Multiple sequence alignment - TraesCS3D01G425300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G425300 chr3D 100.000 3385 0 0 1 3385 537559275 537555891 0.000000e+00 6252.0
1 TraesCS3D01G425300 chr3D 77.978 277 17 13 208 459 537680826 537680569 2.120000e-27 134.0
2 TraesCS3D01G425300 chr3B 91.167 3249 147 58 206 3385 711642486 711639309 0.000000e+00 4281.0
3 TraesCS3D01G425300 chr3B 89.898 1376 92 19 962 2332 711884880 711883547 0.000000e+00 1727.0
4 TraesCS3D01G425300 chr3B 82.555 407 21 19 14 394 711946464 711946082 2.540000e-81 313.0
5 TraesCS3D01G425300 chr3B 94.416 197 5 3 14 210 711644815 711644625 7.100000e-77 298.0
6 TraesCS3D01G425300 chr3B 81.844 347 28 13 203 526 712187662 712187328 3.350000e-65 259.0
7 TraesCS3D01G425300 chr3B 82.329 249 18 14 680 917 711885118 711884885 3.450000e-45 193.0
8 TraesCS3D01G425300 chr3B 92.857 56 4 0 592 647 712186051 712185996 7.780000e-12 82.4
9 TraesCS3D01G425300 chr3A 91.810 1978 112 31 944 2899 672870080 672868131 0.000000e+00 2710.0
10 TraesCS3D01G425300 chr3A 85.282 958 54 32 1 932 672870964 672870068 0.000000e+00 907.0
11 TraesCS3D01G425300 chr3A 91.710 193 12 3 3195 3385 672865677 672865487 7.200000e-67 265.0
12 TraesCS3D01G425300 chr3A 82.432 296 14 14 2896 3169 672867972 672867693 1.220000e-54 224.0
13 TraesCS3D01G425300 chr3A 93.243 74 5 0 193 266 673192431 673192358 3.570000e-20 110.0
14 TraesCS3D01G425300 chr2D 82.781 302 46 5 1634 1932 353350947 353351245 7.200000e-67 265.0
15 TraesCS3D01G425300 chr2A 82.781 302 46 5 1634 1932 471817111 471817409 7.200000e-67 265.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G425300 chr3D 537555891 537559275 3384 True 6252.0 6252 100.0000 1 3385 1 chr3D.!!$R1 3384
1 TraesCS3D01G425300 chr3B 711639309 711644815 5506 True 2289.5 4281 92.7915 14 3385 2 chr3B.!!$R2 3371
2 TraesCS3D01G425300 chr3B 711883547 711885118 1571 True 960.0 1727 86.1135 680 2332 2 chr3B.!!$R3 1652
3 TraesCS3D01G425300 chr3A 672865487 672870964 5477 True 1026.5 2710 87.8085 1 3385 4 chr3A.!!$R2 3384

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
376 2545 0.178995 CCGTACTCTACCCTCCTCCC 60.179 65.0 0.0 0.0 0.0 4.30 F
532 2708 0.373716 GGCGTCGTGAATGGATGAAC 59.626 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1381 3618 1.300971 CGAACACCATGTCCTGCTGG 61.301 60.0 2.58 2.58 38.55 4.85 R
2418 4659 0.239347 CAGTGCTGCTACTTGTTGCC 59.761 55.0 0.00 0.00 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 54 3.799281 TCCACAAGGAAAGCAAAACAG 57.201 42.857 0.00 0.00 42.23 3.16
45 55 3.360867 TCCACAAGGAAAGCAAAACAGA 58.639 40.909 0.00 0.00 42.23 3.41
46 56 3.381272 TCCACAAGGAAAGCAAAACAGAG 59.619 43.478 0.00 0.00 42.23 3.35
47 57 3.491447 CCACAAGGAAAGCAAAACAGAGG 60.491 47.826 0.00 0.00 36.89 3.69
48 58 3.381272 CACAAGGAAAGCAAAACAGAGGA 59.619 43.478 0.00 0.00 0.00 3.71
49 59 3.633986 ACAAGGAAAGCAAAACAGAGGAG 59.366 43.478 0.00 0.00 0.00 3.69
50 60 3.864789 AGGAAAGCAAAACAGAGGAGA 57.135 42.857 0.00 0.00 0.00 3.71
74 84 0.598158 TCCGTTCGAAGTTGGAACCG 60.598 55.000 20.83 15.88 40.46 4.44
75 85 0.598158 CCGTTCGAAGTTGGAACCGA 60.598 55.000 20.83 2.68 40.46 4.69
76 86 1.425412 CGTTCGAAGTTGGAACCGAT 58.575 50.000 20.83 0.00 40.46 4.18
313 2477 0.989890 CGTTCAACTTCGACCCGATC 59.010 55.000 0.00 0.00 35.23 3.69
376 2545 0.178995 CCGTACTCTACCCTCCTCCC 60.179 65.000 0.00 0.00 0.00 4.30
377 2546 0.845337 CGTACTCTACCCTCCTCCCT 59.155 60.000 0.00 0.00 0.00 4.20
438 2610 4.007940 CGCCACCGTTTGACCACG 62.008 66.667 0.00 0.00 40.02 4.94
526 2702 3.499737 GCCTGGCGTCGTGAATGG 61.500 66.667 1.35 0.00 0.00 3.16
532 2708 0.373716 GGCGTCGTGAATGGATGAAC 59.626 55.000 0.00 0.00 0.00 3.18
624 2804 0.740737 CAAAGATAAAGCCCAGCCCG 59.259 55.000 0.00 0.00 0.00 6.13
760 2948 3.636231 CCAGGACCCGGCTGACAA 61.636 66.667 8.95 0.00 0.00 3.18
793 3002 4.662961 CTCACGCAGGGTCACGCA 62.663 66.667 0.00 0.00 0.00 5.24
794 3003 4.961511 TCACGCAGGGTCACGCAC 62.962 66.667 0.00 0.00 0.00 5.34
882 3091 4.025647 CGCTTTTCCGAAACATCTATCTCC 60.026 45.833 0.00 0.00 0.00 3.71
883 3092 5.119694 GCTTTTCCGAAACATCTATCTCCT 58.880 41.667 0.00 0.00 0.00 3.69
884 3093 5.235401 GCTTTTCCGAAACATCTATCTCCTC 59.765 44.000 0.00 0.00 0.00 3.71
885 3094 6.546428 TTTTCCGAAACATCTATCTCCTCT 57.454 37.500 0.00 0.00 0.00 3.69
886 3095 5.776173 TTCCGAAACATCTATCTCCTCTC 57.224 43.478 0.00 0.00 0.00 3.20
887 3096 4.145807 TCCGAAACATCTATCTCCTCTCC 58.854 47.826 0.00 0.00 0.00 3.71
888 3097 4.141135 TCCGAAACATCTATCTCCTCTCCT 60.141 45.833 0.00 0.00 0.00 3.69
889 3098 4.217550 CCGAAACATCTATCTCCTCTCCTC 59.782 50.000 0.00 0.00 0.00 3.71
890 3099 5.070001 CGAAACATCTATCTCCTCTCCTCT 58.930 45.833 0.00 0.00 0.00 3.69
891 3100 5.181245 CGAAACATCTATCTCCTCTCCTCTC 59.819 48.000 0.00 0.00 0.00 3.20
925 3157 2.496817 CGCTTCTCCTTCTCCCCG 59.503 66.667 0.00 0.00 0.00 5.73
956 3188 4.179599 CCCCCTCCTCCCTCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
1081 3318 0.972983 CGGGCAGAAGAGGAAGAGGA 60.973 60.000 0.00 0.00 0.00 3.71
1283 3520 1.066454 CCCTTCGTGTTTGGTTCAACC 59.934 52.381 0.00 0.00 39.22 3.77
1341 3578 1.671845 GGTTGCCTGAACGTGTTTGTA 59.328 47.619 0.00 0.00 35.12 2.41
1357 3594 4.936411 TGTTTGTACCTTTGACGTTTCAGA 59.064 37.500 0.00 0.00 31.71 3.27
1501 3738 3.719214 GCCGGTAATCTTGAGGCG 58.281 61.111 1.90 0.00 38.28 5.52
1539 3776 2.555325 TGGTAAGAGTCGACGAACACAT 59.445 45.455 10.46 0.00 0.00 3.21
1540 3777 3.169733 GGTAAGAGTCGACGAACACATC 58.830 50.000 10.46 0.00 0.00 3.06
1543 3780 3.364889 AGAGTCGACGAACACATCAAA 57.635 42.857 10.46 0.00 0.00 2.69
1602 3839 1.915078 ATGGCCGGAGTTTCAGGGAG 61.915 60.000 5.05 0.00 32.07 4.30
1748 3985 1.635663 CCGTCATCCAGTTCAACGGC 61.636 60.000 0.00 0.00 45.32 5.68
1992 4229 3.634157 TTCGCCTCCCTCCCCATCA 62.634 63.158 0.00 0.00 0.00 3.07
2394 4635 4.335647 AGCAGTGACCGCCCCAAG 62.336 66.667 0.00 0.00 0.00 3.61
2436 4677 1.230635 CGGCAACAAGTAGCAGCACT 61.231 55.000 0.00 0.00 0.00 4.40
2441 4682 0.322975 ACAAGTAGCAGCACTGGAGG 59.677 55.000 0.00 0.00 0.00 4.30
2542 4785 0.173708 TTCTTTTTGCGGCCGTTTGT 59.826 45.000 28.70 0.00 0.00 2.83
2594 4837 2.175931 TCTACTAGGGAAGAGGAGCAGG 59.824 54.545 0.00 0.00 0.00 4.85
2616 4859 1.300233 GAGATTCTACCGCGGCCAG 60.300 63.158 28.58 22.87 0.00 4.85
2641 4888 6.073494 GCAGAACTCTAACCTTGTTTTCTCTC 60.073 42.308 0.00 0.00 0.00 3.20
2644 4891 8.268605 AGAACTCTAACCTTGTTTTCTCTCTTT 58.731 33.333 0.00 0.00 0.00 2.52
2646 4893 9.901172 AACTCTAACCTTGTTTTCTCTCTTTTA 57.099 29.630 0.00 0.00 0.00 1.52
2647 4894 9.901172 ACTCTAACCTTGTTTTCTCTCTTTTAA 57.099 29.630 0.00 0.00 0.00 1.52
2765 5029 1.664965 GCTCGAGCGTGGAAGTTGT 60.665 57.895 23.61 0.00 0.00 3.32
2846 5115 1.377594 TGCTCCGGCACTCTACGTA 60.378 57.895 0.00 0.00 44.28 3.57
2882 5151 1.300971 TACGCTACGTGCCTCTCGTT 61.301 55.000 0.00 0.00 41.39 3.85
2955 5400 2.406130 CGTCGTGTAGGCTTTGGTTTA 58.594 47.619 0.00 0.00 0.00 2.01
3012 5459 0.890996 GGCCTCTGGTGTTGGACTTG 60.891 60.000 0.00 0.00 0.00 3.16
3027 5474 1.224592 CTTGGGGAGGTGGAATCCG 59.775 63.158 0.00 0.00 37.75 4.18
3035 5482 0.617820 AGGTGGAATCCGTGTAGGCT 60.618 55.000 0.00 0.00 40.77 4.58
3077 5530 0.318955 CCAGCCGGCTTTTGTTCTTG 60.319 55.000 30.60 13.35 0.00 3.02
3087 5540 5.983118 CGGCTTTTGTTCTTGTTTCCTTTAT 59.017 36.000 0.00 0.00 0.00 1.40
3088 5541 6.478673 CGGCTTTTGTTCTTGTTTCCTTTATT 59.521 34.615 0.00 0.00 0.00 1.40
3089 5542 7.650104 CGGCTTTTGTTCTTGTTTCCTTTATTA 59.350 33.333 0.00 0.00 0.00 0.98
3108 5561 9.444600 CTTTATTACTTTTCTGTTACCTAGGCA 57.555 33.333 9.30 0.00 0.00 4.75
3109 5562 9.444600 TTTATTACTTTTCTGTTACCTAGGCAG 57.555 33.333 9.30 8.65 0.00 4.85
3152 5616 5.535783 TGGAAACAACACACAAGATGATGAT 59.464 36.000 0.00 0.00 37.44 2.45
3154 5618 4.430137 ACAACACACAAGATGATGATGC 57.570 40.909 0.00 0.00 0.00 3.91
3155 5619 3.192001 ACAACACACAAGATGATGATGCC 59.808 43.478 0.00 0.00 0.00 4.40
3156 5620 3.076079 ACACACAAGATGATGATGCCA 57.924 42.857 0.00 0.00 0.00 4.92
3157 5621 3.628008 ACACACAAGATGATGATGCCAT 58.372 40.909 0.00 0.00 35.29 4.40
3172 5646 1.286260 CCATCGCTACGACTAGCCC 59.714 63.158 0.00 0.00 42.36 5.19
3173 5648 1.452953 CCATCGCTACGACTAGCCCA 61.453 60.000 0.00 0.00 42.36 5.36
3175 5650 0.465824 ATCGCTACGACTAGCCCACT 60.466 55.000 0.00 0.00 42.36 4.00
3177 5652 1.734748 GCTACGACTAGCCCACTCC 59.265 63.158 0.00 0.00 39.79 3.85
3178 5653 2.023318 CTACGACTAGCCCACTCCG 58.977 63.158 0.00 0.00 0.00 4.63
3180 5655 0.322816 TACGACTAGCCCACTCCGTT 60.323 55.000 0.00 0.00 31.81 4.44
3182 5657 0.037605 CGACTAGCCCACTCCGTTTT 60.038 55.000 0.00 0.00 0.00 2.43
3248 7703 2.222596 GCACACGAGTAAATTCGCAGAG 60.223 50.000 0.00 0.00 44.15 3.35
3249 7704 3.242518 CACACGAGTAAATTCGCAGAGA 58.757 45.455 0.00 0.00 44.15 3.10
3285 7740 7.863375 AGTTCGATTTCTCTGGTATTCTATTCG 59.137 37.037 0.00 0.00 0.00 3.34
3307 7764 5.712217 GGAACGTATGAATCATTGAACGA 57.288 39.130 19.82 0.00 30.82 3.85
3371 7828 0.451783 CACCGTTAGGCTTTGGCATC 59.548 55.000 0.00 0.00 42.76 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 51 2.650322 GAACGGATCTCTCTCCTCTGT 58.350 52.381 0.00 0.00 32.77 3.41
42 52 1.601903 CGAACGGATCTCTCTCCTCTG 59.398 57.143 0.00 0.00 32.77 3.35
43 53 1.487142 TCGAACGGATCTCTCTCCTCT 59.513 52.381 0.00 0.00 32.77 3.69
44 54 1.956297 TCGAACGGATCTCTCTCCTC 58.044 55.000 0.00 0.00 32.77 3.71
45 55 2.294074 CTTCGAACGGATCTCTCTCCT 58.706 52.381 0.00 0.00 32.77 3.69
46 56 2.018515 ACTTCGAACGGATCTCTCTCC 58.981 52.381 0.00 0.00 0.00 3.71
47 57 3.430931 CAACTTCGAACGGATCTCTCTC 58.569 50.000 0.00 0.00 0.00 3.20
48 58 2.164624 CCAACTTCGAACGGATCTCTCT 59.835 50.000 0.00 0.00 0.00 3.10
49 59 2.163815 TCCAACTTCGAACGGATCTCTC 59.836 50.000 0.00 0.00 0.00 3.20
50 60 2.168496 TCCAACTTCGAACGGATCTCT 58.832 47.619 0.00 0.00 0.00 3.10
268 2432 4.335647 AAGGCACTCGGGGCTGTG 62.336 66.667 0.00 0.00 43.71 3.66
269 2433 4.021925 GAAGGCACTCGGGGCTGT 62.022 66.667 0.00 0.00 43.71 4.40
270 2434 4.020617 TGAAGGCACTCGGGGCTG 62.021 66.667 0.00 0.00 43.71 4.85
314 2478 1.392862 GGCGTGCGTTTATTGCGAAC 61.393 55.000 0.00 0.00 34.73 3.95
315 2479 1.154376 GGCGTGCGTTTATTGCGAA 60.154 52.632 0.00 0.00 34.24 4.70
316 2480 2.476947 GGCGTGCGTTTATTGCGA 59.523 55.556 0.00 0.00 34.24 5.10
317 2481 2.575789 GGGCGTGCGTTTATTGCG 60.576 61.111 0.00 0.00 34.24 4.85
376 2545 1.135859 ACCGTACGCGTTCTACTTCAG 60.136 52.381 20.78 1.31 36.15 3.02
377 2546 0.874390 ACCGTACGCGTTCTACTTCA 59.126 50.000 20.78 0.00 36.15 3.02
438 2610 7.923878 TCAGTTGGTAAATTTTTACTTGCTTCC 59.076 33.333 11.75 0.00 42.00 3.46
487 2663 1.525619 GTTTCCATCGCCATACGTAGC 59.474 52.381 0.08 0.00 44.19 3.58
526 2702 3.962481 GCATTATTGCTCGTTCGTTCATC 59.038 43.478 2.33 0.00 45.77 2.92
553 2733 1.133790 GCCATCTTTGCTGCGAGAAAT 59.866 47.619 9.17 0.00 0.00 2.17
795 3004 4.783734 GGTCCGTACCGTGCCGTC 62.784 72.222 0.00 0.00 35.62 4.79
860 3069 5.119694 AGGAGATAGATGTTTCGGAAAAGC 58.880 41.667 4.46 0.00 0.00 3.51
882 3091 1.133792 GGAGTGGAGAGGAGAGGAGAG 60.134 61.905 0.00 0.00 0.00 3.20
883 3092 0.923358 GGAGTGGAGAGGAGAGGAGA 59.077 60.000 0.00 0.00 0.00 3.71
884 3093 0.628522 TGGAGTGGAGAGGAGAGGAG 59.371 60.000 0.00 0.00 0.00 3.69
885 3094 0.333312 GTGGAGTGGAGAGGAGAGGA 59.667 60.000 0.00 0.00 0.00 3.71
886 3095 0.686112 GGTGGAGTGGAGAGGAGAGG 60.686 65.000 0.00 0.00 0.00 3.69
887 3096 0.040351 TGGTGGAGTGGAGAGGAGAG 59.960 60.000 0.00 0.00 0.00 3.20
888 3097 0.251832 GTGGTGGAGTGGAGAGGAGA 60.252 60.000 0.00 0.00 0.00 3.71
889 3098 1.261238 GGTGGTGGAGTGGAGAGGAG 61.261 65.000 0.00 0.00 0.00 3.69
890 3099 1.229209 GGTGGTGGAGTGGAGAGGA 60.229 63.158 0.00 0.00 0.00 3.71
891 3100 2.650116 CGGTGGTGGAGTGGAGAGG 61.650 68.421 0.00 0.00 0.00 3.69
939 3171 4.179599 GAGGGAGGGAGGAGGGGG 62.180 77.778 0.00 0.00 0.00 5.40
940 3172 4.179599 GGAGGGAGGGAGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
941 3173 4.548513 CGGAGGGAGGGAGGAGGG 62.549 77.778 0.00 0.00 0.00 4.30
987 3221 2.029470 CGTCCTCATCTTATCTCTGGCC 60.029 54.545 0.00 0.00 0.00 5.36
1341 3578 2.571212 TGCATCTGAAACGTCAAAGGT 58.429 42.857 0.00 0.00 31.88 3.50
1357 3594 2.042831 GCCGTTGAGCCTCTTGCAT 61.043 57.895 0.00 0.00 44.83 3.96
1381 3618 1.300971 CGAACACCATGTCCTGCTGG 61.301 60.000 2.58 2.58 38.55 4.85
1489 3726 3.819564 ATGTAGCACGCCTCAAGATTA 57.180 42.857 0.00 0.00 0.00 1.75
1501 3738 3.199880 ACCATGCCTAGAATGTAGCAC 57.800 47.619 0.00 0.00 38.21 4.40
1539 3776 5.501736 CGAACGATCAAGTCAACAAGTTTGA 60.502 40.000 0.00 0.00 34.42 2.69
1540 3777 4.666176 CGAACGATCAAGTCAACAAGTTTG 59.334 41.667 0.00 0.00 0.00 2.93
1543 3780 2.800544 CCGAACGATCAAGTCAACAAGT 59.199 45.455 0.00 0.00 0.00 3.16
2023 4260 3.678951 GAGAGGAGTGGGCTGCTGC 62.679 68.421 7.10 7.10 43.67 5.25
2408 4649 3.855209 CTTGTTGCCGGACGTTGCG 62.855 63.158 5.05 0.00 0.00 4.85
2415 4656 1.671054 GCTGCTACTTGTTGCCGGA 60.671 57.895 5.05 0.00 0.00 5.14
2416 4657 1.965930 TGCTGCTACTTGTTGCCGG 60.966 57.895 0.00 0.00 0.00 6.13
2417 4658 1.207593 GTGCTGCTACTTGTTGCCG 59.792 57.895 0.00 0.31 0.00 5.69
2418 4659 0.239347 CAGTGCTGCTACTTGTTGCC 59.761 55.000 0.00 0.00 0.00 4.52
2465 4706 2.572284 GTTCACTCCGCTACGCCT 59.428 61.111 0.00 0.00 0.00 5.52
2542 4785 3.608474 CGTACATCTGACAAGACGACACA 60.608 47.826 0.00 0.00 34.48 3.72
2594 4837 1.370657 CCGCGGTAGAATCTCTCGC 60.371 63.158 19.50 16.34 42.51 5.03
2616 4859 5.760743 AGAGAAAACAAGGTTAGAGTTCTGC 59.239 40.000 0.00 0.00 0.00 4.26
2714 4971 4.918201 CGAAGCGGGATCCAGGGC 62.918 72.222 15.23 13.55 0.00 5.19
2715 4972 2.731571 TTCGAAGCGGGATCCAGGG 61.732 63.158 15.23 3.03 0.00 4.45
2765 5029 3.057174 ACCAAAACACAAAGCGACAGAAA 60.057 39.130 0.00 0.00 0.00 2.52
2834 5099 1.741706 TGCTGTACTACGTAGAGTGCC 59.258 52.381 28.74 13.48 32.88 5.01
2882 5151 4.001652 CCTACTCATCCGATAAGCTACGA 58.998 47.826 8.96 0.00 0.00 3.43
2955 5400 4.742649 TCCCGTGCCTCGAGAGCT 62.743 66.667 15.71 0.00 42.86 4.09
2997 5442 0.696143 TCCCCAAGTCCAACACCAGA 60.696 55.000 0.00 0.00 0.00 3.86
3012 5459 0.979187 TACACGGATTCCACCTCCCC 60.979 60.000 3.09 0.00 0.00 4.81
3035 5482 1.406341 GGTGTCGCTTTGGCTATGGTA 60.406 52.381 0.00 0.00 36.09 3.25
3087 5540 5.280317 CCCTGCCTAGGTAACAGAAAAGTAA 60.280 44.000 11.31 0.00 42.96 2.24
3088 5541 4.224370 CCCTGCCTAGGTAACAGAAAAGTA 59.776 45.833 11.31 0.00 42.96 2.24
3089 5542 3.009143 CCCTGCCTAGGTAACAGAAAAGT 59.991 47.826 11.31 0.00 42.96 2.66
3108 5561 3.736224 CATGTCCTGCCCTGCCCT 61.736 66.667 0.00 0.00 0.00 5.19
3109 5562 4.828296 CCATGTCCTGCCCTGCCC 62.828 72.222 0.00 0.00 0.00 5.36
3110 5563 3.065787 ATCCATGTCCTGCCCTGCC 62.066 63.158 0.00 0.00 0.00 4.85
3111 5564 1.826921 CATCCATGTCCTGCCCTGC 60.827 63.158 0.00 0.00 0.00 4.85
3112 5565 1.152819 CCATCCATGTCCTGCCCTG 60.153 63.158 0.00 0.00 0.00 4.45
3113 5566 0.920763 TTCCATCCATGTCCTGCCCT 60.921 55.000 0.00 0.00 0.00 5.19
3114 5567 0.033208 TTTCCATCCATGTCCTGCCC 60.033 55.000 0.00 0.00 0.00 5.36
3115 5568 1.106285 GTTTCCATCCATGTCCTGCC 58.894 55.000 0.00 0.00 0.00 4.85
3116 5569 1.838112 TGTTTCCATCCATGTCCTGC 58.162 50.000 0.00 0.00 0.00 4.85
3117 5570 3.057315 GTGTTGTTTCCATCCATGTCCTG 60.057 47.826 0.00 0.00 0.00 3.86
3152 5616 1.359117 GCTAGTCGTAGCGATGGCA 59.641 57.895 1.50 0.00 42.41 4.92
3161 5625 0.322816 AACGGAGTGGGCTAGTCGTA 60.323 55.000 0.00 0.00 45.00 3.43
3180 5655 7.129622 CGTGCTCGAGCCATATAAAATAAAAA 58.870 34.615 33.23 6.90 41.18 1.94
3182 5657 5.333798 GCGTGCTCGAGCCATATAAAATAAA 60.334 40.000 33.23 8.07 41.18 1.40
3185 5660 2.480419 GCGTGCTCGAGCCATATAAAAT 59.520 45.455 33.23 0.00 41.18 1.82
3248 7703 7.184106 CAGAGAAATCGAACTGTACTCTACTC 58.816 42.308 0.00 0.00 33.00 2.59
3249 7704 6.094325 CCAGAGAAATCGAACTGTACTCTACT 59.906 42.308 0.00 0.00 33.00 2.57
3285 7740 5.712217 TCGTTCAATGATTCATACGTTCC 57.288 39.130 16.07 0.00 29.18 3.62
3307 7764 1.145377 AACAGGTTCGGCACTCGTT 59.855 52.632 0.00 0.00 40.32 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.