Multiple sequence alignment - TraesCS3D01G426400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G426400 chr3D 100.000 3500 0 0 1 3500 539239479 539242978 0.000000e+00 6464.0
1 TraesCS3D01G426400 chr3D 98.064 2428 44 3 1 2427 495809567 495807142 0.000000e+00 4220.0
2 TraesCS3D01G426400 chr3D 78.333 360 57 9 5 362 608568762 608569102 2.740000e-51 213.0
3 TraesCS3D01G426400 chr3D 78.177 362 54 18 5 363 517004644 517004305 1.270000e-49 207.0
4 TraesCS3D01G426400 chr3D 90.196 51 4 1 2631 2681 587300571 587300522 8.110000e-07 65.8
5 TraesCS3D01G426400 chr3A 95.392 1736 69 7 909 2637 674459659 674461390 0.000000e+00 2752.0
6 TraesCS3D01G426400 chr3B 90.279 1615 124 11 1038 2637 714915997 714917593 0.000000e+00 2082.0
7 TraesCS3D01G426400 chr3B 94.716 1022 53 1 1413 2434 811751497 811752517 0.000000e+00 1587.0
8 TraesCS3D01G426400 chr3B 83.523 789 89 16 2637 3391 790316873 790316092 0.000000e+00 699.0
9 TraesCS3D01G426400 chr3B 84.066 728 90 9 2695 3401 790190621 790189899 0.000000e+00 678.0
10 TraesCS3D01G426400 chr3B 93.056 288 19 1 1129 1416 811748710 811748996 1.500000e-113 420.0
11 TraesCS3D01G426400 chr3B 86.463 229 23 3 913 1133 811743034 811743262 9.700000e-61 244.0
12 TraesCS3D01G426400 chr5D 84.371 883 94 16 2634 3480 176088835 176089709 0.000000e+00 826.0
13 TraesCS3D01G426400 chr5D 80.114 176 29 6 364 535 264075580 264075407 3.670000e-25 126.0
14 TraesCS3D01G426400 chr4D 83.102 864 115 17 2637 3480 374784881 374784029 0.000000e+00 758.0
15 TraesCS3D01G426400 chr4D 84.105 799 92 8 2716 3480 35490155 35489358 0.000000e+00 739.0
16 TraesCS3D01G426400 chr4D 82.124 772 90 30 2635 3375 506961202 506960448 4.960000e-173 617.0
17 TraesCS3D01G426400 chr7D 83.774 832 87 20 2691 3480 403542458 403543283 0.000000e+00 745.0
18 TraesCS3D01G426400 chr7D 78.418 885 110 36 2659 3480 573006589 573005723 5.220000e-138 501.0
19 TraesCS3D01G426400 chr7D 81.429 210 38 1 672 881 26835496 26835704 1.670000e-38 171.0
20 TraesCS3D01G426400 chr7D 81.863 204 29 7 681 881 428711584 428711386 7.770000e-37 165.0
21 TraesCS3D01G426400 chr7D 83.007 153 25 1 218 369 483874102 483873950 1.690000e-28 137.0
22 TraesCS3D01G426400 chr7D 82.394 142 22 3 221 360 413108796 413108656 1.710000e-23 121.0
23 TraesCS3D01G426400 chr7D 80.952 147 25 3 216 360 454069629 454069774 2.860000e-21 113.0
24 TraesCS3D01G426400 chr7D 78.107 169 30 7 5 169 13302380 13302215 2.220000e-17 100.0
25 TraesCS3D01G426400 chr2A 82.794 866 103 24 2637 3479 688411595 688410753 0.000000e+00 732.0
26 TraesCS3D01G426400 chr2A 76.623 231 45 9 360 584 428898510 428898737 6.140000e-23 119.0
27 TraesCS3D01G426400 chr6D 82.155 891 101 14 2637 3480 107769057 107769936 0.000000e+00 712.0
28 TraesCS3D01G426400 chr6D 83.333 780 84 9 2695 3429 311252353 311253131 0.000000e+00 678.0
29 TraesCS3D01G426400 chr6D 87.402 254 30 1 2644 2897 410080248 410080499 1.230000e-74 291.0
30 TraesCS3D01G426400 chr6D 95.833 48 2 0 3433 3480 311262294 311262341 1.040000e-10 78.7
31 TraesCS3D01G426400 chr1B 81.164 876 128 14 2635 3480 645533584 645532716 0.000000e+00 669.0
32 TraesCS3D01G426400 chr1B 79.018 224 42 4 660 881 513475682 513475902 7.830000e-32 148.0
33 TraesCS3D01G426400 chr2D 81.313 899 95 25 2635 3480 535558084 535558962 0.000000e+00 662.0
34 TraesCS3D01G426400 chr2D 78.261 230 45 4 361 586 351065007 351064779 3.640000e-30 143.0
35 TraesCS3D01G426400 chr2B 81.873 822 115 20 2633 3438 210249690 210250493 0.000000e+00 662.0
36 TraesCS3D01G426400 chr2B 81.905 210 36 2 672 881 667259421 667259214 3.590000e-40 176.0
37 TraesCS3D01G426400 chr5B 80.760 816 128 18 2637 3429 692745522 692746331 8.310000e-171 610.0
38 TraesCS3D01G426400 chr5B 77.419 372 67 15 5 371 391130513 391130872 4.580000e-49 206.0
39 TraesCS3D01G426400 chr5B 76.623 231 47 7 361 586 497381819 497381591 1.710000e-23 121.0
40 TraesCS3D01G426400 chr7B 80.446 762 120 13 2691 3429 657606840 657607595 3.950000e-154 555.0
41 TraesCS3D01G426400 chr7B 79.228 544 70 17 2630 3151 6126180 6126702 4.330000e-89 339.0
42 TraesCS3D01G426400 chr7B 80.282 213 33 9 672 881 446140629 446140423 6.050000e-33 152.0
43 TraesCS3D01G426400 chr7B 84.211 152 15 6 3336 3480 14146378 14146527 4.710000e-29 139.0
44 TraesCS3D01G426400 chr7B 79.412 204 34 8 1 200 87828410 87828211 1.690000e-28 137.0
45 TraesCS3D01G426400 chr5A 82.705 584 66 19 2709 3271 665490929 665491498 1.460000e-133 486.0
46 TraesCS3D01G426400 chr5A 83.444 151 23 2 361 509 510547031 510547181 4.710000e-29 139.0
47 TraesCS3D01G426400 chr5A 81.319 91 14 3 4 92 69383052 69382963 1.740000e-08 71.3
48 TraesCS3D01G426400 chr6B 77.461 843 115 30 2698 3480 278342933 278343760 5.370000e-118 435.0
49 TraesCS3D01G426400 chr1A 86.890 328 30 2 3166 3480 386502589 386502262 4.300000e-94 355.0
50 TraesCS3D01G426400 chr4B 78.437 371 58 11 3126 3480 21469609 21469245 4.550000e-54 222.0
51 TraesCS3D01G426400 chr4B 80.476 210 32 7 672 878 89455027 89454824 6.050000e-33 152.0
52 TraesCS3D01G426400 chr4B 84.247 146 20 3 221 365 618070752 618070609 4.710000e-29 139.0
53 TraesCS3D01G426400 chr4B 100.000 28 0 0 3472 3499 193548811 193548784 6.000000e-03 52.8
54 TraesCS3D01G426400 chr6A 85.377 212 25 6 672 881 169514999 169514792 7.610000e-52 215.0
55 TraesCS3D01G426400 chr6A 80.682 176 26 8 361 531 572592771 572592599 2.840000e-26 130.0
56 TraesCS3D01G426400 chr4A 77.285 361 62 14 4 361 710176818 710177161 9.910000e-46 195.0
57 TraesCS3D01G426400 chr4A 82.609 69 10 2 4 72 490532486 490532420 3.770000e-05 60.2
58 TraesCS3D01G426400 chr7A 81.567 217 33 5 672 881 490271185 490270969 4.640000e-39 172.0
59 TraesCS3D01G426400 chr7A 76.338 355 61 6 5 357 261688046 261688379 6.010000e-38 169.0
60 TraesCS3D01G426400 chrUn 81.250 176 30 3 361 534 126962941 126962767 4.710000e-29 139.0
61 TraesCS3D01G426400 chrUn 94.872 39 2 0 4 42 95446615 95446577 1.050000e-05 62.1
62 TraesCS3D01G426400 chr1D 77.729 229 44 6 361 584 468694599 468694373 2.190000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G426400 chr3D 539239479 539242978 3499 False 6464.0 6464 100.000 1 3500 1 chr3D.!!$F1 3499
1 TraesCS3D01G426400 chr3D 495807142 495809567 2425 True 4220.0 4220 98.064 1 2427 1 chr3D.!!$R1 2426
2 TraesCS3D01G426400 chr3A 674459659 674461390 1731 False 2752.0 2752 95.392 909 2637 1 chr3A.!!$F1 1728
3 TraesCS3D01G426400 chr3B 714915997 714917593 1596 False 2082.0 2082 90.279 1038 2637 1 chr3B.!!$F1 1599
4 TraesCS3D01G426400 chr3B 811748710 811752517 3807 False 1003.5 1587 93.886 1129 2434 2 chr3B.!!$F3 1305
5 TraesCS3D01G426400 chr3B 790316092 790316873 781 True 699.0 699 83.523 2637 3391 1 chr3B.!!$R2 754
6 TraesCS3D01G426400 chr3B 790189899 790190621 722 True 678.0 678 84.066 2695 3401 1 chr3B.!!$R1 706
7 TraesCS3D01G426400 chr5D 176088835 176089709 874 False 826.0 826 84.371 2634 3480 1 chr5D.!!$F1 846
8 TraesCS3D01G426400 chr4D 374784029 374784881 852 True 758.0 758 83.102 2637 3480 1 chr4D.!!$R2 843
9 TraesCS3D01G426400 chr4D 35489358 35490155 797 True 739.0 739 84.105 2716 3480 1 chr4D.!!$R1 764
10 TraesCS3D01G426400 chr4D 506960448 506961202 754 True 617.0 617 82.124 2635 3375 1 chr4D.!!$R3 740
11 TraesCS3D01G426400 chr7D 403542458 403543283 825 False 745.0 745 83.774 2691 3480 1 chr7D.!!$F2 789
12 TraesCS3D01G426400 chr7D 573005723 573006589 866 True 501.0 501 78.418 2659 3480 1 chr7D.!!$R5 821
13 TraesCS3D01G426400 chr2A 688410753 688411595 842 True 732.0 732 82.794 2637 3479 1 chr2A.!!$R1 842
14 TraesCS3D01G426400 chr6D 107769057 107769936 879 False 712.0 712 82.155 2637 3480 1 chr6D.!!$F1 843
15 TraesCS3D01G426400 chr6D 311252353 311253131 778 False 678.0 678 83.333 2695 3429 1 chr6D.!!$F2 734
16 TraesCS3D01G426400 chr1B 645532716 645533584 868 True 669.0 669 81.164 2635 3480 1 chr1B.!!$R1 845
17 TraesCS3D01G426400 chr2D 535558084 535558962 878 False 662.0 662 81.313 2635 3480 1 chr2D.!!$F1 845
18 TraesCS3D01G426400 chr2B 210249690 210250493 803 False 662.0 662 81.873 2633 3438 1 chr2B.!!$F1 805
19 TraesCS3D01G426400 chr5B 692745522 692746331 809 False 610.0 610 80.760 2637 3429 1 chr5B.!!$F2 792
20 TraesCS3D01G426400 chr7B 657606840 657607595 755 False 555.0 555 80.446 2691 3429 1 chr7B.!!$F3 738
21 TraesCS3D01G426400 chr7B 6126180 6126702 522 False 339.0 339 79.228 2630 3151 1 chr7B.!!$F1 521
22 TraesCS3D01G426400 chr5A 665490929 665491498 569 False 486.0 486 82.705 2709 3271 1 chr5A.!!$F2 562
23 TraesCS3D01G426400 chr6B 278342933 278343760 827 False 435.0 435 77.461 2698 3480 1 chr6B.!!$F1 782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.108186 TGTGAAGTGGCCGCTCTATG 60.108 55.000 21.49 0.0 0.00 2.23 F
711 712 1.000052 TGTGGCACGAAGTAACATCGA 60.000 47.619 13.77 0.0 41.61 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1530 4036 1.153449 GTGGACCGATTCATGGCGA 60.153 57.895 0.00 0.0 0.0 5.54 R
2682 5216 0.176680 CTGCCCGCAGACTTGTCTAT 59.823 55.000 11.32 0.0 46.3 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 0.172352 GAGAGGTCTCGTTGGCTCTG 59.828 60.000 0.00 0.00 32.78 3.35
45 46 2.283529 GGTCTCGTTGGCTCTGGGA 61.284 63.158 0.00 0.00 0.00 4.37
74 75 0.108186 TGTGAAGTGGCCGCTCTATG 60.108 55.000 21.49 0.00 0.00 2.23
76 77 1.264749 TGAAGTGGCCGCTCTATGGT 61.265 55.000 21.49 1.55 0.00 3.55
165 166 3.637273 GGGTGGTCAGAAGCGGGT 61.637 66.667 0.00 0.00 0.00 5.28
178 179 1.221840 GCGGGTGTGGATGATGTCT 59.778 57.895 0.00 0.00 0.00 3.41
308 309 1.812507 GCATAACACGTCCGGACCC 60.813 63.158 28.52 5.39 0.00 4.46
481 482 8.402798 TGAAATCCGGCATAAAATGTATACAT 57.597 30.769 12.75 12.75 38.41 2.29
588 589 1.666189 GCGTTCAAGATGCCCTAACTC 59.334 52.381 0.00 0.00 34.03 3.01
667 668 4.525912 AGATGTGGTGGCATTTTCTTTC 57.474 40.909 0.00 0.00 0.00 2.62
711 712 1.000052 TGTGGCACGAAGTAACATCGA 60.000 47.619 13.77 0.00 41.61 3.59
838 839 8.082334 TGCCATTTTTGAATAACTAAACTTGC 57.918 30.769 0.00 0.00 0.00 4.01
921 922 1.508632 GCAGCAACGAGTTCTTACCA 58.491 50.000 0.00 0.00 0.00 3.25
1530 4036 3.461773 CTCCTCACCGGCATCCGT 61.462 66.667 0.00 0.00 46.80 4.69
1664 4171 2.746277 GTGCCACCGACATCACCC 60.746 66.667 0.00 0.00 0.00 4.61
1775 4282 2.100631 CCGCCGAGTCATTGTGGAC 61.101 63.158 0.00 0.00 38.08 4.02
1877 4384 2.587753 CTTGTGTGGCACGACGGT 60.588 61.111 13.77 0.00 37.14 4.83
1943 4450 5.092781 CACAAAATATTACACCTTGGACGC 58.907 41.667 0.00 0.00 0.00 5.19
2090 4600 0.321034 AACGAGCAAGCTCTCATGCA 60.321 50.000 18.82 0.00 44.95 3.96
2214 4730 5.714806 TCTCTCTGGTGTACATATGTTGTCA 59.285 40.000 14.77 8.60 39.87 3.58
2427 4943 7.995463 TTAAAAACCAGTTGTTAGTTGCATC 57.005 32.000 0.00 0.00 35.67 3.91
2447 4963 6.155827 GCATCTCCTAGCTATACACAAGAAG 58.844 44.000 0.00 0.00 0.00 2.85
2562 5080 8.322906 TCTCTTTGTCACAAAATAATGTCGAT 57.677 30.769 4.13 0.00 0.00 3.59
2567 5085 9.553418 TTTGTCACAAAATAATGTCGATATGTG 57.447 29.630 0.00 0.20 38.54 3.21
2684 5218 3.804329 GCCCCTCCAACGCCCATA 61.804 66.667 0.00 0.00 0.00 2.74
2689 5223 0.251916 CCTCCAACGCCCATAGACAA 59.748 55.000 0.00 0.00 0.00 3.18
2729 5265 5.941058 TCCGGCACATCTTAAATTTCACTTA 59.059 36.000 0.00 0.00 0.00 2.24
2750 5286 7.118825 CACTTATTGCATCCGAACATCTCATAT 59.881 37.037 0.00 0.00 0.00 1.78
2756 5292 5.005203 GCATCCGAACATCTCATATTCGATC 59.995 44.000 7.15 0.00 46.28 3.69
2915 5472 2.977178 CTGCTCTGCTCCGACCTT 59.023 61.111 0.00 0.00 0.00 3.50
2924 5481 1.453379 CTCCGACCTTCTCCGCCTA 60.453 63.158 0.00 0.00 0.00 3.93
2974 5552 4.415783 GGAGGAACGCCCAATTGT 57.584 55.556 4.43 0.00 44.71 2.71
2987 5565 2.242196 CCCAATTGTCCTCCACATAGGT 59.758 50.000 4.43 0.00 37.91 3.08
3015 5594 0.762461 GGATGGACTCTAGGCTGGCT 60.762 60.000 9.28 9.28 0.00 4.75
3030 5609 2.514592 GCTTGCTGCTCGGCCATA 60.515 61.111 2.24 0.00 38.95 2.74
3090 5669 1.376424 CATGCTGAAGGGCGACACT 60.376 57.895 0.00 0.00 34.52 3.55
3138 5748 0.755079 CCTCCATCGAAGCCATCTCA 59.245 55.000 0.00 0.00 0.00 3.27
3187 5836 4.150454 CCTCCTCCTCCGGCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
3189 5838 1.230497 CTCCTCCTCCGGCTCCTAA 59.770 63.158 0.00 0.00 0.00 2.69
3194 5843 1.143277 CTCCTCCGGCTCCTAAGAGTA 59.857 57.143 0.00 0.00 42.59 2.59
3278 5927 1.320344 ATCTCGTAGCGGTGCTCCAA 61.320 55.000 5.52 0.00 40.44 3.53
3280 5929 2.048597 CGTAGCGGTGCTCCAACA 60.049 61.111 5.52 0.00 40.44 3.33
3429 6104 0.698198 TGGGTTAGGGTTGTGGGACA 60.698 55.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 2.203126 CCATTCTCCCTCGCTGGC 60.203 66.667 0.00 0.00 0.00 4.85
165 166 1.278985 GGTGTCCAGACATCATCCACA 59.721 52.381 6.17 0.00 43.97 4.17
178 179 1.002624 GAGGATTTGCGGGTGTCCA 60.003 57.895 0.00 0.00 33.12 4.02
319 320 1.153005 TTAAACCGCCCACAACCGT 60.153 52.632 0.00 0.00 0.00 4.83
481 482 1.462731 GGCGGCCATCCAATAATGCA 61.463 55.000 15.62 0.00 0.00 3.96
514 515 3.138128 GGGGGAACAATTCGCGGG 61.138 66.667 6.13 0.00 42.92 6.13
519 520 1.102978 CACGGATGGGGGAACAATTC 58.897 55.000 0.00 0.00 0.00 2.17
562 563 0.659957 GGCATCTTGAACGCTGATCC 59.340 55.000 0.00 0.00 0.00 3.36
667 668 4.853196 CGTGTGGCACTGATTATTTGAAAG 59.147 41.667 19.83 0.00 31.34 2.62
764 765 3.703556 TCTGTTTGGATGGCAAGTTTCAA 59.296 39.130 0.00 0.00 0.00 2.69
838 839 2.139917 TGTTCGGACGTTTTCTGATGG 58.860 47.619 0.00 0.00 39.52 3.51
1318 1320 1.365699 TGCCGATTAAAGAAGCCGAC 58.634 50.000 0.00 0.00 0.00 4.79
1344 1346 2.125512 GGCTTGCCGTCGATGTCT 60.126 61.111 3.52 0.00 0.00 3.41
1530 4036 1.153449 GTGGACCGATTCATGGCGA 60.153 57.895 0.00 0.00 0.00 5.54
1775 4282 1.263217 CGAAACACTTTCTTGGTCCGG 59.737 52.381 0.00 0.00 37.52 5.14
2090 4600 1.751924 GCTTCCACACGTCTATCCTCT 59.248 52.381 0.00 0.00 0.00 3.69
2173 4689 4.156556 AGAGAGATGATAGAGATGCTTCGC 59.843 45.833 0.00 0.00 0.00 4.70
2427 4943 6.699642 GCTTTCTTCTTGTGTATAGCTAGGAG 59.300 42.308 0.00 0.00 0.00 3.69
2562 5080 3.334691 CTTTGGAGGCGAGAAACACATA 58.665 45.455 0.00 0.00 0.00 2.29
2589 5110 2.523325 CTGGGAGAAGAGAGTCCAGA 57.477 55.000 0.00 0.00 45.66 3.86
2605 5126 2.202987 GGCTGGCGATGACTCTGG 60.203 66.667 0.00 0.00 0.00 3.86
2674 5196 2.002586 CAGACTTGTCTATGGGCGTTG 58.997 52.381 2.72 0.00 0.00 4.10
2680 5214 0.811616 GCCCGCAGACTTGTCTATGG 60.812 60.000 2.72 7.96 0.00 2.74
2682 5216 0.176680 CTGCCCGCAGACTTGTCTAT 59.823 55.000 11.32 0.00 46.30 1.98
2683 5217 1.185618 ACTGCCCGCAGACTTGTCTA 61.186 55.000 22.97 0.00 46.30 2.59
2684 5218 2.345244 CTGCCCGCAGACTTGTCT 59.655 61.111 11.32 0.00 46.30 3.41
2689 5223 2.581354 GATCACTGCCCGCAGACT 59.419 61.111 22.97 6.88 46.30 3.24
2729 5265 5.121298 CGAATATGAGATGTTCGGATGCAAT 59.879 40.000 7.37 0.00 45.97 3.56
2750 5286 8.866093 TGTCTTTGTATGGATATAAGGATCGAA 58.134 33.333 0.00 0.00 0.00 3.71
2756 5292 7.984422 TGCATGTCTTTGTATGGATATAAGG 57.016 36.000 0.00 0.00 0.00 2.69
2865 5405 4.862447 CTGCAGCTGCCGCCCATA 62.862 66.667 34.64 14.22 41.18 2.74
2911 5468 2.810164 GGAGATATAGGCGGAGAAGGT 58.190 52.381 0.00 0.00 0.00 3.50
2915 5472 1.073444 ACACGGAGATATAGGCGGAGA 59.927 52.381 0.00 0.00 0.00 3.71
2974 5552 2.520120 AGGATGAGACCTATGTGGAGGA 59.480 50.000 0.00 0.00 39.15 3.71
3015 5594 1.595109 CGATATGGCCGAGCAGCAA 60.595 57.895 0.00 0.00 0.00 3.91
3030 5609 1.432251 CGTCGCCTAGTCCAACGAT 59.568 57.895 0.00 0.00 36.85 3.73
3076 5655 2.328099 GGCAAGTGTCGCCCTTCAG 61.328 63.158 0.00 0.00 44.22 3.02
3109 5712 1.381872 CGATGGAGGTGGAGGAGGT 60.382 63.158 0.00 0.00 0.00 3.85
3138 5748 1.635051 GGGGGAAGAGGAGGAGGAT 59.365 63.158 0.00 0.00 0.00 3.24
3187 5836 1.041447 GGGCTGCCTCCGTACTCTTA 61.041 60.000 19.68 0.00 0.00 2.10
3189 5838 2.760385 GGGCTGCCTCCGTACTCT 60.760 66.667 19.68 0.00 0.00 3.24
3278 5927 4.132336 CAACTACTATGCCATGCTGATGT 58.868 43.478 0.00 0.00 0.00 3.06
3280 5929 4.694760 TCAACTACTATGCCATGCTGAT 57.305 40.909 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.