Multiple sequence alignment - TraesCS3D01G426600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G426600 chr3D 100.000 5976 0 0 957 6932 539897212 539903187 0.000000e+00 11036
1 TraesCS3D01G426600 chr3D 100.000 504 0 0 1 504 539896256 539896759 0.000000e+00 931
2 TraesCS3D01G426600 chr3A 94.295 5977 193 60 990 6932 674744559 674750421 0.000000e+00 9012
3 TraesCS3D01G426600 chr3A 80.203 394 40 13 50 406 674743697 674744089 1.920000e-65 261
4 TraesCS3D01G426600 chr3B 88.941 4675 331 79 2336 6932 715881106 715885672 0.000000e+00 5598
5 TraesCS3D01G426600 chr3B 86.643 1400 95 35 957 2294 715879726 715881095 0.000000e+00 1465
6 TraesCS3D01G426600 chr3B 80.939 362 26 24 168 504 715879355 715879698 5.370000e-61 246
7 TraesCS3D01G426600 chrUn 100.000 398 0 0 4579 4976 479027681 479028078 0.000000e+00 736
8 TraesCS3D01G426600 chr2D 88.286 350 29 5 5260 5608 544929789 544929451 6.470000e-110 409
9 TraesCS3D01G426600 chr2A 87.611 339 32 5 5261 5598 688580207 688580536 1.090000e-102 385
10 TraesCS3D01G426600 chr6A 82.533 458 46 16 2010 2465 21546199 21545774 8.490000e-99 372
11 TraesCS3D01G426600 chr6A 85.338 266 39 0 1650 1915 21546550 21546285 6.850000e-70 276
12 TraesCS3D01G426600 chr2B 86.145 166 16 5 5235 5394 651601809 651601645 9.240000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G426600 chr3D 539896256 539903187 6931 False 5983.500000 11036 100.000000 1 6932 2 chr3D.!!$F1 6931
1 TraesCS3D01G426600 chr3A 674743697 674750421 6724 False 4636.500000 9012 87.249000 50 6932 2 chr3A.!!$F1 6882
2 TraesCS3D01G426600 chr3B 715879355 715885672 6317 False 2436.333333 5598 85.507667 168 6932 3 chr3B.!!$F1 6764
3 TraesCS3D01G426600 chr6A 21545774 21546550 776 True 324.000000 372 83.935500 1650 2465 2 chr6A.!!$R1 815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
432 495 0.031178 CTTGTTGCTGCCGCTTTTCT 59.969 50.000 0.70 0.00 36.97 2.52 F
437 500 1.032014 TGCTGCCGCTTTTCTTTCTT 58.968 45.000 0.70 0.00 36.97 2.52 F
1105 1170 1.137086 TCTCTTCTATCGGGCTGTTGC 59.863 52.381 0.00 0.00 38.76 4.17 F
1297 1372 1.365999 CCCTTTTGGTCCGGTTTGC 59.634 57.895 0.00 0.00 38.10 3.68 F
2470 2615 0.673644 TTTTACAGCTCAGCTCCGCC 60.674 55.000 0.00 0.00 36.40 6.13 F
3205 3364 0.185901 ACTGCCCATGTGTCCTGTTT 59.814 50.000 0.00 0.00 0.00 2.83 F
3379 3541 1.660607 ACTGTGCATCGTATCGCAAAG 59.339 47.619 0.07 0.07 46.91 2.77 F
4433 4617 0.255318 CTGAGATGCCCTTTGCTCCT 59.745 55.000 0.00 0.00 42.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1297 1372 0.106519 AGGATTGAATGCCCCGGAAG 60.107 55.000 0.73 0.0 0.00 3.46 R
1915 2023 0.396060 GGGAGCAGAGCAAGATAGGG 59.604 60.000 0.00 0.0 0.00 3.53 R
1916 2024 0.396060 GGGGAGCAGAGCAAGATAGG 59.604 60.000 0.00 0.0 0.00 2.57 R
3067 3226 1.001974 AGTTGAGCGTGCTGTTATGGA 59.998 47.619 0.00 0.0 0.00 3.41 R
3773 3949 0.173481 TCGCCTGATCAAGAACCTCG 59.827 55.000 0.00 0.0 0.00 4.63 R
4422 4606 0.179006 GGCAGGATAGGAGCAAAGGG 60.179 60.000 0.00 0.0 0.00 3.95 R
4568 4752 1.808945 CTGATGCTTAATCCGATGCCC 59.191 52.381 0.00 0.0 34.00 5.36 R
6125 6316 0.178990 AAACAGAGCCTGGTGGTTCC 60.179 55.000 7.06 0.0 43.54 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.803082 CATGGCAAGCCGTGGTCG 61.803 66.667 22.61 0.00 46.47 4.79
20 21 4.329545 ATGGCAAGCCGTGGTCGT 62.330 61.111 4.74 0.00 39.42 4.34
21 22 4.980805 TGGCAAGCCGTGGTCGTC 62.981 66.667 6.60 0.00 39.42 4.20
24 25 4.657824 CAAGCCGTGGTCGTCCGT 62.658 66.667 0.00 0.00 36.30 4.69
25 26 3.920196 AAGCCGTGGTCGTCCGTT 61.920 61.111 0.00 0.00 36.30 4.44
26 27 3.450043 AAGCCGTGGTCGTCCGTTT 62.450 57.895 0.00 0.00 36.30 3.60
27 28 2.049248 GCCGTGGTCGTCCGTTTA 60.049 61.111 0.00 0.00 36.30 2.01
28 29 1.664333 GCCGTGGTCGTCCGTTTAA 60.664 57.895 0.00 0.00 36.30 1.52
29 30 1.620413 GCCGTGGTCGTCCGTTTAAG 61.620 60.000 0.00 0.00 36.30 1.85
30 31 0.039256 CCGTGGTCGTCCGTTTAAGA 60.039 55.000 0.00 0.00 36.30 2.10
31 32 1.334054 CGTGGTCGTCCGTTTAAGAG 58.666 55.000 0.00 0.00 36.30 2.85
32 33 1.066136 GTGGTCGTCCGTTTAAGAGC 58.934 55.000 0.00 0.00 36.30 4.09
33 34 0.675083 TGGTCGTCCGTTTAAGAGCA 59.325 50.000 0.00 0.00 38.56 4.26
34 35 1.066136 GGTCGTCCGTTTAAGAGCAC 58.934 55.000 0.00 0.00 0.00 4.40
35 36 1.603678 GGTCGTCCGTTTAAGAGCACA 60.604 52.381 0.00 0.00 0.00 4.57
36 37 1.719780 GTCGTCCGTTTAAGAGCACAG 59.280 52.381 0.00 0.00 0.00 3.66
37 38 1.068474 CGTCCGTTTAAGAGCACAGG 58.932 55.000 0.00 0.00 0.00 4.00
38 39 1.336517 CGTCCGTTTAAGAGCACAGGA 60.337 52.381 0.00 0.00 0.00 3.86
39 40 2.762745 GTCCGTTTAAGAGCACAGGAA 58.237 47.619 0.00 0.00 0.00 3.36
40 41 2.737252 GTCCGTTTAAGAGCACAGGAAG 59.263 50.000 0.00 0.00 0.00 3.46
41 42 2.367567 TCCGTTTAAGAGCACAGGAAGT 59.632 45.455 0.00 0.00 0.00 3.01
42 43 3.575256 TCCGTTTAAGAGCACAGGAAGTA 59.425 43.478 0.00 0.00 0.00 2.24
43 44 3.678548 CCGTTTAAGAGCACAGGAAGTAC 59.321 47.826 0.00 0.00 0.00 2.73
44 45 4.304110 CGTTTAAGAGCACAGGAAGTACA 58.696 43.478 0.00 0.00 0.00 2.90
45 46 4.150098 CGTTTAAGAGCACAGGAAGTACAC 59.850 45.833 0.00 0.00 0.00 2.90
46 47 4.948341 TTAAGAGCACAGGAAGTACACA 57.052 40.909 0.00 0.00 0.00 3.72
47 48 3.393089 AAGAGCACAGGAAGTACACAG 57.607 47.619 0.00 0.00 0.00 3.66
48 49 1.620819 AGAGCACAGGAAGTACACAGG 59.379 52.381 0.00 0.00 0.00 4.00
60 61 8.131100 CAGGAAGTACACAGGCATATAAAATTG 58.869 37.037 0.00 0.00 0.00 2.32
61 62 7.834181 AGGAAGTACACAGGCATATAAAATTGT 59.166 33.333 0.00 0.00 0.00 2.71
118 119 6.128227 GCCAAATGAATGCAAGCATAAAAGAA 60.128 34.615 8.12 0.00 35.31 2.52
120 121 7.332430 CCAAATGAATGCAAGCATAAAAGAAGA 59.668 33.333 8.12 0.00 35.31 2.87
122 123 5.957798 TGAATGCAAGCATAAAAGAAGAGG 58.042 37.500 8.12 0.00 35.31 3.69
126 127 4.697352 TGCAAGCATAAAAGAAGAGGAGTC 59.303 41.667 0.00 0.00 0.00 3.36
130 131 6.472686 AGCATAAAAGAAGAGGAGTCGTAT 57.527 37.500 0.00 0.00 0.00 3.06
131 132 6.879400 AGCATAAAAGAAGAGGAGTCGTATT 58.121 36.000 0.00 0.00 0.00 1.89
133 134 7.278868 AGCATAAAAGAAGAGGAGTCGTATTTG 59.721 37.037 0.00 0.00 27.93 2.32
134 135 5.864628 AAAAGAAGAGGAGTCGTATTTGC 57.135 39.130 0.00 0.00 27.93 3.68
136 137 3.851098 AGAAGAGGAGTCGTATTTGCAC 58.149 45.455 0.00 0.00 0.00 4.57
137 138 2.279582 AGAGGAGTCGTATTTGCACG 57.720 50.000 0.00 0.00 43.28 5.34
138 139 1.544691 AGAGGAGTCGTATTTGCACGT 59.455 47.619 0.00 0.00 42.51 4.49
139 140 2.029290 AGAGGAGTCGTATTTGCACGTT 60.029 45.455 0.00 0.00 42.51 3.99
140 141 2.735134 GAGGAGTCGTATTTGCACGTTT 59.265 45.455 0.00 0.00 42.51 3.60
141 142 2.478894 AGGAGTCGTATTTGCACGTTTG 59.521 45.455 0.00 0.00 42.51 2.93
158 173 3.982701 CGTTTGCTGCTGATTTGATTTGA 59.017 39.130 0.00 0.00 0.00 2.69
167 182 6.151691 TGCTGATTTGATTTGAAACAGTAGC 58.848 36.000 0.00 0.00 0.00 3.58
168 183 6.151691 GCTGATTTGATTTGAAACAGTAGCA 58.848 36.000 0.00 0.00 0.00 3.49
169 184 6.307318 GCTGATTTGATTTGAAACAGTAGCAG 59.693 38.462 0.00 0.00 0.00 4.24
170 185 7.275888 TGATTTGATTTGAAACAGTAGCAGT 57.724 32.000 0.00 0.00 0.00 4.40
171 186 8.389779 TGATTTGATTTGAAACAGTAGCAGTA 57.610 30.769 0.00 0.00 0.00 2.74
172 187 8.506437 TGATTTGATTTGAAACAGTAGCAGTAG 58.494 33.333 0.00 0.00 0.00 2.57
176 191 6.868864 TGATTTGAAACAGTAGCAGTAGTCTC 59.131 38.462 0.00 0.00 0.00 3.36
238 255 8.603242 ATCGTATTAAACTCTCTCTCTCTCTC 57.397 38.462 0.00 0.00 0.00 3.20
240 257 8.916062 TCGTATTAAACTCTCTCTCTCTCTCTA 58.084 37.037 0.00 0.00 0.00 2.43
247 264 3.131396 CTCTCTCTCTCTCTACCGCTTC 58.869 54.545 0.00 0.00 0.00 3.86
248 265 2.158871 TCTCTCTCTCTCTACCGCTTCC 60.159 54.545 0.00 0.00 0.00 3.46
357 407 2.094130 GTGCCACCTTCTACCACTCTAC 60.094 54.545 0.00 0.00 0.00 2.59
358 408 2.225293 TGCCACCTTCTACCACTCTACT 60.225 50.000 0.00 0.00 0.00 2.57
432 495 0.031178 CTTGTTGCTGCCGCTTTTCT 59.969 50.000 0.70 0.00 36.97 2.52
437 500 1.032014 TGCTGCCGCTTTTCTTTCTT 58.968 45.000 0.70 0.00 36.97 2.52
438 501 1.408702 TGCTGCCGCTTTTCTTTCTTT 59.591 42.857 0.70 0.00 36.97 2.52
439 502 1.788886 GCTGCCGCTTTTCTTTCTTTG 59.211 47.619 0.00 0.00 0.00 2.77
441 504 1.408702 TGCCGCTTTTCTTTCTTTGCT 59.591 42.857 0.00 0.00 0.00 3.91
442 505 2.159114 TGCCGCTTTTCTTTCTTTGCTT 60.159 40.909 0.00 0.00 0.00 3.91
1051 1114 2.433994 GGAGCTGCTCCTCCTCCTG 61.434 68.421 35.51 0.00 46.41 3.86
1062 1125 3.535962 CCTCCTGCTCGCCTCTCC 61.536 72.222 0.00 0.00 0.00 3.71
1066 1129 2.489275 CCTGCTCGCCTCTCCTCTC 61.489 68.421 0.00 0.00 0.00 3.20
1067 1130 2.826287 TGCTCGCCTCTCCTCTCG 60.826 66.667 0.00 0.00 0.00 4.04
1068 1131 2.826738 GCTCGCCTCTCCTCTCGT 60.827 66.667 0.00 0.00 0.00 4.18
1069 1132 2.830285 GCTCGCCTCTCCTCTCGTC 61.830 68.421 0.00 0.00 0.00 4.20
1072 1135 1.153249 CGCCTCTCCTCTCGTCTCT 60.153 63.158 0.00 0.00 0.00 3.10
1093 1158 7.610305 GTCTCTTCTTCCTTCTCTTCTCTTCTA 59.390 40.741 0.00 0.00 0.00 2.10
1095 1160 8.519799 TCTTCTTCCTTCTCTTCTCTTCTATC 57.480 38.462 0.00 0.00 0.00 2.08
1096 1161 6.935741 TCTTCCTTCTCTTCTCTTCTATCG 57.064 41.667 0.00 0.00 0.00 2.92
1097 1162 5.825679 TCTTCCTTCTCTTCTCTTCTATCGG 59.174 44.000 0.00 0.00 0.00 4.18
1098 1163 4.465886 TCCTTCTCTTCTCTTCTATCGGG 58.534 47.826 0.00 0.00 0.00 5.14
1099 1164 3.005367 CCTTCTCTTCTCTTCTATCGGGC 59.995 52.174 0.00 0.00 0.00 6.13
1100 1165 3.586470 TCTCTTCTCTTCTATCGGGCT 57.414 47.619 0.00 0.00 0.00 5.19
1102 1167 2.955660 CTCTTCTCTTCTATCGGGCTGT 59.044 50.000 0.00 0.00 0.00 4.40
1103 1168 3.366396 TCTTCTCTTCTATCGGGCTGTT 58.634 45.455 0.00 0.00 0.00 3.16
1104 1169 3.131223 TCTTCTCTTCTATCGGGCTGTTG 59.869 47.826 0.00 0.00 0.00 3.33
1105 1170 1.137086 TCTCTTCTATCGGGCTGTTGC 59.863 52.381 0.00 0.00 38.76 4.17
1127 1192 4.456253 CGTCGGTCGGTCGGTCAG 62.456 72.222 0.00 0.00 35.71 3.51
1161 1226 2.359975 CAGCTCGGGGGTTTGGTC 60.360 66.667 0.00 0.00 0.00 4.02
1166 1231 2.282180 CGGGGGTTTGGTCTGGTG 60.282 66.667 0.00 0.00 0.00 4.17
1167 1232 2.600470 GGGGGTTTGGTCTGGTGC 60.600 66.667 0.00 0.00 0.00 5.01
1197 1262 2.472909 GGCGATTTTGGAGCTCGGG 61.473 63.158 7.83 0.00 33.17 5.14
1199 1264 2.472909 CGATTTTGGAGCTCGGGGC 61.473 63.158 7.83 0.00 42.19 5.80
1297 1372 1.365999 CCCTTTTGGTCCGGTTTGC 59.634 57.895 0.00 0.00 38.10 3.68
1329 1404 2.070039 AATCCTCCAATCCGGGCGA 61.070 57.895 0.00 0.00 34.36 5.54
1565 1670 4.366684 GGGCTGGTGGGGTTCCTG 62.367 72.222 0.00 0.00 0.00 3.86
1915 2023 2.189521 CGCCATCACCCAGGTACC 59.810 66.667 2.73 2.73 0.00 3.34
1916 2024 2.595655 GCCATCACCCAGGTACCC 59.404 66.667 8.74 0.00 0.00 3.69
1929 2053 2.366916 CAGGTACCCCTATCTTGCTCTG 59.633 54.545 8.74 0.00 39.89 3.35
1931 2055 2.043227 GTACCCCTATCTTGCTCTGCT 58.957 52.381 0.00 0.00 0.00 4.24
1932 2056 1.127343 ACCCCTATCTTGCTCTGCTC 58.873 55.000 0.00 0.00 0.00 4.26
1994 2122 0.899720 CTAACTAACCCTGTCCGGCA 59.100 55.000 0.00 0.00 0.00 5.69
1995 2123 1.485066 CTAACTAACCCTGTCCGGCAT 59.515 52.381 0.00 0.00 0.00 4.40
2000 2128 4.511246 CCCTGTCCGGCATGGCAT 62.511 66.667 20.37 0.00 37.80 4.40
2002 2130 3.214123 CTGTCCGGCATGGCATGG 61.214 66.667 27.48 13.24 37.80 3.66
2307 2435 5.539582 TGTGCGTGACCATTAATTTACTC 57.460 39.130 0.00 0.00 0.00 2.59
2467 2612 1.807142 GTGGTTTTACAGCTCAGCTCC 59.193 52.381 0.00 0.00 36.40 4.70
2470 2615 0.673644 TTTTACAGCTCAGCTCCGCC 60.674 55.000 0.00 0.00 36.40 6.13
2555 2703 4.904253 TTTTACCAACTTACAGTGTGGC 57.096 40.909 5.88 0.00 32.96 5.01
2580 2731 6.892691 CACTTGTTAGTGTCTTTGGATTCTC 58.107 40.000 0.00 0.00 45.46 2.87
2762 2913 1.215382 CCTCGGCGTGATCTTGACA 59.785 57.895 10.96 0.00 0.00 3.58
2789 2940 1.988406 GTACAAGTCCGAGCCCCCT 60.988 63.158 0.00 0.00 0.00 4.79
3067 3226 1.915489 TGATACAGGCAGTGGGATGTT 59.085 47.619 0.00 0.00 0.00 2.71
3145 3304 4.631377 CAGGTGATTGATTTGTCGCTCTTA 59.369 41.667 0.00 0.00 0.00 2.10
3205 3364 0.185901 ACTGCCCATGTGTCCTGTTT 59.814 50.000 0.00 0.00 0.00 2.83
3233 3392 5.008712 CCCTTCTTCTCTGTAAAACACAACC 59.991 44.000 0.00 0.00 36.48 3.77
3379 3541 1.660607 ACTGTGCATCGTATCGCAAAG 59.339 47.619 0.07 0.07 46.91 2.77
3466 3628 6.153680 CCAAGTCACAGGTTAGTAATCTCTCT 59.846 42.308 0.00 0.00 0.00 3.10
3494 3656 6.531948 CACAACCTATACTGCTTGTCTAACTC 59.468 42.308 0.00 0.00 0.00 3.01
3752 3928 3.752339 GCCCAAGCCAGCGGAAAG 61.752 66.667 0.00 0.00 0.00 2.62
3767 3943 2.552373 CGGAAAGGCTTTAGTGTCCCTT 60.552 50.000 13.37 0.00 39.27 3.95
3773 3949 7.148120 GGAAAGGCTTTAGTGTCCCTTATAAAC 60.148 40.741 13.37 0.00 36.71 2.01
4052 4233 5.654650 TCAAGTTCCACAAACACTTATTGGT 59.345 36.000 0.00 0.00 40.56 3.67
4135 4316 9.856488 AAGATGATTAATATACGTGAATAGCGT 57.144 29.630 0.00 0.00 45.11 5.07
4247 4431 5.357257 TCACAGTTTACAGAAAGAGGACAC 58.643 41.667 0.00 0.00 0.00 3.67
4340 4524 4.082463 ACAAACAACACCTACAACACCTTG 60.082 41.667 0.00 0.00 0.00 3.61
4388 4572 2.286872 CATAGTTGGCAGAGCTTCCAG 58.713 52.381 0.00 0.00 33.32 3.86
4413 4597 6.411630 TTTTCAATACGGATTTACACTCGG 57.588 37.500 0.00 0.00 0.00 4.63
4422 4606 2.010145 TTTACACTCGGCTGAGATGC 57.990 50.000 29.29 0.00 45.57 3.91
4433 4617 0.255318 CTGAGATGCCCTTTGCTCCT 59.745 55.000 0.00 0.00 42.00 3.69
4437 4621 1.423161 AGATGCCCTTTGCTCCTATCC 59.577 52.381 0.00 0.00 42.00 2.59
5195 5379 3.367292 GGCAAATCATTGTGGTTGACGAT 60.367 43.478 0.00 0.00 38.85 3.73
5363 5547 7.396055 CCAGAAATGGATGGGTAAGTCTTTAAA 59.604 37.037 0.00 0.00 32.63 1.52
5527 5714 1.164411 CGCCACCAGAATGTGCTAAA 58.836 50.000 0.00 0.00 34.85 1.85
5736 5923 7.054124 GGATTGTAAATTAGTGGAGGATGTCA 58.946 38.462 0.00 0.00 0.00 3.58
5758 5945 0.251474 ACACAGCTCATGGCATTGGT 60.251 50.000 0.00 0.00 44.79 3.67
5814 6001 7.364762 CCCAAGAGTAAGCTCCTCTGTAATTTA 60.365 40.741 14.66 0.00 42.59 1.40
5819 6006 9.478768 GAGTAAGCTCCTCTGTAATTTATTACC 57.521 37.037 9.48 0.00 37.77 2.85
5873 6060 9.495754 CTTATTTAAGAATCAAACTAGCACTGC 57.504 33.333 0.00 0.00 35.33 4.40
6051 6242 8.232412 TCCGAGCTCATTATATTATATACCCCT 58.768 37.037 15.40 0.00 0.00 4.79
6063 6254 2.918774 ATACCCCTTGGAATCCTCCT 57.081 50.000 0.00 0.00 42.94 3.69
6078 6269 3.724478 TCCTCCTGGTCTAATGTCATGT 58.276 45.455 0.00 0.00 34.23 3.21
6121 6312 6.261158 GGTATGAGCTTAAAAACCTGGAGATC 59.739 42.308 0.00 0.00 0.00 2.75
6124 6315 5.104259 AGCTTAAAAACCTGGAGATCGAT 57.896 39.130 0.00 0.00 0.00 3.59
6125 6316 4.878397 AGCTTAAAAACCTGGAGATCGATG 59.122 41.667 0.54 0.00 0.00 3.84
6126 6317 4.035675 GCTTAAAAACCTGGAGATCGATGG 59.964 45.833 0.54 0.00 0.00 3.51
6128 6319 4.301072 AAAAACCTGGAGATCGATGGAA 57.699 40.909 0.54 0.00 0.00 3.53
6129 6320 2.990066 AACCTGGAGATCGATGGAAC 57.010 50.000 0.54 0.00 0.00 3.62
6130 6321 1.123928 ACCTGGAGATCGATGGAACC 58.876 55.000 0.54 1.14 0.00 3.62
6131 6322 1.123077 CCTGGAGATCGATGGAACCA 58.877 55.000 0.54 5.99 0.00 3.67
6204 6395 2.231478 TGTAAAGCTCTTGGAGTCGAGG 59.769 50.000 0.00 0.00 31.39 4.63
6213 6404 2.335369 GAGTCGAGGTGCACGTGT 59.665 61.111 18.18 0.00 0.00 4.49
6238 6429 4.789481 GCATTTTGTTCAGCAACTTCTCGA 60.789 41.667 0.00 0.00 36.72 4.04
6247 6438 1.456165 GCAACTTCTCGAAGACGGTTC 59.544 52.381 13.22 0.00 40.79 3.62
6248 6439 2.739292 CAACTTCTCGAAGACGGTTCA 58.261 47.619 13.22 0.00 40.79 3.18
6282 6473 1.739929 CCAACCGCATACGCTGACA 60.740 57.895 0.00 0.00 38.22 3.58
6303 6494 0.108615 CAGGTTTCAGCTCGACCGAT 60.109 55.000 4.51 0.00 38.48 4.18
6335 6526 9.790389 CCGCCTTTGTAATGTAAATGTAAAATA 57.210 29.630 0.00 0.00 0.00 1.40
6402 6596 7.440505 TGTATGGGTGTACATAATTAGGTGT 57.559 36.000 12.86 5.10 35.29 4.16
6426 6620 1.691434 TGGTTTGTGCAGGAATTTCCC 59.309 47.619 11.92 0.00 37.19 3.97
6505 6700 2.227388 ACATTCAAAGCTGAAGCCTTCG 59.773 45.455 0.00 0.00 44.68 3.79
6515 6710 3.057946 GCTGAAGCCTTCGTTTTCTTGAT 60.058 43.478 0.00 0.00 34.31 2.57
6526 6721 3.370366 CGTTTTCTTGATCTCTCAGCTGG 59.630 47.826 15.13 4.77 31.68 4.85
6535 6730 1.615883 TCTCTCAGCTGGTGTGTTCTC 59.384 52.381 15.13 0.00 0.00 2.87
6605 6800 0.032615 TCCTGCTGTTGGTTGGGTTT 60.033 50.000 0.00 0.00 0.00 3.27
6606 6801 0.389025 CCTGCTGTTGGTTGGGTTTC 59.611 55.000 0.00 0.00 0.00 2.78
6607 6802 1.402787 CTGCTGTTGGTTGGGTTTCT 58.597 50.000 0.00 0.00 0.00 2.52
6608 6803 1.338020 CTGCTGTTGGTTGGGTTTCTC 59.662 52.381 0.00 0.00 0.00 2.87
6609 6804 1.064017 TGCTGTTGGTTGGGTTTCTCT 60.064 47.619 0.00 0.00 0.00 3.10
6610 6805 2.031870 GCTGTTGGTTGGGTTTCTCTT 58.968 47.619 0.00 0.00 0.00 2.85
6723 6936 1.714011 TTGCCTGATGTCACCCACCA 61.714 55.000 0.00 0.00 0.00 4.17
6850 7063 2.731976 GCGATGGAGGCTAAACTAATCG 59.268 50.000 0.00 0.00 38.84 3.34
6880 7093 3.505680 TGCAATGGTGTAATCCTGTGTTC 59.494 43.478 0.00 0.00 0.00 3.18
6887 7100 3.815401 GTGTAATCCTGTGTTCACTTGCT 59.185 43.478 4.59 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.971167 GACCACGGCTTGCCATGAA 60.971 57.895 9.43 0.00 0.00 2.57
1 2 2.359850 GACCACGGCTTGCCATGA 60.360 61.111 9.43 0.00 0.00 3.07
2 3 3.803082 CGACCACGGCTTGCCATG 61.803 66.667 12.45 6.59 35.72 3.66
3 4 4.329545 ACGACCACGGCTTGCCAT 62.330 61.111 12.45 0.00 44.46 4.40
4 5 4.980805 GACGACCACGGCTTGCCA 62.981 66.667 12.45 0.00 45.04 4.92
11 12 0.039256 TCTTAAACGGACGACCACGG 60.039 55.000 4.48 0.00 44.46 4.94
12 13 1.334054 CTCTTAAACGGACGACCACG 58.666 55.000 4.48 0.00 45.75 4.94
13 14 1.066136 GCTCTTAAACGGACGACCAC 58.934 55.000 4.48 0.00 35.59 4.16
14 15 0.675083 TGCTCTTAAACGGACGACCA 59.325 50.000 4.48 0.00 35.59 4.02
15 16 1.066136 GTGCTCTTAAACGGACGACC 58.934 55.000 0.00 0.00 0.00 4.79
16 17 1.719780 CTGTGCTCTTAAACGGACGAC 59.280 52.381 0.00 0.00 0.00 4.34
17 18 1.336517 CCTGTGCTCTTAAACGGACGA 60.337 52.381 0.00 0.00 0.00 4.20
18 19 1.068474 CCTGTGCTCTTAAACGGACG 58.932 55.000 0.00 0.00 0.00 4.79
19 20 2.450609 TCCTGTGCTCTTAAACGGAC 57.549 50.000 0.00 0.00 0.00 4.79
20 21 2.367567 ACTTCCTGTGCTCTTAAACGGA 59.632 45.455 0.00 0.00 0.00 4.69
21 22 2.767505 ACTTCCTGTGCTCTTAAACGG 58.232 47.619 0.00 0.00 0.00 4.44
22 23 4.150098 GTGTACTTCCTGTGCTCTTAAACG 59.850 45.833 0.00 0.00 32.31 3.60
23 24 5.054477 TGTGTACTTCCTGTGCTCTTAAAC 58.946 41.667 0.00 0.00 32.31 2.01
24 25 5.284861 TGTGTACTTCCTGTGCTCTTAAA 57.715 39.130 0.00 0.00 32.31 1.52
25 26 4.262463 CCTGTGTACTTCCTGTGCTCTTAA 60.262 45.833 0.00 0.00 32.31 1.85
26 27 3.258372 CCTGTGTACTTCCTGTGCTCTTA 59.742 47.826 0.00 0.00 32.31 2.10
27 28 2.037772 CCTGTGTACTTCCTGTGCTCTT 59.962 50.000 0.00 0.00 32.31 2.85
28 29 1.620819 CCTGTGTACTTCCTGTGCTCT 59.379 52.381 0.00 0.00 32.31 4.09
29 30 1.941668 GCCTGTGTACTTCCTGTGCTC 60.942 57.143 0.00 0.00 32.31 4.26
30 31 0.035458 GCCTGTGTACTTCCTGTGCT 59.965 55.000 0.00 0.00 32.31 4.40
31 32 0.250295 TGCCTGTGTACTTCCTGTGC 60.250 55.000 0.00 0.00 0.00 4.57
32 33 2.479566 ATGCCTGTGTACTTCCTGTG 57.520 50.000 0.00 0.00 0.00 3.66
33 34 5.950544 TTATATGCCTGTGTACTTCCTGT 57.049 39.130 0.00 0.00 0.00 4.00
34 35 7.807977 ATTTTATATGCCTGTGTACTTCCTG 57.192 36.000 0.00 0.00 0.00 3.86
35 36 7.834181 ACAATTTTATATGCCTGTGTACTTCCT 59.166 33.333 0.00 0.00 0.00 3.36
36 37 7.996385 ACAATTTTATATGCCTGTGTACTTCC 58.004 34.615 0.00 0.00 0.00 3.46
42 43 9.988815 TTTGTTTACAATTTTATATGCCTGTGT 57.011 25.926 0.00 0.00 35.55 3.72
60 61 7.096230 CCGAACTGGATTCAATGTTTTGTTTAC 60.096 37.037 0.00 0.00 42.00 2.01
61 62 6.920758 CCGAACTGGATTCAATGTTTTGTTTA 59.079 34.615 0.00 0.00 42.00 2.01
69 70 2.086869 CTGCCGAACTGGATTCAATGT 58.913 47.619 0.00 0.00 42.00 2.71
118 119 1.544691 ACGTGCAAATACGACTCCTCT 59.455 47.619 5.23 0.00 46.46 3.69
120 121 2.450609 AACGTGCAAATACGACTCCT 57.549 45.000 5.23 0.00 46.46 3.69
134 135 2.404265 TCAAATCAGCAGCAAACGTG 57.596 45.000 0.00 0.00 0.00 4.49
136 137 3.982701 TCAAATCAAATCAGCAGCAAACG 59.017 39.130 0.00 0.00 0.00 3.60
137 138 5.910637 TTCAAATCAAATCAGCAGCAAAC 57.089 34.783 0.00 0.00 0.00 2.93
138 139 5.816258 TGTTTCAAATCAAATCAGCAGCAAA 59.184 32.000 0.00 0.00 0.00 3.68
139 140 5.358090 TGTTTCAAATCAAATCAGCAGCAA 58.642 33.333 0.00 0.00 0.00 3.91
140 141 4.946445 TGTTTCAAATCAAATCAGCAGCA 58.054 34.783 0.00 0.00 0.00 4.41
141 142 4.986659 ACTGTTTCAAATCAAATCAGCAGC 59.013 37.500 0.00 0.00 0.00 5.25
142 143 6.307318 GCTACTGTTTCAAATCAAATCAGCAG 59.693 38.462 0.00 0.00 0.00 4.24
143 144 6.151691 GCTACTGTTTCAAATCAAATCAGCA 58.848 36.000 0.00 0.00 0.00 4.41
144 145 6.151691 TGCTACTGTTTCAAATCAAATCAGC 58.848 36.000 0.00 0.00 0.00 4.26
145 146 7.365741 ACTGCTACTGTTTCAAATCAAATCAG 58.634 34.615 0.00 0.00 0.00 2.90
158 173 4.589374 ACAAGGAGACTACTGCTACTGTTT 59.411 41.667 0.00 0.00 43.77 2.83
172 187 9.575783 TGTGTGTTTTAATTTTAACAAGGAGAC 57.424 29.630 6.63 0.00 36.15 3.36
176 191 8.555361 CCCATGTGTGTTTTAATTTTAACAAGG 58.445 33.333 6.63 0.00 36.15 3.61
216 233 9.269453 GGTAGAGAGAGAGAGAGAGTTTAATAC 57.731 40.741 0.00 0.00 0.00 1.89
238 255 2.125673 CACCCACGGAAGCGGTAG 60.126 66.667 0.00 0.00 35.48 3.18
247 264 0.179073 CTGCTAATCTCCACCCACGG 60.179 60.000 0.00 0.00 0.00 4.94
248 265 0.179073 CCTGCTAATCTCCACCCACG 60.179 60.000 0.00 0.00 0.00 4.94
357 407 5.511888 GGAGGCAGTAGACTACTCCTACTAG 60.512 52.000 23.25 10.81 43.43 2.57
358 408 4.347583 GGAGGCAGTAGACTACTCCTACTA 59.652 50.000 23.25 0.00 43.43 1.82
432 495 3.243401 GCGGAAAAGGAGAAGCAAAGAAA 60.243 43.478 0.00 0.00 0.00 2.52
437 500 0.110486 AGGCGGAAAAGGAGAAGCAA 59.890 50.000 0.00 0.00 0.00 3.91
438 501 0.321653 GAGGCGGAAAAGGAGAAGCA 60.322 55.000 0.00 0.00 0.00 3.91
439 502 1.027255 GGAGGCGGAAAAGGAGAAGC 61.027 60.000 0.00 0.00 0.00 3.86
441 504 0.036306 GTGGAGGCGGAAAAGGAGAA 59.964 55.000 0.00 0.00 0.00 2.87
442 505 0.836400 AGTGGAGGCGGAAAAGGAGA 60.836 55.000 0.00 0.00 0.00 3.71
981 1044 1.622811 GCTACAGGAGGAGGATGATGG 59.377 57.143 0.00 0.00 0.00 3.51
982 1045 1.622811 GGCTACAGGAGGAGGATGATG 59.377 57.143 0.00 0.00 0.00 3.07
983 1046 1.825242 CGGCTACAGGAGGAGGATGAT 60.825 57.143 0.00 0.00 0.00 2.45
984 1047 0.468214 CGGCTACAGGAGGAGGATGA 60.468 60.000 0.00 0.00 0.00 2.92
1051 1114 2.826738 ACGAGAGGAGAGGCGAGC 60.827 66.667 0.00 0.00 0.00 5.03
1062 1125 4.261801 AGAGAAGGAAGAAGAGACGAGAG 58.738 47.826 0.00 0.00 0.00 3.20
1066 1129 4.700213 AGAGAAGAGAAGGAAGAAGAGACG 59.300 45.833 0.00 0.00 0.00 4.18
1067 1130 6.434340 AGAAGAGAAGAGAAGGAAGAAGAGAC 59.566 42.308 0.00 0.00 0.00 3.36
1068 1131 6.552008 AGAAGAGAAGAGAAGGAAGAAGAGA 58.448 40.000 0.00 0.00 0.00 3.10
1069 1132 6.840780 AGAAGAGAAGAGAAGGAAGAAGAG 57.159 41.667 0.00 0.00 0.00 2.85
1072 1135 6.320164 CCGATAGAAGAGAAGAGAAGGAAGAA 59.680 42.308 0.00 0.00 39.76 2.52
1114 1179 4.773117 GCGTCTGACCGACCGACC 62.773 72.222 1.55 0.00 39.56 4.79
1143 1208 4.660938 ACCAAACCCCCGAGCTGC 62.661 66.667 0.00 0.00 0.00 5.25
1161 1226 3.941188 ACCACCAGACCGCACCAG 61.941 66.667 0.00 0.00 0.00 4.00
1167 1232 3.605749 AATCGCCACCACCAGACCG 62.606 63.158 0.00 0.00 0.00 4.79
1297 1372 0.106519 AGGATTGAATGCCCCGGAAG 60.107 55.000 0.73 0.00 0.00 3.46
1349 1424 3.345808 GAAACAGCTGTCGCCGCA 61.346 61.111 21.95 0.00 36.60 5.69
1361 1448 1.300620 CAGCGTGGTCGAGGAAACA 60.301 57.895 0.00 0.00 39.71 2.83
1565 1670 3.866582 CTGTCGAGCCCCATCCCC 61.867 72.222 0.00 0.00 0.00 4.81
1814 1922 1.068588 CTGACGTTGAACTGGTCCTGA 59.931 52.381 2.23 0.00 0.00 3.86
1915 2023 0.396060 GGGAGCAGAGCAAGATAGGG 59.604 60.000 0.00 0.00 0.00 3.53
1916 2024 0.396060 GGGGAGCAGAGCAAGATAGG 59.604 60.000 0.00 0.00 0.00 2.57
1929 2053 2.190578 CCATGGAAGACGGGGAGC 59.809 66.667 5.56 0.00 0.00 4.70
1931 2055 3.781307 CGCCATGGAAGACGGGGA 61.781 66.667 18.40 0.00 34.82 4.81
1932 2056 4.856801 CCGCCATGGAAGACGGGG 62.857 72.222 18.40 0.39 41.95 5.73
1963 2090 4.586421 AGGGTTAGTTAGTACTAATCGGCC 59.414 45.833 18.03 16.28 45.16 6.13
2307 2435 1.017387 GTGGGATAGGAAAGCAAGCG 58.983 55.000 0.00 0.00 0.00 4.68
2502 2647 9.466497 AATCATTCACTGTCAGTGGTAAAATAT 57.534 29.630 28.47 12.82 45.94 1.28
2555 2703 5.765182 AGAATCCAAAGACACTAACAAGTGG 59.235 40.000 10.08 0.00 43.59 4.00
2580 2731 5.738909 ACAATTGTTCCTCATCAGAGTAGG 58.261 41.667 4.92 0.00 40.40 3.18
2762 2913 2.681848 CTCGGACTTGTACACGGAGTAT 59.318 50.000 4.21 0.00 41.61 2.12
2793 2944 2.588314 CTCCTGCAGCCTCGCATC 60.588 66.667 8.66 0.00 42.06 3.91
3067 3226 1.001974 AGTTGAGCGTGCTGTTATGGA 59.998 47.619 0.00 0.00 0.00 3.41
3145 3304 3.525800 ACTGCAGGGTTGATAAAAGGT 57.474 42.857 19.93 0.00 0.00 3.50
3178 3337 1.621814 ACACATGGGCAGTACTACGTT 59.378 47.619 0.00 0.00 0.00 3.99
3205 3364 6.126883 TGTGTTTTACAGAGAAGAAGGGAGAA 60.127 38.462 0.00 0.00 33.42 2.87
3233 3392 8.498054 AAGAGGAATATGTCACATTAACAGTG 57.502 34.615 0.00 4.00 38.32 3.66
3630 3806 5.714047 CTTAAATCCCTTCAGCCAGAAAAC 58.286 41.667 0.00 0.00 35.40 2.43
3638 3814 4.440663 GGTGATTGCTTAAATCCCTTCAGC 60.441 45.833 0.00 0.00 43.61 4.26
3752 3928 5.422145 TCGTTTATAAGGGACACTAAAGCC 58.578 41.667 0.00 0.00 0.00 4.35
3767 3943 5.357257 GCCTGATCAAGAACCTCGTTTATA 58.643 41.667 0.00 0.00 0.00 0.98
3773 3949 0.173481 TCGCCTGATCAAGAACCTCG 59.827 55.000 0.00 0.00 0.00 4.63
3833 4009 6.258947 TGTCATCACAGACTAGTCTAAGATCG 59.741 42.308 24.75 20.23 37.98 3.69
4001 4182 0.723414 CATACACTGCCAACTGCTCG 59.277 55.000 0.00 0.00 42.00 5.03
4052 4233 1.048601 GCCTCATTCTACCCGGATCA 58.951 55.000 0.73 0.00 0.00 2.92
4184 4368 4.481930 TCAGCCAACAAATAACAGAACG 57.518 40.909 0.00 0.00 0.00 3.95
4340 4524 3.194968 TGTTAGCTACCTTGTAGCCACTC 59.805 47.826 19.60 10.45 41.25 3.51
4350 4534 4.717280 ACTATGCCTTCTGTTAGCTACCTT 59.283 41.667 0.00 0.00 0.00 3.50
4388 4572 5.957796 CGAGTGTAAATCCGTATTGAAAAGC 59.042 40.000 0.00 0.00 0.00 3.51
4422 4606 0.179006 GGCAGGATAGGAGCAAAGGG 60.179 60.000 0.00 0.00 0.00 3.95
4433 4617 7.345691 TCAATCTTATTGTTTCAGGCAGGATA 58.654 34.615 0.00 0.00 0.00 2.59
4568 4752 1.808945 CTGATGCTTAATCCGATGCCC 59.191 52.381 0.00 0.00 34.00 5.36
5195 5379 4.035441 GCCACTTTAAGGTTCACAACGTTA 59.965 41.667 0.00 0.00 39.82 3.18
5736 5923 0.251474 AATGCCATGAGCTGTGTGGT 60.251 50.000 0.00 0.00 44.23 4.16
5758 5945 1.593196 CTTCAACAAACTCCTCCGCA 58.407 50.000 0.00 0.00 0.00 5.69
5814 6001 2.815357 TGCAGATAGGAGGGGGTAAT 57.185 50.000 0.00 0.00 0.00 1.89
5817 6004 0.474660 GGATGCAGATAGGAGGGGGT 60.475 60.000 0.00 0.00 0.00 4.95
5818 6005 0.474466 TGGATGCAGATAGGAGGGGG 60.474 60.000 0.00 0.00 0.00 5.40
5819 6006 1.281287 CATGGATGCAGATAGGAGGGG 59.719 57.143 0.00 0.00 0.00 4.79
5869 6056 4.584325 TCACATTTTCTTTTGCCTAGCAGT 59.416 37.500 0.00 0.00 40.61 4.40
5873 6060 7.259882 TGCATATCACATTTTCTTTTGCCTAG 58.740 34.615 0.00 0.00 0.00 3.02
6051 6242 4.111577 ACATTAGACCAGGAGGATTCCAA 58.888 43.478 5.29 0.00 46.64 3.53
6121 6312 1.450312 GAGCCTGGTGGTTCCATCG 60.450 63.158 0.00 0.00 46.12 3.84
6124 6315 1.352622 AACAGAGCCTGGTGGTTCCA 61.353 55.000 7.06 0.00 43.54 3.53
6125 6316 0.178990 AAACAGAGCCTGGTGGTTCC 60.179 55.000 7.06 0.00 43.54 3.62
6126 6317 1.202818 AGAAACAGAGCCTGGTGGTTC 60.203 52.381 5.64 5.64 42.94 3.62
6128 6319 0.846693 AAGAAACAGAGCCTGGTGGT 59.153 50.000 7.06 0.00 35.51 4.16
6129 6320 1.242076 CAAGAAACAGAGCCTGGTGG 58.758 55.000 7.06 0.00 35.51 4.61
6130 6321 1.242076 CCAAGAAACAGAGCCTGGTG 58.758 55.000 7.06 0.00 35.51 4.17
6131 6322 0.846693 ACCAAGAAACAGAGCCTGGT 59.153 50.000 7.06 0.00 35.51 4.00
6204 6395 0.527385 ACAAAATGCCACACGTGCAC 60.527 50.000 17.22 6.82 42.38 4.57
6213 6404 3.132646 AGAAGTTGCTGAACAAAATGCCA 59.867 39.130 0.00 0.00 40.82 4.92
6238 6429 1.008329 TTTTTCGCGTGAACCGTCTT 58.992 45.000 11.68 0.00 39.32 3.01
6259 6450 2.696759 GCGTATGCGGTTGGCCTTT 61.697 57.895 3.32 0.00 42.61 3.11
6260 6451 3.131478 GCGTATGCGGTTGGCCTT 61.131 61.111 3.32 0.00 42.61 4.35
6282 6473 1.004440 GGTCGAGCTGAAACCTGCT 60.004 57.895 7.51 0.00 40.78 4.24
6303 6494 1.349688 ACATTACAAAGGCGGAGGACA 59.650 47.619 0.00 0.00 0.00 4.02
6335 6526 5.658634 GGAAGGAAAATTTTGCTCTCCCTAT 59.341 40.000 23.08 7.70 37.91 2.57
6402 6596 1.786937 ATTCCTGCACAAACCACCAA 58.213 45.000 0.00 0.00 0.00 3.67
6505 6700 4.153835 CACCAGCTGAGAGATCAAGAAAAC 59.846 45.833 17.39 0.00 0.00 2.43
6515 6710 1.615883 GAGAACACACCAGCTGAGAGA 59.384 52.381 17.39 0.00 0.00 3.10
6526 6721 3.809905 ACAGGAAAGAAGGAGAACACAC 58.190 45.455 0.00 0.00 0.00 3.82
6535 6730 1.003696 GGACAGGGACAGGAAAGAAGG 59.996 57.143 0.00 0.00 0.00 3.46
6605 6800 7.020827 AGAGAAGAGAAGAGAAGAGAAGAGA 57.979 40.000 0.00 0.00 0.00 3.10
6606 6801 7.148171 GGAAGAGAAGAGAAGAGAAGAGAAGAG 60.148 44.444 0.00 0.00 0.00 2.85
6607 6802 6.659242 GGAAGAGAAGAGAAGAGAAGAGAAGA 59.341 42.308 0.00 0.00 0.00 2.87
6608 6803 6.127619 GGGAAGAGAAGAGAAGAGAAGAGAAG 60.128 46.154 0.00 0.00 0.00 2.85
6609 6804 5.714806 GGGAAGAGAAGAGAAGAGAAGAGAA 59.285 44.000 0.00 0.00 0.00 2.87
6610 6805 5.222233 TGGGAAGAGAAGAGAAGAGAAGAGA 60.222 44.000 0.00 0.00 0.00 3.10
6760 6973 1.073763 AGCAGTTAGGTGCCATGACAA 59.926 47.619 0.00 0.00 45.20 3.18
6836 7049 2.570302 ACCACCACGATTAGTTTAGCCT 59.430 45.455 0.00 0.00 0.00 4.58
6850 7063 1.323412 TACACCATTGCAACCACCAC 58.677 50.000 0.00 0.00 0.00 4.16
6880 7093 2.253452 GCAACGCTGGAGCAAGTG 59.747 61.111 0.00 0.00 42.21 3.16
6887 7100 2.594303 CACAAGGGCAACGCTGGA 60.594 61.111 0.00 0.00 37.60 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.