275 CCCTGTCCATAGCTAGTTCAAATAAAA 59.444 37.037 0.00 0.00 0.00 1.52
2696 3108 4.141390 CCCCTGTCCATAGCTAGTTCAAAT 60.141 45.833 0.00 0.00 0.00 2.32
2699 3111 2.292918 ACCCCTGTCCATAGCTAGTTCA 60.293 50.000 0.00 0.00 0.00 3.18
2700 3112 2.103263 CACCCCTGTCCATAGCTAGTTC 59.897 54.545 0.00 0.00 0.00 3.01
2701 3113 2.119495 CACCCCTGTCCATAGCTAGTT 58.881 52.381 0.00 0.00 0.00 2.24
2702 3114 1.794714 CACCCCTGTCCATAGCTAGT 58.205 55.000 0.00 0.00 0.00 2.57
2703 3115 0.394565 GCACCCCTGTCCATAGCTAG 59.605 60.000 0.00 0.00 0.00 3.42
2704 3116 1.399744 CGCACCCCTGTCCATAGCTA 61.400 60.000 0.00 0.00 0.00 3.32
2705 3117 2.735772 CGCACCCCTGTCCATAGCT 61.736 63.158 0.00 0.00 0.00 3.32
2706 3118 2.203070 CGCACCCCTGTCCATAGC 60.203 66.667 0.00 0.00 0.00 2.97
2707 3119 1.153369 CACGCACCCCTGTCCATAG 60.153 63.158 0.00 0.00 0.00 2.23
2708 3120 2.665089 CCACGCACCCCTGTCCATA 61.665 63.158 0.00 0.00 0.00 2.74
2709 3121 4.033776 CCACGCACCCCTGTCCAT 62.034 66.667 0.00 0.00 0.00 3.41
2711 3123 3.901797 CTTCCACGCACCCCTGTCC 62.902 68.421 0.00 0.00 0.00 4.02
2712 3124 2.358737 CTTCCACGCACCCCTGTC 60.359 66.667 0.00 0.00 0.00 3.51
2713 3125 4.643387 GCTTCCACGCACCCCTGT 62.643 66.667 0.00 0.00 0.00 4.00
2714 3126 3.850098 AAGCTTCCACGCACCCCTG 62.850 63.158 0.00 0.00 0.00 4.45
2715 3127 3.570212 AAGCTTCCACGCACCCCT 61.570 61.111 0.00 0.00 0.00 4.79
2716 3128 3.365265 CAAGCTTCCACGCACCCC 61.365 66.667 0.00 0.00 0.00 4.95
2717 3129 4.043200 GCAAGCTTCCACGCACCC 62.043 66.667 0.00 0.00 0.00 4.61
2718 3130 1.026718 ATAGCAAGCTTCCACGCACC 61.027 55.000 8.96 0.00 0.00 5.01
2719 3131 0.375106 GATAGCAAGCTTCCACGCAC 59.625 55.000 8.96 0.00 0.00 5.34
2720 3132 0.744414 GGATAGCAAGCTTCCACGCA 60.744 55.000 8.96 0.00 0.00 5.24
2721 3133 0.744414 TGGATAGCAAGCTTCCACGC 60.744 55.000 16.61 0.00 34.65 5.34
2722 3134 1.600957 CATGGATAGCAAGCTTCCACG 59.399 52.381 20.41 13.24 42.09 4.94
2723 3135 2.357009 CACATGGATAGCAAGCTTCCAC 59.643 50.000 20.41 0.00 42.09 4.02
2724 3136 2.646930 CACATGGATAGCAAGCTTCCA 58.353 47.619 20.33 20.33 43.37 3.53
2725 3137 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46
2726 3138 1.336125 GGCACATGGATAGCAAGCTTC 59.664 52.381 0.00 0.00 0.00 3.86
2727 3139 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
2728 3140 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
2729 3141 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
2730 3142 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
2731 3143 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
2732 3144 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49
2733 3145 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
2734 3146 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
2735 3147 1.142936 ATGGCTCTGGCACATGGATA 58.857 50.000 0.00 0.00 41.84 2.59
2736 3148 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
2737 3149 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
2738 3150 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
2739 3151 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21
2740 3152 0.330604 AACTCATGGCTCTGGCACAT 59.669 50.000 0.00 0.00 41.84 3.21
2741 3153 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57
2742 3154 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
2743 3155 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
2744 3156 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
2752 3164 3.516981 AGATCTCGTGACCAACTCATG 57.483 47.619 0.00 0.00 37.26 3.07
2753 3165 5.452496 CCATAAGATCTCGTGACCAACTCAT 60.452 44.000 0.00 0.00 0.00 2.90
2754 3166 4.142160 CCATAAGATCTCGTGACCAACTCA 60.142 45.833 0.00 0.00 0.00 3.41
2755 3167 4.363999 CCATAAGATCTCGTGACCAACTC 58.636 47.826 0.00 0.00 0.00 3.01
2756 3168 3.133003 CCCATAAGATCTCGTGACCAACT 59.867 47.826 0.00 0.00 0.00 3.16
2757 3169 3.118738 ACCCATAAGATCTCGTGACCAAC 60.119 47.826 0.00 0.00 0.00 3.77
2758 3170 3.104512 ACCCATAAGATCTCGTGACCAA 58.895 45.455 0.00 0.00 0.00 3.67
2759 3171 2.747177 ACCCATAAGATCTCGTGACCA 58.253 47.619 0.00 0.00 0.00 4.02
2760 3172 3.821421 AACCCATAAGATCTCGTGACC 57.179 47.619 0.00 0.00 0.00 4.02
2761 3173 4.567159 GTGAAACCCATAAGATCTCGTGAC 59.433 45.833 0.00 0.00 0.00 3.67
2762 3174 4.755411 GTGAAACCCATAAGATCTCGTGA 58.245 43.478 0.00 0.00 0.00 4.35
2778 3190 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
2779 3191 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
2780 3192 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
2781 3193 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
2782 3194 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
2783 3195 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
2784 3196 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
2785 3197 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
2786 3198 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
2787 3199 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
2788 3200 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
2789 3201 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
2798 3210 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
2799 3211 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
2800 3212 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
2801 3213 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
2802 3214 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
2803 3215 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
2804 3216 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
2805 3217 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
2806 3218 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
2807 3219 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
2808 3220 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
2809 3221 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
2810 3222 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
2811 3223 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
2812 3224 7.820044 TTTACAACAACAACAAAGCCTTTAG 57.180 32.000 0.00 0.00 0.00 1.85
2813 3225 8.779354 AATTTACAACAACAACAAAGCCTTTA 57.221 26.923 0.00 0.00 0.00 1.85
2814 3226 7.680442 AATTTACAACAACAACAAAGCCTTT 57.320 28.000 0.00 0.00 0.00 3.11
2815 3227 7.389053 TGAAATTTACAACAACAACAAAGCCTT 59.611 29.630 0.00 0.00 0.00 4.35
2816 3228 6.876257 TGAAATTTACAACAACAACAAAGCCT 59.124 30.769 0.00 0.00 0.00 4.58
2817 3229 7.066374 TGAAATTTACAACAACAACAAAGCC 57.934 32.000 0.00 0.00 0.00 4.35
2818 3230 7.738345 ACTGAAATTTACAACAACAACAAAGC 58.262 30.769 0.00 0.00 0.00 3.51
2819 3231 9.739786 GAACTGAAATTTACAACAACAACAAAG 57.260 29.630 0.00 0.00 0.00 2.77
2820 3232 9.261180 TGAACTGAAATTTACAACAACAACAAA 57.739 25.926 0.00 0.00 0.00 2.83
2821 3233 8.704234 GTGAACTGAAATTTACAACAACAACAA 58.296 29.630 0.00 0.00 0.00 2.83
2822 3234 7.867909 TGTGAACTGAAATTTACAACAACAACA 59.132 29.630 0.00 0.00 0.00 3.33
2823 3235 8.233692 TGTGAACTGAAATTTACAACAACAAC 57.766 30.769 0.00 0.00 0.00 3.32
2824 3236 8.994429 ATGTGAACTGAAATTTACAACAACAA 57.006 26.923 0.00 0.00 32.50 2.83
2825 3237 8.994429 AATGTGAACTGAAATTTACAACAACA 57.006 26.923 0.00 0.00 32.50 3.33
2925 3337 7.639945 ACAAAAGGAAGATAAAACAAGAGACG 58.360 34.615 0.00 0.00 0.00 4.18
3731 4228 6.067350 TCATAATGCATGGTATTTGGTAGCA 58.933 36.000 0.00 0.00 44.24 3.49
4006 4505 9.848172 CATTATTTAACTGACAAAACAACTTGC 57.152 29.630 0.00 0.00 0.00 4.01
4119 4625 3.098377 ACTCAGAGATCATGCACACTCT 58.902 45.455 3.79 0.00 39.82 3.24
4243 4749 2.290008 TGAAACCCATAAGAGCTCGCAA 60.290 45.455 8.37 0.00 0.00 4.85
4281 4787 5.186992 ACAAAGCTTTTAGTCCCAAACAAGT 59.813 36.000 9.53 0.00 0.00 3.16
4298 4804 4.376146 ACAACAACAACAACAACAAAGCT 58.624 34.783 0.00 0.00 0.00 3.74
4306 4812 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
4624 5139 7.307694 TCAACAAATCCAAATTCTCGATCTTG 58.692 34.615 0.00 0.00 0.00 3.02
4691 5206 1.608590 CAAATTCCCGTGCTTCACTGT 59.391 47.619 0.00 0.00 31.34 3.55
5037 5552 1.226974 CCAGTCGTATCCCAGTGCG 60.227 63.158 0.00 0.00 0.00 5.34
5302 5817 4.153117 GCCTGTCATTTCATATTAGGCTCG 59.847 45.833 0.00 0.00 44.33 5.03
5336 5851 0.940991 CTGCAGCAAAAAGAACCGCC 60.941 55.000 0.00 0.00 0.00 6.13
5420 5935 4.450976 TGAAACCATATGCAGACGCTATT 58.549 39.130 0.00 0.00 39.64 1.73
5623 6138 3.833070 TCGGATAGCTCCTAAAGAATCCC 59.167 47.826 0.00 0.00 39.65 3.85
6065 6583 0.684535 TGATTCCTCGCAGACCAACA 59.315 50.000 0.00 0.00 0.00 3.33
6209 6727 1.805945 GTAGTCCAGCCTTGCGACG 60.806 63.158 0.00 0.00 32.86 5.12
6243 6761 0.975040 ACCTTTGCTTGTTGGTGCCA 60.975 50.000 0.00 0.00 0.00 4.92
6244 6762 0.530431 CACCTTTGCTTGTTGGTGCC 60.530 55.000 0.00 0.00 42.55 5.01
6314 6832 4.552378 CGCTCATAAATCTGCTCTTGCTTC 60.552 45.833 0.00 0.00 40.48 3.86
6571 7094 2.027192 GCAGGATCCACTACTCACCAAA 60.027 50.000 15.82 0.00 0.00 3.28
6761 7291 6.261603 TGTGAAGGATGGTACTACATACTACG 59.738 42.308 0.00 0.00 41.14 3.51
6768 7298 4.941263 GCAAATGTGAAGGATGGTACTACA 59.059 41.667 0.00 0.00 0.00 2.74
6887 7418 0.966920 AGTACTACACGCAAGGCAGT 59.033 50.000 0.00 0.00 46.39 4.40
6927 7458 7.716612 TCGACTTCAGAGAAATCTTATATGCA 58.283 34.615 0.00 0.00 0.00 3.96
7006 7539 7.464178 GCATCAACGTCTACCATACTAAAGTTG 60.464 40.741 0.00 0.00 38.12 3.16
7024 7557 8.533965 CCATGTTTATATGAAAAAGCATCAACG 58.466 33.333 0.00 0.00 0.00 4.10
7031 7564 9.423061 AGTTTGACCATGTTTATATGAAAAAGC 57.577 29.630 0.00 0.00 0.00 3.51
7075 7608 4.792521 ACTCCGCATATAAGATCTGTCC 57.207 45.455 0.00 0.00 0.00 4.02
7165 7864 5.940470 ACTGAGCTCCGTTTCAAATTTATCT 59.060 36.000 12.15 0.00 0.00 1.98
7188 7887 5.390145 GCTTCATCATGTTTTCATTGGCAAC 60.390 40.000 0.00 0.00 38.64 4.17
7192 7891 7.171848 TCAAAAGCTTCATCATGTTTTCATTGG 59.828 33.333 0.00 0.00 38.64 3.16
7229 7929 5.514274 TTATTACCATTTGCAAGCCTAGC 57.486 39.130 0.00 0.00 0.00 3.42
7230 7930 7.491682 ACATTTATTACCATTTGCAAGCCTAG 58.508 34.615 0.00 0.00 0.00 3.02
7231 7931 7.416964 ACATTTATTACCATTTGCAAGCCTA 57.583 32.000 0.00 0.00 0.00 3.93
7232 7932 6.298441 ACATTTATTACCATTTGCAAGCCT 57.702 33.333 0.00 0.00 0.00 4.58
7233 7933 7.171337 CCATACATTTATTACCATTTGCAAGCC 59.829 37.037 0.00 0.00 0.00 4.35
7234 7934 7.307337 GCCATACATTTATTACCATTTGCAAGC 60.307 37.037 0.00 0.00 0.00 4.01
7235 7935 7.710044 TGCCATACATTTATTACCATTTGCAAG 59.290 33.333 0.00 0.00 0.00 4.01
7236 7936 7.559486 TGCCATACATTTATTACCATTTGCAA 58.441 30.769 0.00 0.00 0.00 4.08
7237 7937 7.117285 TGCCATACATTTATTACCATTTGCA 57.883 32.000 0.00 0.00 0.00 4.08
7238 7938 8.430801 TTTGCCATACATTTATTACCATTTGC 57.569 30.769 0.00 0.00 0.00 3.68
7280 8009 3.994392 AGTACGCTTGTCATTTACACCTG 59.006 43.478 0.00 0.00 38.00 4.00
7281 8010 4.243270 GAGTACGCTTGTCATTTACACCT 58.757 43.478 0.00 0.00 38.00 4.00
7297 8026 1.337728 TGTGCACAAGATGGGAGTACG 60.338 52.381 19.28 0.00 0.00 3.67
7299 8028 2.940971 GCATGTGCACAAGATGGGAGTA 60.941 50.000 25.72 0.00 41.59 2.59
7300 8029 1.830279 CATGTGCACAAGATGGGAGT 58.170 50.000 25.72 0.00 0.00 3.85
7301 8030 0.454600 GCATGTGCACAAGATGGGAG 59.545 55.000 25.72 7.48 41.59 4.30
7330 8063 2.905085 TGTGAATTTGGCCAATGACCAT 59.095 40.909 21.26 6.37 36.96 3.55
7372 8105 2.796593 GCTTTGGTTGAATTCACAGCAC 59.203 45.455 7.89 3.43 36.87 4.40
7425 8162 0.179936 ATTGCTACTGCCTCTGCCTC 59.820 55.000 0.00 0.00 38.71 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.