Multiple sequence alignment - TraesCS3D01G426500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G426500 chr3D 100.000 5236 0 0 1 5236 539672237 539667002 0.000000e+00 9670.0
1 TraesCS3D01G426500 chr3D 92.279 2707 171 21 1295 3974 284991668 284994363 0.000000e+00 3807.0
2 TraesCS3D01G426500 chr3D 92.292 2400 167 12 1586 3982 361771436 361773820 0.000000e+00 3391.0
3 TraesCS3D01G426500 chr3D 89.461 1727 129 16 2259 3982 21605456 21607132 0.000000e+00 2132.0
4 TraesCS3D01G426500 chr3D 97.538 975 13 5 1 973 495738827 495739792 0.000000e+00 1657.0
5 TraesCS3D01G426500 chr3D 85.160 721 47 32 308 987 539554194 539553493 0.000000e+00 684.0
6 TraesCS3D01G426500 chr3D 90.659 364 27 7 3627 3985 2538888 2538527 1.320000e-130 477.0
7 TraesCS3D01G426500 chr3D 81.687 486 52 18 4764 5232 539375091 539374626 2.300000e-98 370.0
8 TraesCS3D01G426500 chr3D 91.791 268 19 3 4933 5198 539551218 539550952 2.300000e-98 370.0
9 TraesCS3D01G426500 chr3D 84.365 307 36 8 4941 5236 539865517 539865212 1.840000e-74 291.0
10 TraesCS3D01G426500 chr3D 84.740 308 21 15 18 311 539554557 539554262 8.580000e-73 285.0
11 TraesCS3D01G426500 chr3D 84.362 243 35 3 4490 4731 539865900 539865660 8.770000e-58 235.0
12 TraesCS3D01G426500 chr3D 75.765 425 44 23 4212 4628 539377332 539376959 5.430000e-35 159.0
13 TraesCS3D01G426500 chr3D 89.565 115 8 4 4234 4346 539553230 539553118 5.470000e-30 143.0
14 TraesCS3D01G426500 chr3D 98.485 66 1 0 1078 1143 495741598 495741663 3.310000e-22 117.0
15 TraesCS3D01G426500 chr1D 91.979 2693 198 13 1299 3982 93505512 93502829 0.000000e+00 3760.0
16 TraesCS3D01G426500 chr1D 91.556 2712 187 17 1298 3981 414344611 414347308 0.000000e+00 3701.0
17 TraesCS3D01G426500 chr1D 93.030 2396 151 11 1297 3686 146495733 146498118 0.000000e+00 3485.0
18 TraesCS3D01G426500 chr5D 91.639 2739 175 24 1295 3984 410084006 410086739 0.000000e+00 3740.0
19 TraesCS3D01G426500 chr5D 90.632 2626 197 34 1299 3915 357442431 357439846 0.000000e+00 3441.0
20 TraesCS3D01G426500 chr5D 92.714 2388 152 15 1306 3686 407959272 407961644 0.000000e+00 3426.0
21 TraesCS3D01G426500 chr5D 91.720 471 34 4 3522 3987 465912363 465911893 0.000000e+00 649.0
22 TraesCS3D01G426500 chr2A 91.636 2690 210 13 1299 3980 672127315 672124633 0.000000e+00 3707.0
23 TraesCS3D01G426500 chr2A 87.108 574 70 4 1297 1869 724104078 724104648 0.000000e+00 647.0
24 TraesCS3D01G426500 chr7D 91.994 2136 139 16 1873 3985 47058441 47056315 0.000000e+00 2968.0
25 TraesCS3D01G426500 chr7D 88.946 588 52 7 3398 3983 125782929 125783505 0.000000e+00 713.0
26 TraesCS3D01G426500 chr3B 83.487 975 108 25 4276 5236 715066923 715065988 0.000000e+00 859.0
27 TraesCS3D01G426500 chr3B 80.594 505 62 13 4749 5232 715039584 715039095 1.790000e-94 357.0
28 TraesCS3D01G426500 chr3B 90.763 249 22 1 4984 5231 715257741 715257493 1.090000e-86 331.0
29 TraesCS3D01G426500 chr3B 87.072 263 18 6 18 267 715311992 715311733 3.090000e-72 283.0
30 TraesCS3D01G426500 chr3B 82.736 307 41 5 4941 5236 715735104 715734799 4.020000e-66 263.0
31 TraesCS3D01G426500 chr3B 84.874 238 32 4 4495 4731 715735475 715735241 2.440000e-58 237.0
32 TraesCS3D01G426500 chr3B 95.122 123 6 0 112 234 715069926 715069804 1.490000e-45 195.0
33 TraesCS3D01G426500 chr3B 86.667 150 14 4 462 610 715069395 715069251 1.510000e-35 161.0
34 TraesCS3D01G426500 chr3B 88.525 122 7 4 4482 4603 715262520 715262406 1.970000e-29 141.0
35 TraesCS3D01G426500 chr3B 92.553 94 7 0 18 111 715071246 715071153 9.150000e-28 135.0
36 TraesCS3D01G426500 chr3B 89.720 107 6 2 894 1000 715263815 715263714 1.180000e-26 132.0
37 TraesCS3D01G426500 chr3B 78.161 174 13 9 684 855 715069189 715069039 2.600000e-13 87.9
38 TraesCS3D01G426500 chr3A 87.738 473 52 6 4769 5236 674571168 674570697 9.910000e-152 547.0
39 TraesCS3D01G426500 chr3A 86.400 250 21 6 18 263 674584426 674584186 1.450000e-65 261.0
40 TraesCS3D01G426500 chr3A 77.199 557 53 32 4234 4772 674571941 674571441 1.870000e-64 257.0
41 TraesCS3D01G426500 chr3A 84.274 248 24 12 481 721 674572859 674572620 1.470000e-55 228.0
42 TraesCS3D01G426500 chr3A 89.362 94 7 3 714 806 674492249 674492158 1.190000e-21 115.0
43 TraesCS3D01G426500 chr3A 84.946 93 8 3 752 844 674572618 674572532 7.220000e-14 89.8
44 TraesCS3D01G426500 chr5B 91.379 58 2 1 1023 1077 36733434 36733377 5.620000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G426500 chr3D 539667002 539672237 5235 True 9670.00 9670 100.00000 1 5236 1 chr3D.!!$R2 5235
1 TraesCS3D01G426500 chr3D 284991668 284994363 2695 False 3807.00 3807 92.27900 1295 3974 1 chr3D.!!$F2 2679
2 TraesCS3D01G426500 chr3D 361771436 361773820 2384 False 3391.00 3391 92.29200 1586 3982 1 chr3D.!!$F3 2396
3 TraesCS3D01G426500 chr3D 21605456 21607132 1676 False 2132.00 2132 89.46100 2259 3982 1 chr3D.!!$F1 1723
4 TraesCS3D01G426500 chr3D 495738827 495741663 2836 False 887.00 1657 98.01150 1 1143 2 chr3D.!!$F4 1142
5 TraesCS3D01G426500 chr3D 539550952 539554557 3605 True 370.50 684 87.81400 18 5198 4 chr3D.!!$R4 5180
6 TraesCS3D01G426500 chr3D 539374626 539377332 2706 True 264.50 370 78.72600 4212 5232 2 chr3D.!!$R3 1020
7 TraesCS3D01G426500 chr3D 539865212 539865900 688 True 263.00 291 84.36350 4490 5236 2 chr3D.!!$R5 746
8 TraesCS3D01G426500 chr1D 93502829 93505512 2683 True 3760.00 3760 91.97900 1299 3982 1 chr1D.!!$R1 2683
9 TraesCS3D01G426500 chr1D 414344611 414347308 2697 False 3701.00 3701 91.55600 1298 3981 1 chr1D.!!$F2 2683
10 TraesCS3D01G426500 chr1D 146495733 146498118 2385 False 3485.00 3485 93.03000 1297 3686 1 chr1D.!!$F1 2389
11 TraesCS3D01G426500 chr5D 410084006 410086739 2733 False 3740.00 3740 91.63900 1295 3984 1 chr5D.!!$F2 2689
12 TraesCS3D01G426500 chr5D 357439846 357442431 2585 True 3441.00 3441 90.63200 1299 3915 1 chr5D.!!$R1 2616
13 TraesCS3D01G426500 chr5D 407959272 407961644 2372 False 3426.00 3426 92.71400 1306 3686 1 chr5D.!!$F1 2380
14 TraesCS3D01G426500 chr2A 672124633 672127315 2682 True 3707.00 3707 91.63600 1299 3980 1 chr2A.!!$R1 2681
15 TraesCS3D01G426500 chr2A 724104078 724104648 570 False 647.00 647 87.10800 1297 1869 1 chr2A.!!$F1 572
16 TraesCS3D01G426500 chr7D 47056315 47058441 2126 True 2968.00 2968 91.99400 1873 3985 1 chr7D.!!$R1 2112
17 TraesCS3D01G426500 chr7D 125782929 125783505 576 False 713.00 713 88.94600 3398 3983 1 chr7D.!!$F1 585
18 TraesCS3D01G426500 chr3B 715065988 715071246 5258 True 287.58 859 87.19800 18 5236 5 chr3B.!!$R4 5218
19 TraesCS3D01G426500 chr3B 715734799 715735475 676 True 250.00 263 83.80500 4495 5236 2 chr3B.!!$R6 741
20 TraesCS3D01G426500 chr3A 674570697 674572859 2162 True 280.45 547 83.53925 481 5236 4 chr3A.!!$R3 4755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
688 2346 0.772124 AGGGAGAGGAAAAGGTGGCA 60.772 55.0 0.00 0.00 0.00 4.92 F
1742 5912 0.036388 GGAGATCGCCAAGTTGGACA 60.036 55.0 26.52 10.84 40.96 4.02 F
2434 7087 0.107993 ATGGTGACTCGTGGCATGAG 60.108 55.0 30.23 30.23 37.27 2.90 F
3161 7822 0.251787 GGGGCAAGACCAACTCCAAT 60.252 55.0 0.00 0.00 42.05 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2338 6577 0.037232 CCTGACTTTGGGTCTCGTCC 60.037 60.0 0.0 0.0 44.74 4.79 R
2872 7529 0.322546 CCGTAGCAAGGAAAAGGGCT 60.323 55.0 0.0 0.0 40.26 5.19 R
4031 9285 0.036952 AGGTCACAGGCGTTGATCAG 60.037 55.0 0.0 0.0 0.00 2.90 R
4601 9989 0.252558 GTGTCCTTAGGGGAGTGGGA 60.253 60.0 0.0 0.0 46.10 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 78 7.041372 CGTCTTATCTTGTTTTTCCTTCCTTGA 60.041 37.037 0.00 0.00 0.00 3.02
352 1977 1.968017 CACCATGCAGTGCGAACCT 60.968 57.895 11.20 0.00 0.00 3.50
638 2295 1.743958 CTTCTCTCCGCCGTCTCTTTA 59.256 52.381 0.00 0.00 0.00 1.85
688 2346 0.772124 AGGGAGAGGAAAAGGTGGCA 60.772 55.000 0.00 0.00 0.00 4.92
713 2377 2.305635 TCCTACCTGTGTGCATGACATT 59.694 45.455 0.00 0.00 36.78 2.71
733 2397 1.752498 TGACATGATGGATGCAAAGCC 59.248 47.619 0.00 0.00 35.15 4.35
874 2542 6.590677 CACCATCATCTAGTAGCATGAATCTG 59.409 42.308 13.05 8.99 32.76 2.90
875 2543 6.496218 ACCATCATCTAGTAGCATGAATCTGA 59.504 38.462 13.05 0.00 32.76 3.27
876 2544 7.036829 CCATCATCTAGTAGCATGAATCTGAG 58.963 42.308 13.05 0.00 32.76 3.35
1004 4449 3.869912 GCCAACCTAGCAGATGACTTCAA 60.870 47.826 0.00 0.00 0.00 2.69
1015 4460 2.370281 TGACTTCAACTCCATCGCTC 57.630 50.000 0.00 0.00 0.00 5.03
1020 4465 4.135153 AACTCCATCGCTCGCGCT 62.135 61.111 5.56 0.00 39.59 5.92
1021 4466 2.771639 AACTCCATCGCTCGCGCTA 61.772 57.895 5.56 0.00 39.59 4.26
1023 4468 3.187699 CTCCATCGCTCGCGCTAGT 62.188 63.158 10.92 0.00 39.59 2.57
1024 4469 2.278857 CCATCGCTCGCGCTAGTT 60.279 61.111 10.92 0.00 39.59 2.24
1025 4470 1.878522 CCATCGCTCGCGCTAGTTT 60.879 57.895 10.92 0.00 39.59 2.66
1026 4471 1.421410 CCATCGCTCGCGCTAGTTTT 61.421 55.000 10.92 0.00 39.59 2.43
1027 4472 0.370273 CATCGCTCGCGCTAGTTTTT 59.630 50.000 10.92 0.00 39.59 1.94
1049 4494 5.776173 TTTTTCAAAACGGAGGCATAAGA 57.224 34.783 0.00 0.00 0.00 2.10
1051 4496 5.975693 TTTCAAAACGGAGGCATAAGATT 57.024 34.783 0.00 0.00 0.00 2.40
1052 4497 5.975693 TTCAAAACGGAGGCATAAGATTT 57.024 34.783 0.00 0.00 0.00 2.17
1053 4498 5.309323 TCAAAACGGAGGCATAAGATTTG 57.691 39.130 3.17 3.17 0.00 2.32
1054 4499 5.007034 TCAAAACGGAGGCATAAGATTTGA 58.993 37.500 6.81 6.81 34.56 2.69
1055 4500 4.965119 AAACGGAGGCATAAGATTTGAC 57.035 40.909 0.00 0.00 0.00 3.18
1056 4501 3.914426 ACGGAGGCATAAGATTTGACT 57.086 42.857 0.00 0.00 34.29 3.41
1057 4502 3.798202 ACGGAGGCATAAGATTTGACTC 58.202 45.455 0.00 0.00 46.60 3.36
1064 4509 8.845413 GAGGCATAAGATTTGACTCATCTATT 57.155 34.615 1.71 0.00 46.57 1.73
1065 4510 9.935241 GAGGCATAAGATTTGACTCATCTATTA 57.065 33.333 1.71 0.00 46.57 0.98
1143 4588 2.421775 CCATGTTTTGCGCCTGTGTATA 59.578 45.455 4.18 0.00 0.00 1.47
1144 4589 3.487376 CCATGTTTTGCGCCTGTGTATAG 60.487 47.826 4.18 0.00 0.00 1.31
1145 4590 3.046968 TGTTTTGCGCCTGTGTATAGA 57.953 42.857 4.18 0.00 0.00 1.98
1146 4591 3.403968 TGTTTTGCGCCTGTGTATAGAA 58.596 40.909 4.18 0.00 0.00 2.10
1147 4592 4.006989 TGTTTTGCGCCTGTGTATAGAAT 58.993 39.130 4.18 0.00 0.00 2.40
1148 4593 5.179533 TGTTTTGCGCCTGTGTATAGAATA 58.820 37.500 4.18 0.00 0.00 1.75
1149 4594 5.293324 TGTTTTGCGCCTGTGTATAGAATAG 59.707 40.000 4.18 0.00 0.00 1.73
1150 4595 4.929819 TTGCGCCTGTGTATAGAATAGA 57.070 40.909 4.18 0.00 0.00 1.98
1151 4596 4.929819 TGCGCCTGTGTATAGAATAGAA 57.070 40.909 4.18 0.00 0.00 2.10
1152 4597 5.270893 TGCGCCTGTGTATAGAATAGAAA 57.729 39.130 4.18 0.00 0.00 2.52
1153 4598 5.666462 TGCGCCTGTGTATAGAATAGAAAA 58.334 37.500 4.18 0.00 0.00 2.29
1154 4599 5.753438 TGCGCCTGTGTATAGAATAGAAAAG 59.247 40.000 4.18 0.00 0.00 2.27
1155 4600 5.333416 GCGCCTGTGTATAGAATAGAAAAGC 60.333 44.000 0.00 0.00 0.00 3.51
1156 4601 5.753438 CGCCTGTGTATAGAATAGAAAAGCA 59.247 40.000 0.00 0.00 0.00 3.91
1157 4602 6.257849 CGCCTGTGTATAGAATAGAAAAGCAA 59.742 38.462 0.00 0.00 0.00 3.91
1158 4603 7.201609 CGCCTGTGTATAGAATAGAAAAGCAAA 60.202 37.037 0.00 0.00 0.00 3.68
1159 4604 8.125448 GCCTGTGTATAGAATAGAAAAGCAAAG 58.875 37.037 0.00 0.00 0.00 2.77
1160 4605 9.383519 CCTGTGTATAGAATAGAAAAGCAAAGA 57.616 33.333 0.00 0.00 0.00 2.52
1167 4612 7.326968 AGAATAGAAAAGCAAAGATACCTGC 57.673 36.000 0.00 0.00 38.91 4.85
1171 4616 3.890527 AGCAAAGATACCTGCTGGG 57.109 52.632 14.82 4.64 46.97 4.45
1172 4617 0.995024 AGCAAAGATACCTGCTGGGT 59.005 50.000 14.82 10.60 46.97 4.51
1204 4649 3.727387 CCGGTGACTGGGGAAGAT 58.273 61.111 1.45 0.00 0.00 2.40
1205 4650 1.991230 CCGGTGACTGGGGAAGATT 59.009 57.895 1.45 0.00 0.00 2.40
1206 4651 0.392998 CCGGTGACTGGGGAAGATTG 60.393 60.000 1.45 0.00 0.00 2.67
1207 4652 0.613260 CGGTGACTGGGGAAGATTGA 59.387 55.000 0.00 0.00 0.00 2.57
1209 4654 2.743183 CGGTGACTGGGGAAGATTGATC 60.743 54.545 0.00 0.00 0.00 2.92
1210 4655 2.239654 GGTGACTGGGGAAGATTGATCA 59.760 50.000 0.00 0.00 0.00 2.92
1211 4656 3.274288 GTGACTGGGGAAGATTGATCAC 58.726 50.000 0.00 0.00 0.00 3.06
1212 4657 2.239654 TGACTGGGGAAGATTGATCACC 59.760 50.000 0.00 0.00 40.99 4.02
1215 4660 1.064463 TGGGGAAGATTGATCACCAGC 60.064 52.381 0.00 0.00 45.36 4.85
1216 4661 1.064463 GGGGAAGATTGATCACCAGCA 60.064 52.381 0.00 0.00 40.29 4.41
1217 4662 2.621407 GGGGAAGATTGATCACCAGCAA 60.621 50.000 0.00 0.00 40.29 3.91
1218 4663 2.424956 GGGAAGATTGATCACCAGCAAC 59.575 50.000 0.00 0.00 0.00 4.17
1219 4664 3.084039 GGAAGATTGATCACCAGCAACA 58.916 45.455 0.00 0.00 0.00 3.33
1220 4665 3.119708 GGAAGATTGATCACCAGCAACAC 60.120 47.826 0.00 0.00 0.00 3.32
1221 4666 3.144657 AGATTGATCACCAGCAACACA 57.855 42.857 0.00 0.00 0.00 3.72
1222 4667 3.079578 AGATTGATCACCAGCAACACAG 58.920 45.455 0.00 0.00 0.00 3.66
1223 4668 0.953727 TTGATCACCAGCAACACAGC 59.046 50.000 0.00 0.00 0.00 4.40
1224 4669 0.179023 TGATCACCAGCAACACAGCA 60.179 50.000 0.00 0.00 36.85 4.41
1225 4670 0.239347 GATCACCAGCAACACAGCAC 59.761 55.000 0.00 0.00 36.85 4.40
1226 4671 1.509644 ATCACCAGCAACACAGCACG 61.510 55.000 0.00 0.00 36.85 5.34
1227 4672 3.585990 ACCAGCAACACAGCACGC 61.586 61.111 0.00 0.00 36.85 5.34
1228 4673 4.671549 CCAGCAACACAGCACGCG 62.672 66.667 3.53 3.53 36.85 6.01
1229 4674 4.671549 CAGCAACACAGCACGCGG 62.672 66.667 12.47 0.00 36.85 6.46
1244 4689 4.003788 CGGGGTGCAGACGAGGTT 62.004 66.667 0.00 0.00 0.00 3.50
1245 4690 2.047179 GGGGTGCAGACGAGGTTC 60.047 66.667 0.00 0.00 0.00 3.62
1246 4691 2.047179 GGGTGCAGACGAGGTTCC 60.047 66.667 0.00 0.00 0.00 3.62
1247 4692 2.047179 GGTGCAGACGAGGTTCCC 60.047 66.667 0.00 0.00 0.00 3.97
1248 4693 2.741092 GTGCAGACGAGGTTCCCA 59.259 61.111 0.00 0.00 0.00 4.37
1249 4694 1.668151 GTGCAGACGAGGTTCCCAC 60.668 63.158 0.00 0.00 0.00 4.61
1250 4695 1.837051 TGCAGACGAGGTTCCCACT 60.837 57.895 0.00 0.00 0.00 4.00
1251 4696 1.079750 GCAGACGAGGTTCCCACTC 60.080 63.158 0.00 0.00 0.00 3.51
1252 4697 1.536943 GCAGACGAGGTTCCCACTCT 61.537 60.000 0.00 0.00 32.83 3.24
1253 4698 0.528470 CAGACGAGGTTCCCACTCTC 59.472 60.000 0.00 0.00 32.83 3.20
1254 4699 0.112606 AGACGAGGTTCCCACTCTCA 59.887 55.000 0.00 0.00 32.83 3.27
1255 4700 1.187087 GACGAGGTTCCCACTCTCAT 58.813 55.000 0.00 0.00 32.83 2.90
1256 4701 1.550976 GACGAGGTTCCCACTCTCATT 59.449 52.381 0.00 0.00 32.83 2.57
1257 4702 1.276421 ACGAGGTTCCCACTCTCATTG 59.724 52.381 0.00 0.00 32.83 2.82
1258 4703 1.406069 CGAGGTTCCCACTCTCATTGG 60.406 57.143 0.00 0.00 32.83 3.16
1259 4704 1.909302 GAGGTTCCCACTCTCATTGGA 59.091 52.381 0.00 0.00 36.02 3.53
1260 4705 2.507471 GAGGTTCCCACTCTCATTGGAT 59.493 50.000 0.00 0.00 36.02 3.41
1261 4706 2.240667 AGGTTCCCACTCTCATTGGATG 59.759 50.000 0.00 0.00 36.02 3.51
1262 4707 2.239654 GGTTCCCACTCTCATTGGATGA 59.760 50.000 0.00 0.00 36.02 2.92
1263 4708 3.274288 GTTCCCACTCTCATTGGATGAC 58.726 50.000 0.00 0.00 36.02 3.06
1264 4709 2.550175 TCCCACTCTCATTGGATGACA 58.450 47.619 0.00 0.00 36.02 3.58
1265 4710 2.237143 TCCCACTCTCATTGGATGACAC 59.763 50.000 0.00 0.00 36.02 3.67
1266 4711 2.026915 CCCACTCTCATTGGATGACACA 60.027 50.000 0.00 0.00 36.02 3.72
1267 4712 3.559811 CCCACTCTCATTGGATGACACAA 60.560 47.826 0.00 0.00 36.02 3.33
1268 4713 4.074259 CCACTCTCATTGGATGACACAAA 58.926 43.478 0.00 0.00 36.02 2.83
1269 4714 4.155462 CCACTCTCATTGGATGACACAAAG 59.845 45.833 0.00 0.00 36.02 2.77
1270 4715 4.758674 CACTCTCATTGGATGACACAAAGT 59.241 41.667 0.00 0.00 35.06 2.66
1271 4716 4.758674 ACTCTCATTGGATGACACAAAGTG 59.241 41.667 0.00 0.00 39.75 3.16
1272 4717 3.503363 TCTCATTGGATGACACAAAGTGC 59.497 43.478 0.00 0.00 36.98 4.40
1273 4718 2.226200 TCATTGGATGACACAAAGTGCG 59.774 45.455 0.00 0.00 36.98 5.34
1274 4719 0.950836 TTGGATGACACAAAGTGCGG 59.049 50.000 0.00 0.00 36.98 5.69
1275 4720 0.888736 TGGATGACACAAAGTGCGGG 60.889 55.000 0.00 0.00 36.98 6.13
1276 4721 0.889186 GGATGACACAAAGTGCGGGT 60.889 55.000 0.00 0.00 36.98 5.28
1277 4722 0.238289 GATGACACAAAGTGCGGGTG 59.762 55.000 0.00 0.00 36.98 4.61
1278 4723 1.795170 ATGACACAAAGTGCGGGTGC 61.795 55.000 0.00 0.00 36.98 5.01
1281 4726 3.595758 ACAAAGTGCGGGTGCTGC 61.596 61.111 0.00 0.00 43.34 5.25
1341 5504 3.330720 CCTATCCGGCCCCATCCC 61.331 72.222 0.00 0.00 0.00 3.85
1429 5592 0.970937 TCCGCTTTCGACTCATCCCT 60.971 55.000 0.00 0.00 38.10 4.20
1441 5604 1.284785 CTCATCCCTGGCCCAAGTTTA 59.715 52.381 0.00 0.00 0.00 2.01
1504 5672 4.680237 CGCGTGCTTGTCCTCCCA 62.680 66.667 0.00 0.00 0.00 4.37
1546 5714 2.679996 GCAAAACCCTCCGCCCAT 60.680 61.111 0.00 0.00 0.00 4.00
1563 5733 1.292061 CATCCATTTGGCGCCATTTG 58.708 50.000 33.25 28.09 34.44 2.32
1565 5735 1.375652 CCATTTGGCGCCATTTGCA 60.376 52.632 33.25 12.81 41.33 4.08
1566 5736 1.363145 CCATTTGGCGCCATTTGCAG 61.363 55.000 33.25 16.54 41.33 4.41
1593 5763 3.834799 CCACGTCCCTCCCGCTAC 61.835 72.222 0.00 0.00 0.00 3.58
1679 5849 2.038557 CCCGGAAAGGTGAAGAAGAAGA 59.961 50.000 0.73 0.00 38.74 2.87
1680 5850 3.496160 CCCGGAAAGGTGAAGAAGAAGAA 60.496 47.826 0.73 0.00 38.74 2.52
1742 5912 0.036388 GGAGATCGCCAAGTTGGACA 60.036 55.000 26.52 10.84 40.96 4.02
1743 5913 1.610624 GGAGATCGCCAAGTTGGACAA 60.611 52.381 26.52 9.79 40.96 3.18
1795 5965 2.480555 GTCAAGGTCAATGCCGCG 59.519 61.111 0.00 0.00 0.00 6.46
2047 6272 4.278513 CCCCCACCAAGGCACGAA 62.279 66.667 0.00 0.00 35.39 3.85
2266 6505 3.999297 AACACCAACGCCACCGGTT 62.999 57.895 2.97 0.00 39.22 4.44
2280 6519 1.374252 CGGTTGACGACCCCTTCTG 60.374 63.158 6.27 0.00 46.35 3.02
2320 6559 1.327690 TGATCTACGAGGGTGGGCAC 61.328 60.000 0.00 0.00 0.00 5.01
2434 7087 0.107993 ATGGTGACTCGTGGCATGAG 60.108 55.000 30.23 30.23 37.27 2.90
2613 7267 4.815846 GGACAAGTTGATTTGCCAATGTTT 59.184 37.500 10.54 0.00 0.00 2.83
2862 7519 1.140052 CGTTGGGGACATGGTATGCTA 59.860 52.381 0.00 0.00 42.32 3.49
2869 7526 4.327680 GGGACATGGTATGCTATCCTTTC 58.672 47.826 0.00 0.00 0.00 2.62
2871 7528 4.042187 GGACATGGTATGCTATCCTTTCCT 59.958 45.833 0.00 0.00 0.00 3.36
2872 7529 5.248477 GGACATGGTATGCTATCCTTTCCTA 59.752 44.000 0.00 0.00 0.00 2.94
2874 7531 4.891992 TGGTATGCTATCCTTTCCTAGC 57.108 45.455 0.00 0.00 40.60 3.42
2912 7572 0.534412 CATGTGAGACTTCGGCCTCT 59.466 55.000 0.00 0.00 0.00 3.69
3034 7694 2.537529 CGCATTGTTGGACGATCATCAC 60.538 50.000 0.00 0.00 0.00 3.06
3037 7697 2.385013 TGTTGGACGATCATCACCAG 57.615 50.000 0.00 0.00 33.85 4.00
3076 7737 6.001460 AGGATCAATACCGTGAACTTCAAAA 58.999 36.000 0.00 0.00 0.00 2.44
3077 7738 6.488683 AGGATCAATACCGTGAACTTCAAAAA 59.511 34.615 0.00 0.00 0.00 1.94
3103 7764 2.128771 GGCAAGAAGATGGCCAAGTA 57.871 50.000 10.96 0.00 46.92 2.24
3161 7822 0.251787 GGGGCAAGACCAACTCCAAT 60.252 55.000 0.00 0.00 42.05 3.16
3174 7835 3.973206 ACTCCAATGTGGACGACATAA 57.027 42.857 3.30 0.00 45.12 1.90
3200 7861 1.386533 CCTCATCCATGGACTTGCAC 58.613 55.000 18.99 0.00 0.00 4.57
3270 8018 1.667830 CGGCAAAGCAAGGACGAGA 60.668 57.895 0.00 0.00 0.00 4.04
3350 8098 2.695666 GAGGAGGAAGATCGACATGGAA 59.304 50.000 0.00 0.00 0.00 3.53
3500 8248 1.996191 GACTTGTCCAAGATGAGCGAC 59.004 52.381 13.69 0.00 40.79 5.19
3653 8406 2.175184 CTGTGTGCCGGCGAGAAAAG 62.175 60.000 23.90 10.55 0.00 2.27
3665 8418 4.236935 GGCGAGAAAAGCATTCATTTTGA 58.763 39.130 5.24 0.00 36.08 2.69
3708 8499 5.106317 GCGAGGACAACTATTCATTTTGGAA 60.106 40.000 0.00 0.00 0.00 3.53
3713 8504 6.071952 GGACAACTATTCATTTTGGAAGCTGA 60.072 38.462 0.00 0.00 0.00 4.26
3734 8542 4.321966 TGTTGCCGGCGATGGACA 62.322 61.111 21.90 16.55 0.00 4.02
3806 8630 3.230134 ACTAGGCTTGGCATTTGAAACA 58.770 40.909 0.00 0.00 0.00 2.83
4010 9264 0.813184 CCTGCCATTTCTGCGATTGT 59.187 50.000 0.00 0.00 0.00 2.71
4012 9266 2.223340 CCTGCCATTTCTGCGATTGTAC 60.223 50.000 0.00 0.00 0.00 2.90
4021 9275 2.167487 TCTGCGATTGTACTACCATGCA 59.833 45.455 0.00 0.00 0.00 3.96
4031 9285 1.066143 ACTACCATGCACACTAGCCAC 60.066 52.381 0.00 0.00 0.00 5.01
4036 9290 1.938577 CATGCACACTAGCCACTGATC 59.061 52.381 0.00 0.00 0.00 2.92
4041 9295 1.002366 CACTAGCCACTGATCAACGC 58.998 55.000 0.00 0.00 0.00 4.84
4044 9298 0.108186 TAGCCACTGATCAACGCCTG 60.108 55.000 0.00 0.00 0.00 4.85
4047 9337 0.320683 CCACTGATCAACGCCTGTGA 60.321 55.000 11.05 0.00 35.22 3.58
4059 9349 0.179018 GCCTGTGACCTGTGTTTCCT 60.179 55.000 0.00 0.00 0.00 3.36
4091 9383 2.222027 GTACTGGCAGCACTGTTTCTT 58.778 47.619 15.89 0.00 0.00 2.52
4120 9435 5.148651 ACTGGAGTACGAACTTGCTAATT 57.851 39.130 0.00 0.00 35.56 1.40
4123 9438 7.156673 ACTGGAGTACGAACTTGCTAATTAAA 58.843 34.615 0.00 0.00 35.56 1.52
4152 9471 3.580039 TGGATGGATCACTCATCTGCTA 58.420 45.455 9.44 0.00 40.44 3.49
4153 9472 3.323115 TGGATGGATCACTCATCTGCTAC 59.677 47.826 9.44 0.00 40.44 3.58
4172 9495 1.142870 ACCCAGTTACAAGCTGCTTGA 59.857 47.619 40.04 24.36 43.42 3.02
4173 9496 2.224867 ACCCAGTTACAAGCTGCTTGAT 60.225 45.455 40.04 27.66 43.42 2.57
4174 9497 2.821969 CCCAGTTACAAGCTGCTTGATT 59.178 45.455 40.04 25.23 43.42 2.57
4175 9498 3.256631 CCCAGTTACAAGCTGCTTGATTT 59.743 43.478 40.04 24.59 43.42 2.17
4177 9500 5.291971 CCAGTTACAAGCTGCTTGATTTTT 58.708 37.500 40.04 23.94 43.42 1.94
4179 9502 5.403466 CAGTTACAAGCTGCTTGATTTTTCC 59.597 40.000 40.04 22.16 43.42 3.13
4181 9504 4.405116 ACAAGCTGCTTGATTTTTCCAA 57.595 36.364 40.04 0.00 43.42 3.53
4182 9505 4.374399 ACAAGCTGCTTGATTTTTCCAAG 58.626 39.130 40.04 16.03 43.42 3.61
4185 9508 5.027293 AGCTGCTTGATTTTTCCAAGTTT 57.973 34.783 0.00 0.00 42.11 2.66
4186 9509 5.052481 AGCTGCTTGATTTTTCCAAGTTTC 58.948 37.500 0.00 0.00 42.11 2.78
4187 9510 4.810491 GCTGCTTGATTTTTCCAAGTTTCA 59.190 37.500 0.00 0.00 42.11 2.69
4191 9514 9.211485 CTGCTTGATTTTTCCAAGTTTCATAAT 57.789 29.630 0.00 0.00 42.11 1.28
4214 9537 3.735237 AGTGCATATTACAGGAGACCG 57.265 47.619 0.00 0.00 0.00 4.79
4219 9542 4.102524 TGCATATTACAGGAGACCGGAATT 59.897 41.667 9.46 0.00 0.00 2.17
4224 9547 5.486735 TTACAGGAGACCGGAATTAAACA 57.513 39.130 9.46 0.00 0.00 2.83
4227 9550 5.321927 ACAGGAGACCGGAATTAAACAATT 58.678 37.500 9.46 0.00 0.00 2.32
4229 9552 7.116736 ACAGGAGACCGGAATTAAACAATTAT 58.883 34.615 9.46 0.00 0.00 1.28
4231 9554 9.116067 CAGGAGACCGGAATTAAACAATTATTA 57.884 33.333 9.46 0.00 0.00 0.98
4233 9556 9.117183 GGAGACCGGAATTAAACAATTATTACT 57.883 33.333 9.46 0.00 0.00 2.24
4247 9570 9.574516 AACAATTATTACTTACTGATCATCCCC 57.425 33.333 0.00 0.00 0.00 4.81
4248 9571 8.949421 ACAATTATTACTTACTGATCATCCCCT 58.051 33.333 0.00 0.00 0.00 4.79
4249 9572 9.799106 CAATTATTACTTACTGATCATCCCCTT 57.201 33.333 0.00 0.00 0.00 3.95
4251 9574 9.799106 ATTATTACTTACTGATCATCCCCTTTG 57.201 33.333 0.00 0.00 0.00 2.77
4252 9575 3.891049 ACTTACTGATCATCCCCTTTGC 58.109 45.455 0.00 0.00 0.00 3.68
4253 9576 3.525199 ACTTACTGATCATCCCCTTTGCT 59.475 43.478 0.00 0.00 0.00 3.91
4254 9577 2.725221 ACTGATCATCCCCTTTGCTC 57.275 50.000 0.00 0.00 0.00 4.26
4255 9578 1.213926 ACTGATCATCCCCTTTGCTCC 59.786 52.381 0.00 0.00 0.00 4.70
4256 9579 0.552848 TGATCATCCCCTTTGCTCCC 59.447 55.000 0.00 0.00 0.00 4.30
4257 9580 0.552848 GATCATCCCCTTTGCTCCCA 59.447 55.000 0.00 0.00 0.00 4.37
4258 9581 1.146566 GATCATCCCCTTTGCTCCCAT 59.853 52.381 0.00 0.00 0.00 4.00
4259 9582 0.259647 TCATCCCCTTTGCTCCCATG 59.740 55.000 0.00 0.00 0.00 3.66
4260 9583 1.075748 ATCCCCTTTGCTCCCATGC 60.076 57.895 0.00 0.00 0.00 4.06
4261 9584 1.877672 ATCCCCTTTGCTCCCATGCA 61.878 55.000 0.00 0.00 41.65 3.96
4262 9585 1.382146 CCCCTTTGCTCCCATGCAT 60.382 57.895 0.00 0.00 42.96 3.96
4263 9586 0.979187 CCCCTTTGCTCCCATGCATT 60.979 55.000 0.00 0.00 42.96 3.56
4264 9587 0.177141 CCCTTTGCTCCCATGCATTG 59.823 55.000 0.00 0.00 42.96 2.82
4265 9588 0.461339 CCTTTGCTCCCATGCATTGC 60.461 55.000 0.00 0.46 42.96 3.56
4266 9589 0.248012 CTTTGCTCCCATGCATTGCA 59.752 50.000 14.72 14.72 42.96 4.08
4295 9667 2.232399 TCATACCCACATGCATGCATC 58.768 47.619 30.07 0.00 33.90 3.91
4297 9675 1.682740 TACCCACATGCATGCATCAG 58.317 50.000 30.07 23.01 33.90 2.90
4316 9695 4.404654 GCCCAGCCGCGACTTTTG 62.405 66.667 8.23 0.00 0.00 2.44
4366 9747 9.720769 TTTTTACAAACAAACAAAGGTTCCATA 57.279 25.926 0.00 0.00 35.82 2.74
4370 9751 8.012957 ACAAACAAACAAAGGTTCCATACATA 57.987 30.769 0.00 0.00 35.82 2.29
4397 9778 2.732412 AGTTGATCCGTGACTCACTG 57.268 50.000 7.58 1.01 31.34 3.66
4400 9781 1.627864 TGATCCGTGACTCACTGGAA 58.372 50.000 19.81 7.95 39.18 3.53
4408 9789 3.247648 CGTGACTCACTGGAAAAATCGTT 59.752 43.478 7.58 0.00 31.34 3.85
4409 9790 4.446385 CGTGACTCACTGGAAAAATCGTTA 59.554 41.667 7.58 0.00 31.34 3.18
4410 9791 5.611844 CGTGACTCACTGGAAAAATCGTTAC 60.612 44.000 7.58 0.00 31.34 2.50
4411 9792 5.235616 GTGACTCACTGGAAAAATCGTTACA 59.764 40.000 1.58 0.00 0.00 2.41
4412 9793 5.995282 TGACTCACTGGAAAAATCGTTACAT 59.005 36.000 0.00 0.00 0.00 2.29
4413 9794 6.147164 TGACTCACTGGAAAAATCGTTACATC 59.853 38.462 0.00 0.00 0.00 3.06
4414 9795 5.995282 ACTCACTGGAAAAATCGTTACATCA 59.005 36.000 0.00 0.00 0.00 3.07
4415 9796 6.073222 ACTCACTGGAAAAATCGTTACATCAC 60.073 38.462 0.00 0.00 0.00 3.06
4437 9822 5.413833 CACTCCATGAGCTTTGTATTGTCTT 59.586 40.000 0.00 0.00 32.04 3.01
4438 9823 5.413833 ACTCCATGAGCTTTGTATTGTCTTG 59.586 40.000 0.00 0.00 32.04 3.02
4439 9824 5.316167 TCCATGAGCTTTGTATTGTCTTGT 58.684 37.500 0.00 0.00 0.00 3.16
4440 9825 5.769662 TCCATGAGCTTTGTATTGTCTTGTT 59.230 36.000 0.00 0.00 0.00 2.83
4445 9830 6.127758 TGAGCTTTGTATTGTCTTGTTGTTGT 60.128 34.615 0.00 0.00 0.00 3.32
4473 9861 2.575735 TGATTAGCTCATCACCAACCCA 59.424 45.455 6.49 0.00 0.00 4.51
4477 9865 2.481441 AGCTCATCACCAACCCATCTA 58.519 47.619 0.00 0.00 0.00 1.98
4478 9866 2.171448 AGCTCATCACCAACCCATCTAC 59.829 50.000 0.00 0.00 0.00 2.59
4479 9867 2.171448 GCTCATCACCAACCCATCTACT 59.829 50.000 0.00 0.00 0.00 2.57
4480 9868 3.742640 GCTCATCACCAACCCATCTACTC 60.743 52.174 0.00 0.00 0.00 2.59
4481 9869 3.708631 CTCATCACCAACCCATCTACTCT 59.291 47.826 0.00 0.00 0.00 3.24
4482 9870 3.706594 TCATCACCAACCCATCTACTCTC 59.293 47.826 0.00 0.00 0.00 3.20
4483 9871 2.467880 TCACCAACCCATCTACTCTCC 58.532 52.381 0.00 0.00 0.00 3.71
4484 9872 2.044492 TCACCAACCCATCTACTCTCCT 59.956 50.000 0.00 0.00 0.00 3.69
4485 9873 2.432510 CACCAACCCATCTACTCTCCTC 59.567 54.545 0.00 0.00 0.00 3.71
4486 9874 2.043227 CCAACCCATCTACTCTCCTCC 58.957 57.143 0.00 0.00 0.00 4.30
4487 9875 2.626950 CCAACCCATCTACTCTCCTCCA 60.627 54.545 0.00 0.00 0.00 3.86
4488 9876 3.107601 CAACCCATCTACTCTCCTCCAA 58.892 50.000 0.00 0.00 0.00 3.53
4503 9891 1.836166 CTCCAATCCTCCTCAGCTCAA 59.164 52.381 0.00 0.00 0.00 3.02
4505 9893 1.280133 CCAATCCTCCTCAGCTCAACA 59.720 52.381 0.00 0.00 0.00 3.33
4520 9908 1.079819 AACACAGCTCCATCGACCG 60.080 57.895 0.00 0.00 0.00 4.79
4522 9910 0.963856 ACACAGCTCCATCGACCGTA 60.964 55.000 0.00 0.00 0.00 4.02
4523 9911 0.385751 CACAGCTCCATCGACCGTAT 59.614 55.000 0.00 0.00 0.00 3.06
4613 10001 2.038329 CCACGTCCCACTCCCCTA 59.962 66.667 0.00 0.00 0.00 3.53
4614 10002 1.611261 CCACGTCCCACTCCCCTAA 60.611 63.158 0.00 0.00 0.00 2.69
4630 10018 1.940883 CTAAGGACACGTGGCGCCTA 61.941 60.000 29.70 11.59 0.00 3.93
4647 10035 3.345209 TACGCACCCACGTCGGATG 62.345 63.158 6.09 0.00 44.43 3.51
4706 10095 1.302511 GTGGCCTCCACGTTGACAT 60.303 57.895 3.32 0.00 44.95 3.06
4731 10120 3.327757 ACAGACAAGTGCTTATCCTTCCA 59.672 43.478 0.00 0.00 0.00 3.53
4732 10121 3.937706 CAGACAAGTGCTTATCCTTCCAG 59.062 47.826 0.00 0.00 0.00 3.86
4747 10151 3.473647 CAGCCCGGATGCCTCAGA 61.474 66.667 0.73 0.00 0.00 3.27
4758 11932 0.251209 TGCCTCAGAGTACTGGACGT 60.251 55.000 0.00 0.00 43.60 4.34
4759 11933 1.003928 TGCCTCAGAGTACTGGACGTA 59.996 52.381 0.00 0.00 43.60 3.57
4760 11934 1.671845 GCCTCAGAGTACTGGACGTAG 59.328 57.143 0.00 0.00 43.60 3.51
4761 11935 2.940527 GCCTCAGAGTACTGGACGTAGT 60.941 54.545 0.00 0.00 43.46 2.73
4762 11936 3.681034 GCCTCAGAGTACTGGACGTAGTA 60.681 52.174 0.00 0.00 41.70 1.82
4784 12237 7.256286 AGTATACGTTTAGGTGTTGCTCTAAG 58.744 38.462 0.00 0.00 0.00 2.18
4840 12295 3.304458 CCTTTTGTGTTCTTTCGGTAGGC 60.304 47.826 0.00 0.00 0.00 3.93
4894 12351 3.759086 GTGGATTGGAAGAAGAAGAACCC 59.241 47.826 0.00 0.00 0.00 4.11
4905 12363 1.272769 AGAAGAACCCTACGCTGTGAC 59.727 52.381 0.00 0.00 0.00 3.67
4908 12369 2.830704 GAACCCTACGCTGTGACCGG 62.831 65.000 0.00 0.00 0.00 5.28
4914 12375 0.889994 TACGCTGTGACCGGTAATGT 59.110 50.000 7.34 3.17 0.00 2.71
4979 12441 4.976116 ACTTTCTTTGATTAACTGTTGCGC 59.024 37.500 0.00 0.00 0.00 6.09
4992 12454 1.072332 TTGCGCTCCTTACAAGGCA 59.928 52.632 9.73 0.00 46.06 4.75
5089 12553 8.506437 TGAATTTCTCATGTTCATGTACTTGAC 58.494 33.333 14.48 7.44 31.38 3.18
5118 12582 9.114938 TGAGGGTAACTAGTTTAATCCCTTTTA 57.885 33.333 26.24 18.44 43.04 1.52
5182 12657 8.077991 CCATTATCTTAACATTCGCATCATTGT 58.922 33.333 0.00 0.00 0.00 2.71
5200 12675 0.037975 GTGCACTTTGGGCTCCATTG 60.038 55.000 10.32 0.00 31.53 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.268920 GAGCTTGGCACCATCCGA 59.731 61.111 0.00 0.00 0.00 4.55
73 78 4.785346 ACAAGATAAGATGACAGGGCAT 57.215 40.909 0.00 0.00 0.00 4.40
352 1977 2.108157 AAGTTGAGCGCGTCACCA 59.892 55.556 8.43 0.00 33.71 4.17
688 2346 1.544825 ATGCACACAGGTAGGACGCT 61.545 55.000 0.00 0.00 0.00 5.07
713 2377 1.752498 GGCTTTGCATCCATCATGTCA 59.248 47.619 0.00 0.00 34.56 3.58
733 2397 0.452184 ATCGGCCGTCGCTATAGATG 59.548 55.000 27.15 0.00 39.05 2.90
840 2508 4.877773 ACTAGATGATGGTGTCTCCTCTT 58.122 43.478 0.00 0.00 37.07 2.85
874 2542 1.070914 AGCTAGGCGGATAAAAGGCTC 59.929 52.381 0.00 0.00 43.27 4.70
875 2543 1.132500 AGCTAGGCGGATAAAAGGCT 58.868 50.000 0.00 0.00 45.47 4.58
876 2544 2.833631 TAGCTAGGCGGATAAAAGGC 57.166 50.000 0.00 0.00 0.00 4.35
1027 4472 5.776173 TCTTATGCCTCCGTTTTGAAAAA 57.224 34.783 0.00 0.00 0.00 1.94
1028 4473 5.975693 ATCTTATGCCTCCGTTTTGAAAA 57.024 34.783 0.00 0.00 0.00 2.29
1029 4474 5.975693 AATCTTATGCCTCCGTTTTGAAA 57.024 34.783 0.00 0.00 0.00 2.69
1031 4476 5.007034 TCAAATCTTATGCCTCCGTTTTGA 58.993 37.500 0.00 0.00 31.50 2.69
1032 4477 5.095490 GTCAAATCTTATGCCTCCGTTTTG 58.905 41.667 0.00 0.00 0.00 2.44
1033 4478 5.010282 AGTCAAATCTTATGCCTCCGTTTT 58.990 37.500 0.00 0.00 0.00 2.43
1034 4479 4.589908 AGTCAAATCTTATGCCTCCGTTT 58.410 39.130 0.00 0.00 0.00 3.60
1035 4480 4.192317 GAGTCAAATCTTATGCCTCCGTT 58.808 43.478 0.00 0.00 0.00 4.44
1036 4481 3.197766 TGAGTCAAATCTTATGCCTCCGT 59.802 43.478 0.00 0.00 0.00 4.69
1037 4482 3.797039 TGAGTCAAATCTTATGCCTCCG 58.203 45.455 0.00 0.00 0.00 4.63
1038 4483 5.619220 AGATGAGTCAAATCTTATGCCTCC 58.381 41.667 0.00 0.00 29.94 4.30
1039 4484 8.845413 AATAGATGAGTCAAATCTTATGCCTC 57.155 34.615 0.00 0.00 35.92 4.70
1054 4499 9.685828 GCGACTCTTCTTATTTAATAGATGAGT 57.314 33.333 19.79 19.79 43.61 3.41
1055 4500 9.906660 AGCGACTCTTCTTATTTAATAGATGAG 57.093 33.333 16.10 16.10 38.06 2.90
1056 4501 9.900710 GAGCGACTCTTCTTATTTAATAGATGA 57.099 33.333 0.00 0.00 0.00 2.92
1057 4502 8.845648 CGAGCGACTCTTCTTATTTAATAGATG 58.154 37.037 5.53 0.00 0.00 2.90
1058 4503 7.539366 GCGAGCGACTCTTCTTATTTAATAGAT 59.461 37.037 0.00 0.00 0.00 1.98
1059 4504 6.856938 GCGAGCGACTCTTCTTATTTAATAGA 59.143 38.462 0.00 0.00 0.00 1.98
1060 4505 6.183359 CGCGAGCGACTCTTCTTATTTAATAG 60.183 42.308 12.58 0.00 42.83 1.73
1061 4506 5.624081 CGCGAGCGACTCTTCTTATTTAATA 59.376 40.000 12.58 0.00 42.83 0.98
1062 4507 4.441415 CGCGAGCGACTCTTCTTATTTAAT 59.559 41.667 12.58 0.00 42.83 1.40
1063 4508 3.789756 CGCGAGCGACTCTTCTTATTTAA 59.210 43.478 12.58 0.00 42.83 1.52
1064 4509 3.360533 CGCGAGCGACTCTTCTTATTTA 58.639 45.455 12.58 0.00 42.83 1.40
1065 4510 2.186076 CGCGAGCGACTCTTCTTATTT 58.814 47.619 12.58 0.00 42.83 1.40
1066 4511 1.828832 CGCGAGCGACTCTTCTTATT 58.171 50.000 12.58 0.00 42.83 1.40
1067 4512 3.535691 CGCGAGCGACTCTTCTTAT 57.464 52.632 12.58 0.00 42.83 1.73
1143 4588 7.326968 GCAGGTATCTTTGCTTTTCTATTCT 57.673 36.000 0.00 0.00 37.35 2.40
1167 4612 2.202987 GATGCGAGGCTGACCCAG 60.203 66.667 0.00 0.00 36.11 4.45
1168 4613 4.147449 CGATGCGAGGCTGACCCA 62.147 66.667 0.00 0.00 36.11 4.51
1181 4626 4.838152 CCCAGTCACCGGGCGATG 62.838 72.222 6.32 0.00 36.72 3.84
1193 4638 2.240667 CTGGTGATCAATCTTCCCCAGT 59.759 50.000 14.98 0.00 0.00 4.00
1201 4646 3.079578 CTGTGTTGCTGGTGATCAATCT 58.920 45.455 0.00 0.00 0.00 2.40
1202 4647 2.415090 GCTGTGTTGCTGGTGATCAATC 60.415 50.000 0.00 0.00 0.00 2.67
1203 4648 1.542915 GCTGTGTTGCTGGTGATCAAT 59.457 47.619 0.00 0.00 0.00 2.57
1204 4649 0.953727 GCTGTGTTGCTGGTGATCAA 59.046 50.000 0.00 0.00 0.00 2.57
1205 4650 0.179023 TGCTGTGTTGCTGGTGATCA 60.179 50.000 0.00 0.00 0.00 2.92
1206 4651 0.239347 GTGCTGTGTTGCTGGTGATC 59.761 55.000 0.00 0.00 0.00 2.92
1207 4652 1.509644 CGTGCTGTGTTGCTGGTGAT 61.510 55.000 0.00 0.00 0.00 3.06
1209 4654 2.328989 CGTGCTGTGTTGCTGGTG 59.671 61.111 0.00 0.00 0.00 4.17
1210 4655 3.585990 GCGTGCTGTGTTGCTGGT 61.586 61.111 0.00 0.00 0.00 4.00
1211 4656 4.671549 CGCGTGCTGTGTTGCTGG 62.672 66.667 0.00 0.00 0.00 4.85
1212 4657 4.671549 CCGCGTGCTGTGTTGCTG 62.672 66.667 4.92 0.00 0.00 4.41
1227 4672 3.934391 GAACCTCGTCTGCACCCCG 62.934 68.421 0.00 0.00 0.00 5.73
1228 4673 2.047179 GAACCTCGTCTGCACCCC 60.047 66.667 0.00 0.00 0.00 4.95
1229 4674 2.047179 GGAACCTCGTCTGCACCC 60.047 66.667 0.00 0.00 0.00 4.61
1239 4684 5.909453 TCATCCAATGAGAGTGGGAACCTC 61.909 50.000 0.00 0.00 41.94 3.85
1240 4685 4.084051 TCATCCAATGAGAGTGGGAACCT 61.084 47.826 0.00 0.00 41.94 3.50
1241 4686 2.239654 TCATCCAATGAGAGTGGGAACC 59.760 50.000 0.00 0.00 41.82 3.62
1242 4687 3.274288 GTCATCCAATGAGAGTGGGAAC 58.726 50.000 0.00 0.00 40.53 3.62
1243 4688 2.912295 TGTCATCCAATGAGAGTGGGAA 59.088 45.455 0.00 0.00 40.53 3.97
1244 4689 2.237143 GTGTCATCCAATGAGAGTGGGA 59.763 50.000 0.00 0.00 40.53 4.37
1245 4690 2.026915 TGTGTCATCCAATGAGAGTGGG 60.027 50.000 0.00 0.00 40.53 4.61
1246 4691 3.339253 TGTGTCATCCAATGAGAGTGG 57.661 47.619 0.00 0.00 40.53 4.00
1247 4692 4.758674 ACTTTGTGTCATCCAATGAGAGTG 59.241 41.667 0.00 0.00 40.53 3.51
1248 4693 4.758674 CACTTTGTGTCATCCAATGAGAGT 59.241 41.667 0.00 0.00 40.53 3.24
1249 4694 4.379186 GCACTTTGTGTCATCCAATGAGAG 60.379 45.833 0.00 0.00 40.53 3.20
1250 4695 3.503363 GCACTTTGTGTCATCCAATGAGA 59.497 43.478 0.00 0.00 40.53 3.27
1251 4696 3.668757 CGCACTTTGTGTCATCCAATGAG 60.669 47.826 0.00 0.00 40.53 2.90
1252 4697 2.226200 CGCACTTTGTGTCATCCAATGA 59.774 45.455 0.00 0.00 35.75 2.57
1253 4698 2.587956 CGCACTTTGTGTCATCCAATG 58.412 47.619 0.00 0.00 35.75 2.82
1254 4699 1.541147 CCGCACTTTGTGTCATCCAAT 59.459 47.619 0.00 0.00 35.75 3.16
1255 4700 0.950836 CCGCACTTTGTGTCATCCAA 59.049 50.000 0.00 0.00 35.75 3.53
1256 4701 0.888736 CCCGCACTTTGTGTCATCCA 60.889 55.000 0.00 0.00 35.75 3.41
1257 4702 0.889186 ACCCGCACTTTGTGTCATCC 60.889 55.000 0.00 0.00 35.75 3.51
1258 4703 0.238289 CACCCGCACTTTGTGTCATC 59.762 55.000 0.00 0.00 35.75 2.92
1259 4704 1.795170 GCACCCGCACTTTGTGTCAT 61.795 55.000 0.00 0.00 38.36 3.06
1260 4705 2.477176 GCACCCGCACTTTGTGTCA 61.477 57.895 0.00 0.00 38.36 3.58
1261 4706 2.186826 AGCACCCGCACTTTGTGTC 61.187 57.895 0.00 0.00 42.27 3.67
1262 4707 2.124320 AGCACCCGCACTTTGTGT 60.124 55.556 0.00 0.00 42.27 3.72
1263 4708 2.332514 CAGCACCCGCACTTTGTG 59.667 61.111 0.00 0.00 42.27 3.33
1264 4709 3.595758 GCAGCACCCGCACTTTGT 61.596 61.111 0.00 0.00 42.27 2.83
1265 4710 2.922950 ATGCAGCACCCGCACTTTG 61.923 57.895 0.00 0.00 43.35 2.77
1266 4711 2.598394 ATGCAGCACCCGCACTTT 60.598 55.556 0.00 0.00 43.35 2.66
1267 4712 3.367743 CATGCAGCACCCGCACTT 61.368 61.111 0.00 0.00 43.35 3.16
1277 4722 2.869646 TGCGTACTTGCATGCAGC 59.130 55.556 21.50 20.04 40.62 5.25
1281 4726 1.062587 GCCTTACTGCGTACTTGCATG 59.937 52.381 0.00 0.00 45.26 4.06
1289 4734 0.248289 GGAGTTGGCCTTACTGCGTA 59.752 55.000 14.68 0.00 0.00 4.42
1341 5504 3.070446 GGTTTGTCCCTTTTACCCCAAAG 59.930 47.826 0.00 0.00 34.06 2.77
1429 5592 2.472414 ATCGGCGTAAACTTGGGCCA 62.472 55.000 0.00 0.00 45.85 5.36
1441 5604 0.824182 TTTCACCCCAAAATCGGCGT 60.824 50.000 6.85 0.00 0.00 5.68
1491 5658 2.356278 GCCATGGGAGGACAAGCA 59.644 61.111 15.13 0.00 0.00 3.91
1513 5681 0.749818 TTGCTTTCTGCCACCGACAA 60.750 50.000 0.00 0.00 42.00 3.18
1546 5714 1.079266 GCAAATGGCGCCAAATGGA 60.079 52.632 36.33 9.29 37.39 3.41
1563 5733 3.365265 CGTGGGAGGGTTTGCTGC 61.365 66.667 0.00 0.00 0.00 5.25
1565 5735 2.430367 GACGTGGGAGGGTTTGCT 59.570 61.111 0.00 0.00 0.00 3.91
1566 5736 2.671963 GGACGTGGGAGGGTTTGC 60.672 66.667 0.00 0.00 0.00 3.68
1742 5912 0.461961 CTCCTCTTCGCCGATTCCTT 59.538 55.000 0.00 0.00 0.00 3.36
1743 5913 1.395826 CCTCCTCTTCGCCGATTCCT 61.396 60.000 0.00 0.00 0.00 3.36
2047 6272 2.943978 CGAGAAACGGGTCTGGCCT 61.944 63.158 3.32 0.00 38.46 5.19
2169 6405 0.311790 TTGCTTTCTTTGCAGCTCGG 59.688 50.000 0.00 0.00 41.71 4.63
2174 6410 1.126079 CGTGCTTGCTTTCTTTGCAG 58.874 50.000 0.00 0.00 41.71 4.41
2266 6505 1.070786 GTTGCAGAAGGGGTCGTCA 59.929 57.895 0.00 0.00 0.00 4.35
2280 6519 1.747355 CATCCTCCATGAACTGGTTGC 59.253 52.381 0.00 0.00 46.08 4.17
2338 6577 0.037232 CCTGACTTTGGGTCTCGTCC 60.037 60.000 0.00 0.00 44.74 4.79
2434 7087 3.013276 TCGCAATAGATGTCATCGTCC 57.987 47.619 7.18 0.00 0.00 4.79
2552 7206 1.741401 CCGTGCGAATGCTCTTCCA 60.741 57.895 0.00 0.00 43.34 3.53
2613 7267 3.007290 CGGATCTTGGCTAATCTCCATCA 59.993 47.826 10.22 0.00 32.92 3.07
2692 7349 4.460382 GGCTCAAACATCTTCCTTTCATGA 59.540 41.667 0.00 0.00 0.00 3.07
2784 7441 1.157585 TGCGGCGCAATACTTGTTAA 58.842 45.000 34.58 3.59 34.76 2.01
2862 7519 3.202211 AGGAAAAGGGCTAGGAAAGGAT 58.798 45.455 0.00 0.00 0.00 3.24
2869 7526 2.644676 GTAGCAAGGAAAAGGGCTAGG 58.355 52.381 0.00 0.00 39.33 3.02
2871 7528 1.065709 CCGTAGCAAGGAAAAGGGCTA 60.066 52.381 0.00 0.00 37.79 3.93
2872 7529 0.322546 CCGTAGCAAGGAAAAGGGCT 60.323 55.000 0.00 0.00 40.26 5.19
2874 7531 1.313091 GGCCGTAGCAAGGAAAAGGG 61.313 60.000 0.00 0.00 42.56 3.95
2912 7572 9.486497 ACAACAATTGAACATGCAAACATATAA 57.514 25.926 13.59 0.00 33.67 0.98
3034 7694 0.675633 CTTGAACTTGGGGCAACTGG 59.324 55.000 0.00 0.00 0.00 4.00
3037 7697 1.546029 GATCCTTGAACTTGGGGCAAC 59.454 52.381 0.00 0.00 0.00 4.17
3076 7737 3.087781 GCCATCTTCTTGCCTCTCTTTT 58.912 45.455 0.00 0.00 0.00 2.27
3077 7738 2.620108 GGCCATCTTCTTGCCTCTCTTT 60.620 50.000 0.00 0.00 42.01 2.52
3103 7764 3.461773 CATCTCCACCTCCGGCGT 61.462 66.667 6.01 0.00 0.00 5.68
3161 7822 2.616960 GCATCACTTATGTCGTCCACA 58.383 47.619 0.00 0.00 40.18 4.17
3174 7835 1.142465 GTCCATGGATGAGGCATCACT 59.858 52.381 19.62 0.00 42.13 3.41
3200 7861 0.522626 TCATGCCATGCAAAGTGTCG 59.477 50.000 0.00 0.00 43.62 4.35
3350 8098 2.273449 CTTTGCCGGGATGCCTCT 59.727 61.111 2.18 0.00 0.00 3.69
3500 8248 1.376037 GAACCAGGCCCTCGTCTTG 60.376 63.158 0.00 0.00 0.00 3.02
3653 8406 1.643880 CCGGCCTTCAAAATGAATGC 58.356 50.000 0.00 10.63 43.97 3.56
3708 8499 2.281070 CCGGCAACACAGTCAGCT 60.281 61.111 0.00 0.00 0.00 4.24
3713 8504 3.049674 CATCGCCGGCAACACAGT 61.050 61.111 28.98 0.00 0.00 3.55
3780 8598 4.854173 TCAAATGCCAAGCCTAGTTCATA 58.146 39.130 0.00 0.00 0.00 2.15
3781 8599 3.700538 TCAAATGCCAAGCCTAGTTCAT 58.299 40.909 0.00 0.00 0.00 2.57
3782 8600 3.153369 TCAAATGCCAAGCCTAGTTCA 57.847 42.857 0.00 0.00 0.00 3.18
3783 8601 4.237724 GTTTCAAATGCCAAGCCTAGTTC 58.762 43.478 0.00 0.00 0.00 3.01
3784 8602 3.640967 TGTTTCAAATGCCAAGCCTAGTT 59.359 39.130 0.00 0.00 0.00 2.24
3785 8603 3.230134 TGTTTCAAATGCCAAGCCTAGT 58.770 40.909 0.00 0.00 0.00 2.57
3786 8604 3.940209 TGTTTCAAATGCCAAGCCTAG 57.060 42.857 0.00 0.00 0.00 3.02
3788 8606 3.404899 CAATGTTTCAAATGCCAAGCCT 58.595 40.909 0.00 0.00 0.00 4.58
3946 8772 0.093026 GCGACCTCAAACGAACATCG 59.907 55.000 0.00 0.00 46.93 3.84
4010 9264 2.167693 GTGGCTAGTGTGCATGGTAGTA 59.832 50.000 0.00 0.00 34.04 1.82
4012 9266 1.208052 AGTGGCTAGTGTGCATGGTAG 59.792 52.381 0.00 0.00 34.04 3.18
4021 9275 1.673033 GCGTTGATCAGTGGCTAGTGT 60.673 52.381 4.68 0.00 0.00 3.55
4031 9285 0.036952 AGGTCACAGGCGTTGATCAG 60.037 55.000 0.00 0.00 0.00 2.90
4036 9290 1.095228 AACACAGGTCACAGGCGTTG 61.095 55.000 0.00 0.00 0.00 4.10
4041 9295 1.949525 CAAGGAAACACAGGTCACAGG 59.050 52.381 0.00 0.00 0.00 4.00
4044 9298 2.341846 TCCAAGGAAACACAGGTCAC 57.658 50.000 0.00 0.00 0.00 3.67
4047 9337 2.818751 TGTTCCAAGGAAACACAGGT 57.181 45.000 2.55 0.00 35.75 4.00
4059 9349 3.243704 GCTGCCAGTACAATTTGTTCCAA 60.244 43.478 7.45 0.00 0.00 3.53
4076 9366 2.618709 ACTTACAAGAAACAGTGCTGCC 59.381 45.455 0.00 0.00 0.00 4.85
4091 9383 5.563475 GCAAGTTCGTACTCCAGTACTTACA 60.563 44.000 13.69 0.00 46.43 2.41
4112 9415 3.764434 TCCATTGGCGGTTTAATTAGCAA 59.236 39.130 0.00 0.00 0.00 3.91
4113 9416 3.357203 TCCATTGGCGGTTTAATTAGCA 58.643 40.909 0.00 0.00 0.00 3.49
4120 9435 2.092158 TGATCCATCCATTGGCGGTTTA 60.092 45.455 9.92 0.00 46.01 2.01
4123 9438 0.466189 GTGATCCATCCATTGGCGGT 60.466 55.000 9.92 0.31 46.01 5.68
4143 9462 3.369471 GCTTGTAACTGGGTAGCAGATGA 60.369 47.826 0.00 0.00 0.00 2.92
4147 9466 2.350522 CAGCTTGTAACTGGGTAGCAG 58.649 52.381 0.00 0.00 34.37 4.24
4152 9471 1.142870 TCAAGCAGCTTGTAACTGGGT 59.857 47.619 30.16 0.00 41.66 4.51
4153 9472 1.896220 TCAAGCAGCTTGTAACTGGG 58.104 50.000 30.16 6.76 41.66 4.45
4191 9514 5.417894 CCGGTCTCCTGTAATATGCACTATA 59.582 44.000 0.00 0.00 0.00 1.31
4193 9516 3.572682 CCGGTCTCCTGTAATATGCACTA 59.427 47.826 0.00 0.00 0.00 2.74
4194 9517 2.365617 CCGGTCTCCTGTAATATGCACT 59.634 50.000 0.00 0.00 0.00 4.40
4195 9518 2.364324 TCCGGTCTCCTGTAATATGCAC 59.636 50.000 0.00 0.00 0.00 4.57
4196 9519 2.673258 TCCGGTCTCCTGTAATATGCA 58.327 47.619 0.00 0.00 0.00 3.96
4197 9520 3.746045 TTCCGGTCTCCTGTAATATGC 57.254 47.619 0.00 0.00 0.00 3.14
4198 9521 7.713507 TGTTTAATTCCGGTCTCCTGTAATATG 59.286 37.037 0.00 0.00 0.00 1.78
4199 9522 7.798071 TGTTTAATTCCGGTCTCCTGTAATAT 58.202 34.615 0.00 0.00 0.00 1.28
4200 9523 7.185318 TGTTTAATTCCGGTCTCCTGTAATA 57.815 36.000 0.00 0.00 0.00 0.98
4201 9524 6.057321 TGTTTAATTCCGGTCTCCTGTAAT 57.943 37.500 0.00 0.00 0.00 1.89
4202 9525 5.486735 TGTTTAATTCCGGTCTCCTGTAA 57.513 39.130 0.00 0.00 0.00 2.41
4203 9526 5.486735 TTGTTTAATTCCGGTCTCCTGTA 57.513 39.130 0.00 0.00 0.00 2.74
4204 9527 4.360951 TTGTTTAATTCCGGTCTCCTGT 57.639 40.909 0.00 0.00 0.00 4.00
4205 9528 5.897377 AATTGTTTAATTCCGGTCTCCTG 57.103 39.130 0.00 0.00 30.85 3.86
4206 9529 9.117183 GTAATAATTGTTTAATTCCGGTCTCCT 57.883 33.333 0.00 0.00 37.64 3.69
4207 9530 9.117183 AGTAATAATTGTTTAATTCCGGTCTCC 57.883 33.333 0.00 0.00 37.64 3.71
4227 9550 7.072454 AGCAAAGGGGATGATCAGTAAGTAATA 59.928 37.037 0.09 0.00 0.00 0.98
4229 9552 5.191722 AGCAAAGGGGATGATCAGTAAGTAA 59.808 40.000 0.09 0.00 0.00 2.24
4231 9554 3.525199 AGCAAAGGGGATGATCAGTAAGT 59.475 43.478 0.09 0.00 0.00 2.24
4233 9556 3.117888 GGAGCAAAGGGGATGATCAGTAA 60.118 47.826 0.09 0.00 34.97 2.24
4235 9558 1.213926 GGAGCAAAGGGGATGATCAGT 59.786 52.381 0.09 0.00 34.97 3.41
4236 9559 1.478288 GGGAGCAAAGGGGATGATCAG 60.478 57.143 0.09 0.00 34.97 2.90
4237 9560 0.552848 GGGAGCAAAGGGGATGATCA 59.447 55.000 0.00 0.00 34.97 2.92
4238 9561 0.552848 TGGGAGCAAAGGGGATGATC 59.447 55.000 0.00 0.00 32.58 2.92
4239 9562 1.133262 CATGGGAGCAAAGGGGATGAT 60.133 52.381 0.00 0.00 0.00 2.45
4240 9563 0.259647 CATGGGAGCAAAGGGGATGA 59.740 55.000 0.00 0.00 0.00 2.92
4241 9564 1.397390 GCATGGGAGCAAAGGGGATG 61.397 60.000 0.00 0.00 0.00 3.51
4242 9565 1.075748 GCATGGGAGCAAAGGGGAT 60.076 57.895 0.00 0.00 0.00 3.85
4243 9566 2.360191 GCATGGGAGCAAAGGGGA 59.640 61.111 0.00 0.00 0.00 4.81
4244 9567 2.037687 TGCATGGGAGCAAAGGGG 59.962 61.111 0.00 0.00 42.46 4.79
4261 9584 0.518636 GTATGATCGGCGCATGCAAT 59.481 50.000 19.57 5.02 45.35 3.56
4262 9585 1.506309 GGTATGATCGGCGCATGCAA 61.506 55.000 19.57 0.00 45.35 4.08
4263 9586 1.960763 GGTATGATCGGCGCATGCA 60.961 57.895 19.57 1.21 45.35 3.96
4264 9587 2.680913 GGGTATGATCGGCGCATGC 61.681 63.158 10.83 7.91 41.71 4.06
4265 9588 1.301637 TGGGTATGATCGGCGCATG 60.302 57.895 10.83 0.00 0.00 4.06
4266 9589 1.301716 GTGGGTATGATCGGCGCAT 60.302 57.895 10.83 3.28 0.00 4.73
4267 9590 2.038814 ATGTGGGTATGATCGGCGCA 62.039 55.000 10.83 0.00 0.00 6.09
4268 9591 1.301716 ATGTGGGTATGATCGGCGC 60.302 57.895 0.00 0.00 0.00 6.53
4269 9592 1.568612 GCATGTGGGTATGATCGGCG 61.569 60.000 0.00 0.00 0.00 6.46
4270 9593 0.534877 TGCATGTGGGTATGATCGGC 60.535 55.000 0.00 0.00 0.00 5.54
4271 9594 1.808343 CATGCATGTGGGTATGATCGG 59.192 52.381 18.91 0.00 33.33 4.18
4272 9595 1.198408 GCATGCATGTGGGTATGATCG 59.802 52.381 26.79 0.00 33.33 3.69
4273 9596 2.232399 TGCATGCATGTGGGTATGATC 58.768 47.619 26.79 7.53 33.33 2.92
4274 9597 2.368311 TGCATGCATGTGGGTATGAT 57.632 45.000 26.79 0.00 33.33 2.45
4309 9687 3.181511 GCCTTTGTTTGTTGGCAAAAGTC 60.182 43.478 0.00 0.00 45.01 3.01
4316 9695 2.243957 GCGGCCTTTGTTTGTTGGC 61.244 57.895 0.00 0.00 44.22 4.52
4348 9729 9.747898 TCTATATGTATGGAACCTTTGTTTGTT 57.252 29.630 0.00 0.00 33.97 2.83
4349 9730 9.920946 ATCTATATGTATGGAACCTTTGTTTGT 57.079 29.630 0.00 0.00 33.97 2.83
4351 9732 9.920946 ACATCTATATGTATGGAACCTTTGTTT 57.079 29.630 0.00 0.00 44.66 2.83
4357 9738 9.601810 TCAACTACATCTATATGTATGGAACCT 57.398 33.333 1.78 0.00 45.33 3.50
4361 9742 8.903820 CGGATCAACTACATCTATATGTATGGA 58.096 37.037 1.78 1.75 45.33 3.41
4362 9743 8.687242 ACGGATCAACTACATCTATATGTATGG 58.313 37.037 1.78 0.00 45.33 2.74
4370 9751 5.828328 TGAGTCACGGATCAACTACATCTAT 59.172 40.000 0.00 0.00 0.00 1.98
4380 9761 1.627864 TCCAGTGAGTCACGGATCAA 58.372 50.000 22.95 6.99 39.64 2.57
4397 9778 5.873179 TGGAGTGATGTAACGATTTTTCC 57.127 39.130 0.00 0.00 0.00 3.13
4400 9781 5.065218 GCTCATGGAGTGATGTAACGATTTT 59.935 40.000 0.00 0.00 35.97 1.82
4408 9789 4.558226 ACAAAGCTCATGGAGTGATGTA 57.442 40.909 4.67 0.00 35.97 2.29
4409 9790 3.430042 ACAAAGCTCATGGAGTGATGT 57.570 42.857 4.67 0.00 35.97 3.06
4410 9791 5.356190 ACAATACAAAGCTCATGGAGTGATG 59.644 40.000 16.36 4.40 35.97 3.07
4411 9792 5.503927 ACAATACAAAGCTCATGGAGTGAT 58.496 37.500 16.36 1.80 35.97 3.06
4412 9793 4.910195 ACAATACAAAGCTCATGGAGTGA 58.090 39.130 16.36 0.00 31.38 3.41
4413 9794 4.940046 AGACAATACAAAGCTCATGGAGTG 59.060 41.667 9.79 9.79 33.08 3.51
4414 9795 5.171339 AGACAATACAAAGCTCATGGAGT 57.829 39.130 4.67 0.00 31.39 3.85
4415 9796 5.413833 ACAAGACAATACAAAGCTCATGGAG 59.586 40.000 4.67 0.00 0.00 3.86
4437 9822 6.430616 TGAGCTAATCATCATCAACAACAACA 59.569 34.615 0.00 0.00 31.12 3.33
4438 9823 6.845302 TGAGCTAATCATCATCAACAACAAC 58.155 36.000 0.00 0.00 31.12 3.32
4439 9824 7.634671 ATGAGCTAATCATCATCAACAACAA 57.365 32.000 0.00 0.00 46.01 2.83
4473 9861 3.732204 AGGAGGATTGGAGGAGAGTAGAT 59.268 47.826 0.00 0.00 0.00 1.98
4477 9865 1.648568 TGAGGAGGATTGGAGGAGAGT 59.351 52.381 0.00 0.00 0.00 3.24
4478 9866 2.318908 CTGAGGAGGATTGGAGGAGAG 58.681 57.143 0.00 0.00 0.00 3.20
4479 9867 1.690845 GCTGAGGAGGATTGGAGGAGA 60.691 57.143 0.00 0.00 0.00 3.71
4480 9868 0.758123 GCTGAGGAGGATTGGAGGAG 59.242 60.000 0.00 0.00 0.00 3.69
4481 9869 0.341258 AGCTGAGGAGGATTGGAGGA 59.659 55.000 0.00 0.00 0.00 3.71
4482 9870 0.758123 GAGCTGAGGAGGATTGGAGG 59.242 60.000 0.00 0.00 0.00 4.30
4483 9871 1.493861 TGAGCTGAGGAGGATTGGAG 58.506 55.000 0.00 0.00 0.00 3.86
4484 9872 1.556911 GTTGAGCTGAGGAGGATTGGA 59.443 52.381 0.00 0.00 0.00 3.53
4485 9873 1.280133 TGTTGAGCTGAGGAGGATTGG 59.720 52.381 0.00 0.00 0.00 3.16
4486 9874 2.289882 TGTGTTGAGCTGAGGAGGATTG 60.290 50.000 0.00 0.00 0.00 2.67
4487 9875 1.980765 TGTGTTGAGCTGAGGAGGATT 59.019 47.619 0.00 0.00 0.00 3.01
4488 9876 1.554160 CTGTGTTGAGCTGAGGAGGAT 59.446 52.381 0.00 0.00 0.00 3.24
4503 9891 0.963856 TACGGTCGATGGAGCTGTGT 60.964 55.000 5.37 0.00 38.53 3.72
4505 9893 0.385751 CATACGGTCGATGGAGCTGT 59.614 55.000 5.37 7.33 38.53 4.40
4520 9908 3.305314 TCCTGCACCGGGACATAC 58.695 61.111 6.32 0.00 33.41 2.39
4601 9989 0.252558 GTGTCCTTAGGGGAGTGGGA 60.253 60.000 0.00 0.00 46.10 4.37
4613 10001 3.307906 TAGGCGCCACGTGTCCTT 61.308 61.111 31.54 6.76 0.00 3.36
4614 10002 4.065281 GTAGGCGCCACGTGTCCT 62.065 66.667 31.54 20.24 0.00 3.85
4630 10018 4.735132 CATCCGACGTGGGTGCGT 62.735 66.667 16.77 0.00 43.38 5.24
4634 10022 2.660802 GGTTCATCCGACGTGGGT 59.339 61.111 16.77 0.00 38.76 4.51
4706 10095 2.906389 AGGATAAGCACTTGTCTGTCCA 59.094 45.455 7.03 0.00 32.28 4.02
4732 10121 2.134287 TACTCTGAGGCATCCGGGC 61.134 63.158 9.85 0.00 43.80 6.13
4758 11932 6.764308 AGAGCAACACCTAAACGTATACTA 57.236 37.500 0.56 0.00 0.00 1.82
4759 11933 5.656213 AGAGCAACACCTAAACGTATACT 57.344 39.130 0.56 0.00 0.00 2.12
4760 11934 7.008992 CACTTAGAGCAACACCTAAACGTATAC 59.991 40.741 0.00 0.00 0.00 1.47
4761 11935 7.031372 CACTTAGAGCAACACCTAAACGTATA 58.969 38.462 0.00 0.00 0.00 1.47
4762 11936 5.867716 CACTTAGAGCAACACCTAAACGTAT 59.132 40.000 0.00 0.00 0.00 3.06
4784 12237 7.524294 TTTTCAGAAGAACAAATGAAAGCAC 57.476 32.000 0.00 0.00 41.28 4.40
4840 12295 1.024046 TTCGATGCACATTCCCGGTG 61.024 55.000 0.00 0.00 39.25 4.94
4872 12329 3.759086 GGGTTCTTCTTCTTCCAATCCAC 59.241 47.826 0.00 0.00 0.00 4.02
4873 12330 3.657727 AGGGTTCTTCTTCTTCCAATCCA 59.342 43.478 0.00 0.00 0.00 3.41
4894 12351 1.135199 ACATTACCGGTCACAGCGTAG 60.135 52.381 12.40 0.00 37.40 3.51
4905 12363 1.037030 AATGCTGGGCACATTACCGG 61.037 55.000 0.00 0.00 43.04 5.28
4908 12369 2.035066 GGATCAATGCTGGGCACATTAC 59.965 50.000 0.00 0.00 43.04 1.89
4914 12375 1.750018 CACGGATCAATGCTGGGCA 60.750 57.895 0.00 0.00 44.86 5.36
5064 12528 7.965107 GGTCAAGTACATGAACATGAGAAATTC 59.035 37.037 19.56 0.00 41.20 2.17
5089 12553 6.101296 AGGGATTAAACTAGTTACCCTCATGG 59.899 42.308 24.36 0.00 41.86 3.66
5118 12582 1.578215 AAGCTCCCATGTCTGCCCAT 61.578 55.000 0.00 0.00 0.00 4.00
5182 12657 0.178967 TCAATGGAGCCCAAAGTGCA 60.179 50.000 0.00 0.00 36.95 4.57
5200 12675 6.486253 TCTAGAACACATGCATTTCAGTTC 57.514 37.500 16.54 16.54 36.52 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.