Multiple sequence alignment - TraesCS3D01G425800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G425800 chr3D 100.000 5312 0 0 1 5312 538400064 538405375 0.000000e+00 9810.0
1 TraesCS3D01G425800 chr3B 91.443 3015 145 46 1600 4587 713321893 713324821 0.000000e+00 4034.0
2 TraesCS3D01G425800 chr3B 85.457 1499 76 64 160 1602 713320418 713321830 0.000000e+00 1430.0
3 TraesCS3D01G425800 chr3B 81.746 126 9 7 1 122 713320297 713320412 5.660000e-15 93.5
4 TraesCS3D01G425800 chr3A 92.636 2200 106 28 2975 5145 673901262 673903434 0.000000e+00 3114.0
5 TraesCS3D01G425800 chr3A 87.111 2025 120 61 56 2011 673898034 673899986 0.000000e+00 2163.0
6 TraesCS3D01G425800 chr3A 89.407 793 70 8 2065 2856 673900251 673901030 0.000000e+00 987.0
7 TraesCS3D01G425800 chr3A 91.892 111 7 2 2864 2973 673901069 673901178 2.560000e-33 154.0
8 TraesCS3D01G425800 chr5B 92.946 1120 55 15 3555 4660 678578992 678577883 0.000000e+00 1609.0
9 TraesCS3D01G425800 chr5B 86.000 100 12 2 1307 1405 450107934 450107836 7.280000e-19 106.0
10 TraesCS3D01G425800 chr4B 91.705 868 52 5 3555 4406 405287889 405287026 0.000000e+00 1186.0
11 TraesCS3D01G425800 chr4B 87.218 266 26 6 4397 4660 405279612 405279353 4.020000e-76 296.0
12 TraesCS3D01G425800 chr4D 83.444 151 21 4 1256 1404 490151878 490151730 2.580000e-28 137.0
13 TraesCS3D01G425800 chr7A 83.824 136 18 3 1270 1403 685230130 685229997 5.580000e-25 126.0
14 TraesCS3D01G425800 chr7A 82.474 97 17 0 1307 1403 225635848 225635752 9.480000e-13 86.1
15 TraesCS3D01G425800 chr5A 85.714 105 12 3 1307 1409 477587084 477586981 2.020000e-19 108.0
16 TraesCS3D01G425800 chr5D 85.000 100 13 2 1307 1405 376939768 376939670 3.390000e-17 100.0
17 TraesCS3D01G425800 chr6A 86.170 94 10 3 2767 2860 556532937 556533027 1.220000e-16 99.0
18 TraesCS3D01G425800 chr7D 81.633 98 16 2 1307 1403 213790665 213790569 4.410000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G425800 chr3D 538400064 538405375 5311 False 9810.0 9810 100.000000 1 5312 1 chr3D.!!$F1 5311
1 TraesCS3D01G425800 chr3B 713320297 713324821 4524 False 1852.5 4034 86.215333 1 4587 3 chr3B.!!$F1 4586
2 TraesCS3D01G425800 chr3A 673898034 673903434 5400 False 1604.5 3114 90.261500 56 5145 4 chr3A.!!$F1 5089
3 TraesCS3D01G425800 chr5B 678577883 678578992 1109 True 1609.0 1609 92.946000 3555 4660 1 chr5B.!!$R2 1105
4 TraesCS3D01G425800 chr4B 405287026 405287889 863 True 1186.0 1186 91.705000 3555 4406 1 chr4B.!!$R2 851

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
719 808 0.034380 TTGATCTCTCCGTCCGTCCT 60.034 55.0 0.00 0.0 0.00 3.85 F
1457 1586 0.251916 TTCCCTGCCGATTCATTCGT 59.748 50.0 0.00 0.0 46.65 3.85 F
1458 1587 0.251916 TCCCTGCCGATTCATTCGTT 59.748 50.0 0.00 0.0 46.65 3.85 F
2361 2785 0.103208 ATTAAGCTCGTGCGGAGAGG 59.897 55.0 8.63 0.0 46.23 3.69 F
2759 3184 0.321298 ACGTGGAAATTAGGCACGCT 60.321 50.0 0.00 0.0 42.21 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2276 2697 0.035534 TTACACGGCCACATCATGCT 60.036 50.0 2.24 0.0 0.00 3.79 R
2361 2785 0.108662 CGCCCCAATTTTCCAAGCTC 60.109 55.0 0.00 0.0 0.00 4.09 R
3198 3748 0.811281 GGAAGTTCCTGGAAATGCCG 59.189 55.0 17.64 0.0 40.66 5.69 R
3572 4132 0.387929 TGTCACTCCTGTTCACGGAC 59.612 55.0 0.00 0.0 0.00 4.79 R
4467 5050 0.179020 TGAATCATAAGCAGGCGGGG 60.179 55.0 0.00 0.0 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 45 1.202592 GGAATCCTCCGCTCTCTTTCC 60.203 57.143 0.00 0.00 30.03 3.13
44 49 0.972983 CCTCCGCTCTCTTTCCTCCA 60.973 60.000 0.00 0.00 0.00 3.86
46 51 1.484240 CTCCGCTCTCTTTCCTCCATT 59.516 52.381 0.00 0.00 0.00 3.16
47 52 1.909302 TCCGCTCTCTTTCCTCCATTT 59.091 47.619 0.00 0.00 0.00 2.32
48 53 2.012673 CCGCTCTCTTTCCTCCATTTG 58.987 52.381 0.00 0.00 0.00 2.32
49 54 1.399791 CGCTCTCTTTCCTCCATTTGC 59.600 52.381 0.00 0.00 0.00 3.68
50 55 2.440409 GCTCTCTTTCCTCCATTTGCA 58.560 47.619 0.00 0.00 0.00 4.08
51 56 2.163211 GCTCTCTTTCCTCCATTTGCAC 59.837 50.000 0.00 0.00 0.00 4.57
52 57 3.683802 CTCTCTTTCCTCCATTTGCACT 58.316 45.455 0.00 0.00 0.00 4.40
54 59 3.328931 TCTCTTTCCTCCATTTGCACTCT 59.671 43.478 0.00 0.00 0.00 3.24
58 63 2.544721 TCCTCCATTTGCACTCTCTCT 58.455 47.619 0.00 0.00 0.00 3.10
66 71 2.418368 TGCACTCTCTCTCTCTCTCC 57.582 55.000 0.00 0.00 0.00 3.71
135 147 1.574428 CGGCACTGGTTTCTTTCCG 59.426 57.895 0.00 0.00 0.00 4.30
138 150 1.574428 CACTGGTTTCTTTCCGCCG 59.426 57.895 0.00 0.00 0.00 6.46
142 154 2.330372 GGTTTCTTTCCGCCGTCCC 61.330 63.158 0.00 0.00 0.00 4.46
143 155 2.357760 TTTCTTTCCGCCGTCCCG 60.358 61.111 0.00 0.00 0.00 5.14
167 179 3.947841 CTCGCTCGCCCTCTCTCG 61.948 72.222 0.00 0.00 0.00 4.04
224 236 4.567159 CGAAAATAACTCTGGTACTCTGGC 59.433 45.833 0.00 0.00 0.00 4.85
225 237 5.488341 GAAAATAACTCTGGTACTCTGGCA 58.512 41.667 0.00 0.00 0.00 4.92
227 239 2.016905 AACTCTGGTACTCTGGCAGT 57.983 50.000 15.27 0.00 39.41 4.40
240 252 2.375174 TCTGGCAGTGGAGTGGTAAAAT 59.625 45.455 15.27 0.00 0.00 1.82
241 253 2.749621 CTGGCAGTGGAGTGGTAAAATC 59.250 50.000 6.28 0.00 0.00 2.17
242 254 2.375174 TGGCAGTGGAGTGGTAAAATCT 59.625 45.455 0.00 0.00 0.00 2.40
243 255 3.585289 TGGCAGTGGAGTGGTAAAATCTA 59.415 43.478 0.00 0.00 0.00 1.98
410 434 0.106708 GTCTGCAACCACTGTCCTCA 59.893 55.000 0.00 0.00 0.00 3.86
411 435 0.106708 TCTGCAACCACTGTCCTCAC 59.893 55.000 0.00 0.00 0.00 3.51
412 436 0.886490 CTGCAACCACTGTCCTCACC 60.886 60.000 0.00 0.00 0.00 4.02
413 437 1.344953 TGCAACCACTGTCCTCACCT 61.345 55.000 0.00 0.00 0.00 4.00
414 438 0.603975 GCAACCACTGTCCTCACCTC 60.604 60.000 0.00 0.00 0.00 3.85
415 439 0.758734 CAACCACTGTCCTCACCTCA 59.241 55.000 0.00 0.00 0.00 3.86
416 440 0.759346 AACCACTGTCCTCACCTCAC 59.241 55.000 0.00 0.00 0.00 3.51
417 441 1.122019 ACCACTGTCCTCACCTCACC 61.122 60.000 0.00 0.00 0.00 4.02
418 442 0.833834 CCACTGTCCTCACCTCACCT 60.834 60.000 0.00 0.00 0.00 4.00
419 443 0.605589 CACTGTCCTCACCTCACCTC 59.394 60.000 0.00 0.00 0.00 3.85
420 444 0.543174 ACTGTCCTCACCTCACCTCC 60.543 60.000 0.00 0.00 0.00 4.30
421 445 1.229209 TGTCCTCACCTCACCTCCC 60.229 63.158 0.00 0.00 0.00 4.30
422 446 1.079438 GTCCTCACCTCACCTCCCT 59.921 63.158 0.00 0.00 0.00 4.20
423 447 0.973496 GTCCTCACCTCACCTCCCTC 60.973 65.000 0.00 0.00 0.00 4.30
424 448 1.687493 CCTCACCTCACCTCCCTCC 60.687 68.421 0.00 0.00 0.00 4.30
425 449 1.687493 CTCACCTCACCTCCCTCCC 60.687 68.421 0.00 0.00 0.00 4.30
426 450 2.689034 CACCTCACCTCCCTCCCC 60.689 72.222 0.00 0.00 0.00 4.81
427 451 4.026357 ACCTCACCTCCCTCCCCC 62.026 72.222 0.00 0.00 0.00 5.40
444 468 4.465446 CCTCCCTCCTCGCCCTCA 62.465 72.222 0.00 0.00 0.00 3.86
466 507 0.178992 CTCTCTCTCCGCCCATCTCT 60.179 60.000 0.00 0.00 0.00 3.10
499 542 2.034066 GGGTTGGTGCTGCTGCTA 59.966 61.111 17.00 0.47 40.48 3.49
500 543 2.042831 GGGTTGGTGCTGCTGCTAG 61.043 63.158 17.00 0.00 40.48 3.42
501 544 2.694760 GGTTGGTGCTGCTGCTAGC 61.695 63.158 17.00 8.10 43.95 3.42
502 545 1.673665 GTTGGTGCTGCTGCTAGCT 60.674 57.895 17.23 0.00 42.97 3.32
505 548 1.078567 GGTGCTGCTGCTAGCTCTT 60.079 57.895 17.23 0.00 42.97 2.85
507 550 0.108233 GTGCTGCTGCTAGCTCTTCT 60.108 55.000 17.23 0.00 42.97 2.85
523 581 4.305769 CTCTTCTTCACTCTCCACTGTTG 58.694 47.826 0.00 0.00 0.00 3.33
556 614 2.029666 CATCCATCCGTCCTCCGC 59.970 66.667 0.00 0.00 34.38 5.54
599 677 4.415332 CGGCAAGCAAGCTGGCAG 62.415 66.667 21.89 14.85 44.51 4.85
600 678 3.300765 GGCAAGCAAGCTGGCAGT 61.301 61.111 21.89 0.00 44.51 4.40
601 679 1.973281 GGCAAGCAAGCTGGCAGTA 60.973 57.895 21.89 0.00 44.51 2.74
602 680 1.505353 GCAAGCAAGCTGGCAGTAG 59.495 57.895 17.28 7.45 42.37 2.57
603 681 1.505353 CAAGCAAGCTGGCAGTAGC 59.495 57.895 17.28 16.75 44.01 3.58
604 682 1.073722 AAGCAAGCTGGCAGTAGCA 59.926 52.632 17.28 0.00 46.07 3.49
605 683 1.239968 AAGCAAGCTGGCAGTAGCAC 61.240 55.000 17.28 8.94 46.07 4.40
606 684 1.673665 GCAAGCTGGCAGTAGCACT 60.674 57.895 17.16 0.59 46.07 4.40
607 685 0.391661 GCAAGCTGGCAGTAGCACTA 60.392 55.000 17.16 0.00 46.07 2.74
608 686 1.649664 CAAGCTGGCAGTAGCACTAG 58.350 55.000 17.16 0.00 46.07 2.57
609 687 1.205655 CAAGCTGGCAGTAGCACTAGA 59.794 52.381 17.16 0.00 46.07 2.43
610 688 0.820871 AGCTGGCAGTAGCACTAGAC 59.179 55.000 17.16 0.00 46.07 2.59
611 689 0.179097 GCTGGCAGTAGCACTAGACC 60.179 60.000 17.16 0.00 44.61 3.85
614 692 1.187087 GGCAGTAGCACTAGACCAGT 58.813 55.000 0.00 0.00 44.61 4.00
617 695 3.018149 GCAGTAGCACTAGACCAGTAGT 58.982 50.000 0.00 0.00 41.58 2.73
634 712 1.930251 AGTAGCAGCTCACTTCCTCA 58.070 50.000 0.00 0.00 0.00 3.86
641 719 3.295093 CAGCTCACTTCCTCATCTCCTA 58.705 50.000 0.00 0.00 0.00 2.94
642 720 3.068024 CAGCTCACTTCCTCATCTCCTAC 59.932 52.174 0.00 0.00 0.00 3.18
645 723 2.043227 CACTTCCTCATCTCCTACCCC 58.957 57.143 0.00 0.00 0.00 4.95
719 808 0.034380 TTGATCTCTCCGTCCGTCCT 60.034 55.000 0.00 0.00 0.00 3.85
720 809 0.464013 TGATCTCTCCGTCCGTCCTC 60.464 60.000 0.00 0.00 0.00 3.71
721 810 1.152922 ATCTCTCCGTCCGTCCTCC 60.153 63.158 0.00 0.00 0.00 4.30
810 901 2.180131 CTCTTGCTGGTGCGTTGCTC 62.180 60.000 0.00 0.00 43.34 4.26
930 1026 2.017049 CCCACCATTTCTTGATCGTCC 58.983 52.381 0.00 0.00 0.00 4.79
932 1028 2.346803 CACCATTTCTTGATCGTCCGT 58.653 47.619 0.00 0.00 0.00 4.69
933 1029 2.348666 CACCATTTCTTGATCGTCCGTC 59.651 50.000 0.00 0.00 0.00 4.79
937 1051 2.860690 TTCTTGATCGTCCGTCGGCG 62.861 60.000 18.16 18.16 40.32 6.46
980 1100 4.696172 GAACGTTCGTGCGTGCGG 62.696 66.667 13.36 0.00 45.00 5.69
1116 1239 4.742201 GACCTGAAGCTCGGCGCA 62.742 66.667 10.83 0.00 42.61 6.09
1405 1534 2.047844 AGCAGTGCAGCAGGTACG 60.048 61.111 19.20 0.00 37.18 3.67
1424 1553 1.842052 GCCCGTTCCCTTTTTCCATA 58.158 50.000 0.00 0.00 0.00 2.74
1429 1558 3.883489 CCGTTCCCTTTTTCCATATCTCC 59.117 47.826 0.00 0.00 0.00 3.71
1452 1581 4.240881 GCATTCCCTGCCGATTCA 57.759 55.556 0.00 0.00 45.66 2.57
1455 1584 1.000938 GCATTCCCTGCCGATTCATTC 60.001 52.381 0.00 0.00 45.66 2.67
1456 1585 4.511783 GCATTCCCTGCCGATTCATTCG 62.512 54.545 0.00 0.00 45.66 3.34
1457 1586 0.251916 TTCCCTGCCGATTCATTCGT 59.748 50.000 0.00 0.00 46.65 3.85
1458 1587 0.251916 TCCCTGCCGATTCATTCGTT 59.748 50.000 0.00 0.00 46.65 3.85
1500 1629 1.884579 TCCACGCTCTCTAACTTCGTT 59.115 47.619 0.00 0.00 0.00 3.85
1520 1649 1.080298 GTTGGCAGCAGCAACATCC 60.080 57.895 2.65 0.00 44.61 3.51
1539 1668 5.709164 ACATCCTTACTACTGTTACTGTCGT 59.291 40.000 0.00 1.61 0.00 4.34
1540 1669 5.869753 TCCTTACTACTGTTACTGTCGTC 57.130 43.478 3.13 0.00 0.00 4.20
1541 1670 4.389992 TCCTTACTACTGTTACTGTCGTCG 59.610 45.833 3.13 0.00 0.00 5.12
1542 1671 4.153117 CCTTACTACTGTTACTGTCGTCGT 59.847 45.833 3.13 0.00 0.00 4.34
1543 1672 5.334414 CCTTACTACTGTTACTGTCGTCGTT 60.334 44.000 3.13 0.00 0.00 3.85
1544 1673 6.128553 CCTTACTACTGTTACTGTCGTCGTTA 60.129 42.308 3.13 0.00 0.00 3.18
1545 1674 5.023551 ACTACTGTTACTGTCGTCGTTAC 57.976 43.478 0.00 0.00 0.00 2.50
1546 1675 4.752101 ACTACTGTTACTGTCGTCGTTACT 59.248 41.667 0.00 0.00 0.00 2.24
1548 1677 3.313526 ACTGTTACTGTCGTCGTTACTGT 59.686 43.478 0.00 0.00 34.07 3.55
1555 1685 1.981533 GTCGTCGTTACTGTAGTTGCC 59.018 52.381 0.00 0.00 0.00 4.52
1667 1866 2.343758 GTCAGCCGGAGCAGTTCA 59.656 61.111 5.05 0.00 43.56 3.18
1780 1980 2.804527 GTCTCCCACTCACCGTAAAAAC 59.195 50.000 0.00 0.00 0.00 2.43
1782 1982 3.064931 CTCCCACTCACCGTAAAAACTC 58.935 50.000 0.00 0.00 0.00 3.01
1793 1993 4.041723 CCGTAAAAACTCACAGCAAAAGG 58.958 43.478 0.00 0.00 0.00 3.11
1833 2033 4.810491 ACACACAAATCCATGTCAAAAAGC 59.190 37.500 0.00 0.00 0.00 3.51
1835 2035 5.467399 CACACAAATCCATGTCAAAAAGCAT 59.533 36.000 0.00 0.00 0.00 3.79
1857 2061 3.005684 TGTTCACCATGGAAAACATCTGC 59.994 43.478 21.47 0.00 37.84 4.26
1873 2082 4.018960 ACATCTGCACTCCTACCTGAAAAT 60.019 41.667 0.00 0.00 0.00 1.82
1879 2088 6.303839 TGCACTCCTACCTGAAAATAAAAGT 58.696 36.000 0.00 0.00 0.00 2.66
1884 2093 9.722184 ACTCCTACCTGAAAATAAAAGTAGAAC 57.278 33.333 0.00 0.00 31.00 3.01
1902 2111 9.847224 AAGTAGAACAAGAGAATTTAACCAAGA 57.153 29.630 0.00 0.00 0.00 3.02
1929 2138 2.104963 GGAGACTGATAAATTCCGGGCT 59.895 50.000 0.00 0.00 0.00 5.19
1930 2139 3.134458 GAGACTGATAAATTCCGGGCTG 58.866 50.000 0.00 0.00 0.00 4.85
1931 2140 1.604278 GACTGATAAATTCCGGGCTGC 59.396 52.381 0.00 0.00 0.00 5.25
1932 2141 0.588252 CTGATAAATTCCGGGCTGCG 59.412 55.000 0.00 0.00 0.00 5.18
2041 2250 2.267961 CCCTGCCCTACAACGACC 59.732 66.667 0.00 0.00 0.00 4.79
2146 2566 4.316823 TCCCTGTCCTCCACCGCT 62.317 66.667 0.00 0.00 0.00 5.52
2147 2567 3.775654 CCCTGTCCTCCACCGCTC 61.776 72.222 0.00 0.00 0.00 5.03
2257 2678 3.006967 TGCTTGTTCTAGAAGACAGGGAC 59.993 47.826 5.12 0.00 0.00 4.46
2258 2679 3.839293 CTTGTTCTAGAAGACAGGGACG 58.161 50.000 5.12 0.00 0.00 4.79
2276 2697 1.616865 ACGAAGGATCTCAACGGTCAA 59.383 47.619 0.00 0.00 0.00 3.18
2277 2698 2.263077 CGAAGGATCTCAACGGTCAAG 58.737 52.381 0.00 0.00 0.00 3.02
2328 2752 4.582656 AGCAAGATTCTAGTCTAGCGTGAT 59.417 41.667 1.60 0.00 0.00 3.06
2354 2778 1.326548 CGGGTGTAATTAAGCTCGTGC 59.673 52.381 0.07 0.07 40.05 5.34
2361 2785 0.103208 ATTAAGCTCGTGCGGAGAGG 59.897 55.000 8.63 0.00 46.23 3.69
2369 2793 2.283894 TGCGGAGAGGAGCTTGGA 60.284 61.111 0.00 0.00 0.00 3.53
2484 2908 7.831753 TGTTTTTCTACAACTTTGTTGATGGA 58.168 30.769 16.04 8.40 41.25 3.41
2525 2950 5.359194 TGGGTCTGTATCTTGAGAAATCC 57.641 43.478 0.00 0.00 0.00 3.01
2528 2953 5.819901 GGGTCTGTATCTTGAGAAATCCTTG 59.180 44.000 0.00 0.00 0.00 3.61
2533 2958 6.768483 TGTATCTTGAGAAATCCTTGTGACA 58.232 36.000 0.00 0.00 0.00 3.58
2545 2970 6.858945 ATCCTTGTGACAGGAGGAAACTGC 62.859 50.000 9.85 0.00 46.60 4.40
2657 3082 3.125376 GCAGCCGGATCCCCTCAAT 62.125 63.158 5.05 0.00 0.00 2.57
2696 3121 0.744874 ATCACCACGGTACTCCATCG 59.255 55.000 0.00 0.00 0.00 3.84
2752 3177 8.073768 ACACTTTTTACATCACGTGGAAATTAG 58.926 33.333 17.00 12.53 40.29 1.73
2756 3181 2.747446 ACATCACGTGGAAATTAGGCAC 59.253 45.455 17.00 0.00 0.00 5.01
2759 3184 0.321298 ACGTGGAAATTAGGCACGCT 60.321 50.000 0.00 0.00 42.21 5.07
2773 3198 1.641577 CACGCTGGCCTAGAAAGTAC 58.358 55.000 3.32 0.00 0.00 2.73
2780 3205 1.139256 GGCCTAGAAAGTACTGCCTCC 59.861 57.143 11.42 0.42 35.99 4.30
2784 3209 3.315749 CCTAGAAAGTACTGCCTCCGTAG 59.684 52.174 0.00 0.00 0.00 3.51
2802 3227 5.236911 TCCGTAGCAAAATGTAAGACGTTTT 59.763 36.000 4.14 4.14 45.25 2.43
2832 3257 5.810074 CCATATGGAAAACCAAAAATCGTCC 59.190 40.000 17.49 0.00 37.39 4.79
2929 3386 2.046285 GGCACTCCCATTTGTCGGG 61.046 63.158 0.00 0.00 46.03 5.14
3010 3558 9.103861 CTGAACTCTATCCCTTTTCTGTTTATC 57.896 37.037 0.00 0.00 0.00 1.75
3186 3736 5.105064 GGTGTAGCAGACCAAGATAGGTTTA 60.105 44.000 0.00 0.00 43.38 2.01
3198 3748 4.844884 AGATAGGTTTACAGTCTTTGGCC 58.155 43.478 0.00 0.00 0.00 5.36
3243 3796 5.595952 GTGGGATCCAAAGCAAGAGAATAAT 59.404 40.000 15.23 0.00 34.18 1.28
3244 3797 6.772716 GTGGGATCCAAAGCAAGAGAATAATA 59.227 38.462 15.23 0.00 34.18 0.98
3340 3894 5.003160 TCACAGTGAATTGAACACCTATGG 58.997 41.667 0.00 0.00 38.82 2.74
3349 3903 4.442401 TGAACACCTATGGCATGATGAT 57.558 40.909 10.98 0.07 0.00 2.45
3356 3910 4.259356 CCTATGGCATGATGATACCACTG 58.741 47.826 10.98 0.00 34.36 3.66
3361 3915 2.747467 GCATGATGATACCACTGGCAGT 60.747 50.000 15.88 15.88 0.00 4.40
3366 3925 3.101643 TGATACCACTGGCAGTCTACT 57.898 47.619 19.13 2.89 0.00 2.57
3367 3926 4.245251 TGATACCACTGGCAGTCTACTA 57.755 45.455 19.13 4.94 0.00 1.82
3368 3927 4.207955 TGATACCACTGGCAGTCTACTAG 58.792 47.826 19.13 5.22 0.00 2.57
3388 3947 6.771573 ACTAGTAGTAGCACTCCTATACCTG 58.228 44.000 0.00 0.00 0.00 4.00
3389 3948 5.908562 AGTAGTAGCACTCCTATACCTGA 57.091 43.478 0.00 0.00 0.00 3.86
3390 3949 6.457159 AGTAGTAGCACTCCTATACCTGAT 57.543 41.667 0.00 0.00 0.00 2.90
3391 3950 7.571071 AGTAGTAGCACTCCTATACCTGATA 57.429 40.000 0.00 0.00 0.00 2.15
3392 3951 7.396418 AGTAGTAGCACTCCTATACCTGATAC 58.604 42.308 0.00 0.00 0.00 2.24
3393 3952 5.572252 AGTAGCACTCCTATACCTGATACC 58.428 45.833 0.00 0.00 0.00 2.73
3394 3953 4.750833 AGCACTCCTATACCTGATACCT 57.249 45.455 0.00 0.00 0.00 3.08
3431 3991 9.627395 TTACCGAAATTTACCATGTTACAATTG 57.373 29.630 3.24 3.24 0.00 2.32
3444 4004 1.826385 ACAATTGAGTAGCAGGGTGC 58.174 50.000 13.59 0.00 45.46 5.01
3537 4097 4.157656 GGCTATTGTCATAGGTTTGCAACA 59.842 41.667 0.00 0.00 33.95 3.33
3545 4105 0.393808 AGGTTTGCAACACTGACGGT 60.394 50.000 0.00 0.00 0.00 4.83
3546 4106 0.454196 GGTTTGCAACACTGACGGTT 59.546 50.000 0.00 0.00 0.00 4.44
3566 4126 4.504340 GGTTGAACTAACTGTTAGCTCCCA 60.504 45.833 23.74 14.59 39.30 4.37
3567 4127 5.246307 GTTGAACTAACTGTTAGCTCCCAT 58.754 41.667 23.74 4.22 39.30 4.00
3568 4128 5.086104 TGAACTAACTGTTAGCTCCCATC 57.914 43.478 23.74 13.98 39.30 3.51
3569 4129 4.530553 TGAACTAACTGTTAGCTCCCATCA 59.469 41.667 23.74 15.82 39.30 3.07
3570 4130 5.189736 TGAACTAACTGTTAGCTCCCATCAT 59.810 40.000 23.74 2.24 39.30 2.45
3572 4132 5.431765 ACTAACTGTTAGCTCCCATCATTG 58.568 41.667 23.74 1.15 36.71 2.82
3743 4305 3.726517 CTTCCACCACGGCAAGCG 61.727 66.667 0.00 0.00 33.14 4.68
4178 4761 1.964448 CCGTCACTACCAGCACAGA 59.036 57.895 0.00 0.00 0.00 3.41
4278 4861 4.740822 AACCACCCGGATGCAGGC 62.741 66.667 0.73 0.00 35.59 4.85
4404 4987 2.437281 AGTGTTAGCCCTGATGATCCTG 59.563 50.000 0.00 0.00 0.00 3.86
4422 5005 4.592942 TCCTGAAGAAATCACCCAAGATG 58.407 43.478 0.00 0.00 33.47 2.90
4471 5054 4.102681 ACTCCTAACTTATGGAAATCCCCG 59.897 45.833 0.00 0.00 34.29 5.73
4490 5074 2.289002 CCGCCTGCTTATGATTCAGAAC 59.711 50.000 0.00 0.00 0.00 3.01
4541 5129 1.202580 TGGTTTGTTCATTTTGGCCGG 60.203 47.619 0.00 0.00 0.00 6.13
4576 5164 2.766263 TGGTAGGGTTACATCAGCAGAG 59.234 50.000 0.00 0.00 0.00 3.35
4587 5175 2.586648 TCAGCAGAGAGTACACAGGA 57.413 50.000 0.00 0.00 0.00 3.86
4590 5178 1.356059 AGCAGAGAGTACACAGGAGGA 59.644 52.381 0.00 0.00 0.00 3.71
4593 5181 3.196685 GCAGAGAGTACACAGGAGGATTT 59.803 47.826 0.00 0.00 0.00 2.17
4594 5182 4.402793 GCAGAGAGTACACAGGAGGATTTA 59.597 45.833 0.00 0.00 0.00 1.40
4595 5183 5.069781 GCAGAGAGTACACAGGAGGATTTAT 59.930 44.000 0.00 0.00 0.00 1.40
4596 5184 6.407525 GCAGAGAGTACACAGGAGGATTTATT 60.408 42.308 0.00 0.00 0.00 1.40
4597 5185 7.560368 CAGAGAGTACACAGGAGGATTTATTT 58.440 38.462 0.00 0.00 0.00 1.40
4639 5227 9.120538 TGGAGTTAGCATAAAAATATTCAGGTC 57.879 33.333 0.00 0.00 0.00 3.85
4640 5228 9.120538 GGAGTTAGCATAAAAATATTCAGGTCA 57.879 33.333 0.00 0.00 0.00 4.02
4662 5251 7.043458 GGTCATTGTTATTTAAATCATGTGCGG 60.043 37.037 3.39 0.00 0.00 5.69
4733 5322 8.308207 GGAACAGTAACTAGATTATCCAGGATC 58.692 40.741 4.75 0.00 0.00 3.36
4777 5366 3.577649 TCTAGCTAGGCGCATATGTTC 57.422 47.619 20.58 0.00 42.61 3.18
4781 5370 2.103094 AGCTAGGCGCATATGTTCTCAA 59.897 45.455 10.83 0.00 42.61 3.02
4794 5383 8.566260 GCATATGTTCTCAAAATTCAGATAGCT 58.434 33.333 4.29 0.00 0.00 3.32
4877 5466 8.087982 ACAGTAAAGTACATGTTGAAGATGTG 57.912 34.615 17.04 1.68 35.62 3.21
4880 5469 4.019792 AGTACATGTTGAAGATGTGGCA 57.980 40.909 17.04 0.00 35.62 4.92
4905 5494 4.258543 TGGGAGTCCACATAATTCGTTTC 58.741 43.478 12.30 0.00 38.32 2.78
4908 5497 5.163754 GGGAGTCCACATAATTCGTTTCAAG 60.164 44.000 12.30 0.00 0.00 3.02
4918 5507 5.766150 AATTCGTTTCAAGTCCATGTTCA 57.234 34.783 0.00 0.00 0.00 3.18
4947 5536 7.072263 AGAGTGATTGTTTGAGGATATAGGG 57.928 40.000 0.00 0.00 0.00 3.53
4952 5541 6.797540 TGATTGTTTGAGGATATAGGGGGTAT 59.202 38.462 0.00 0.00 0.00 2.73
4956 5545 6.215431 TGTTTGAGGATATAGGGGGTATCATG 59.785 42.308 0.00 0.00 31.61 3.07
4957 5546 5.831634 TGAGGATATAGGGGGTATCATGA 57.168 43.478 0.00 0.00 31.61 3.07
4959 5548 6.766795 TGAGGATATAGGGGGTATCATGATT 58.233 40.000 14.65 0.00 31.61 2.57
4975 5564 7.630242 ATCATGATTACAGGTAACCAAACAG 57.370 36.000 1.18 0.00 37.17 3.16
4986 5575 2.080654 ACCAAACAGGCCAAAGCTAA 57.919 45.000 5.01 0.00 43.14 3.09
4988 5577 3.773560 ACCAAACAGGCCAAAGCTAATA 58.226 40.909 5.01 0.00 43.14 0.98
4993 5582 0.916809 AGGCCAAAGCTAATACCGGT 59.083 50.000 13.98 13.98 39.73 5.28
4995 5584 1.404035 GGCCAAAGCTAATACCGGTTG 59.596 52.381 15.04 1.08 39.73 3.77
4997 5586 2.354821 GCCAAAGCTAATACCGGTTGAG 59.645 50.000 15.04 9.20 35.50 3.02
5003 5592 5.672421 AGCTAATACCGGTTGAGTAAAGT 57.328 39.130 15.04 0.00 0.00 2.66
5014 5603 7.011389 ACCGGTTGAGTAAAGTTGTAGTTTTAC 59.989 37.037 0.00 0.19 39.10 2.01
5018 5607 9.659830 GTTGAGTAAAGTTGTAGTTTTACCATG 57.340 33.333 4.12 0.00 39.45 3.66
5020 5609 7.040961 TGAGTAAAGTTGTAGTTTTACCATGCC 60.041 37.037 4.12 0.00 39.45 4.40
5089 5685 7.775093 AGATCTTATTGGTGTAAGCTTATTGCA 59.225 33.333 9.88 0.00 45.94 4.08
5090 5686 7.695480 TCTTATTGGTGTAAGCTTATTGCAA 57.305 32.000 9.88 0.00 45.94 4.08
5099 5695 8.009409 GGTGTAAGCTTATTGCAAAAATTGTTC 58.991 33.333 9.88 0.00 45.94 3.18
5109 5705 5.983540 TGCAAAAATTGTTCTAAGGGTGTT 58.016 33.333 0.00 0.00 0.00 3.32
5125 5721 3.440522 GGGTGTTGCTAAATCTCAAGTCC 59.559 47.826 0.00 0.00 0.00 3.85
5127 5723 4.072131 GTGTTGCTAAATCTCAAGTCCCA 58.928 43.478 0.00 0.00 0.00 4.37
5207 5803 6.903883 ATACAGAATTGTACTAAACCAGCG 57.096 37.500 0.00 0.00 42.29 5.18
5208 5804 4.890088 ACAGAATTGTACTAAACCAGCGA 58.110 39.130 0.00 0.00 35.25 4.93
5209 5805 5.488341 ACAGAATTGTACTAAACCAGCGAT 58.512 37.500 0.00 0.00 35.25 4.58
5210 5806 6.636705 ACAGAATTGTACTAAACCAGCGATA 58.363 36.000 0.00 0.00 35.25 2.92
5211 5807 7.101054 ACAGAATTGTACTAAACCAGCGATAA 58.899 34.615 0.00 0.00 35.25 1.75
5212 5808 7.769044 ACAGAATTGTACTAAACCAGCGATAAT 59.231 33.333 0.00 0.00 35.25 1.28
5213 5809 8.612619 CAGAATTGTACTAAACCAGCGATAATT 58.387 33.333 0.00 0.00 0.00 1.40
5214 5810 9.826574 AGAATTGTACTAAACCAGCGATAATTA 57.173 29.630 0.00 0.00 0.00 1.40
5222 5818 9.216117 ACTAAACCAGCGATAATTAATATGGAC 57.784 33.333 13.33 0.00 0.00 4.02
5223 5819 7.448748 AAACCAGCGATAATTAATATGGACC 57.551 36.000 13.33 0.00 0.00 4.46
5224 5820 5.175859 ACCAGCGATAATTAATATGGACCG 58.824 41.667 13.33 0.00 0.00 4.79
5225 5821 5.046878 ACCAGCGATAATTAATATGGACCGA 60.047 40.000 13.33 0.00 0.00 4.69
5226 5822 5.872617 CCAGCGATAATTAATATGGACCGAA 59.127 40.000 0.00 0.00 0.00 4.30
5227 5823 6.036083 CCAGCGATAATTAATATGGACCGAAG 59.964 42.308 0.00 0.00 0.00 3.79
5228 5824 6.811665 CAGCGATAATTAATATGGACCGAAGA 59.188 38.462 0.00 0.00 0.00 2.87
5229 5825 7.009631 CAGCGATAATTAATATGGACCGAAGAG 59.990 40.741 0.00 0.00 0.00 2.85
5230 5826 7.033791 GCGATAATTAATATGGACCGAAGAGA 58.966 38.462 0.00 0.00 0.00 3.10
5231 5827 7.221067 GCGATAATTAATATGGACCGAAGAGAG 59.779 40.741 0.00 0.00 0.00 3.20
5232 5828 7.221067 CGATAATTAATATGGACCGAAGAGAGC 59.779 40.741 0.00 0.00 0.00 4.09
5233 5829 5.808366 ATTAATATGGACCGAAGAGAGCA 57.192 39.130 0.00 0.00 0.00 4.26
5234 5830 5.607939 TTAATATGGACCGAAGAGAGCAA 57.392 39.130 0.00 0.00 0.00 3.91
5235 5831 4.487714 AATATGGACCGAAGAGAGCAAA 57.512 40.909 0.00 0.00 0.00 3.68
5236 5832 2.859165 ATGGACCGAAGAGAGCAAAA 57.141 45.000 0.00 0.00 0.00 2.44
5237 5833 2.859165 TGGACCGAAGAGAGCAAAAT 57.141 45.000 0.00 0.00 0.00 1.82
5238 5834 3.140325 TGGACCGAAGAGAGCAAAATT 57.860 42.857 0.00 0.00 0.00 1.82
5239 5835 3.486383 TGGACCGAAGAGAGCAAAATTT 58.514 40.909 0.00 0.00 0.00 1.82
5240 5836 3.888930 TGGACCGAAGAGAGCAAAATTTT 59.111 39.130 0.00 0.00 0.00 1.82
5241 5837 5.067273 TGGACCGAAGAGAGCAAAATTTTA 58.933 37.500 2.44 0.00 0.00 1.52
5242 5838 5.181245 TGGACCGAAGAGAGCAAAATTTTAG 59.819 40.000 2.44 0.00 0.00 1.85
5243 5839 5.392057 GGACCGAAGAGAGCAAAATTTTAGG 60.392 44.000 2.44 0.00 0.00 2.69
5244 5840 5.313712 ACCGAAGAGAGCAAAATTTTAGGA 58.686 37.500 2.44 0.00 0.00 2.94
5245 5841 5.412904 ACCGAAGAGAGCAAAATTTTAGGAG 59.587 40.000 2.44 0.00 0.00 3.69
5246 5842 5.163713 CCGAAGAGAGCAAAATTTTAGGAGG 60.164 44.000 2.44 0.00 0.00 4.30
5247 5843 5.643777 CGAAGAGAGCAAAATTTTAGGAGGA 59.356 40.000 2.44 0.00 0.00 3.71
5248 5844 6.149474 CGAAGAGAGCAAAATTTTAGGAGGAA 59.851 38.462 2.44 0.00 0.00 3.36
5249 5845 6.825944 AGAGAGCAAAATTTTAGGAGGAAC 57.174 37.500 2.44 0.00 0.00 3.62
5250 5846 5.712446 AGAGAGCAAAATTTTAGGAGGAACC 59.288 40.000 2.44 0.00 39.35 3.62
5251 5847 4.772624 AGAGCAAAATTTTAGGAGGAACCC 59.227 41.667 2.44 0.00 40.05 4.11
5252 5848 4.752063 AGCAAAATTTTAGGAGGAACCCT 58.248 39.130 2.44 0.00 40.05 4.34
5253 5849 5.899278 AGCAAAATTTTAGGAGGAACCCTA 58.101 37.500 2.44 0.00 40.05 3.53
5254 5850 6.503041 AGCAAAATTTTAGGAGGAACCCTAT 58.497 36.000 2.44 0.00 38.50 2.57
5255 5851 7.648770 AGCAAAATTTTAGGAGGAACCCTATA 58.351 34.615 2.44 0.00 38.50 1.31
5256 5852 8.119891 AGCAAAATTTTAGGAGGAACCCTATAA 58.880 33.333 2.44 0.00 38.50 0.98
5257 5853 8.755028 GCAAAATTTTAGGAGGAACCCTATAAA 58.245 33.333 2.44 0.00 38.50 1.40
5264 5860 6.189036 AGGAGGAACCCTATAAATTGTAGC 57.811 41.667 0.00 0.00 40.05 3.58
5265 5861 5.073280 AGGAGGAACCCTATAAATTGTAGCC 59.927 44.000 0.00 0.00 40.05 3.93
5266 5862 5.163131 GGAGGAACCCTATAAATTGTAGCCA 60.163 44.000 0.00 0.00 31.76 4.75
5267 5863 5.941788 AGGAACCCTATAAATTGTAGCCAG 58.058 41.667 0.00 0.00 28.47 4.85
5268 5864 5.432060 AGGAACCCTATAAATTGTAGCCAGT 59.568 40.000 0.00 0.00 28.47 4.00
5269 5865 6.069029 AGGAACCCTATAAATTGTAGCCAGTT 60.069 38.462 0.00 0.00 28.47 3.16
5270 5866 7.128263 AGGAACCCTATAAATTGTAGCCAGTTA 59.872 37.037 0.00 0.00 28.47 2.24
5271 5867 7.776500 GGAACCCTATAAATTGTAGCCAGTTAA 59.224 37.037 0.00 0.00 0.00 2.01
5272 5868 8.515695 AACCCTATAAATTGTAGCCAGTTAAC 57.484 34.615 0.00 0.00 0.00 2.01
5273 5869 7.868974 ACCCTATAAATTGTAGCCAGTTAACT 58.131 34.615 1.12 1.12 0.00 2.24
5274 5870 7.991460 ACCCTATAAATTGTAGCCAGTTAACTC 59.009 37.037 4.77 0.00 0.00 3.01
5275 5871 7.990886 CCCTATAAATTGTAGCCAGTTAACTCA 59.009 37.037 4.77 0.00 0.00 3.41
5276 5872 9.046296 CCTATAAATTGTAGCCAGTTAACTCAG 57.954 37.037 4.77 1.26 0.00 3.35
5277 5873 9.817809 CTATAAATTGTAGCCAGTTAACTCAGA 57.182 33.333 4.77 0.00 0.00 3.27
5279 5875 7.440523 AAATTGTAGCCAGTTAACTCAGAAG 57.559 36.000 4.77 0.00 0.00 2.85
5280 5876 5.546621 TTGTAGCCAGTTAACTCAGAAGT 57.453 39.130 4.77 0.00 37.32 3.01
5281 5877 4.883083 TGTAGCCAGTTAACTCAGAAGTG 58.117 43.478 4.77 0.00 35.36 3.16
5282 5878 2.772287 AGCCAGTTAACTCAGAAGTGC 58.228 47.619 4.77 0.93 35.36 4.40
5283 5879 2.370189 AGCCAGTTAACTCAGAAGTGCT 59.630 45.455 4.77 3.12 35.36 4.40
5284 5880 3.142174 GCCAGTTAACTCAGAAGTGCTT 58.858 45.455 4.77 0.00 35.36 3.91
5285 5881 3.187432 GCCAGTTAACTCAGAAGTGCTTC 59.813 47.826 4.77 3.89 39.78 3.86
5286 5882 4.380531 CCAGTTAACTCAGAAGTGCTTCA 58.619 43.478 4.77 0.00 41.84 3.02
5287 5883 4.816385 CCAGTTAACTCAGAAGTGCTTCAA 59.184 41.667 4.77 1.76 41.84 2.69
5288 5884 5.277538 CCAGTTAACTCAGAAGTGCTTCAAC 60.278 44.000 4.77 8.12 41.84 3.18
5289 5885 4.816925 AGTTAACTCAGAAGTGCTTCAACC 59.183 41.667 13.58 0.00 41.84 3.77
5290 5886 3.281727 AACTCAGAAGTGCTTCAACCA 57.718 42.857 13.58 0.00 41.84 3.67
5291 5887 3.281727 ACTCAGAAGTGCTTCAACCAA 57.718 42.857 13.58 0.00 41.84 3.67
5292 5888 3.825328 ACTCAGAAGTGCTTCAACCAAT 58.175 40.909 13.58 0.00 41.84 3.16
5293 5889 3.567164 ACTCAGAAGTGCTTCAACCAATG 59.433 43.478 13.58 3.22 41.84 2.82
5294 5890 3.554934 TCAGAAGTGCTTCAACCAATGT 58.445 40.909 13.58 0.00 41.84 2.71
5295 5891 3.316029 TCAGAAGTGCTTCAACCAATGTG 59.684 43.478 13.58 1.98 41.84 3.21
5296 5892 2.624838 AGAAGTGCTTCAACCAATGTGG 59.375 45.455 13.58 0.00 41.82 4.17
5297 5893 3.941178 AGAAGTGCTTCAACCAATGTGGT 60.941 43.478 13.58 0.00 44.15 4.16
5298 5894 5.998189 AGAAGTGCTTCAACCAATGTGGTG 61.998 45.833 13.58 0.00 44.77 4.17
5308 5904 3.581024 CCAATGTGGTGGAGTTTGATG 57.419 47.619 0.00 0.00 41.65 3.07
5309 5905 2.353011 CCAATGTGGTGGAGTTTGATGC 60.353 50.000 0.00 0.00 41.65 3.91
5310 5906 1.549203 ATGTGGTGGAGTTTGATGCC 58.451 50.000 0.00 0.00 0.00 4.40
5311 5907 0.888736 TGTGGTGGAGTTTGATGCCG 60.889 55.000 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 35 2.163211 GTGCAAATGGAGGAAAGAGAGC 59.837 50.000 0.00 0.00 0.00 4.09
32 37 3.328931 AGAGTGCAAATGGAGGAAAGAGA 59.671 43.478 0.00 0.00 0.00 3.10
40 45 3.448301 AGAGAGAGAGAGTGCAAATGGAG 59.552 47.826 0.00 0.00 0.00 3.86
44 49 3.701040 GGAGAGAGAGAGAGAGTGCAAAT 59.299 47.826 0.00 0.00 0.00 2.32
46 51 2.620367 GGGAGAGAGAGAGAGAGTGCAA 60.620 54.545 0.00 0.00 0.00 4.08
47 52 1.064758 GGGAGAGAGAGAGAGAGTGCA 60.065 57.143 0.00 0.00 0.00 4.57
48 53 1.212935 AGGGAGAGAGAGAGAGAGTGC 59.787 57.143 0.00 0.00 0.00 4.40
49 54 2.774234 AGAGGGAGAGAGAGAGAGAGTG 59.226 54.545 0.00 0.00 0.00 3.51
50 55 3.041946 GAGAGGGAGAGAGAGAGAGAGT 58.958 54.545 0.00 0.00 0.00 3.24
51 56 3.070734 CAGAGAGGGAGAGAGAGAGAGAG 59.929 56.522 0.00 0.00 0.00 3.20
52 57 3.041211 CAGAGAGGGAGAGAGAGAGAGA 58.959 54.545 0.00 0.00 0.00 3.10
54 59 1.490490 GCAGAGAGGGAGAGAGAGAGA 59.510 57.143 0.00 0.00 0.00 3.10
58 63 0.923729 AGGGCAGAGAGGGAGAGAGA 60.924 60.000 0.00 0.00 0.00 3.10
66 71 4.154347 GTGGCGAGGGCAGAGAGG 62.154 72.222 0.00 0.00 42.47 3.69
115 120 1.285950 GAAAGAAACCAGTGCCGCC 59.714 57.895 0.00 0.00 0.00 6.13
118 123 1.285950 GCGGAAAGAAACCAGTGCC 59.714 57.895 0.00 0.00 0.00 5.01
170 182 2.593026 GATGTACAGAGAGAGAGGGGG 58.407 57.143 0.33 0.00 0.00 5.40
171 183 2.226330 CGATGTACAGAGAGAGAGGGG 58.774 57.143 0.33 0.00 0.00 4.79
172 184 1.606668 GCGATGTACAGAGAGAGAGGG 59.393 57.143 0.33 0.00 0.00 4.30
173 185 2.290367 CTGCGATGTACAGAGAGAGAGG 59.710 54.545 0.33 0.00 37.32 3.69
174 186 2.290367 CCTGCGATGTACAGAGAGAGAG 59.710 54.545 0.33 0.00 37.32 3.20
175 187 2.293170 CCTGCGATGTACAGAGAGAGA 58.707 52.381 0.33 0.00 37.32 3.10
176 188 1.268999 GCCTGCGATGTACAGAGAGAG 60.269 57.143 0.33 0.00 37.32 3.20
177 189 0.741326 GCCTGCGATGTACAGAGAGA 59.259 55.000 0.33 0.00 37.32 3.10
178 190 0.593518 CGCCTGCGATGTACAGAGAG 60.594 60.000 5.43 0.00 42.83 3.20
179 191 1.313091 ACGCCTGCGATGTACAGAGA 61.313 55.000 19.52 0.00 42.83 3.10
180 192 0.380733 TACGCCTGCGATGTACAGAG 59.619 55.000 19.52 0.00 42.83 3.35
181 193 0.099968 GTACGCCTGCGATGTACAGA 59.900 55.000 19.52 0.00 42.83 3.41
182 194 0.870307 GGTACGCCTGCGATGTACAG 60.870 60.000 19.52 0.00 40.10 2.74
183 195 1.140161 GGTACGCCTGCGATGTACA 59.860 57.895 19.52 0.00 40.10 2.90
184 196 4.008035 GGTACGCCTGCGATGTAC 57.992 61.111 19.52 10.08 42.83 2.90
224 236 7.064728 GCTTTAGTAGATTTTACCACTCCACTG 59.935 40.741 0.00 0.00 0.00 3.66
225 237 7.104290 GCTTTAGTAGATTTTACCACTCCACT 58.896 38.462 0.00 0.00 0.00 4.00
227 239 6.071221 TCGCTTTAGTAGATTTTACCACTCCA 60.071 38.462 0.00 0.00 0.00 3.86
240 252 2.352034 CTCACTCGCTCGCTTTAGTAGA 59.648 50.000 0.00 0.00 0.00 2.59
241 253 2.096174 ACTCACTCGCTCGCTTTAGTAG 59.904 50.000 0.00 0.00 0.00 2.57
242 254 2.082231 ACTCACTCGCTCGCTTTAGTA 58.918 47.619 0.00 0.00 0.00 1.82
243 255 0.882474 ACTCACTCGCTCGCTTTAGT 59.118 50.000 0.00 0.00 0.00 2.24
410 434 4.026357 GGGGGAGGGAGGTGAGGT 62.026 72.222 0.00 0.00 0.00 3.85
427 451 4.465446 TGAGGGCGAGGAGGGAGG 62.465 72.222 0.00 0.00 0.00 4.30
428 452 3.151022 GTGAGGGCGAGGAGGGAG 61.151 72.222 0.00 0.00 0.00 4.30
429 453 4.779733 GGTGAGGGCGAGGAGGGA 62.780 72.222 0.00 0.00 0.00 4.20
431 455 4.787280 AGGGTGAGGGCGAGGAGG 62.787 72.222 0.00 0.00 0.00 4.30
432 456 3.151022 GAGGGTGAGGGCGAGGAG 61.151 72.222 0.00 0.00 0.00 3.69
433 457 3.663815 GAGAGGGTGAGGGCGAGGA 62.664 68.421 0.00 0.00 0.00 3.71
434 458 3.151022 GAGAGGGTGAGGGCGAGG 61.151 72.222 0.00 0.00 0.00 4.63
435 459 2.043450 AGAGAGGGTGAGGGCGAG 60.043 66.667 0.00 0.00 0.00 5.03
436 460 2.043852 GAGAGAGGGTGAGGGCGA 60.044 66.667 0.00 0.00 0.00 5.54
437 461 2.043450 AGAGAGAGGGTGAGGGCG 60.043 66.667 0.00 0.00 0.00 6.13
438 462 1.760480 GGAGAGAGAGGGTGAGGGC 60.760 68.421 0.00 0.00 0.00 5.19
439 463 1.454847 CGGAGAGAGAGGGTGAGGG 60.455 68.421 0.00 0.00 0.00 4.30
440 464 2.124693 GCGGAGAGAGAGGGTGAGG 61.125 68.421 0.00 0.00 0.00 3.86
442 466 2.043852 GGCGGAGAGAGAGGGTGA 60.044 66.667 0.00 0.00 0.00 4.02
444 468 2.937959 GATGGGCGGAGAGAGAGGGT 62.938 65.000 0.00 0.00 0.00 4.34
466 507 3.055385 CCAACCCCGATGAGAGAAAGTTA 60.055 47.826 0.00 0.00 0.00 2.24
499 542 2.562298 CAGTGGAGAGTGAAGAAGAGCT 59.438 50.000 0.00 0.00 0.00 4.09
500 543 2.298729 ACAGTGGAGAGTGAAGAAGAGC 59.701 50.000 0.00 0.00 0.00 4.09
501 544 4.202202 ACAACAGTGGAGAGTGAAGAAGAG 60.202 45.833 0.00 0.00 0.00 2.85
502 545 3.706594 ACAACAGTGGAGAGTGAAGAAGA 59.293 43.478 0.00 0.00 0.00 2.87
505 548 3.300388 AGACAACAGTGGAGAGTGAAGA 58.700 45.455 0.00 0.00 0.00 2.87
507 550 3.181465 GGAAGACAACAGTGGAGAGTGAA 60.181 47.826 0.00 0.00 0.00 3.18
523 581 0.179070 GATGGGCGGAGAAGGAAGAC 60.179 60.000 0.00 0.00 0.00 3.01
595 673 1.187087 ACTGGTCTAGTGCTACTGCC 58.813 55.000 0.00 0.00 38.49 4.85
596 674 3.018149 ACTACTGGTCTAGTGCTACTGC 58.982 50.000 0.00 0.00 40.65 4.40
597 675 4.273969 GCTACTACTGGTCTAGTGCTACTG 59.726 50.000 0.00 0.00 40.65 2.74
598 676 4.080469 TGCTACTACTGGTCTAGTGCTACT 60.080 45.833 0.00 0.00 40.65 2.57
599 677 4.197750 TGCTACTACTGGTCTAGTGCTAC 58.802 47.826 0.00 0.00 40.65 3.58
600 678 4.452825 CTGCTACTACTGGTCTAGTGCTA 58.547 47.826 0.00 0.00 40.65 3.49
601 679 3.283751 CTGCTACTACTGGTCTAGTGCT 58.716 50.000 0.00 0.00 40.65 4.40
602 680 2.223618 GCTGCTACTACTGGTCTAGTGC 60.224 54.545 0.00 0.00 40.65 4.40
603 681 3.283751 AGCTGCTACTACTGGTCTAGTG 58.716 50.000 0.00 0.00 40.65 2.74
604 682 3.054287 TGAGCTGCTACTACTGGTCTAGT 60.054 47.826 0.15 0.00 43.56 2.57
605 683 3.314080 GTGAGCTGCTACTACTGGTCTAG 59.686 52.174 0.15 0.00 37.05 2.43
606 684 3.054287 AGTGAGCTGCTACTACTGGTCTA 60.054 47.826 0.15 0.00 37.05 2.59
607 685 2.096248 GTGAGCTGCTACTACTGGTCT 58.904 52.381 0.15 0.00 37.05 3.85
608 686 2.096248 AGTGAGCTGCTACTACTGGTC 58.904 52.381 0.15 0.00 36.77 4.02
609 687 2.223803 AGTGAGCTGCTACTACTGGT 57.776 50.000 0.15 0.00 0.00 4.00
610 688 2.159170 GGAAGTGAGCTGCTACTACTGG 60.159 54.545 0.15 0.00 0.00 4.00
611 689 2.757868 AGGAAGTGAGCTGCTACTACTG 59.242 50.000 0.15 0.00 0.00 2.74
614 692 3.087370 TGAGGAAGTGAGCTGCTACTA 57.913 47.619 0.15 0.00 0.00 1.82
617 695 2.692557 GAGATGAGGAAGTGAGCTGCTA 59.307 50.000 0.15 0.00 0.00 3.49
634 712 0.326618 CACCACCAGGGGTAGGAGAT 60.327 60.000 0.00 0.00 39.79 2.75
641 719 4.855230 ACCACCACCACCAGGGGT 62.855 66.667 0.00 0.00 43.56 4.95
642 720 4.284550 CACCACCACCACCAGGGG 62.285 72.222 0.00 0.00 42.91 4.79
645 723 3.498071 ACCCACCACCACCACCAG 61.498 66.667 0.00 0.00 0.00 4.00
810 901 3.963129 AGAAGAGGGAGAGAGTACAGTG 58.037 50.000 0.00 0.00 0.00 3.66
887 978 5.092554 GCTTAAAAAGGCTCTCCTCTACT 57.907 43.478 0.00 0.00 43.40 2.57
937 1051 2.760385 CCTCTCCTGGTCGGACCC 60.760 72.222 23.81 7.15 37.50 4.46
940 1054 1.007238 AGAATTCCTCTCCTGGTCGGA 59.993 52.381 0.65 0.00 40.30 4.55
980 1100 0.095762 GCCAAATACACACGTACGCC 59.904 55.000 16.72 0.00 0.00 5.68
1405 1534 1.842052 TATGGAAAAAGGGAACGGGC 58.158 50.000 0.00 0.00 0.00 6.13
1424 1553 2.203070 GGAATGCACGGCGGAGAT 60.203 61.111 13.24 0.00 0.00 2.75
1452 1581 2.187958 TGGATGTCAGAGGGAACGAAT 58.812 47.619 0.00 0.00 0.00 3.34
1455 1584 1.202580 GGATGGATGTCAGAGGGAACG 60.203 57.143 0.00 0.00 0.00 3.95
1456 1585 1.202580 CGGATGGATGTCAGAGGGAAC 60.203 57.143 0.00 0.00 0.00 3.62
1457 1586 1.123077 CGGATGGATGTCAGAGGGAA 58.877 55.000 0.00 0.00 0.00 3.97
1458 1587 0.032117 ACGGATGGATGTCAGAGGGA 60.032 55.000 0.00 0.00 0.00 4.20
1500 1629 1.855213 GATGTTGCTGCTGCCAACGA 61.855 55.000 13.47 8.59 38.71 3.85
1520 1649 5.274881 ACGACGACAGTAACAGTAGTAAG 57.725 43.478 0.00 0.00 0.00 2.34
1539 1668 1.336148 CCACGGCAACTACAGTAACGA 60.336 52.381 0.00 0.00 0.00 3.85
1540 1669 1.065358 CCACGGCAACTACAGTAACG 58.935 55.000 0.00 0.00 0.00 3.18
1541 1670 2.159327 ACCACGGCAACTACAGTAAC 57.841 50.000 0.00 0.00 0.00 2.50
1542 1671 2.873472 CAAACCACGGCAACTACAGTAA 59.127 45.455 0.00 0.00 0.00 2.24
1543 1672 2.158928 ACAAACCACGGCAACTACAGTA 60.159 45.455 0.00 0.00 0.00 2.74
1544 1673 1.305201 CAAACCACGGCAACTACAGT 58.695 50.000 0.00 0.00 0.00 3.55
1545 1674 1.305201 ACAAACCACGGCAACTACAG 58.695 50.000 0.00 0.00 0.00 2.74
1546 1675 1.752683 AACAAACCACGGCAACTACA 58.247 45.000 0.00 0.00 0.00 2.74
1548 1677 2.366533 TGAAACAAACCACGGCAACTA 58.633 42.857 0.00 0.00 0.00 2.24
1555 1685 1.268335 CCGGAGTTGAAACAAACCACG 60.268 52.381 0.00 0.00 32.62 4.94
1667 1866 0.322816 ATCATGGCCAAAGCGACAGT 60.323 50.000 10.96 0.00 41.24 3.55
1780 1980 2.031120 TGGGTTTCCTTTTGCTGTGAG 58.969 47.619 0.00 0.00 0.00 3.51
1782 1982 1.756538 AGTGGGTTTCCTTTTGCTGTG 59.243 47.619 0.00 0.00 0.00 3.66
1793 1993 4.991687 TGTGTGTTTTTCAAAGTGGGTTTC 59.008 37.500 0.00 0.00 0.00 2.78
1835 2035 3.005684 GCAGATGTTTTCCATGGTGAACA 59.994 43.478 26.33 26.33 36.55 3.18
1857 2061 9.720769 TTCTACTTTTATTTTCAGGTAGGAGTG 57.279 33.333 0.00 0.00 0.00 3.51
1879 2088 7.386848 CCGTCTTGGTTAAATTCTCTTGTTCTA 59.613 37.037 0.00 0.00 0.00 2.10
1884 2093 5.122396 CCTCCGTCTTGGTTAAATTCTCTTG 59.878 44.000 0.00 0.00 39.52 3.02
1886 2095 4.323562 CCCTCCGTCTTGGTTAAATTCTCT 60.324 45.833 0.00 0.00 39.52 3.10
1901 2110 4.501743 GGAATTTATCAGTCTCCCTCCGTC 60.502 50.000 0.00 0.00 0.00 4.79
1902 2111 3.388350 GGAATTTATCAGTCTCCCTCCGT 59.612 47.826 0.00 0.00 0.00 4.69
1932 2141 4.131088 GTCCGGGACCAGACGCTC 62.131 72.222 16.55 0.00 0.00 5.03
2054 2263 4.704833 TCCAGTTCCAGCCAGCGC 62.705 66.667 0.00 0.00 0.00 5.92
2257 2678 2.263077 CTTGACCGTTGAGATCCTTCG 58.737 52.381 0.00 0.00 0.00 3.79
2258 2679 2.003301 GCTTGACCGTTGAGATCCTTC 58.997 52.381 0.00 0.00 0.00 3.46
2276 2697 0.035534 TTACACGGCCACATCATGCT 60.036 50.000 2.24 0.00 0.00 3.79
2277 2698 1.024271 ATTACACGGCCACATCATGC 58.976 50.000 2.24 0.00 0.00 4.06
2316 2740 1.404391 CCGTAACCATCACGCTAGACT 59.596 52.381 0.00 0.00 38.07 3.24
2317 2741 1.535437 CCCGTAACCATCACGCTAGAC 60.535 57.143 0.00 0.00 38.07 2.59
2318 2742 0.742505 CCCGTAACCATCACGCTAGA 59.257 55.000 0.00 0.00 38.07 2.43
2319 2743 0.458669 ACCCGTAACCATCACGCTAG 59.541 55.000 0.00 0.00 38.07 3.42
2320 2744 0.173935 CACCCGTAACCATCACGCTA 59.826 55.000 0.00 0.00 38.07 4.26
2321 2745 1.079405 CACCCGTAACCATCACGCT 60.079 57.895 0.00 0.00 38.07 5.07
2328 2752 4.506758 GAGCTTAATTACACCCGTAACCA 58.493 43.478 0.00 0.00 40.35 3.67
2354 2778 2.409948 ATTTTCCAAGCTCCTCTCCG 57.590 50.000 0.00 0.00 0.00 4.63
2361 2785 0.108662 CGCCCCAATTTTCCAAGCTC 60.109 55.000 0.00 0.00 0.00 4.09
2369 2793 2.291282 TGGAGATACACGCCCCAATTTT 60.291 45.455 0.00 0.00 37.67 1.82
2496 2921 8.477419 TTCTCAAGATACAGACCCAAAATTTT 57.523 30.769 0.00 0.00 0.00 1.82
2504 2929 5.622346 AGGATTTCTCAAGATACAGACCC 57.378 43.478 0.00 0.00 0.00 4.46
2506 2931 7.064016 GTCACAAGGATTTCTCAAGATACAGAC 59.936 40.741 0.00 0.00 0.00 3.51
2525 2950 1.876156 GCAGTTTCCTCCTGTCACAAG 59.124 52.381 0.00 0.00 32.41 3.16
2528 2953 1.202698 ACAGCAGTTTCCTCCTGTCAC 60.203 52.381 0.00 0.00 33.57 3.67
2533 2958 1.322442 GCAAACAGCAGTTTCCTCCT 58.678 50.000 3.98 0.00 45.80 3.69
2545 2970 2.137523 GCAAATGGAACCTGCAAACAG 58.862 47.619 0.00 0.00 44.05 3.16
2719 3144 8.500773 CCACGTGATGTAAAAAGTGTTACTATT 58.499 33.333 19.30 0.00 35.41 1.73
2720 3145 7.874016 TCCACGTGATGTAAAAAGTGTTACTAT 59.126 33.333 19.30 0.00 35.41 2.12
2723 3148 6.289745 TCCACGTGATGTAAAAAGTGTTAC 57.710 37.500 19.30 0.00 35.02 2.50
2726 3151 5.821516 TTTCCACGTGATGTAAAAAGTGT 57.178 34.783 19.30 0.00 0.00 3.55
2728 3153 7.590279 CCTAATTTCCACGTGATGTAAAAAGT 58.410 34.615 19.30 8.93 0.00 2.66
2732 3157 5.004448 TGCCTAATTTCCACGTGATGTAAA 58.996 37.500 19.30 11.88 0.00 2.01
2738 3163 1.434555 CGTGCCTAATTTCCACGTGA 58.565 50.000 19.30 0.00 45.08 4.35
2756 3181 1.927895 CAGTACTTTCTAGGCCAGCG 58.072 55.000 5.01 0.00 0.00 5.18
2759 3184 1.831736 GAGGCAGTACTTTCTAGGCCA 59.168 52.381 18.75 0.00 43.72 5.36
2773 3198 1.453155 ACATTTTGCTACGGAGGCAG 58.547 50.000 0.00 0.00 40.90 4.85
2780 3205 6.963017 AAAAACGTCTTACATTTTGCTACG 57.037 33.333 0.00 0.00 35.17 3.51
2814 3239 5.441709 TGTAGGACGATTTTTGGTTTTCC 57.558 39.130 0.00 0.00 41.14 3.13
2815 3240 7.940178 AAATGTAGGACGATTTTTGGTTTTC 57.060 32.000 0.00 0.00 0.00 2.29
2862 3287 7.353414 TGCAGCTGTTAGATCTTAGTATCTT 57.647 36.000 16.64 0.00 37.41 2.40
2899 3355 3.303938 TGGGAGTGCCAAAAATCTCAAA 58.696 40.909 0.00 0.00 35.15 2.69
2929 3386 6.331369 TGGATCACATTTTTCCTCTTGTTC 57.669 37.500 0.00 0.00 0.00 3.18
2938 3395 5.657474 AGCACATGATGGATCACATTTTTC 58.343 37.500 0.00 0.00 40.72 2.29
2998 3546 9.635520 CTCTAAACGGTCTAGATAAACAGAAAA 57.364 33.333 0.00 0.00 0.00 2.29
3010 3558 4.492611 GGGAAACACTCTAAACGGTCTAG 58.507 47.826 0.00 0.00 0.00 2.43
3186 3736 0.827507 AAATGCCGGCCAAAGACTGT 60.828 50.000 26.77 0.00 0.00 3.55
3198 3748 0.811281 GGAAGTTCCTGGAAATGCCG 59.189 55.000 17.64 0.00 40.66 5.69
3243 3796 5.958380 TCAGAAGAAACTTCAGGCCTAGATA 59.042 40.000 3.98 0.00 0.00 1.98
3244 3797 4.780021 TCAGAAGAAACTTCAGGCCTAGAT 59.220 41.667 3.98 0.00 0.00 1.98
3340 3894 1.878088 CTGCCAGTGGTATCATCATGC 59.122 52.381 11.74 0.00 0.00 4.06
3349 3903 3.733883 ACTAGTAGACTGCCAGTGGTA 57.266 47.619 11.74 5.17 0.00 3.25
3366 3925 7.571071 ATCAGGTATAGGAGTGCTACTACTA 57.429 40.000 9.72 9.72 45.13 1.82
3367 3926 5.908562 TCAGGTATAGGAGTGCTACTACT 57.091 43.478 6.34 6.34 43.19 2.57
3368 3927 6.598850 GGTATCAGGTATAGGAGTGCTACTAC 59.401 46.154 0.00 0.00 0.00 2.73
3388 3947 7.605410 TTCGGTAAAAATCTTCACAGGTATC 57.395 36.000 0.00 0.00 0.00 2.24
3389 3948 7.989416 TTTCGGTAAAAATCTTCACAGGTAT 57.011 32.000 0.00 0.00 0.00 2.73
3390 3949 7.989416 ATTTCGGTAAAAATCTTCACAGGTA 57.011 32.000 0.00 0.00 0.00 3.08
3391 3950 6.894339 ATTTCGGTAAAAATCTTCACAGGT 57.106 33.333 0.00 0.00 0.00 4.00
3392 3951 9.124807 GTAAATTTCGGTAAAAATCTTCACAGG 57.875 33.333 0.00 0.00 0.00 4.00
3393 3952 9.124807 GGTAAATTTCGGTAAAAATCTTCACAG 57.875 33.333 0.00 0.00 0.00 3.66
3394 3953 8.630917 TGGTAAATTTCGGTAAAAATCTTCACA 58.369 29.630 0.00 0.00 0.00 3.58
3428 3988 2.020694 GCATGCACCCTGCTACTCAAT 61.021 52.381 14.21 0.00 45.31 2.57
3431 3991 1.078214 TGCATGCACCCTGCTACTC 60.078 57.895 18.46 0.00 45.31 2.59
3444 4004 4.380841 AGCTGTAAATTCCATGTGCATG 57.619 40.909 5.26 5.26 38.51 4.06
3496 4056 1.409064 GCCATGTCGACCACTGATAGA 59.591 52.381 14.12 0.00 0.00 1.98
3497 4057 1.410517 AGCCATGTCGACCACTGATAG 59.589 52.381 14.12 0.00 0.00 2.08
3498 4058 1.485124 AGCCATGTCGACCACTGATA 58.515 50.000 14.12 0.00 0.00 2.15
3499 4059 1.485124 TAGCCATGTCGACCACTGAT 58.515 50.000 14.12 0.00 0.00 2.90
3500 4060 1.485124 ATAGCCATGTCGACCACTGA 58.515 50.000 14.12 0.00 0.00 3.41
3501 4061 1.935873 CAATAGCCATGTCGACCACTG 59.064 52.381 14.12 7.93 0.00 3.66
3502 4062 1.555075 ACAATAGCCATGTCGACCACT 59.445 47.619 14.12 7.48 0.00 4.00
3503 4063 1.933853 GACAATAGCCATGTCGACCAC 59.066 52.381 14.12 0.00 37.98 4.16
3537 4097 3.814005 ACAGTTAGTTCAACCGTCAGT 57.186 42.857 0.00 0.00 37.93 3.41
3545 4105 4.967084 TGGGAGCTAACAGTTAGTTCAA 57.033 40.909 28.50 18.14 42.96 2.69
3546 4106 4.530553 TGATGGGAGCTAACAGTTAGTTCA 59.469 41.667 28.50 16.33 42.96 3.18
3566 4126 2.303022 ACTCCTGTTCACGGACAATGAT 59.697 45.455 0.00 0.00 0.00 2.45
3567 4127 1.691976 ACTCCTGTTCACGGACAATGA 59.308 47.619 0.00 0.00 0.00 2.57
3568 4128 1.800586 CACTCCTGTTCACGGACAATG 59.199 52.381 0.00 0.00 0.00 2.82
3569 4129 1.691976 TCACTCCTGTTCACGGACAAT 59.308 47.619 0.00 0.00 0.00 2.71
3570 4130 1.116308 TCACTCCTGTTCACGGACAA 58.884 50.000 0.00 0.00 0.00 3.18
3572 4132 0.387929 TGTCACTCCTGTTCACGGAC 59.612 55.000 0.00 0.00 0.00 4.79
3973 4535 3.344215 GCCGAGATGATGCGCCTG 61.344 66.667 4.18 0.00 0.00 4.85
3974 4536 4.957684 CGCCGAGATGATGCGCCT 62.958 66.667 4.18 0.00 41.95 5.52
4404 4987 4.156739 GGACACATCTTGGGTGATTTCTTC 59.843 45.833 0.00 0.00 31.64 2.87
4422 5005 4.574599 AGAGAAGTTGCAAAATGGACAC 57.425 40.909 0.00 0.00 0.00 3.67
4467 5050 0.179020 TGAATCATAAGCAGGCGGGG 60.179 55.000 0.00 0.00 0.00 5.73
4471 5054 3.314635 CCAGTTCTGAATCATAAGCAGGC 59.685 47.826 1.00 0.00 0.00 4.85
4490 5074 6.034591 ACAAAATAGAATCGTCGTAGTCCAG 58.965 40.000 0.00 0.00 0.00 3.86
4541 5129 2.187599 CTACCAAGCCAAGTGCACGC 62.188 60.000 12.01 9.26 44.83 5.34
4576 5164 9.099454 CAGTTAAATAAATCCTCCTGTGTACTC 57.901 37.037 0.00 0.00 0.00 2.59
4639 5227 6.476380 AGCCGCACATGATTTAAATAACAATG 59.524 34.615 0.00 6.01 0.00 2.82
4640 5228 6.476380 CAGCCGCACATGATTTAAATAACAAT 59.524 34.615 0.00 0.00 0.00 2.71
4649 5238 0.394216 AGGCAGCCGCACATGATTTA 60.394 50.000 5.55 0.00 41.24 1.40
4650 5239 1.679977 AGGCAGCCGCACATGATTT 60.680 52.632 5.55 0.00 41.24 2.17
4656 5245 3.286751 GAAACAGGCAGCCGCACA 61.287 61.111 5.55 0.00 41.24 4.57
4662 5251 1.242076 ACATGTGAGAAACAGGCAGC 58.758 50.000 0.00 0.00 44.51 5.25
4716 5305 4.472833 GCCCATGATCCTGGATAATCTAGT 59.527 45.833 17.83 0.00 38.69 2.57
4717 5306 4.141528 GGCCCATGATCCTGGATAATCTAG 60.142 50.000 17.83 0.04 38.69 2.43
4733 5322 0.825010 GGCTATGGAAGTGGCCCATG 60.825 60.000 0.00 0.00 43.72 3.66
4777 5366 9.979578 AGAGTGTATAGCTATCTGAATTTTGAG 57.020 33.333 10.16 0.00 0.00 3.02
4794 5383 7.630728 GCACAGTTCCACAAGATAGAGTGTATA 60.631 40.741 0.00 0.00 33.99 1.47
4795 5384 6.634805 CACAGTTCCACAAGATAGAGTGTAT 58.365 40.000 0.00 0.00 33.99 2.29
4796 5385 5.566826 GCACAGTTCCACAAGATAGAGTGTA 60.567 44.000 0.00 0.00 33.99 2.90
4862 5451 4.561938 CCATTTGCCACATCTTCAACATGT 60.562 41.667 0.00 0.00 34.67 3.21
4877 5466 2.435372 TATGTGGACTCCCATTTGCC 57.565 50.000 4.84 0.00 45.68 4.52
4880 5469 4.855340 ACGAATTATGTGGACTCCCATTT 58.145 39.130 0.00 0.00 45.68 2.32
4905 5494 3.244700 ACTCTCCCTTGAACATGGACTTG 60.245 47.826 8.07 0.00 0.00 3.16
4908 5497 2.303022 TCACTCTCCCTTGAACATGGAC 59.697 50.000 8.07 0.00 0.00 4.02
4918 5507 3.652869 TCCTCAAACAATCACTCTCCCTT 59.347 43.478 0.00 0.00 0.00 3.95
4947 5536 6.182507 TGGTTACCTGTAATCATGATACCC 57.817 41.667 9.04 0.51 31.75 3.69
4952 5541 5.943416 CCTGTTTGGTTACCTGTAATCATGA 59.057 40.000 2.07 0.00 36.21 3.07
4956 5545 3.442625 GGCCTGTTTGGTTACCTGTAATC 59.557 47.826 2.07 0.00 38.35 1.75
4957 5546 3.181427 TGGCCTGTTTGGTTACCTGTAAT 60.181 43.478 3.32 0.00 38.35 1.89
4959 5548 1.775459 TGGCCTGTTTGGTTACCTGTA 59.225 47.619 3.32 0.00 38.35 2.74
4975 5564 1.404035 CAACCGGTATTAGCTTTGGCC 59.596 52.381 8.00 0.00 39.73 5.36
4986 5575 6.350629 ACTACAACTTTACTCAACCGGTAT 57.649 37.500 8.00 0.00 0.00 2.73
4988 5577 4.677673 ACTACAACTTTACTCAACCGGT 57.322 40.909 0.00 0.00 0.00 5.28
4993 5582 8.347035 GCATGGTAAAACTACAACTTTACTCAA 58.653 33.333 0.00 0.00 37.87 3.02
4995 5584 7.303261 GGCATGGTAAAACTACAACTTTACTC 58.697 38.462 0.00 0.00 37.87 2.59
4997 5586 6.081693 CGGCATGGTAAAACTACAACTTTAC 58.918 40.000 0.00 0.00 37.31 2.01
5003 5592 2.505405 TGCGGCATGGTAAAACTACAA 58.495 42.857 0.00 0.00 0.00 2.41
5026 5615 8.870879 AGTTTTTGAACTGATAACTAGTATCGC 58.129 33.333 0.00 0.00 41.51 4.58
5062 5651 9.273016 GCAATAAGCTTACACCAATAAGATCTA 57.727 33.333 8.70 0.00 41.15 1.98
5089 5685 6.233905 AGCAACACCCTTAGAACAATTTTT 57.766 33.333 0.00 0.00 0.00 1.94
5090 5686 5.869649 AGCAACACCCTTAGAACAATTTT 57.130 34.783 0.00 0.00 0.00 1.82
5099 5695 5.940470 ACTTGAGATTTAGCAACACCCTTAG 59.060 40.000 0.00 0.00 0.00 2.18
5109 5705 3.582647 TGACTGGGACTTGAGATTTAGCA 59.417 43.478 0.00 0.00 0.00 3.49
5125 5721 6.738114 ACAACATATTTTGTCACTTGACTGG 58.262 36.000 10.63 0.00 44.99 4.00
5127 5723 8.677148 ACTACAACATATTTTGTCACTTGACT 57.323 30.769 10.44 0.00 44.99 3.41
5181 5777 8.875803 CGCTGGTTTAGTACAATTCTGTATAAA 58.124 33.333 0.00 0.00 40.16 1.40
5182 5778 8.252417 TCGCTGGTTTAGTACAATTCTGTATAA 58.748 33.333 0.00 0.00 40.16 0.98
5183 5779 7.774134 TCGCTGGTTTAGTACAATTCTGTATA 58.226 34.615 0.00 0.00 40.16 1.47
5184 5780 6.636705 TCGCTGGTTTAGTACAATTCTGTAT 58.363 36.000 0.00 0.00 40.16 2.29
5185 5781 6.028146 TCGCTGGTTTAGTACAATTCTGTA 57.972 37.500 0.00 0.00 36.96 2.74
5186 5782 4.890088 TCGCTGGTTTAGTACAATTCTGT 58.110 39.130 0.00 0.00 39.75 3.41
5187 5783 7.534085 TTATCGCTGGTTTAGTACAATTCTG 57.466 36.000 0.00 0.00 0.00 3.02
5188 5784 8.732746 AATTATCGCTGGTTTAGTACAATTCT 57.267 30.769 0.00 0.00 0.00 2.40
5196 5792 9.216117 GTCCATATTAATTATCGCTGGTTTAGT 57.784 33.333 0.00 0.00 0.00 2.24
5197 5793 8.665685 GGTCCATATTAATTATCGCTGGTTTAG 58.334 37.037 0.00 0.00 0.00 1.85
5198 5794 7.332430 CGGTCCATATTAATTATCGCTGGTTTA 59.668 37.037 0.00 0.00 0.00 2.01
5199 5795 6.148811 CGGTCCATATTAATTATCGCTGGTTT 59.851 38.462 0.00 0.00 0.00 3.27
5200 5796 5.642063 CGGTCCATATTAATTATCGCTGGTT 59.358 40.000 0.00 0.00 0.00 3.67
5201 5797 5.046878 TCGGTCCATATTAATTATCGCTGGT 60.047 40.000 0.00 0.00 0.00 4.00
5202 5798 5.416083 TCGGTCCATATTAATTATCGCTGG 58.584 41.667 0.00 0.00 0.00 4.85
5203 5799 6.811665 TCTTCGGTCCATATTAATTATCGCTG 59.188 38.462 0.00 0.00 0.00 5.18
5204 5800 6.931838 TCTTCGGTCCATATTAATTATCGCT 58.068 36.000 0.00 0.00 0.00 4.93
5205 5801 7.033791 TCTCTTCGGTCCATATTAATTATCGC 58.966 38.462 0.00 0.00 0.00 4.58
5206 5802 7.221067 GCTCTCTTCGGTCCATATTAATTATCG 59.779 40.741 0.00 0.00 0.00 2.92
5207 5803 8.035394 TGCTCTCTTCGGTCCATATTAATTATC 58.965 37.037 0.00 0.00 0.00 1.75
5208 5804 7.907389 TGCTCTCTTCGGTCCATATTAATTAT 58.093 34.615 0.00 0.00 0.00 1.28
5209 5805 7.297936 TGCTCTCTTCGGTCCATATTAATTA 57.702 36.000 0.00 0.00 0.00 1.40
5210 5806 6.174720 TGCTCTCTTCGGTCCATATTAATT 57.825 37.500 0.00 0.00 0.00 1.40
5211 5807 5.808366 TGCTCTCTTCGGTCCATATTAAT 57.192 39.130 0.00 0.00 0.00 1.40
5212 5808 5.607939 TTGCTCTCTTCGGTCCATATTAA 57.392 39.130 0.00 0.00 0.00 1.40
5213 5809 5.607939 TTTGCTCTCTTCGGTCCATATTA 57.392 39.130 0.00 0.00 0.00 0.98
5214 5810 4.487714 TTTGCTCTCTTCGGTCCATATT 57.512 40.909 0.00 0.00 0.00 1.28
5215 5811 4.487714 TTTTGCTCTCTTCGGTCCATAT 57.512 40.909 0.00 0.00 0.00 1.78
5216 5812 3.973206 TTTTGCTCTCTTCGGTCCATA 57.027 42.857 0.00 0.00 0.00 2.74
5217 5813 2.859165 TTTTGCTCTCTTCGGTCCAT 57.141 45.000 0.00 0.00 0.00 3.41
5218 5814 2.859165 ATTTTGCTCTCTTCGGTCCA 57.141 45.000 0.00 0.00 0.00 4.02
5219 5815 4.505313 AAAATTTTGCTCTCTTCGGTCC 57.495 40.909 1.75 0.00 0.00 4.46
5220 5816 5.411669 TCCTAAAATTTTGCTCTCTTCGGTC 59.588 40.000 13.76 0.00 0.00 4.79
5221 5817 5.313712 TCCTAAAATTTTGCTCTCTTCGGT 58.686 37.500 13.76 0.00 0.00 4.69
5222 5818 5.163713 CCTCCTAAAATTTTGCTCTCTTCGG 60.164 44.000 13.76 1.05 0.00 4.30
5223 5819 5.643777 TCCTCCTAAAATTTTGCTCTCTTCG 59.356 40.000 13.76 0.00 0.00 3.79
5224 5820 7.309177 GTTCCTCCTAAAATTTTGCTCTCTTC 58.691 38.462 13.76 0.00 0.00 2.87
5225 5821 6.209589 GGTTCCTCCTAAAATTTTGCTCTCTT 59.790 38.462 13.76 0.00 0.00 2.85
5226 5822 5.712446 GGTTCCTCCTAAAATTTTGCTCTCT 59.288 40.000 13.76 0.00 0.00 3.10
5227 5823 5.105716 GGGTTCCTCCTAAAATTTTGCTCTC 60.106 44.000 13.76 0.00 36.25 3.20
5228 5824 4.772624 GGGTTCCTCCTAAAATTTTGCTCT 59.227 41.667 13.76 0.00 36.25 4.09
5229 5825 4.772624 AGGGTTCCTCCTAAAATTTTGCTC 59.227 41.667 13.76 0.00 34.92 4.26
5230 5826 4.752063 AGGGTTCCTCCTAAAATTTTGCT 58.248 39.130 13.76 0.00 34.92 3.91
5231 5827 6.791867 ATAGGGTTCCTCCTAAAATTTTGC 57.208 37.500 13.76 0.00 42.12 3.68
5238 5834 8.215736 GCTACAATTTATAGGGTTCCTCCTAAA 58.784 37.037 0.00 0.00 42.12 1.85
5239 5835 7.202158 GGCTACAATTTATAGGGTTCCTCCTAA 60.202 40.741 0.00 0.00 42.12 2.69
5240 5836 6.271624 GGCTACAATTTATAGGGTTCCTCCTA 59.728 42.308 0.00 0.00 42.91 2.94
5241 5837 5.073280 GGCTACAATTTATAGGGTTCCTCCT 59.927 44.000 0.00 0.00 40.79 3.69
5242 5838 5.163131 TGGCTACAATTTATAGGGTTCCTCC 60.163 44.000 0.00 0.00 34.61 4.30
5243 5839 5.937111 TGGCTACAATTTATAGGGTTCCTC 58.063 41.667 0.00 0.00 34.61 3.71
5244 5840 5.432060 ACTGGCTACAATTTATAGGGTTCCT 59.568 40.000 0.00 0.00 37.71 3.36
5245 5841 5.691896 ACTGGCTACAATTTATAGGGTTCC 58.308 41.667 0.00 0.00 0.00 3.62
5246 5842 8.618677 GTTAACTGGCTACAATTTATAGGGTTC 58.381 37.037 0.00 0.00 0.00 3.62
5247 5843 8.333984 AGTTAACTGGCTACAATTTATAGGGTT 58.666 33.333 7.48 0.00 0.00 4.11
5248 5844 7.868974 AGTTAACTGGCTACAATTTATAGGGT 58.131 34.615 7.48 0.00 0.00 4.34
5249 5845 7.990886 TGAGTTAACTGGCTACAATTTATAGGG 59.009 37.037 14.14 0.00 0.00 3.53
5250 5846 8.958119 TGAGTTAACTGGCTACAATTTATAGG 57.042 34.615 14.14 0.00 0.00 2.57
5251 5847 9.817809 TCTGAGTTAACTGGCTACAATTTATAG 57.182 33.333 14.14 0.00 0.00 1.31
5253 5849 9.167311 CTTCTGAGTTAACTGGCTACAATTTAT 57.833 33.333 14.14 0.00 0.00 1.40
5254 5850 8.154856 ACTTCTGAGTTAACTGGCTACAATTTA 58.845 33.333 14.14 0.00 29.87 1.40
5255 5851 6.998673 ACTTCTGAGTTAACTGGCTACAATTT 59.001 34.615 14.14 0.00 29.87 1.82
5256 5852 6.428159 CACTTCTGAGTTAACTGGCTACAATT 59.572 38.462 14.14 0.00 32.54 2.32
5257 5853 5.934625 CACTTCTGAGTTAACTGGCTACAAT 59.065 40.000 14.14 0.00 32.54 2.71
5258 5854 5.297547 CACTTCTGAGTTAACTGGCTACAA 58.702 41.667 14.14 0.00 32.54 2.41
5259 5855 4.799586 GCACTTCTGAGTTAACTGGCTACA 60.800 45.833 14.14 3.24 32.54 2.74
5260 5856 3.680458 GCACTTCTGAGTTAACTGGCTAC 59.320 47.826 14.14 0.00 32.54 3.58
5261 5857 3.578716 AGCACTTCTGAGTTAACTGGCTA 59.421 43.478 14.14 0.00 32.54 3.93
5262 5858 2.370189 AGCACTTCTGAGTTAACTGGCT 59.630 45.455 14.14 7.26 32.54 4.75
5263 5859 2.772287 AGCACTTCTGAGTTAACTGGC 58.228 47.619 14.14 0.00 32.54 4.85
5264 5860 4.380531 TGAAGCACTTCTGAGTTAACTGG 58.619 43.478 14.14 5.86 40.14 4.00
5265 5861 5.277538 GGTTGAAGCACTTCTGAGTTAACTG 60.278 44.000 14.14 0.00 40.14 3.16
5266 5862 4.816925 GGTTGAAGCACTTCTGAGTTAACT 59.183 41.667 8.13 8.13 40.14 2.24
5267 5863 4.574828 TGGTTGAAGCACTTCTGAGTTAAC 59.425 41.667 11.44 0.00 40.14 2.01
5268 5864 4.776349 TGGTTGAAGCACTTCTGAGTTAA 58.224 39.130 11.44 0.00 40.14 2.01
5269 5865 4.415881 TGGTTGAAGCACTTCTGAGTTA 57.584 40.909 11.44 0.00 40.14 2.24
5270 5866 3.281727 TGGTTGAAGCACTTCTGAGTT 57.718 42.857 11.44 0.00 40.14 3.01
5271 5867 3.281727 TTGGTTGAAGCACTTCTGAGT 57.718 42.857 11.44 0.00 40.14 3.41
5272 5868 3.567164 ACATTGGTTGAAGCACTTCTGAG 59.433 43.478 11.44 0.00 40.14 3.35
5273 5869 3.316029 CACATTGGTTGAAGCACTTCTGA 59.684 43.478 11.44 0.00 40.14 3.27
5274 5870 3.551454 CCACATTGGTTGAAGCACTTCTG 60.551 47.826 11.44 3.31 35.22 3.02
5275 5871 2.624838 CCACATTGGTTGAAGCACTTCT 59.375 45.455 11.44 0.00 35.22 2.85
5276 5872 3.017265 CCACATTGGTTGAAGCACTTC 57.983 47.619 0.00 3.37 34.96 3.01
5288 5884 2.353011 GCATCAAACTCCACCACATTGG 60.353 50.000 0.00 0.00 45.02 3.16
5289 5885 2.353011 GGCATCAAACTCCACCACATTG 60.353 50.000 0.00 0.00 0.00 2.82
5290 5886 1.895131 GGCATCAAACTCCACCACATT 59.105 47.619 0.00 0.00 0.00 2.71
5291 5887 1.549203 GGCATCAAACTCCACCACAT 58.451 50.000 0.00 0.00 0.00 3.21
5292 5888 0.888736 CGGCATCAAACTCCACCACA 60.889 55.000 0.00 0.00 0.00 4.17
5293 5889 1.875963 CGGCATCAAACTCCACCAC 59.124 57.895 0.00 0.00 0.00 4.16
5294 5890 4.395519 CGGCATCAAACTCCACCA 57.604 55.556 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.