Multiple sequence alignment - TraesCS3D01G425600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G425600 chr3D 100.000 3424 0 0 1 3424 537942342 537938919 0.000000e+00 6324.0
1 TraesCS3D01G425600 chr3D 93.197 294 19 1 2970 3262 44293634 44293341 6.790000e-117 431.0
2 TraesCS3D01G425600 chr3A 88.437 2335 125 53 683 2970 673477995 673475759 0.000000e+00 2682.0
3 TraesCS3D01G425600 chr3A 94.077 287 16 1 2970 3255 559703318 559703032 5.250000e-118 435.0
4 TraesCS3D01G425600 chr3A 78.840 586 52 42 91 641 673478555 673478007 2.550000e-86 329.0
5 TraesCS3D01G425600 chr3A 79.213 178 21 8 3254 3424 673475762 673475594 3.610000e-20 110.0
6 TraesCS3D01G425600 chr3B 89.847 2029 67 57 682 2641 712755285 712753327 0.000000e+00 2477.0
7 TraesCS3D01G425600 chr3B 80.702 570 54 28 1 544 712756004 712755465 3.200000e-105 392.0
8 TraesCS3D01G425600 chr3B 90.800 250 13 6 2725 2970 712750475 712750232 3.300000e-85 326.0
9 TraesCS3D01G425600 chr3B 81.871 171 17 11 3254 3424 712750235 712750079 7.710000e-27 132.0
10 TraesCS3D01G425600 chr3B 97.143 35 1 0 613 647 712755337 712755303 3.690000e-05 60.2
11 TraesCS3D01G425600 chr1D 92.763 304 21 1 2960 3262 268331134 268331437 4.060000e-119 438.0
12 TraesCS3D01G425600 chr1D 93.197 294 19 1 2970 3262 71701421 71701714 6.790000e-117 431.0
13 TraesCS3D01G425600 chr1D 92.929 297 19 2 2961 3255 142341728 142341432 6.790000e-117 431.0
14 TraesCS3D01G425600 chr6D 93.197 294 19 1 2970 3262 137724285 137724578 6.790000e-117 431.0
15 TraesCS3D01G425600 chr6D 93.197 294 19 1 2970 3262 348814991 348814698 6.790000e-117 431.0
16 TraesCS3D01G425600 chr4D 93.197 294 19 1 2970 3262 125173881 125174174 6.790000e-117 431.0
17 TraesCS3D01G425600 chr4D 93.197 294 19 1 2970 3262 127482101 127482394 6.790000e-117 431.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G425600 chr3D 537938919 537942342 3423 True 6324.000000 6324 100.000000 1 3424 1 chr3D.!!$R2 3423
1 TraesCS3D01G425600 chr3A 673475594 673478555 2961 True 1040.333333 2682 82.163333 91 3424 3 chr3A.!!$R2 3333
2 TraesCS3D01G425600 chr3B 712750079 712756004 5925 True 677.440000 2477 88.072600 1 3424 5 chr3B.!!$R1 3423

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
944 1058 0.45541 CTGAGCTAGCTCTCGTGCTT 59.545 55.0 37.42 6.66 43.74 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2627 2827 0.179127 CCCGATCGATCCATCCATCG 60.179 60.0 18.66 8.98 44.07 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.068307 CCGATCAGATTACCGTTTCTCCT 59.932 47.826 0.00 0.00 0.00 3.69
30 31 4.277672 CCGATCAGATTACCGTTTCTCCTA 59.722 45.833 0.00 0.00 0.00 2.94
75 76 1.801025 GCCCCAACGTGTTTGAACTTG 60.801 52.381 0.00 0.00 37.39 3.16
78 79 3.175929 CCCAACGTGTTTGAACTTGTTC 58.824 45.455 6.56 6.56 37.39 3.18
79 80 2.843643 CCAACGTGTTTGAACTTGTTCG 59.156 45.455 8.68 0.00 37.39 3.95
80 81 3.425094 CCAACGTGTTTGAACTTGTTCGA 60.425 43.478 8.68 4.41 37.39 3.71
81 82 3.378959 ACGTGTTTGAACTTGTTCGAC 57.621 42.857 8.68 9.84 0.00 4.20
82 83 2.222640 ACGTGTTTGAACTTGTTCGACG 60.223 45.455 17.35 17.35 0.00 5.12
105 106 1.865788 CGTGGCCAGGTCAACATTGG 61.866 60.000 17.47 0.07 35.06 3.16
127 128 1.346722 ACACGCAAAACTAGCCTAGGT 59.653 47.619 11.31 0.00 0.00 3.08
129 130 1.278238 CGCAAAACTAGCCTAGGTCG 58.722 55.000 11.31 1.55 0.00 4.79
138 140 2.724273 GCCTAGGTCGGGCGGTTAA 61.724 63.158 11.31 0.00 40.19 2.01
144 146 2.387757 AGGTCGGGCGGTTAAGTAATA 58.612 47.619 0.00 0.00 0.00 0.98
145 147 2.765699 AGGTCGGGCGGTTAAGTAATAA 59.234 45.455 0.00 0.00 0.00 1.40
147 149 3.430790 GGTCGGGCGGTTAAGTAATAAGT 60.431 47.826 0.00 0.00 0.00 2.24
148 150 4.183865 GTCGGGCGGTTAAGTAATAAGTT 58.816 43.478 0.00 0.00 0.00 2.66
149 151 5.348164 GTCGGGCGGTTAAGTAATAAGTTA 58.652 41.667 0.00 0.00 0.00 2.24
151 153 6.479990 GTCGGGCGGTTAAGTAATAAGTTATT 59.520 38.462 12.61 12.61 0.00 1.40
152 154 6.701400 TCGGGCGGTTAAGTAATAAGTTATTC 59.299 38.462 11.41 4.58 0.00 1.75
153 155 6.703165 CGGGCGGTTAAGTAATAAGTTATTCT 59.297 38.462 11.41 6.58 0.00 2.40
154 156 7.867403 CGGGCGGTTAAGTAATAAGTTATTCTA 59.133 37.037 11.41 0.68 0.00 2.10
155 157 9.201127 GGGCGGTTAAGTAATAAGTTATTCTAG 57.799 37.037 11.41 0.00 0.00 2.43
156 158 9.755804 GGCGGTTAAGTAATAAGTTATTCTAGT 57.244 33.333 11.41 0.00 0.00 2.57
233 236 0.878523 TTCGTCACCAAGCCAACTCG 60.879 55.000 0.00 0.00 0.00 4.18
236 239 1.021968 GTCACCAAGCCAACTCGTTT 58.978 50.000 0.00 0.00 0.00 3.60
237 240 1.021202 TCACCAAGCCAACTCGTTTG 58.979 50.000 0.00 0.00 34.63 2.93
254 257 2.102553 GCCAGCGTACTCCTCGAC 59.897 66.667 0.00 0.00 0.00 4.20
277 296 7.691463 CGACAGAGACATCATTCTTGAATTTTC 59.309 37.037 0.00 0.00 34.96 2.29
278 297 8.400184 ACAGAGACATCATTCTTGAATTTTCA 57.600 30.769 0.00 0.00 34.96 2.69
279 298 8.295288 ACAGAGACATCATTCTTGAATTTTCAC 58.705 33.333 0.00 0.00 36.83 3.18
292 314 7.497579 TCTTGAATTTTCACTAGTAGTGTGCAA 59.502 33.333 25.83 17.37 46.03 4.08
408 453 1.203313 GTGGCGCACGTTAACTGAC 59.797 57.895 10.83 0.00 0.00 3.51
489 534 1.597663 CTTCATCACGGCCCGATTAAC 59.402 52.381 11.71 0.00 0.00 2.01
491 536 1.202486 TCATCACGGCCCGATTAACTC 60.202 52.381 11.71 0.00 0.00 3.01
513 558 3.396502 CGGCGCAACGTACGTGAA 61.397 61.111 23.57 0.00 0.00 3.18
514 559 2.169327 GGCGCAACGTACGTGAAC 59.831 61.111 23.57 13.20 0.00 3.18
641 746 1.409412 CAGGCTCGATCGGTAATTCG 58.591 55.000 16.41 0.00 36.72 3.34
652 757 2.509786 TAATTCGCGGCGGGTGAC 60.510 61.111 23.46 0.00 34.19 3.67
661 766 3.998672 GCGGGTGACGTGGAAGGA 61.999 66.667 0.00 0.00 46.52 3.36
662 767 2.261671 CGGGTGACGTGGAAGGAG 59.738 66.667 0.00 0.00 37.93 3.69
663 768 2.273179 CGGGTGACGTGGAAGGAGA 61.273 63.158 0.00 0.00 37.93 3.71
665 770 1.079750 GGTGACGTGGAAGGAGAGC 60.080 63.158 0.00 0.00 0.00 4.09
666 771 1.079750 GTGACGTGGAAGGAGAGCC 60.080 63.158 0.00 0.00 0.00 4.70
668 773 3.358076 GACGTGGAAGGAGAGCCGG 62.358 68.421 0.00 0.00 39.96 6.13
669 774 4.148825 CGTGGAAGGAGAGCCGGG 62.149 72.222 2.18 0.00 39.96 5.73
670 775 3.787001 GTGGAAGGAGAGCCGGGG 61.787 72.222 2.18 0.00 39.96 5.73
847 954 0.535335 CCTTTCTCGTTCGATCCCCA 59.465 55.000 0.00 0.00 0.00 4.96
848 955 1.139058 CCTTTCTCGTTCGATCCCCAT 59.861 52.381 0.00 0.00 0.00 4.00
849 956 2.474816 CTTTCTCGTTCGATCCCCATC 58.525 52.381 0.00 0.00 0.00 3.51
850 957 0.750850 TTCTCGTTCGATCCCCATCC 59.249 55.000 0.00 0.00 0.00 3.51
851 958 1.113517 TCTCGTTCGATCCCCATCCC 61.114 60.000 0.00 0.00 0.00 3.85
852 959 2.100879 CTCGTTCGATCCCCATCCCC 62.101 65.000 0.00 0.00 0.00 4.81
944 1058 0.455410 CTGAGCTAGCTCTCGTGCTT 59.545 55.000 37.42 6.66 43.74 3.91
1011 1137 2.202440 CGAGCGATGGACGTCGTT 60.202 61.111 9.92 9.20 43.27 3.85
1014 1140 0.179181 GAGCGATGGACGTCGTTGTA 60.179 55.000 9.92 0.00 43.27 2.41
1038 1164 4.493747 CCGTCTTCTCCGCCCGAC 62.494 72.222 0.00 0.00 0.00 4.79
1157 1283 2.405594 CGACGAGCTCTTCTCCGG 59.594 66.667 17.19 0.00 38.62 5.14
1224 1350 2.029964 GACGCCGACCAAGACCAA 59.970 61.111 0.00 0.00 0.00 3.67
1226 1352 2.342279 CGCCGACCAAGACCAAGA 59.658 61.111 0.00 0.00 0.00 3.02
1229 1355 2.027625 CCGACCAAGACCAAGACGC 61.028 63.158 0.00 0.00 0.00 5.19
1230 1356 2.027625 CGACCAAGACCAAGACGCC 61.028 63.158 0.00 0.00 0.00 5.68
1233 1362 2.742372 CAAGACCAAGACGCCGGG 60.742 66.667 2.18 0.00 0.00 5.73
1236 1365 4.011517 GACCAAGACGCCGGGGAA 62.012 66.667 27.23 0.00 0.00 3.97
1275 1407 3.164011 GCCGACGACGTCAACGAG 61.164 66.667 26.26 18.07 43.02 4.18
1279 1411 1.791283 GACGACGTCAACGAGTCCG 60.791 63.158 22.66 9.14 43.02 4.79
1281 1413 2.804090 GACGTCAACGAGTCCGCC 60.804 66.667 11.55 0.00 43.02 6.13
1920 2055 3.319926 GAAGCAGAGCAGCAACGCC 62.320 63.158 0.00 0.00 36.85 5.68
1921 2056 4.631247 AGCAGAGCAGCAACGCCA 62.631 61.111 0.00 0.00 36.85 5.69
1922 2057 4.395583 GCAGAGCAGCAACGCCAC 62.396 66.667 0.00 0.00 0.00 5.01
1923 2058 3.730761 CAGAGCAGCAACGCCACC 61.731 66.667 0.00 0.00 0.00 4.61
1962 2097 3.562232 AAGGCCGTCCCCGAACAA 61.562 61.111 0.00 0.00 35.63 2.83
2258 2410 0.175073 TCGTCTCTCTCGTCGATCCA 59.825 55.000 0.00 0.00 0.00 3.41
2263 2415 0.945099 TCTCTCGTCGATCCATTCCG 59.055 55.000 0.00 0.00 0.00 4.30
2416 2579 2.693591 TGTCCATGTACCACTAGCTAGC 59.306 50.000 20.91 6.62 0.00 3.42
2417 2580 2.693591 GTCCATGTACCACTAGCTAGCA 59.306 50.000 20.91 10.34 0.00 3.49
2446 2610 4.792702 AGTAAAACCGTAACACGCAAAAAC 59.207 37.500 0.00 0.00 40.91 2.43
2541 2737 3.294214 AGTGGGAGATGCCAAATGATTC 58.706 45.455 0.00 0.00 38.95 2.52
2639 2846 1.134965 GGATCGACCGATGGATGGATC 60.135 57.143 9.83 0.00 34.60 3.36
2861 5904 2.100631 CGCCGTGCTTGTTCTAGGG 61.101 63.158 0.00 0.00 0.00 3.53
2870 5913 3.865830 GTTCTAGGGCGCGCTTGC 61.866 66.667 32.72 14.71 0.00 4.01
2872 5915 4.514577 TCTAGGGCGCGCTTGCTC 62.515 66.667 32.72 13.86 36.08 4.26
2919 5962 4.526348 TCCGGGCCATGCATGCAT 62.526 61.111 27.46 27.46 37.08 3.96
2966 6009 4.142773 CCATGATGGCAAGAAACAATTTGC 60.143 41.667 0.00 0.81 46.76 3.68
2967 6010 4.339872 TGATGGCAAGAAACAATTTGCT 57.660 36.364 8.82 0.00 46.69 3.91
2968 6011 4.309099 TGATGGCAAGAAACAATTTGCTC 58.691 39.130 8.82 1.43 46.69 4.26
2969 6012 3.815856 TGGCAAGAAACAATTTGCTCA 57.184 38.095 8.82 3.51 46.69 4.26
2970 6013 3.719924 TGGCAAGAAACAATTTGCTCAG 58.280 40.909 8.82 0.00 46.69 3.35
2971 6014 3.384146 TGGCAAGAAACAATTTGCTCAGA 59.616 39.130 8.82 0.00 46.69 3.27
2972 6015 3.985925 GGCAAGAAACAATTTGCTCAGAG 59.014 43.478 8.82 0.00 46.69 3.35
2973 6016 3.427863 GCAAGAAACAATTTGCTCAGAGC 59.572 43.478 16.21 16.21 44.70 4.09
2990 6033 6.533367 GCTCAGAGCATGGTTAATAGTATAGC 59.467 42.308 18.17 0.00 41.89 2.97
2991 6034 7.578571 GCTCAGAGCATGGTTAATAGTATAGCT 60.579 40.741 18.17 0.00 41.89 3.32
2992 6035 8.879427 TCAGAGCATGGTTAATAGTATAGCTA 57.121 34.615 0.00 0.00 0.00 3.32
2993 6036 8.961634 TCAGAGCATGGTTAATAGTATAGCTAG 58.038 37.037 0.00 0.00 32.45 3.42
2994 6037 7.704472 CAGAGCATGGTTAATAGTATAGCTAGC 59.296 40.741 6.62 6.62 32.45 3.42
2995 6038 7.617723 AGAGCATGGTTAATAGTATAGCTAGCT 59.382 37.037 23.12 23.12 32.45 3.32
2996 6039 7.551585 AGCATGGTTAATAGTATAGCTAGCTG 58.448 38.462 27.68 6.30 32.45 4.24
2997 6040 6.256757 GCATGGTTAATAGTATAGCTAGCTGC 59.743 42.308 27.68 16.27 43.29 5.25
3019 6062 1.972872 GCTATAAGCCAGTGCCATGT 58.027 50.000 0.00 0.00 38.69 3.21
3020 6063 1.876156 GCTATAAGCCAGTGCCATGTC 59.124 52.381 0.00 0.00 38.69 3.06
3021 6064 2.746142 GCTATAAGCCAGTGCCATGTCA 60.746 50.000 0.00 0.00 38.69 3.58
3022 6065 2.742428 ATAAGCCAGTGCCATGTCAT 57.258 45.000 0.00 0.00 38.69 3.06
3023 6066 2.042686 TAAGCCAGTGCCATGTCATC 57.957 50.000 0.00 0.00 38.69 2.92
3024 6067 0.330604 AAGCCAGTGCCATGTCATCT 59.669 50.000 0.00 0.00 38.69 2.90
3025 6068 1.206878 AGCCAGTGCCATGTCATCTA 58.793 50.000 0.00 0.00 38.69 1.98
3026 6069 1.134280 AGCCAGTGCCATGTCATCTAC 60.134 52.381 0.00 0.00 38.69 2.59
3027 6070 1.407299 GCCAGTGCCATGTCATCTACA 60.407 52.381 0.00 0.00 43.86 2.74
3028 6071 2.558378 CCAGTGCCATGTCATCTACAG 58.442 52.381 0.00 0.00 42.70 2.74
3029 6072 2.093288 CCAGTGCCATGTCATCTACAGT 60.093 50.000 0.00 0.00 42.70 3.55
3030 6073 3.193263 CAGTGCCATGTCATCTACAGTC 58.807 50.000 0.00 0.00 42.70 3.51
3031 6074 2.169352 AGTGCCATGTCATCTACAGTCC 59.831 50.000 0.00 0.00 42.70 3.85
3032 6075 2.093500 GTGCCATGTCATCTACAGTCCA 60.093 50.000 0.00 0.00 42.70 4.02
3033 6076 2.773661 TGCCATGTCATCTACAGTCCAT 59.226 45.455 0.00 0.00 42.70 3.41
3034 6077 3.200605 TGCCATGTCATCTACAGTCCATT 59.799 43.478 0.00 0.00 42.70 3.16
3035 6078 4.202441 GCCATGTCATCTACAGTCCATTT 58.798 43.478 0.00 0.00 42.70 2.32
3036 6079 4.641989 GCCATGTCATCTACAGTCCATTTT 59.358 41.667 0.00 0.00 42.70 1.82
3037 6080 5.822519 GCCATGTCATCTACAGTCCATTTTA 59.177 40.000 0.00 0.00 42.70 1.52
3038 6081 6.488006 GCCATGTCATCTACAGTCCATTTTAT 59.512 38.462 0.00 0.00 42.70 1.40
3039 6082 7.661437 GCCATGTCATCTACAGTCCATTTTATA 59.339 37.037 0.00 0.00 42.70 0.98
3040 6083 9.212641 CCATGTCATCTACAGTCCATTTTATAG 57.787 37.037 0.00 0.00 42.70 1.31
3041 6084 8.715998 CATGTCATCTACAGTCCATTTTATAGC 58.284 37.037 0.00 0.00 42.70 2.97
3042 6085 7.217200 TGTCATCTACAGTCCATTTTATAGCC 58.783 38.462 0.00 0.00 33.01 3.93
3043 6086 7.147567 TGTCATCTACAGTCCATTTTATAGCCA 60.148 37.037 0.00 0.00 33.01 4.75
3044 6087 7.715249 GTCATCTACAGTCCATTTTATAGCCAA 59.285 37.037 0.00 0.00 0.00 4.52
3045 6088 7.715249 TCATCTACAGTCCATTTTATAGCCAAC 59.285 37.037 0.00 0.00 0.00 3.77
3046 6089 6.953101 TCTACAGTCCATTTTATAGCCAACA 58.047 36.000 0.00 0.00 0.00 3.33
3047 6090 7.573710 TCTACAGTCCATTTTATAGCCAACAT 58.426 34.615 0.00 0.00 0.00 2.71
3048 6091 6.455360 ACAGTCCATTTTATAGCCAACATG 57.545 37.500 0.00 0.00 0.00 3.21
3049 6092 5.951747 ACAGTCCATTTTATAGCCAACATGT 59.048 36.000 0.00 0.00 0.00 3.21
3050 6093 7.116075 ACAGTCCATTTTATAGCCAACATGTA 58.884 34.615 0.00 0.00 0.00 2.29
3051 6094 7.779798 ACAGTCCATTTTATAGCCAACATGTAT 59.220 33.333 0.00 0.00 0.00 2.29
3052 6095 9.283768 CAGTCCATTTTATAGCCAACATGTATA 57.716 33.333 0.00 0.00 0.00 1.47
3053 6096 9.860650 AGTCCATTTTATAGCCAACATGTATAA 57.139 29.630 0.00 0.00 0.00 0.98
3102 6145 6.625873 TTTTTGTTATGTGGCCCATTTTTC 57.374 33.333 11.36 2.82 34.86 2.29
3103 6146 4.963318 TTGTTATGTGGCCCATTTTTCA 57.037 36.364 11.36 4.83 34.86 2.69
3104 6147 5.495926 TTGTTATGTGGCCCATTTTTCAT 57.504 34.783 11.36 0.00 34.86 2.57
3105 6148 5.495926 TGTTATGTGGCCCATTTTTCATT 57.504 34.783 11.36 0.00 34.86 2.57
3106 6149 5.486526 TGTTATGTGGCCCATTTTTCATTC 58.513 37.500 11.36 0.00 34.86 2.67
3107 6150 5.248020 TGTTATGTGGCCCATTTTTCATTCT 59.752 36.000 11.36 0.00 34.86 2.40
3108 6151 3.959535 TGTGGCCCATTTTTCATTCTC 57.040 42.857 0.00 0.00 0.00 2.87
3109 6152 3.237746 TGTGGCCCATTTTTCATTCTCA 58.762 40.909 0.00 0.00 0.00 3.27
3110 6153 3.006752 TGTGGCCCATTTTTCATTCTCAC 59.993 43.478 0.00 0.00 0.00 3.51
3111 6154 3.006752 GTGGCCCATTTTTCATTCTCACA 59.993 43.478 0.00 0.00 0.00 3.58
3112 6155 3.645212 TGGCCCATTTTTCATTCTCACAA 59.355 39.130 0.00 0.00 0.00 3.33
3113 6156 4.102210 TGGCCCATTTTTCATTCTCACAAA 59.898 37.500 0.00 0.00 0.00 2.83
3114 6157 4.692155 GGCCCATTTTTCATTCTCACAAAG 59.308 41.667 0.00 0.00 0.00 2.77
3115 6158 5.299949 GCCCATTTTTCATTCTCACAAAGT 58.700 37.500 0.00 0.00 0.00 2.66
3116 6159 5.178067 GCCCATTTTTCATTCTCACAAAGTG 59.822 40.000 0.00 0.00 34.45 3.16
3117 6160 6.282930 CCCATTTTTCATTCTCACAAAGTGT 58.717 36.000 0.00 0.00 34.79 3.55
3118 6161 6.421801 CCCATTTTTCATTCTCACAAAGTGTC 59.578 38.462 0.00 0.00 34.79 3.67
3119 6162 7.205297 CCATTTTTCATTCTCACAAAGTGTCT 58.795 34.615 0.00 0.00 34.79 3.41
3120 6163 8.352201 CCATTTTTCATTCTCACAAAGTGTCTA 58.648 33.333 0.00 0.00 34.79 2.59
3121 6164 9.390795 CATTTTTCATTCTCACAAAGTGTCTAG 57.609 33.333 0.00 0.00 34.79 2.43
3122 6165 8.731275 TTTTTCATTCTCACAAAGTGTCTAGA 57.269 30.769 0.00 0.00 34.79 2.43
3123 6166 7.953158 TTTCATTCTCACAAAGTGTCTAGAG 57.047 36.000 0.00 0.00 34.79 2.43
3124 6167 5.473931 TCATTCTCACAAAGTGTCTAGAGC 58.526 41.667 0.00 0.00 34.79 4.09
3125 6168 4.937201 TTCTCACAAAGTGTCTAGAGCA 57.063 40.909 0.00 0.00 34.79 4.26
3126 6169 4.244425 TCTCACAAAGTGTCTAGAGCAC 57.756 45.455 14.12 14.12 34.79 4.40
3127 6170 2.983136 CTCACAAAGTGTCTAGAGCACG 59.017 50.000 15.30 7.86 41.36 5.34
3128 6171 2.361119 TCACAAAGTGTCTAGAGCACGT 59.639 45.455 15.30 11.59 41.36 4.49
3129 6172 2.472861 CACAAAGTGTCTAGAGCACGTG 59.527 50.000 12.28 12.28 41.36 4.49
3130 6173 1.457303 CAAAGTGTCTAGAGCACGTGC 59.543 52.381 32.79 32.79 41.36 5.34
3141 6184 2.533318 GCACGTGCTAAAGCTGTCT 58.467 52.632 32.55 0.00 42.66 3.41
3142 6185 0.440371 GCACGTGCTAAAGCTGTCTC 59.560 55.000 32.55 0.00 42.66 3.36
3143 6186 1.937108 GCACGTGCTAAAGCTGTCTCT 60.937 52.381 32.55 0.00 42.66 3.10
3144 6187 2.408050 CACGTGCTAAAGCTGTCTCTT 58.592 47.619 0.82 0.00 42.66 2.85
3145 6188 2.410053 CACGTGCTAAAGCTGTCTCTTC 59.590 50.000 0.82 0.00 42.66 2.87
3146 6189 2.035961 ACGTGCTAAAGCTGTCTCTTCA 59.964 45.455 3.26 0.00 42.66 3.02
3147 6190 2.410053 CGTGCTAAAGCTGTCTCTTCAC 59.590 50.000 3.26 0.00 42.66 3.18
3148 6191 3.393800 GTGCTAAAGCTGTCTCTTCACA 58.606 45.455 3.26 0.00 42.66 3.58
3149 6192 3.809832 GTGCTAAAGCTGTCTCTTCACAA 59.190 43.478 3.26 0.00 42.66 3.33
3150 6193 4.273480 GTGCTAAAGCTGTCTCTTCACAAA 59.727 41.667 3.26 0.00 42.66 2.83
3151 6194 4.512944 TGCTAAAGCTGTCTCTTCACAAAG 59.487 41.667 3.26 0.00 42.66 2.77
3152 6195 4.752101 GCTAAAGCTGTCTCTTCACAAAGA 59.248 41.667 0.00 0.00 37.34 2.52
3153 6196 5.107143 GCTAAAGCTGTCTCTTCACAAAGAG 60.107 44.000 8.55 8.55 46.74 2.85
3154 6197 8.468701 GCTAAAGCTGTCTCTTCACAAAGAGC 62.469 46.154 9.76 6.51 45.98 4.09
3158 6201 4.379174 TCTTCACAAAGAGCCCGC 57.621 55.556 0.00 0.00 36.59 6.13
3159 6202 1.754745 TCTTCACAAAGAGCCCGCT 59.245 52.632 0.00 0.00 36.59 5.52
3160 6203 0.108585 TCTTCACAAAGAGCCCGCTT 59.891 50.000 0.00 0.00 36.59 4.68
3161 6204 1.346395 TCTTCACAAAGAGCCCGCTTA 59.654 47.619 0.00 0.00 36.59 3.09
3162 6205 1.464997 CTTCACAAAGAGCCCGCTTAC 59.535 52.381 0.00 0.00 34.14 2.34
3163 6206 0.321298 TCACAAAGAGCCCGCTTACC 60.321 55.000 0.00 0.00 0.00 2.85
3164 6207 0.321653 CACAAAGAGCCCGCTTACCT 60.322 55.000 0.00 0.00 0.00 3.08
3165 6208 0.400594 ACAAAGAGCCCGCTTACCTT 59.599 50.000 0.00 0.00 0.00 3.50
3166 6209 1.087501 CAAAGAGCCCGCTTACCTTC 58.912 55.000 0.00 0.00 0.00 3.46
3167 6210 0.984995 AAAGAGCCCGCTTACCTTCT 59.015 50.000 0.00 0.00 0.00 2.85
3168 6211 0.537653 AAGAGCCCGCTTACCTTCTC 59.462 55.000 0.00 0.00 0.00 2.87
3169 6212 0.324830 AGAGCCCGCTTACCTTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
3170 6213 0.103390 GAGCCCGCTTACCTTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20
3171 6214 0.324830 AGCCCGCTTACCTTCTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
3172 6215 0.103390 GCCCGCTTACCTTCTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20
3173 6216 0.747852 CCCGCTTACCTTCTCTCTCC 59.252 60.000 0.00 0.00 0.00 3.71
3174 6217 1.686741 CCCGCTTACCTTCTCTCTCCT 60.687 57.143 0.00 0.00 0.00 3.69
3175 6218 1.679153 CCGCTTACCTTCTCTCTCCTC 59.321 57.143 0.00 0.00 0.00 3.71
3176 6219 2.650322 CGCTTACCTTCTCTCTCCTCT 58.350 52.381 0.00 0.00 0.00 3.69
3177 6220 3.020984 CGCTTACCTTCTCTCTCCTCTT 58.979 50.000 0.00 0.00 0.00 2.85
3178 6221 3.066203 CGCTTACCTTCTCTCTCCTCTTC 59.934 52.174 0.00 0.00 0.00 2.87
3179 6222 4.278310 GCTTACCTTCTCTCTCCTCTTCT 58.722 47.826 0.00 0.00 0.00 2.85
3180 6223 4.338400 GCTTACCTTCTCTCTCCTCTTCTC 59.662 50.000 0.00 0.00 0.00 2.87
3181 6224 5.755849 CTTACCTTCTCTCTCCTCTTCTCT 58.244 45.833 0.00 0.00 0.00 3.10
3182 6225 4.675063 ACCTTCTCTCTCCTCTTCTCTT 57.325 45.455 0.00 0.00 0.00 2.85
3183 6226 5.010708 ACCTTCTCTCTCCTCTTCTCTTT 57.989 43.478 0.00 0.00 0.00 2.52
3184 6227 5.016831 ACCTTCTCTCTCCTCTTCTCTTTC 58.983 45.833 0.00 0.00 0.00 2.62
3185 6228 4.402474 CCTTCTCTCTCCTCTTCTCTTTCC 59.598 50.000 0.00 0.00 0.00 3.13
3186 6229 4.946160 TCTCTCTCCTCTTCTCTTTCCT 57.054 45.455 0.00 0.00 0.00 3.36
3187 6230 4.855340 TCTCTCTCCTCTTCTCTTTCCTC 58.145 47.826 0.00 0.00 0.00 3.71
3188 6231 3.954258 CTCTCTCCTCTTCTCTTTCCTCC 59.046 52.174 0.00 0.00 0.00 4.30
3189 6232 3.335183 TCTCTCCTCTTCTCTTTCCTCCA 59.665 47.826 0.00 0.00 0.00 3.86
3190 6233 4.093011 CTCTCCTCTTCTCTTTCCTCCAA 58.907 47.826 0.00 0.00 0.00 3.53
3191 6234 4.093011 TCTCCTCTTCTCTTTCCTCCAAG 58.907 47.826 0.00 0.00 0.00 3.61
3192 6235 3.837731 CTCCTCTTCTCTTTCCTCCAAGT 59.162 47.826 0.00 0.00 0.00 3.16
3193 6236 5.011982 TCCTCTTCTCTTTCCTCCAAGTA 57.988 43.478 0.00 0.00 0.00 2.24
3194 6237 5.403512 TCCTCTTCTCTTTCCTCCAAGTAA 58.596 41.667 0.00 0.00 0.00 2.24
3195 6238 5.482175 TCCTCTTCTCTTTCCTCCAAGTAAG 59.518 44.000 0.00 0.00 0.00 2.34
3196 6239 5.153950 TCTTCTCTTTCCTCCAAGTAAGC 57.846 43.478 0.00 0.00 0.00 3.09
3197 6240 4.593206 TCTTCTCTTTCCTCCAAGTAAGCA 59.407 41.667 0.00 0.00 0.00 3.91
3198 6241 4.543590 TCTCTTTCCTCCAAGTAAGCAG 57.456 45.455 0.00 0.00 0.00 4.24
3199 6242 4.160329 TCTCTTTCCTCCAAGTAAGCAGA 58.840 43.478 0.00 0.00 0.00 4.26
3200 6243 4.593206 TCTCTTTCCTCCAAGTAAGCAGAA 59.407 41.667 0.00 0.00 0.00 3.02
3201 6244 5.071788 TCTCTTTCCTCCAAGTAAGCAGAAA 59.928 40.000 0.00 0.00 0.00 2.52
3202 6245 5.880901 TCTTTCCTCCAAGTAAGCAGAAAT 58.119 37.500 0.00 0.00 0.00 2.17
3203 6246 7.016153 TCTTTCCTCCAAGTAAGCAGAAATA 57.984 36.000 0.00 0.00 0.00 1.40
3204 6247 7.633789 TCTTTCCTCCAAGTAAGCAGAAATAT 58.366 34.615 0.00 0.00 0.00 1.28
3205 6248 8.768397 TCTTTCCTCCAAGTAAGCAGAAATATA 58.232 33.333 0.00 0.00 0.00 0.86
3206 6249 8.732746 TTTCCTCCAAGTAAGCAGAAATATAC 57.267 34.615 0.00 0.00 0.00 1.47
3207 6250 7.676683 TCCTCCAAGTAAGCAGAAATATACT 57.323 36.000 0.00 0.00 0.00 2.12
3208 6251 8.777578 TCCTCCAAGTAAGCAGAAATATACTA 57.222 34.615 0.00 0.00 0.00 1.82
3209 6252 8.861086 TCCTCCAAGTAAGCAGAAATATACTAG 58.139 37.037 0.00 0.00 0.00 2.57
3210 6253 8.643324 CCTCCAAGTAAGCAGAAATATACTAGT 58.357 37.037 0.00 0.00 0.00 2.57
3228 6271 8.999220 ATACTAGTTTATTTCTTATAGCCCGC 57.001 34.615 0.00 0.00 0.00 6.13
3229 6272 7.063934 ACTAGTTTATTTCTTATAGCCCGCT 57.936 36.000 0.00 0.00 0.00 5.52
3230 6273 6.929606 ACTAGTTTATTTCTTATAGCCCGCTG 59.070 38.462 0.00 0.00 0.00 5.18
3231 6274 5.925509 AGTTTATTTCTTATAGCCCGCTGA 58.074 37.500 0.00 0.00 0.00 4.26
3232 6275 5.758784 AGTTTATTTCTTATAGCCCGCTGAC 59.241 40.000 0.00 0.00 0.00 3.51
3233 6276 5.546621 TTATTTCTTATAGCCCGCTGACT 57.453 39.130 0.00 0.00 0.00 3.41
3234 6277 3.454371 TTTCTTATAGCCCGCTGACTC 57.546 47.619 0.00 0.00 0.00 3.36
3235 6278 2.067365 TCTTATAGCCCGCTGACTCA 57.933 50.000 0.00 0.00 0.00 3.41
3236 6279 1.957177 TCTTATAGCCCGCTGACTCAG 59.043 52.381 1.21 1.21 34.12 3.35
3251 6294 5.708948 CTGACTCAGCTCTATTATACCTGC 58.291 45.833 0.00 0.00 0.00 4.85
3252 6295 5.389520 TGACTCAGCTCTATTATACCTGCT 58.610 41.667 0.00 0.00 0.00 4.24
3256 6299 4.697828 TCAGCTCTATTATACCTGCTCTCG 59.302 45.833 0.00 0.00 0.00 4.04
3271 6314 1.519455 CTCGTGGGACCAATCTCGC 60.519 63.158 0.00 0.00 31.93 5.03
3283 6334 5.298276 GGACCAATCTCGCTAGATAGATAGG 59.702 48.000 0.46 2.44 41.81 2.57
3286 6337 6.119536 CCAATCTCGCTAGATAGATAGGACT 58.880 44.000 0.46 0.00 41.81 3.85
3289 6340 7.907841 ATCTCGCTAGATAGATAGGACTAGA 57.092 40.000 0.00 0.00 40.82 2.43
3290 6341 7.104043 TCTCGCTAGATAGATAGGACTAGAC 57.896 44.000 0.00 0.00 35.69 2.59
3291 6342 5.893687 TCGCTAGATAGATAGGACTAGACG 58.106 45.833 0.00 0.00 35.69 4.18
3292 6343 5.045215 CGCTAGATAGATAGGACTAGACGG 58.955 50.000 0.00 0.00 35.69 4.79
3295 6346 5.425196 AGATAGATAGGACTAGACGGACC 57.575 47.826 0.00 0.00 0.00 4.46
3296 6347 4.845225 AGATAGATAGGACTAGACGGACCA 59.155 45.833 0.00 0.00 0.00 4.02
3297 6348 3.947612 AGATAGGACTAGACGGACCAA 57.052 47.619 0.00 0.00 0.00 3.67
3298 6349 4.456662 AGATAGGACTAGACGGACCAAT 57.543 45.455 0.00 0.00 0.00 3.16
3299 6350 4.400120 AGATAGGACTAGACGGACCAATC 58.600 47.826 0.00 0.00 0.00 2.67
3300 6351 2.830651 AGGACTAGACGGACCAATCT 57.169 50.000 0.00 1.10 0.00 2.40
3301 6352 2.657143 AGGACTAGACGGACCAATCTC 58.343 52.381 0.00 0.00 0.00 2.75
3302 6353 1.334243 GGACTAGACGGACCAATCTCG 59.666 57.143 0.00 0.00 0.00 4.04
3303 6354 0.739561 ACTAGACGGACCAATCTCGC 59.260 55.000 0.00 0.00 0.00 5.03
3304 6355 1.025812 CTAGACGGACCAATCTCGCT 58.974 55.000 0.00 0.00 0.00 4.93
3305 6356 2.219458 CTAGACGGACCAATCTCGCTA 58.781 52.381 0.00 0.00 0.00 4.26
3306 6357 1.025812 AGACGGACCAATCTCGCTAG 58.974 55.000 0.00 0.00 0.00 3.42
3307 6358 1.022735 GACGGACCAATCTCGCTAGA 58.977 55.000 0.00 0.00 35.80 2.43
3313 6364 5.221461 ACGGACCAATCTCGCTAGATAAAAT 60.221 40.000 0.46 0.00 41.81 1.82
3316 6367 6.483640 GGACCAATCTCGCTAGATAAAATTGT 59.516 38.462 0.46 0.00 41.81 2.71
3338 6389 2.125512 CTAGTGTGGTGCCGAGCC 60.126 66.667 0.00 0.00 0.00 4.70
3339 6390 3.665675 CTAGTGTGGTGCCGAGCCC 62.666 68.421 0.00 0.00 0.00 5.19
3369 6420 6.127730 GGTGTAAAATTAAGTAGCCTGTGCAT 60.128 38.462 0.00 0.00 41.13 3.96
3370 6421 6.967199 GTGTAAAATTAAGTAGCCTGTGCATC 59.033 38.462 0.00 0.00 41.13 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.982058 CGAGCATAGGAGAAACGGTAATC 59.018 47.826 0.00 0.00 0.00 1.75
82 83 4.980805 TTGACCTGGCCACGTCGC 62.981 66.667 24.17 8.16 0.00 5.19
105 106 1.128692 CTAGGCTAGTTTTGCGTGTGC 59.871 52.381 13.53 0.00 43.20 4.57
127 128 4.470334 AACTTATTACTTAACCGCCCGA 57.530 40.909 0.00 0.00 0.00 5.14
129 130 9.201127 CTAGAATAACTTATTACTTAACCGCCC 57.799 37.037 0.00 0.00 0.00 6.13
148 150 9.104965 CGGTGGAAACAATAATCAACTAGAATA 57.895 33.333 0.00 0.00 46.06 1.75
149 151 7.415206 GCGGTGGAAACAATAATCAACTAGAAT 60.415 37.037 0.00 0.00 46.06 2.40
151 153 5.353123 GCGGTGGAAACAATAATCAACTAGA 59.647 40.000 0.00 0.00 46.06 2.43
152 154 5.448632 GGCGGTGGAAACAATAATCAACTAG 60.449 44.000 0.00 0.00 46.06 2.57
153 155 4.396790 GGCGGTGGAAACAATAATCAACTA 59.603 41.667 0.00 0.00 46.06 2.24
154 156 3.192633 GGCGGTGGAAACAATAATCAACT 59.807 43.478 0.00 0.00 46.06 3.16
155 157 3.057174 TGGCGGTGGAAACAATAATCAAC 60.057 43.478 0.00 0.00 46.06 3.18
156 158 3.157881 TGGCGGTGGAAACAATAATCAA 58.842 40.909 0.00 0.00 46.06 2.57
157 159 2.752354 CTGGCGGTGGAAACAATAATCA 59.248 45.455 0.00 0.00 46.06 2.57
158 160 2.479560 GCTGGCGGTGGAAACAATAATC 60.480 50.000 0.00 0.00 46.06 1.75
159 161 1.476488 GCTGGCGGTGGAAACAATAAT 59.524 47.619 0.00 0.00 46.06 1.28
160 162 0.885196 GCTGGCGGTGGAAACAATAA 59.115 50.000 0.00 0.00 46.06 1.40
161 163 0.963355 GGCTGGCGGTGGAAACAATA 60.963 55.000 0.00 0.00 46.06 1.90
185 187 5.648330 ACTCCCTTCCAGTTTAGTTTCTT 57.352 39.130 0.00 0.00 0.00 2.52
233 236 1.352156 CGAGGAGTACGCTGGCAAAC 61.352 60.000 0.00 0.00 0.00 2.93
236 239 2.360726 TCGAGGAGTACGCTGGCA 60.361 61.111 0.00 0.00 0.00 4.92
237 240 2.102553 GTCGAGGAGTACGCTGGC 59.897 66.667 0.00 0.00 0.00 4.85
254 257 8.512956 AGTGAAAATTCAAGAATGATGTCTCTG 58.487 33.333 0.00 0.00 39.21 3.35
277 296 2.069273 GCAGGTTGCACACTACTAGTG 58.931 52.381 13.77 13.77 44.26 2.74
278 297 1.336887 CGCAGGTTGCACACTACTAGT 60.337 52.381 0.00 0.00 45.36 2.57
279 298 1.067846 TCGCAGGTTGCACACTACTAG 60.068 52.381 1.69 0.00 45.36 2.57
325 347 2.764314 ATGCTTCAATGCGGACGGC 61.764 57.895 0.00 0.00 43.96 5.68
326 348 1.063006 CATGCTTCAATGCGGACGG 59.937 57.895 0.00 0.00 35.36 4.79
393 434 2.858158 GGGTCAGTTAACGTGCGC 59.142 61.111 0.00 0.00 0.00 6.09
489 534 3.620300 TACGTTGCGCCGGTGAGAG 62.620 63.158 21.76 8.90 0.00 3.20
491 536 3.475774 GTACGTTGCGCCGGTGAG 61.476 66.667 21.76 8.91 0.00 3.51
513 558 3.991051 CACGGAGGTGGCAGTCGT 61.991 66.667 0.00 0.00 40.58 4.34
538 583 1.207593 CTGTGGCTGCAGTAAACGC 59.792 57.895 16.64 10.51 0.00 4.84
539 584 1.207593 GCTGTGGCTGCAGTAAACG 59.792 57.895 16.64 8.75 38.65 3.60
652 757 4.148825 CCCGGCTCTCCTTCCACG 62.149 72.222 0.00 0.00 0.00 4.94
847 954 2.120854 GGGGATGGGGATGGGGAT 60.121 66.667 0.00 0.00 0.00 3.85
848 955 2.615153 AATGGGGATGGGGATGGGGA 62.615 60.000 0.00 0.00 0.00 4.81
849 956 2.097978 GAATGGGGATGGGGATGGGG 62.098 65.000 0.00 0.00 0.00 4.96
850 957 1.466526 GAATGGGGATGGGGATGGG 59.533 63.158 0.00 0.00 0.00 4.00
851 958 1.466526 GGAATGGGGATGGGGATGG 59.533 63.158 0.00 0.00 0.00 3.51
852 959 1.076095 AGGGAATGGGGATGGGGATG 61.076 60.000 0.00 0.00 0.00 3.51
934 1048 2.182030 GGACGGGAAGCACGAGAG 59.818 66.667 0.00 0.00 34.93 3.20
935 1049 3.744719 CGGACGGGAAGCACGAGA 61.745 66.667 0.00 0.00 34.93 4.04
996 1122 0.179171 CTACAACGACGTCCATCGCT 60.179 55.000 10.58 0.00 46.22 4.93
1011 1137 1.605058 GAGAAGACGGCAGCCCTACA 61.605 60.000 5.63 0.00 0.00 2.74
1014 1140 3.394836 GGAGAAGACGGCAGCCCT 61.395 66.667 5.63 0.00 0.00 5.19
1229 1355 4.148825 CCTCAGCGTCTTCCCCGG 62.149 72.222 0.00 0.00 0.00 5.73
1230 1356 4.821589 GCCTCAGCGTCTTCCCCG 62.822 72.222 0.00 0.00 0.00 5.73
1233 1362 3.082579 ATCGGCCTCAGCGTCTTCC 62.083 63.158 0.00 0.00 41.24 3.46
1236 1365 4.521062 GCATCGGCCTCAGCGTCT 62.521 66.667 0.00 0.00 41.24 4.18
1258 1387 3.164011 CTCGTTGACGTCGTCGGC 61.164 66.667 24.15 13.60 46.54 5.54
1261 1390 1.791283 CGGACTCGTTGACGTCGTC 60.791 63.158 18.51 18.51 40.80 4.20
1997 2132 3.793144 CCTTGTCTGCTTCGCCGC 61.793 66.667 0.00 0.00 0.00 6.53
2196 2348 1.000843 TGTACATTCAGTGAGTGCGCT 59.999 47.619 15.01 0.00 34.57 5.92
2199 2351 4.806247 GTCCTATGTACATTCAGTGAGTGC 59.194 45.833 14.77 4.77 0.00 4.40
2416 2579 4.143473 CGTGTTACGGTTTTACTAGTGCTG 60.143 45.833 5.39 1.09 38.08 4.41
2417 2580 3.983344 CGTGTTACGGTTTTACTAGTGCT 59.017 43.478 5.39 0.00 38.08 4.40
2446 2610 0.461163 TTACACGCCACATCGATGGG 60.461 55.000 28.09 24.82 40.43 4.00
2541 2737 4.676951 TCCAGCCTTTTGCCCCCG 62.677 66.667 0.00 0.00 42.71 5.73
2627 2827 0.179127 CCCGATCGATCCATCCATCG 60.179 60.000 18.66 8.98 44.07 3.84
2720 2927 2.046023 CAGAGGCATCCAACGGCA 60.046 61.111 0.00 0.00 0.00 5.69
2810 5846 3.320879 ATGGAGGAGTGCTGTGCCG 62.321 63.158 0.00 0.00 0.00 5.69
2811 5847 1.451028 GATGGAGGAGTGCTGTGCC 60.451 63.158 0.00 0.00 0.00 5.01
2812 5848 1.812922 CGATGGAGGAGTGCTGTGC 60.813 63.158 0.00 0.00 0.00 4.57
2813 5849 1.153489 CCGATGGAGGAGTGCTGTG 60.153 63.158 0.00 0.00 0.00 3.66
2814 5850 3.023949 GCCGATGGAGGAGTGCTGT 62.024 63.158 0.00 0.00 0.00 4.40
2890 5933 4.722700 CCCGGACCCAACAGCCAG 62.723 72.222 0.73 0.00 0.00 4.85
2921 5964 3.857854 GACAGCAGCGCATGTCCG 61.858 66.667 22.50 4.90 39.94 4.79
2922 5965 2.435586 AGACAGCAGCGCATGTCC 60.436 61.111 26.69 14.91 45.61 4.02
2966 6009 7.835822 AGCTATACTATTAACCATGCTCTGAG 58.164 38.462 0.00 0.00 0.00 3.35
2967 6010 7.782897 AGCTATACTATTAACCATGCTCTGA 57.217 36.000 0.00 0.00 0.00 3.27
2968 6011 7.704472 GCTAGCTATACTATTAACCATGCTCTG 59.296 40.741 7.70 0.00 0.00 3.35
2969 6012 7.617723 AGCTAGCTATACTATTAACCATGCTCT 59.382 37.037 17.69 0.00 0.00 4.09
2970 6013 7.704472 CAGCTAGCTATACTATTAACCATGCTC 59.296 40.741 18.86 0.00 0.00 4.26
2971 6014 7.551585 CAGCTAGCTATACTATTAACCATGCT 58.448 38.462 18.86 0.00 0.00 3.79
2972 6015 6.256757 GCAGCTAGCTATACTATTAACCATGC 59.743 42.308 18.86 7.81 41.15 4.06
2973 6016 7.763172 GCAGCTAGCTATACTATTAACCATG 57.237 40.000 18.86 0.72 41.15 3.66
3000 6043 1.876156 GACATGGCACTGGCTTATAGC 59.124 52.381 3.97 0.00 41.46 2.97
3001 6044 3.198409 TGACATGGCACTGGCTTATAG 57.802 47.619 0.00 0.00 40.87 1.31
3002 6045 3.392285 AGATGACATGGCACTGGCTTATA 59.608 43.478 1.45 0.00 40.87 0.98
3003 6046 2.174210 AGATGACATGGCACTGGCTTAT 59.826 45.455 1.45 0.00 40.87 1.73
3004 6047 1.561076 AGATGACATGGCACTGGCTTA 59.439 47.619 1.45 0.00 40.87 3.09
3005 6048 0.330604 AGATGACATGGCACTGGCTT 59.669 50.000 1.45 0.00 40.87 4.35
3006 6049 1.134280 GTAGATGACATGGCACTGGCT 60.134 52.381 1.45 1.41 40.87 4.75
3007 6050 1.303309 GTAGATGACATGGCACTGGC 58.697 55.000 1.45 0.00 40.13 4.85
3008 6051 2.093288 ACTGTAGATGACATGGCACTGG 60.093 50.000 1.45 1.87 37.45 4.00
3009 6052 3.193263 GACTGTAGATGACATGGCACTG 58.807 50.000 1.45 0.00 37.45 3.66
3010 6053 2.169352 GGACTGTAGATGACATGGCACT 59.831 50.000 1.45 6.11 37.45 4.40
3011 6054 2.093500 TGGACTGTAGATGACATGGCAC 60.093 50.000 1.45 0.00 37.45 5.01
3012 6055 2.187100 TGGACTGTAGATGACATGGCA 58.813 47.619 2.18 2.18 37.45 4.92
3013 6056 2.988010 TGGACTGTAGATGACATGGC 57.012 50.000 0.00 0.00 37.45 4.40
3014 6057 9.212641 CTATAAAATGGACTGTAGATGACATGG 57.787 37.037 0.00 0.00 37.45 3.66
3015 6058 8.715998 GCTATAAAATGGACTGTAGATGACATG 58.284 37.037 0.00 0.00 37.45 3.21
3016 6059 7.880195 GGCTATAAAATGGACTGTAGATGACAT 59.120 37.037 0.00 0.00 37.45 3.06
3017 6060 7.147567 TGGCTATAAAATGGACTGTAGATGACA 60.148 37.037 0.00 0.00 36.35 3.58
3018 6061 7.217200 TGGCTATAAAATGGACTGTAGATGAC 58.783 38.462 0.00 0.00 0.00 3.06
3019 6062 7.373617 TGGCTATAAAATGGACTGTAGATGA 57.626 36.000 0.00 0.00 0.00 2.92
3020 6063 7.498900 TGTTGGCTATAAAATGGACTGTAGATG 59.501 37.037 0.00 0.00 0.00 2.90
3021 6064 7.573710 TGTTGGCTATAAAATGGACTGTAGAT 58.426 34.615 0.00 0.00 0.00 1.98
3022 6065 6.953101 TGTTGGCTATAAAATGGACTGTAGA 58.047 36.000 0.00 0.00 0.00 2.59
3023 6066 7.283127 ACATGTTGGCTATAAAATGGACTGTAG 59.717 37.037 0.00 0.00 0.00 2.74
3024 6067 7.116075 ACATGTTGGCTATAAAATGGACTGTA 58.884 34.615 0.00 0.00 0.00 2.74
3025 6068 5.951747 ACATGTTGGCTATAAAATGGACTGT 59.048 36.000 0.00 0.00 0.00 3.55
3026 6069 6.455360 ACATGTTGGCTATAAAATGGACTG 57.545 37.500 0.00 0.00 0.00 3.51
3027 6070 9.860650 TTATACATGTTGGCTATAAAATGGACT 57.139 29.630 2.30 0.00 0.00 3.85
3079 6122 6.122277 TGAAAAATGGGCCACATAACAAAAA 58.878 32.000 9.28 0.00 39.40 1.94
3080 6123 5.684704 TGAAAAATGGGCCACATAACAAAA 58.315 33.333 9.28 0.00 39.40 2.44
3081 6124 5.296151 TGAAAAATGGGCCACATAACAAA 57.704 34.783 9.28 0.00 39.40 2.83
3082 6125 4.963318 TGAAAAATGGGCCACATAACAA 57.037 36.364 9.28 0.00 39.40 2.83
3083 6126 5.248020 AGAATGAAAAATGGGCCACATAACA 59.752 36.000 9.28 7.74 39.40 2.41
3084 6127 5.733676 AGAATGAAAAATGGGCCACATAAC 58.266 37.500 9.28 5.80 39.40 1.89
3085 6128 5.483231 TGAGAATGAAAAATGGGCCACATAA 59.517 36.000 9.28 0.00 39.40 1.90
3086 6129 5.022122 TGAGAATGAAAAATGGGCCACATA 58.978 37.500 9.28 0.00 39.40 2.29
3087 6130 3.839490 TGAGAATGAAAAATGGGCCACAT 59.161 39.130 9.28 4.20 43.07 3.21
3088 6131 3.006752 GTGAGAATGAAAAATGGGCCACA 59.993 43.478 9.28 1.19 0.00 4.17
3089 6132 3.006752 TGTGAGAATGAAAAATGGGCCAC 59.993 43.478 9.28 0.00 0.00 5.01
3090 6133 3.237746 TGTGAGAATGAAAAATGGGCCA 58.762 40.909 9.61 9.61 0.00 5.36
3091 6134 3.959535 TGTGAGAATGAAAAATGGGCC 57.040 42.857 0.00 0.00 0.00 5.80
3092 6135 5.178067 CACTTTGTGAGAATGAAAAATGGGC 59.822 40.000 0.00 0.00 35.23 5.36
3093 6136 6.282930 ACACTTTGTGAGAATGAAAAATGGG 58.717 36.000 4.61 0.00 36.96 4.00
3094 6137 7.205297 AGACACTTTGTGAGAATGAAAAATGG 58.795 34.615 4.61 0.00 36.96 3.16
3095 6138 9.390795 CTAGACACTTTGTGAGAATGAAAAATG 57.609 33.333 4.61 0.00 36.96 2.32
3096 6139 9.342308 TCTAGACACTTTGTGAGAATGAAAAAT 57.658 29.630 4.61 0.00 36.96 1.82
3097 6140 8.731275 TCTAGACACTTTGTGAGAATGAAAAA 57.269 30.769 4.61 0.00 36.96 1.94
3098 6141 7.041780 GCTCTAGACACTTTGTGAGAATGAAAA 60.042 37.037 4.61 0.00 36.96 2.29
3099 6142 6.425114 GCTCTAGACACTTTGTGAGAATGAAA 59.575 38.462 4.61 0.00 36.96 2.69
3100 6143 5.928839 GCTCTAGACACTTTGTGAGAATGAA 59.071 40.000 4.61 0.00 36.96 2.57
3101 6144 5.011023 TGCTCTAGACACTTTGTGAGAATGA 59.989 40.000 4.61 0.00 36.96 2.57
3102 6145 5.119898 GTGCTCTAGACACTTTGTGAGAATG 59.880 44.000 14.48 0.00 36.96 2.67
3103 6146 5.233988 GTGCTCTAGACACTTTGTGAGAAT 58.766 41.667 14.48 0.00 36.96 2.40
3104 6147 4.621991 GTGCTCTAGACACTTTGTGAGAA 58.378 43.478 14.48 0.00 36.96 2.87
3105 6148 3.304726 CGTGCTCTAGACACTTTGTGAGA 60.305 47.826 17.59 0.00 36.96 3.27
3106 6149 2.983136 CGTGCTCTAGACACTTTGTGAG 59.017 50.000 17.59 0.00 36.96 3.51
3107 6150 2.361119 ACGTGCTCTAGACACTTTGTGA 59.639 45.455 17.59 0.00 36.96 3.58
3108 6151 2.472861 CACGTGCTCTAGACACTTTGTG 59.527 50.000 0.82 14.91 39.75 3.33
3109 6152 2.743938 CACGTGCTCTAGACACTTTGT 58.256 47.619 0.82 9.57 35.84 2.83
3110 6153 1.457303 GCACGTGCTCTAGACACTTTG 59.543 52.381 32.55 15.40 38.21 2.77
3111 6154 1.784525 GCACGTGCTCTAGACACTTT 58.215 50.000 32.55 7.03 38.21 2.66
3112 6155 3.498676 GCACGTGCTCTAGACACTT 57.501 52.632 32.55 9.80 38.21 3.16
3123 6166 0.440371 GAGACAGCTTTAGCACGTGC 59.560 55.000 32.79 32.79 45.16 5.34
3124 6167 2.071688 AGAGACAGCTTTAGCACGTG 57.928 50.000 12.28 12.28 45.16 4.49
3125 6168 2.035961 TGAAGAGACAGCTTTAGCACGT 59.964 45.455 4.33 0.57 45.16 4.49
3126 6169 2.410053 GTGAAGAGACAGCTTTAGCACG 59.590 50.000 4.33 0.00 45.16 5.34
3127 6170 3.393800 TGTGAAGAGACAGCTTTAGCAC 58.606 45.455 4.33 0.00 45.16 4.40
3128 6171 3.751479 TGTGAAGAGACAGCTTTAGCA 57.249 42.857 4.33 0.00 45.16 3.49
3129 6172 4.752101 TCTTTGTGAAGAGACAGCTTTAGC 59.248 41.667 0.00 0.00 36.99 3.09
3141 6184 0.108585 AAGCGGGCTCTTTGTGAAGA 59.891 50.000 0.00 0.00 39.54 2.87
3142 6185 1.464997 GTAAGCGGGCTCTTTGTGAAG 59.535 52.381 0.00 0.00 0.00 3.02
3143 6186 1.519408 GTAAGCGGGCTCTTTGTGAA 58.481 50.000 0.00 0.00 0.00 3.18
3144 6187 0.321298 GGTAAGCGGGCTCTTTGTGA 60.321 55.000 0.00 0.00 0.00 3.58
3145 6188 0.321653 AGGTAAGCGGGCTCTTTGTG 60.322 55.000 0.00 0.00 0.00 3.33
3146 6189 0.400594 AAGGTAAGCGGGCTCTTTGT 59.599 50.000 0.00 0.00 0.00 2.83
3147 6190 1.087501 GAAGGTAAGCGGGCTCTTTG 58.912 55.000 0.00 0.00 0.00 2.77
3148 6191 0.984995 AGAAGGTAAGCGGGCTCTTT 59.015 50.000 0.00 0.00 0.00 2.52
3149 6192 0.537653 GAGAAGGTAAGCGGGCTCTT 59.462 55.000 0.00 0.00 0.00 2.85
3150 6193 0.324830 AGAGAAGGTAAGCGGGCTCT 60.325 55.000 0.00 0.00 0.00 4.09
3151 6194 0.103390 GAGAGAAGGTAAGCGGGCTC 59.897 60.000 0.00 0.00 0.00 4.70
3152 6195 0.324830 AGAGAGAAGGTAAGCGGGCT 60.325 55.000 0.00 0.00 0.00 5.19
3153 6196 0.103390 GAGAGAGAAGGTAAGCGGGC 59.897 60.000 0.00 0.00 0.00 6.13
3154 6197 0.747852 GGAGAGAGAAGGTAAGCGGG 59.252 60.000 0.00 0.00 0.00 6.13
3155 6198 1.679153 GAGGAGAGAGAAGGTAAGCGG 59.321 57.143 0.00 0.00 0.00 5.52
3156 6199 2.650322 AGAGGAGAGAGAAGGTAAGCG 58.350 52.381 0.00 0.00 0.00 4.68
3157 6200 4.278310 AGAAGAGGAGAGAGAAGGTAAGC 58.722 47.826 0.00 0.00 0.00 3.09
3158 6201 5.755849 AGAGAAGAGGAGAGAGAAGGTAAG 58.244 45.833 0.00 0.00 0.00 2.34
3159 6202 5.789574 AGAGAAGAGGAGAGAGAAGGTAA 57.210 43.478 0.00 0.00 0.00 2.85
3160 6203 5.789574 AAGAGAAGAGGAGAGAGAAGGTA 57.210 43.478 0.00 0.00 0.00 3.08
3161 6204 4.675063 AAGAGAAGAGGAGAGAGAAGGT 57.325 45.455 0.00 0.00 0.00 3.50
3162 6205 4.402474 GGAAAGAGAAGAGGAGAGAGAAGG 59.598 50.000 0.00 0.00 0.00 3.46
3163 6206 5.264395 AGGAAAGAGAAGAGGAGAGAGAAG 58.736 45.833 0.00 0.00 0.00 2.85
3164 6207 5.261216 GAGGAAAGAGAAGAGGAGAGAGAA 58.739 45.833 0.00 0.00 0.00 2.87
3165 6208 4.325030 GGAGGAAAGAGAAGAGGAGAGAGA 60.325 50.000 0.00 0.00 0.00 3.10
3166 6209 3.954258 GGAGGAAAGAGAAGAGGAGAGAG 59.046 52.174 0.00 0.00 0.00 3.20
3167 6210 3.335183 TGGAGGAAAGAGAAGAGGAGAGA 59.665 47.826 0.00 0.00 0.00 3.10
3168 6211 3.707316 TGGAGGAAAGAGAAGAGGAGAG 58.293 50.000 0.00 0.00 0.00 3.20
3169 6212 3.835478 TGGAGGAAAGAGAAGAGGAGA 57.165 47.619 0.00 0.00 0.00 3.71
3170 6213 3.837731 ACTTGGAGGAAAGAGAAGAGGAG 59.162 47.826 0.00 0.00 0.00 3.69
3171 6214 3.863086 ACTTGGAGGAAAGAGAAGAGGA 58.137 45.455 0.00 0.00 0.00 3.71
3172 6215 5.729510 CTTACTTGGAGGAAAGAGAAGAGG 58.270 45.833 0.00 0.00 31.24 3.69
3173 6216 5.175127 GCTTACTTGGAGGAAAGAGAAGAG 58.825 45.833 0.00 0.00 31.24 2.85
3174 6217 4.593206 TGCTTACTTGGAGGAAAGAGAAGA 59.407 41.667 0.00 0.00 31.24 2.87
3175 6218 4.899502 TGCTTACTTGGAGGAAAGAGAAG 58.100 43.478 0.00 0.00 32.04 2.85
3176 6219 4.593206 TCTGCTTACTTGGAGGAAAGAGAA 59.407 41.667 0.00 0.00 0.00 2.87
3177 6220 4.160329 TCTGCTTACTTGGAGGAAAGAGA 58.840 43.478 0.00 0.00 0.00 3.10
3178 6221 4.543590 TCTGCTTACTTGGAGGAAAGAG 57.456 45.455 0.00 0.00 0.00 2.85
3179 6222 4.974645 TTCTGCTTACTTGGAGGAAAGA 57.025 40.909 0.00 0.00 0.00 2.52
3180 6223 7.872113 ATATTTCTGCTTACTTGGAGGAAAG 57.128 36.000 0.00 0.00 0.00 2.62
3181 6224 8.548877 AGTATATTTCTGCTTACTTGGAGGAAA 58.451 33.333 0.00 0.00 0.00 3.13
3182 6225 8.090788 AGTATATTTCTGCTTACTTGGAGGAA 57.909 34.615 0.00 0.00 0.00 3.36
3183 6226 7.676683 AGTATATTTCTGCTTACTTGGAGGA 57.323 36.000 0.00 0.00 0.00 3.71
3184 6227 8.643324 ACTAGTATATTTCTGCTTACTTGGAGG 58.357 37.037 0.00 0.00 0.00 4.30
3203 6246 8.813951 AGCGGGCTATAAGAAATAAACTAGTAT 58.186 33.333 0.00 0.00 0.00 2.12
3204 6247 8.086522 CAGCGGGCTATAAGAAATAAACTAGTA 58.913 37.037 0.00 0.00 0.00 1.82
3205 6248 6.929606 CAGCGGGCTATAAGAAATAAACTAGT 59.070 38.462 0.00 0.00 0.00 2.57
3206 6249 7.116519 GTCAGCGGGCTATAAGAAATAAACTAG 59.883 40.741 0.00 0.00 0.00 2.57
3207 6250 6.927381 GTCAGCGGGCTATAAGAAATAAACTA 59.073 38.462 0.00 0.00 0.00 2.24
3208 6251 5.758784 GTCAGCGGGCTATAAGAAATAAACT 59.241 40.000 0.00 0.00 0.00 2.66
3209 6252 5.758784 AGTCAGCGGGCTATAAGAAATAAAC 59.241 40.000 0.00 0.00 0.00 2.01
3210 6253 5.925509 AGTCAGCGGGCTATAAGAAATAAA 58.074 37.500 0.00 0.00 0.00 1.40
3211 6254 5.069914 TGAGTCAGCGGGCTATAAGAAATAA 59.930 40.000 0.00 0.00 0.00 1.40
3212 6255 4.587262 TGAGTCAGCGGGCTATAAGAAATA 59.413 41.667 0.00 0.00 0.00 1.40
3213 6256 3.388024 TGAGTCAGCGGGCTATAAGAAAT 59.612 43.478 0.00 0.00 0.00 2.17
3214 6257 2.764010 TGAGTCAGCGGGCTATAAGAAA 59.236 45.455 0.00 0.00 0.00 2.52
3215 6258 2.362397 CTGAGTCAGCGGGCTATAAGAA 59.638 50.000 7.33 0.00 0.00 2.52
3216 6259 1.957177 CTGAGTCAGCGGGCTATAAGA 59.043 52.381 7.33 0.00 0.00 2.10
3217 6260 2.430546 CTGAGTCAGCGGGCTATAAG 57.569 55.000 7.33 0.00 0.00 1.73
3228 6271 5.476599 AGCAGGTATAATAGAGCTGAGTCAG 59.523 44.000 17.00 16.21 43.59 3.51
3229 6272 5.389520 AGCAGGTATAATAGAGCTGAGTCA 58.610 41.667 17.00 0.00 43.59 3.41
3230 6273 5.710099 AGAGCAGGTATAATAGAGCTGAGTC 59.290 44.000 17.00 11.96 43.59 3.36
3231 6274 5.640147 AGAGCAGGTATAATAGAGCTGAGT 58.360 41.667 17.00 4.04 43.59 3.41
3232 6275 5.163764 CGAGAGCAGGTATAATAGAGCTGAG 60.164 48.000 17.00 0.42 43.59 3.35
3233 6276 4.697828 CGAGAGCAGGTATAATAGAGCTGA 59.302 45.833 17.00 0.00 43.59 4.26
3234 6277 4.457603 ACGAGAGCAGGTATAATAGAGCTG 59.542 45.833 9.48 9.48 43.70 4.24
3235 6278 4.457603 CACGAGAGCAGGTATAATAGAGCT 59.542 45.833 0.00 0.00 34.61 4.09
3236 6279 4.380023 CCACGAGAGCAGGTATAATAGAGC 60.380 50.000 0.00 0.00 0.00 4.09
3237 6280 4.156922 CCCACGAGAGCAGGTATAATAGAG 59.843 50.000 0.00 0.00 0.00 2.43
3238 6281 4.079970 CCCACGAGAGCAGGTATAATAGA 58.920 47.826 0.00 0.00 0.00 1.98
3239 6282 4.079970 TCCCACGAGAGCAGGTATAATAG 58.920 47.826 0.00 0.00 0.00 1.73
3240 6283 3.825014 GTCCCACGAGAGCAGGTATAATA 59.175 47.826 0.00 0.00 0.00 0.98
3241 6284 2.628657 GTCCCACGAGAGCAGGTATAAT 59.371 50.000 0.00 0.00 0.00 1.28
3242 6285 2.029623 GTCCCACGAGAGCAGGTATAA 58.970 52.381 0.00 0.00 0.00 0.98
3243 6286 1.688772 GTCCCACGAGAGCAGGTATA 58.311 55.000 0.00 0.00 0.00 1.47
3244 6287 1.043673 GGTCCCACGAGAGCAGGTAT 61.044 60.000 0.00 0.00 34.37 2.73
3245 6288 1.681327 GGTCCCACGAGAGCAGGTA 60.681 63.158 0.00 0.00 34.37 3.08
3246 6289 2.997897 GGTCCCACGAGAGCAGGT 60.998 66.667 0.00 0.00 34.37 4.00
3247 6290 1.903877 ATTGGTCCCACGAGAGCAGG 61.904 60.000 0.00 0.00 44.44 4.85
3248 6291 0.460987 GATTGGTCCCACGAGAGCAG 60.461 60.000 0.00 0.00 44.44 4.24
3249 6292 0.904865 AGATTGGTCCCACGAGAGCA 60.905 55.000 0.00 0.00 42.25 4.26
3250 6293 0.179097 GAGATTGGTCCCACGAGAGC 60.179 60.000 0.00 0.00 34.81 4.09
3251 6294 0.101399 CGAGATTGGTCCCACGAGAG 59.899 60.000 0.00 0.00 0.00 3.20
3252 6295 1.945354 GCGAGATTGGTCCCACGAGA 61.945 60.000 0.00 0.00 0.00 4.04
3256 6299 1.112113 TCTAGCGAGATTGGTCCCAC 58.888 55.000 0.00 0.00 0.00 4.61
3271 6314 6.154877 TGGTCCGTCTAGTCCTATCTATCTAG 59.845 46.154 0.00 0.00 33.41 2.43
3283 6334 1.268640 GCGAGATTGGTCCGTCTAGTC 60.269 57.143 0.00 0.00 0.00 2.59
3286 6337 2.158856 TCTAGCGAGATTGGTCCGTCTA 60.159 50.000 0.00 0.00 0.00 2.59
3289 6340 1.693627 ATCTAGCGAGATTGGTCCGT 58.306 50.000 3.13 0.00 39.56 4.69
3290 6341 3.917329 TTATCTAGCGAGATTGGTCCG 57.083 47.619 14.86 0.00 39.56 4.79
3291 6342 6.483640 ACAATTTTATCTAGCGAGATTGGTCC 59.516 38.462 14.86 0.00 39.56 4.46
3292 6343 7.484035 ACAATTTTATCTAGCGAGATTGGTC 57.516 36.000 14.86 0.00 39.56 4.02
3295 6346 7.585573 GCAGAACAATTTTATCTAGCGAGATTG 59.414 37.037 14.86 9.70 39.56 2.67
3296 6347 7.497249 AGCAGAACAATTTTATCTAGCGAGATT 59.503 33.333 14.86 0.00 39.56 2.40
3297 6348 6.989169 AGCAGAACAATTTTATCTAGCGAGAT 59.011 34.615 14.10 14.10 44.90 2.75
3298 6349 6.341316 AGCAGAACAATTTTATCTAGCGAGA 58.659 36.000 0.00 0.00 35.71 4.04
3299 6350 6.595772 AGCAGAACAATTTTATCTAGCGAG 57.404 37.500 0.00 0.00 0.00 5.03
3300 6351 7.222805 CACTAGCAGAACAATTTTATCTAGCGA 59.777 37.037 0.00 0.00 0.00 4.93
3301 6352 7.010552 ACACTAGCAGAACAATTTTATCTAGCG 59.989 37.037 0.00 0.00 0.00 4.26
3302 6353 8.119226 CACACTAGCAGAACAATTTTATCTAGC 58.881 37.037 0.00 0.00 0.00 3.42
3303 6354 8.607459 CCACACTAGCAGAACAATTTTATCTAG 58.393 37.037 0.00 0.00 0.00 2.43
3304 6355 8.100791 ACCACACTAGCAGAACAATTTTATCTA 58.899 33.333 0.00 0.00 0.00 1.98
3305 6356 6.942576 ACCACACTAGCAGAACAATTTTATCT 59.057 34.615 0.00 0.00 0.00 1.98
3306 6357 7.023575 CACCACACTAGCAGAACAATTTTATC 58.976 38.462 0.00 0.00 0.00 1.75
3307 6358 6.570378 GCACCACACTAGCAGAACAATTTTAT 60.570 38.462 0.00 0.00 0.00 1.40
3313 6364 1.593196 GCACCACACTAGCAGAACAA 58.407 50.000 0.00 0.00 0.00 2.83
3316 6367 1.005037 CGGCACCACACTAGCAGAA 60.005 57.895 0.00 0.00 0.00 3.02
3338 6389 4.260091 GCTACTTAATTTTACACCGCTCGG 60.260 45.833 6.79 6.79 42.03 4.63
3339 6390 4.260091 GGCTACTTAATTTTACACCGCTCG 60.260 45.833 0.00 0.00 0.00 5.03
3340 6391 4.874396 AGGCTACTTAATTTTACACCGCTC 59.126 41.667 0.00 0.00 0.00 5.03
3341 6392 4.634443 CAGGCTACTTAATTTTACACCGCT 59.366 41.667 0.00 0.00 0.00 5.52
3342 6393 4.393990 ACAGGCTACTTAATTTTACACCGC 59.606 41.667 0.00 0.00 0.00 5.68
3343 6394 5.672819 GCACAGGCTACTTAATTTTACACCG 60.673 44.000 0.00 0.00 36.96 4.94
3369 6420 1.841556 ACTCTTCAACCCCGCCAGA 60.842 57.895 0.00 0.00 0.00 3.86
3370 6421 1.672356 CACTCTTCAACCCCGCCAG 60.672 63.158 0.00 0.00 0.00 4.85
3398 6453 5.805994 GCTTCGTTAGCTGTACAGTTAAGAT 59.194 40.000 26.64 3.92 46.77 2.40
3399 6454 5.159209 GCTTCGTTAGCTGTACAGTTAAGA 58.841 41.667 26.64 21.95 46.77 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.