Multiple sequence alignment - TraesCS3D01G425200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G425200 chr3D 100.000 2264 0 0 1 2264 537328185 537325922 0.000000e+00 4181.0
1 TraesCS3D01G425200 chr3D 88.218 331 33 6 1929 2256 457067582 457067255 7.580000e-105 390.0
2 TraesCS3D01G425200 chr2D 99.027 1850 17 1 1 1850 36410721 36408873 0.000000e+00 3315.0
3 TraesCS3D01G425200 chr2D 92.412 1331 94 6 1 1325 52067209 52068538 0.000000e+00 1892.0
4 TraesCS3D01G425200 chr2D 97.445 587 10 3 1264 1850 87299046 87299627 0.000000e+00 996.0
5 TraesCS3D01G425200 chr2D 88.235 340 34 5 1929 2264 484044984 484044647 3.500000e-108 401.0
6 TraesCS3D01G425200 chr6D 98.593 1848 23 2 1 1846 58204935 58203089 0.000000e+00 3265.0
7 TraesCS3D01G425200 chr6D 98.741 1668 18 3 180 1847 453656126 453657790 0.000000e+00 2961.0
8 TraesCS3D01G425200 chr6D 96.875 32 0 1 1820 1851 453654926 453654896 4.000000e-03 52.8
9 TraesCS3D01G425200 chr6B 97.730 1850 38 4 1 1849 643442361 643440515 0.000000e+00 3181.0
10 TraesCS3D01G425200 chr5A 97.490 1833 25 3 1 1831 596089291 596087478 0.000000e+00 3110.0
11 TraesCS3D01G425200 chr5A 93.855 179 11 0 1669 1847 36286819 36286997 1.030000e-68 270.0
12 TraesCS3D01G425200 chr4A 92.928 1513 90 11 1 1499 91227530 91226021 0.000000e+00 2185.0
13 TraesCS3D01G425200 chr2A 92.110 1559 96 17 1 1545 615517898 615516353 0.000000e+00 2172.0
14 TraesCS3D01G425200 chr2A 87.647 340 34 7 1919 2256 8366140 8366473 2.730000e-104 388.0
15 TraesCS3D01G425200 chr2A 88.146 329 33 5 1929 2255 113933647 113933971 9.810000e-104 387.0
16 TraesCS3D01G425200 chr2B 90.813 1513 117 10 1 1499 529290606 529292110 0.000000e+00 2004.0
17 TraesCS3D01G425200 chr2B 89.728 331 29 5 1929 2256 12022225 12022553 3.480000e-113 418.0
18 TraesCS3D01G425200 chr7A 94.023 686 29 6 1161 1845 679858233 679858907 0.000000e+00 1029.0
19 TraesCS3D01G425200 chr7A 95.960 198 8 0 1653 1850 106687102 106687299 2.810000e-84 322.0
20 TraesCS3D01G425200 chr3A 89.381 339 29 7 1929 2264 267070027 267070361 9.670000e-114 420.0
21 TraesCS3D01G425200 chr3A 92.857 84 3 2 1846 1927 672620385 672620303 3.950000e-23 119.0
22 TraesCS3D01G425200 chr7D 88.037 326 37 2 1929 2252 500782603 500782928 3.530000e-103 385.0
23 TraesCS3D01G425200 chr7D 87.688 333 35 5 1935 2264 543722526 543722197 1.270000e-102 383.0
24 TraesCS3D01G425200 chr1A 87.688 333 36 5 1935 2264 176453070 176453400 1.270000e-102 383.0
25 TraesCS3D01G425200 chr3B 93.902 82 3 1 1847 1926 711048782 711048863 3.050000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G425200 chr3D 537325922 537328185 2263 True 4181 4181 100.000 1 2264 1 chr3D.!!$R2 2263
1 TraesCS3D01G425200 chr2D 36408873 36410721 1848 True 3315 3315 99.027 1 1850 1 chr2D.!!$R1 1849
2 TraesCS3D01G425200 chr2D 52067209 52068538 1329 False 1892 1892 92.412 1 1325 1 chr2D.!!$F1 1324
3 TraesCS3D01G425200 chr2D 87299046 87299627 581 False 996 996 97.445 1264 1850 1 chr2D.!!$F2 586
4 TraesCS3D01G425200 chr6D 58203089 58204935 1846 True 3265 3265 98.593 1 1846 1 chr6D.!!$R1 1845
5 TraesCS3D01G425200 chr6D 453656126 453657790 1664 False 2961 2961 98.741 180 1847 1 chr6D.!!$F1 1667
6 TraesCS3D01G425200 chr6B 643440515 643442361 1846 True 3181 3181 97.730 1 1849 1 chr6B.!!$R1 1848
7 TraesCS3D01G425200 chr5A 596087478 596089291 1813 True 3110 3110 97.490 1 1831 1 chr5A.!!$R1 1830
8 TraesCS3D01G425200 chr4A 91226021 91227530 1509 True 2185 2185 92.928 1 1499 1 chr4A.!!$R1 1498
9 TraesCS3D01G425200 chr2A 615516353 615517898 1545 True 2172 2172 92.110 1 1545 1 chr2A.!!$R1 1544
10 TraesCS3D01G425200 chr2B 529290606 529292110 1504 False 2004 2004 90.813 1 1499 1 chr2B.!!$F2 1498
11 TraesCS3D01G425200 chr7A 679858233 679858907 674 False 1029 1029 94.023 1161 1845 1 chr7A.!!$F2 684

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 981 5.501156 AGAACCTTTGGTGTATGGAAGATC 58.499 41.667 0.0 0.0 35.34 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2155 2199 0.034896 ACGTGTGGCGATTCCTTCTT 59.965 50.0 0.0 0.0 44.77 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
587 588 5.508825 GGGTGCAACAACTCAAAATGTGATA 60.509 40.000 3.06 0.00 39.98 2.15
978 981 5.501156 AGAACCTTTGGTGTATGGAAGATC 58.499 41.667 0.00 0.00 35.34 2.75
1446 1487 0.322098 TGCTCCATGTACCAAACGGG 60.322 55.000 0.00 0.00 44.81 5.28
1471 1512 5.587289 GATCTCTCTGTACATGTTCCTGTC 58.413 45.833 2.30 0.00 0.00 3.51
1789 1833 0.471780 TGGGTGAAGTGAGGAGCTCA 60.472 55.000 17.19 0.00 38.25 4.26
1850 1894 1.351350 GTTCCAGAACAGGCCCTAAGT 59.649 52.381 0.00 0.00 40.84 2.24
1851 1895 1.742308 TCCAGAACAGGCCCTAAGTT 58.258 50.000 0.00 0.00 0.00 2.66
1852 1896 1.628846 TCCAGAACAGGCCCTAAGTTC 59.371 52.381 16.03 16.03 41.37 3.01
1855 1899 2.861147 GAACAGGCCCTAAGTTCTGT 57.139 50.000 16.35 2.99 41.59 3.41
1856 1900 3.975168 GAACAGGCCCTAAGTTCTGTA 57.025 47.619 16.35 0.00 39.26 2.74
1857 1901 3.597255 GAACAGGCCCTAAGTTCTGTAC 58.403 50.000 16.35 0.00 39.26 2.90
1858 1902 2.903926 ACAGGCCCTAAGTTCTGTACT 58.096 47.619 0.00 0.00 38.52 2.73
1860 1904 3.261137 ACAGGCCCTAAGTTCTGTACTTC 59.739 47.826 0.00 0.00 43.67 3.01
1861 1905 3.515901 CAGGCCCTAAGTTCTGTACTTCT 59.484 47.826 0.00 0.00 43.67 2.85
1862 1906 3.515901 AGGCCCTAAGTTCTGTACTTCTG 59.484 47.826 0.00 0.00 43.67 3.02
1863 1907 3.261137 GGCCCTAAGTTCTGTACTTCTGT 59.739 47.826 2.80 0.00 43.67 3.41
1864 1908 4.496360 GCCCTAAGTTCTGTACTTCTGTC 58.504 47.826 2.80 0.00 43.67 3.51
1865 1909 4.734917 CCCTAAGTTCTGTACTTCTGTCG 58.265 47.826 2.80 0.00 43.67 4.35
1866 1910 4.167268 CCTAAGTTCTGTACTTCTGTCGC 58.833 47.826 2.80 0.00 43.67 5.19
1867 1911 3.728076 AAGTTCTGTACTTCTGTCGCA 57.272 42.857 0.00 0.00 43.67 5.10
1868 1912 3.944055 AGTTCTGTACTTCTGTCGCAT 57.056 42.857 0.00 0.00 31.29 4.73
1869 1913 3.579709 AGTTCTGTACTTCTGTCGCATG 58.420 45.455 0.00 0.00 31.29 4.06
1870 1914 1.996292 TCTGTACTTCTGTCGCATGC 58.004 50.000 7.91 7.91 0.00 4.06
1871 1915 1.272212 TCTGTACTTCTGTCGCATGCA 59.728 47.619 19.57 1.73 0.00 3.96
1872 1916 2.068519 CTGTACTTCTGTCGCATGCAA 58.931 47.619 19.57 0.00 0.00 4.08
1873 1917 2.068519 TGTACTTCTGTCGCATGCAAG 58.931 47.619 19.57 15.17 0.00 4.01
1874 1918 2.288763 TGTACTTCTGTCGCATGCAAGA 60.289 45.455 19.57 14.07 0.00 3.02
1875 1919 1.882912 ACTTCTGTCGCATGCAAGAA 58.117 45.000 19.57 19.98 0.00 2.52
1876 1920 1.802960 ACTTCTGTCGCATGCAAGAAG 59.197 47.619 32.57 32.57 38.78 2.85
1877 1921 0.518636 TTCTGTCGCATGCAAGAAGC 59.481 50.000 19.57 1.04 45.96 3.86
1894 1938 7.588512 GCAAGAAGCACAAATAGATAATAGGG 58.411 38.462 0.00 0.00 44.79 3.53
1895 1939 7.229506 GCAAGAAGCACAAATAGATAATAGGGT 59.770 37.037 0.00 0.00 44.79 4.34
1896 1940 9.125026 CAAGAAGCACAAATAGATAATAGGGTT 57.875 33.333 0.00 0.00 0.00 4.11
1897 1941 8.910351 AGAAGCACAAATAGATAATAGGGTTC 57.090 34.615 0.00 0.00 0.00 3.62
1898 1942 7.657761 AGAAGCACAAATAGATAATAGGGTTCG 59.342 37.037 0.00 0.00 35.92 3.95
1899 1943 7.062749 AGCACAAATAGATAATAGGGTTCGA 57.937 36.000 0.00 0.00 0.00 3.71
1900 1944 7.506114 AGCACAAATAGATAATAGGGTTCGAA 58.494 34.615 0.00 0.00 0.00 3.71
1901 1945 7.990886 AGCACAAATAGATAATAGGGTTCGAAA 59.009 33.333 0.00 0.00 0.00 3.46
1902 1946 8.283291 GCACAAATAGATAATAGGGTTCGAAAG 58.717 37.037 0.00 0.00 0.00 2.62
1903 1947 8.283291 CACAAATAGATAATAGGGTTCGAAAGC 58.717 37.037 0.00 0.00 0.00 3.51
1904 1948 7.990886 ACAAATAGATAATAGGGTTCGAAAGCA 59.009 33.333 0.00 0.00 0.00 3.91
1905 1949 8.836413 CAAATAGATAATAGGGTTCGAAAGCAA 58.164 33.333 0.00 0.00 0.00 3.91
1906 1950 7.964604 ATAGATAATAGGGTTCGAAAGCAAC 57.035 36.000 0.00 0.00 0.00 4.17
1907 1951 5.741011 AGATAATAGGGTTCGAAAGCAACA 58.259 37.500 0.00 0.00 0.00 3.33
1908 1952 6.357367 AGATAATAGGGTTCGAAAGCAACAT 58.643 36.000 0.00 0.00 0.00 2.71
1909 1953 4.701956 AATAGGGTTCGAAAGCAACATG 57.298 40.909 0.00 0.00 0.00 3.21
1910 1954 2.270352 AGGGTTCGAAAGCAACATGA 57.730 45.000 0.00 0.00 0.00 3.07
1911 1955 1.880027 AGGGTTCGAAAGCAACATGAC 59.120 47.619 0.00 0.00 0.00 3.06
1912 1956 1.606668 GGGTTCGAAAGCAACATGACA 59.393 47.619 0.00 0.00 0.00 3.58
1913 1957 2.228822 GGGTTCGAAAGCAACATGACAT 59.771 45.455 0.00 0.00 0.00 3.06
1914 1958 3.236816 GGTTCGAAAGCAACATGACATG 58.763 45.455 14.02 14.02 0.00 3.21
1915 1959 3.236816 GTTCGAAAGCAACATGACATGG 58.763 45.455 19.39 4.01 33.60 3.66
1916 1960 2.503331 TCGAAAGCAACATGACATGGT 58.497 42.857 19.39 10.56 33.60 3.55
1917 1961 2.483877 TCGAAAGCAACATGACATGGTC 59.516 45.455 19.39 7.47 33.60 4.02
1918 1962 2.226200 CGAAAGCAACATGACATGGTCA 59.774 45.455 19.39 1.05 46.90 4.02
1919 1963 3.304592 CGAAAGCAACATGACATGGTCAA 60.305 43.478 19.39 0.00 45.96 3.18
1920 1964 4.616604 CGAAAGCAACATGACATGGTCAAT 60.617 41.667 19.39 0.00 45.96 2.57
1921 1965 3.861276 AGCAACATGACATGGTCAATG 57.139 42.857 19.39 10.62 45.96 2.82
1922 1966 2.094390 AGCAACATGACATGGTCAATGC 60.094 45.455 19.39 18.13 45.96 3.56
1923 1967 2.094390 GCAACATGACATGGTCAATGCT 60.094 45.455 19.39 0.00 45.96 3.79
1924 1968 3.507786 CAACATGACATGGTCAATGCTG 58.492 45.455 19.39 0.14 45.96 4.41
1925 1969 1.475280 ACATGACATGGTCAATGCTGC 59.525 47.619 19.39 0.00 45.96 5.25
1926 1970 1.749063 CATGACATGGTCAATGCTGCT 59.251 47.619 7.60 0.00 45.96 4.24
1927 1971 1.170442 TGACATGGTCAATGCTGCTG 58.830 50.000 0.00 0.00 39.78 4.41
1928 1972 1.171308 GACATGGTCAATGCTGCTGT 58.829 50.000 0.00 0.00 40.22 4.40
1929 1973 1.542915 GACATGGTCAATGCTGCTGTT 59.457 47.619 0.00 0.00 40.22 3.16
1930 1974 1.965643 ACATGGTCAATGCTGCTGTTT 59.034 42.857 0.00 0.00 40.22 2.83
1931 1975 2.366266 ACATGGTCAATGCTGCTGTTTT 59.634 40.909 0.00 0.00 40.22 2.43
1932 1976 2.512485 TGGTCAATGCTGCTGTTTTG 57.488 45.000 0.00 0.40 0.00 2.44
1933 1977 1.068895 TGGTCAATGCTGCTGTTTTGG 59.931 47.619 0.00 0.00 0.00 3.28
1934 1978 1.340889 GGTCAATGCTGCTGTTTTGGA 59.659 47.619 0.00 0.00 0.00 3.53
1935 1979 2.224018 GGTCAATGCTGCTGTTTTGGAA 60.224 45.455 0.00 0.00 0.00 3.53
1936 1980 3.054878 GTCAATGCTGCTGTTTTGGAAG 58.945 45.455 0.00 0.00 0.00 3.46
1937 1981 2.036217 TCAATGCTGCTGTTTTGGAAGG 59.964 45.455 0.00 0.00 0.00 3.46
1938 1982 1.999648 ATGCTGCTGTTTTGGAAGGA 58.000 45.000 0.00 0.00 0.00 3.36
1939 1983 1.321474 TGCTGCTGTTTTGGAAGGAG 58.679 50.000 0.00 0.00 35.18 3.69
1940 1984 0.600057 GCTGCTGTTTTGGAAGGAGG 59.400 55.000 0.00 0.00 32.89 4.30
1941 1985 1.819305 GCTGCTGTTTTGGAAGGAGGA 60.819 52.381 0.00 0.00 32.89 3.71
1942 1986 2.800250 CTGCTGTTTTGGAAGGAGGAT 58.200 47.619 0.00 0.00 0.00 3.24
1943 1987 3.873801 GCTGCTGTTTTGGAAGGAGGATA 60.874 47.826 0.00 0.00 32.89 2.59
1944 1988 4.335416 CTGCTGTTTTGGAAGGAGGATAA 58.665 43.478 0.00 0.00 0.00 1.75
1945 1989 4.079253 TGCTGTTTTGGAAGGAGGATAAC 58.921 43.478 0.00 0.00 0.00 1.89
1946 1990 3.444034 GCTGTTTTGGAAGGAGGATAACC 59.556 47.826 0.00 0.00 0.00 2.85
1947 1991 4.662278 CTGTTTTGGAAGGAGGATAACCA 58.338 43.478 0.00 0.00 38.94 3.67
1948 1992 4.403734 TGTTTTGGAAGGAGGATAACCAC 58.596 43.478 0.00 0.00 38.94 4.16
1949 1993 3.343941 TTTGGAAGGAGGATAACCACG 57.656 47.619 0.00 0.00 38.94 4.94
1950 1994 1.200519 TGGAAGGAGGATAACCACGG 58.799 55.000 0.00 0.00 38.94 4.94
1951 1995 1.201424 GGAAGGAGGATAACCACGGT 58.799 55.000 0.00 0.00 38.94 4.83
1952 1996 1.138464 GGAAGGAGGATAACCACGGTC 59.862 57.143 0.00 0.00 38.94 4.79
1953 1997 2.108970 GAAGGAGGATAACCACGGTCT 58.891 52.381 0.00 0.00 38.94 3.85
1954 1998 1.777941 AGGAGGATAACCACGGTCTC 58.222 55.000 0.00 0.00 38.94 3.36
1955 1999 1.288335 AGGAGGATAACCACGGTCTCT 59.712 52.381 0.00 0.00 38.94 3.10
1956 2000 1.409427 GGAGGATAACCACGGTCTCTG 59.591 57.143 0.00 0.00 38.94 3.35
1957 2001 0.824759 AGGATAACCACGGTCTCTGC 59.175 55.000 0.00 0.00 38.94 4.26
1958 2002 0.535335 GGATAACCACGGTCTCTGCA 59.465 55.000 0.00 0.00 35.97 4.41
1959 2003 1.139058 GGATAACCACGGTCTCTGCAT 59.861 52.381 0.00 0.00 35.97 3.96
1960 2004 2.474816 GATAACCACGGTCTCTGCATC 58.525 52.381 0.00 0.00 0.00 3.91
1961 2005 1.262417 TAACCACGGTCTCTGCATCA 58.738 50.000 0.00 0.00 0.00 3.07
1962 2006 0.036952 AACCACGGTCTCTGCATCAG 60.037 55.000 0.00 0.00 0.00 2.90
1963 2007 1.153489 CCACGGTCTCTGCATCAGG 60.153 63.158 0.00 0.00 31.51 3.86
1964 2008 1.607801 CCACGGTCTCTGCATCAGGA 61.608 60.000 0.00 0.00 31.51 3.86
1965 2009 0.459237 CACGGTCTCTGCATCAGGAC 60.459 60.000 0.00 0.00 33.84 3.85
1966 2010 1.226802 CGGTCTCTGCATCAGGACG 60.227 63.158 0.00 0.00 34.70 4.79
1967 2011 1.893786 GGTCTCTGCATCAGGACGT 59.106 57.895 0.00 0.00 34.70 4.34
1968 2012 0.459237 GGTCTCTGCATCAGGACGTG 60.459 60.000 0.00 0.00 34.70 4.49
1969 2013 1.080995 GTCTCTGCATCAGGACGTGC 61.081 60.000 0.00 0.00 41.61 5.34
1972 2016 3.893572 TGCATCAGGACGTGCATG 58.106 55.556 10.52 3.82 45.60 4.06
1973 2017 2.400962 TGCATCAGGACGTGCATGC 61.401 57.895 20.73 20.73 45.60 4.06
1974 2018 2.400962 GCATCAGGACGTGCATGCA 61.401 57.895 22.02 18.46 40.94 3.96
1975 2019 1.719709 CATCAGGACGTGCATGCAG 59.280 57.895 23.41 17.33 0.00 4.41
1976 2020 2.110967 ATCAGGACGTGCATGCAGC 61.111 57.895 23.41 14.94 45.96 5.25
1977 2021 2.532465 ATCAGGACGTGCATGCAGCT 62.532 55.000 23.41 8.93 45.94 4.24
1978 2022 1.448365 CAGGACGTGCATGCAGCTA 60.448 57.895 23.41 0.00 45.94 3.32
1979 2023 0.812811 CAGGACGTGCATGCAGCTAT 60.813 55.000 23.41 6.63 45.94 2.97
1980 2024 0.752658 AGGACGTGCATGCAGCTATA 59.247 50.000 23.41 0.00 45.94 1.31
1981 2025 1.345741 AGGACGTGCATGCAGCTATAT 59.654 47.619 23.41 2.77 45.94 0.86
1982 2026 2.562738 AGGACGTGCATGCAGCTATATA 59.437 45.455 23.41 0.00 45.94 0.86
1983 2027 3.196469 AGGACGTGCATGCAGCTATATAT 59.804 43.478 23.41 0.00 45.94 0.86
1984 2028 3.935203 GGACGTGCATGCAGCTATATATT 59.065 43.478 23.41 0.00 45.94 1.28
1985 2029 5.105351 AGGACGTGCATGCAGCTATATATTA 60.105 40.000 23.41 0.00 45.94 0.98
1986 2030 5.755375 GGACGTGCATGCAGCTATATATTAT 59.245 40.000 23.41 0.00 45.94 1.28
1987 2031 6.258727 GGACGTGCATGCAGCTATATATTATT 59.741 38.462 23.41 0.00 45.94 1.40
1988 2032 7.438160 GGACGTGCATGCAGCTATATATTATTA 59.562 37.037 23.41 0.00 45.94 0.98
1989 2033 8.716646 ACGTGCATGCAGCTATATATTATTAA 57.283 30.769 23.41 0.00 45.94 1.40
1990 2034 9.161629 ACGTGCATGCAGCTATATATTATTAAA 57.838 29.630 23.41 0.00 45.94 1.52
1991 2035 9.986833 CGTGCATGCAGCTATATATTATTAAAA 57.013 29.630 23.41 0.00 45.94 1.52
2010 2054 5.741388 AAAAGAGTATAATTCAGCAGCCG 57.259 39.130 0.00 0.00 0.00 5.52
2011 2055 4.672587 AAGAGTATAATTCAGCAGCCGA 57.327 40.909 0.00 0.00 0.00 5.54
2012 2056 4.672587 AGAGTATAATTCAGCAGCCGAA 57.327 40.909 0.00 0.00 0.00 4.30
2013 2057 4.372656 AGAGTATAATTCAGCAGCCGAAC 58.627 43.478 0.00 0.00 0.00 3.95
2014 2058 4.119862 GAGTATAATTCAGCAGCCGAACA 58.880 43.478 0.00 0.00 0.00 3.18
2015 2059 3.871594 AGTATAATTCAGCAGCCGAACAC 59.128 43.478 0.00 0.00 0.00 3.32
2016 2060 1.448985 TAATTCAGCAGCCGAACACC 58.551 50.000 0.00 0.00 0.00 4.16
2017 2061 0.537143 AATTCAGCAGCCGAACACCA 60.537 50.000 0.00 0.00 0.00 4.17
2018 2062 0.322816 ATTCAGCAGCCGAACACCAT 60.323 50.000 0.00 0.00 0.00 3.55
2019 2063 0.537143 TTCAGCAGCCGAACACCATT 60.537 50.000 0.00 0.00 0.00 3.16
2020 2064 1.210931 CAGCAGCCGAACACCATTG 59.789 57.895 0.00 0.00 0.00 2.82
2021 2065 1.073025 AGCAGCCGAACACCATTGA 59.927 52.632 0.00 0.00 0.00 2.57
2022 2066 0.322816 AGCAGCCGAACACCATTGAT 60.323 50.000 0.00 0.00 0.00 2.57
2023 2067 0.099436 GCAGCCGAACACCATTGATC 59.901 55.000 0.00 0.00 0.00 2.92
2024 2068 0.734889 CAGCCGAACACCATTGATCC 59.265 55.000 0.00 0.00 0.00 3.36
2025 2069 0.744414 AGCCGAACACCATTGATCCG 60.744 55.000 0.00 0.00 0.00 4.18
2026 2070 1.714899 GCCGAACACCATTGATCCGG 61.715 60.000 0.00 0.00 0.00 5.14
2027 2071 0.107897 CCGAACACCATTGATCCGGA 60.108 55.000 6.61 6.61 0.00 5.14
2028 2072 1.677518 CCGAACACCATTGATCCGGAA 60.678 52.381 9.01 0.00 0.00 4.30
2029 2073 2.080693 CGAACACCATTGATCCGGAAA 58.919 47.619 9.01 0.00 0.00 3.13
2030 2074 2.486203 CGAACACCATTGATCCGGAAAA 59.514 45.455 9.01 6.85 0.00 2.29
2031 2075 3.057876 CGAACACCATTGATCCGGAAAAA 60.058 43.478 9.01 6.42 0.00 1.94
2053 2097 6.959671 AAACAAGCGAAAAACAAATCTTGA 57.040 29.167 6.77 0.00 35.97 3.02
2054 2098 6.573617 AACAAGCGAAAAACAAATCTTGAG 57.426 33.333 6.77 0.00 35.97 3.02
2055 2099 5.043248 ACAAGCGAAAAACAAATCTTGAGG 58.957 37.500 6.77 0.00 35.97 3.86
2056 2100 3.642705 AGCGAAAAACAAATCTTGAGGC 58.357 40.909 0.00 0.00 0.00 4.70
2057 2101 2.731451 GCGAAAAACAAATCTTGAGGCC 59.269 45.455 0.00 0.00 0.00 5.19
2058 2102 3.798548 GCGAAAAACAAATCTTGAGGCCA 60.799 43.478 5.01 0.00 0.00 5.36
2059 2103 4.559153 CGAAAAACAAATCTTGAGGCCAT 58.441 39.130 5.01 0.00 0.00 4.40
2060 2104 5.708948 CGAAAAACAAATCTTGAGGCCATA 58.291 37.500 5.01 0.00 0.00 2.74
2061 2105 6.332630 CGAAAAACAAATCTTGAGGCCATAT 58.667 36.000 5.01 0.00 0.00 1.78
2062 2106 7.479980 CGAAAAACAAATCTTGAGGCCATATA 58.520 34.615 5.01 0.00 0.00 0.86
2063 2107 7.432252 CGAAAAACAAATCTTGAGGCCATATAC 59.568 37.037 5.01 0.00 0.00 1.47
2064 2108 6.715347 AAACAAATCTTGAGGCCATATACC 57.285 37.500 5.01 0.00 0.00 2.73
2065 2109 5.653255 ACAAATCTTGAGGCCATATACCT 57.347 39.130 5.01 0.00 41.41 3.08
2072 2116 2.515854 GAGGCCATATACCTCGTGAGA 58.484 52.381 5.01 0.00 44.10 3.27
2083 2127 3.277962 TCGTGAGAGTAACTCCCCC 57.722 57.895 0.00 0.00 44.34 5.40
2084 2128 0.406750 TCGTGAGAGTAACTCCCCCA 59.593 55.000 0.00 0.00 44.34 4.96
2085 2129 0.818296 CGTGAGAGTAACTCCCCCAG 59.182 60.000 0.00 0.00 44.34 4.45
2086 2130 1.616187 CGTGAGAGTAACTCCCCCAGA 60.616 57.143 0.00 0.00 44.34 3.86
2087 2131 2.753247 GTGAGAGTAACTCCCCCAGAT 58.247 52.381 0.00 0.00 44.34 2.90
2088 2132 3.687551 CGTGAGAGTAACTCCCCCAGATA 60.688 52.174 0.00 0.00 44.34 1.98
2089 2133 4.287552 GTGAGAGTAACTCCCCCAGATAA 58.712 47.826 0.00 0.00 44.34 1.75
2090 2134 4.099727 GTGAGAGTAACTCCCCCAGATAAC 59.900 50.000 0.00 0.00 44.34 1.89
2091 2135 3.642377 GAGAGTAACTCCCCCAGATAACC 59.358 52.174 0.00 0.00 39.53 2.85
2092 2136 3.013648 AGAGTAACTCCCCCAGATAACCA 59.986 47.826 0.00 0.00 0.00 3.67
2093 2137 3.385115 AGTAACTCCCCCAGATAACCAG 58.615 50.000 0.00 0.00 0.00 4.00
2094 2138 2.361085 AACTCCCCCAGATAACCAGT 57.639 50.000 0.00 0.00 0.00 4.00
2095 2139 3.502051 AACTCCCCCAGATAACCAGTA 57.498 47.619 0.00 0.00 0.00 2.74
2096 2140 3.502051 ACTCCCCCAGATAACCAGTAA 57.498 47.619 0.00 0.00 0.00 2.24
2097 2141 3.113043 ACTCCCCCAGATAACCAGTAAC 58.887 50.000 0.00 0.00 0.00 2.50
2098 2142 2.438392 CTCCCCCAGATAACCAGTAACC 59.562 54.545 0.00 0.00 0.00 2.85
2099 2143 1.493446 CCCCCAGATAACCAGTAACCC 59.507 57.143 0.00 0.00 0.00 4.11
2100 2144 2.488836 CCCCAGATAACCAGTAACCCT 58.511 52.381 0.00 0.00 0.00 4.34
2101 2145 3.634215 CCCCCAGATAACCAGTAACCCTA 60.634 52.174 0.00 0.00 0.00 3.53
2102 2146 4.240323 CCCCAGATAACCAGTAACCCTAT 58.760 47.826 0.00 0.00 0.00 2.57
2103 2147 4.041691 CCCCAGATAACCAGTAACCCTATG 59.958 50.000 0.00 0.00 0.00 2.23
2104 2148 4.905456 CCCAGATAACCAGTAACCCTATGA 59.095 45.833 0.00 0.00 0.00 2.15
2105 2149 5.548056 CCCAGATAACCAGTAACCCTATGAT 59.452 44.000 0.00 0.00 0.00 2.45
2106 2150 6.729100 CCCAGATAACCAGTAACCCTATGATA 59.271 42.308 0.00 0.00 0.00 2.15
2107 2151 7.403231 CCCAGATAACCAGTAACCCTATGATAT 59.597 40.741 0.00 0.00 0.00 1.63
2108 2152 9.488762 CCAGATAACCAGTAACCCTATGATATA 57.511 37.037 0.00 0.00 0.00 0.86
2113 2157 8.792830 AACCAGTAACCCTATGATATAAGACA 57.207 34.615 0.00 0.00 0.00 3.41
2114 2158 8.191534 ACCAGTAACCCTATGATATAAGACAC 57.808 38.462 0.00 0.00 0.00 3.67
2115 2159 7.787904 ACCAGTAACCCTATGATATAAGACACA 59.212 37.037 0.00 0.00 0.00 3.72
2116 2160 8.647796 CCAGTAACCCTATGATATAAGACACAA 58.352 37.037 0.00 0.00 0.00 3.33
2117 2161 9.477484 CAGTAACCCTATGATATAAGACACAAC 57.523 37.037 0.00 0.00 0.00 3.32
2118 2162 9.209048 AGTAACCCTATGATATAAGACACAACA 57.791 33.333 0.00 0.00 0.00 3.33
2119 2163 9.998106 GTAACCCTATGATATAAGACACAACAT 57.002 33.333 0.00 0.00 0.00 2.71
2134 2178 8.776680 AGACACAACATAAACGAAAAATACAC 57.223 30.769 0.00 0.00 0.00 2.90
2135 2179 8.399425 AGACACAACATAAACGAAAAATACACA 58.601 29.630 0.00 0.00 0.00 3.72
2136 2180 8.912787 ACACAACATAAACGAAAAATACACAA 57.087 26.923 0.00 0.00 0.00 3.33
2137 2181 8.800031 ACACAACATAAACGAAAAATACACAAC 58.200 29.630 0.00 0.00 0.00 3.32
2138 2182 9.015577 CACAACATAAACGAAAAATACACAACT 57.984 29.630 0.00 0.00 0.00 3.16
2139 2183 9.228636 ACAACATAAACGAAAAATACACAACTC 57.771 29.630 0.00 0.00 0.00 3.01
2140 2184 8.687301 CAACATAAACGAAAAATACACAACTCC 58.313 33.333 0.00 0.00 0.00 3.85
2141 2185 8.161699 ACATAAACGAAAAATACACAACTCCT 57.838 30.769 0.00 0.00 0.00 3.69
2142 2186 9.275398 ACATAAACGAAAAATACACAACTCCTA 57.725 29.630 0.00 0.00 0.00 2.94
2143 2187 9.755064 CATAAACGAAAAATACACAACTCCTAG 57.245 33.333 0.00 0.00 0.00 3.02
2144 2188 6.796705 AACGAAAAATACACAACTCCTAGG 57.203 37.500 0.82 0.82 0.00 3.02
2145 2189 4.694037 ACGAAAAATACACAACTCCTAGGC 59.306 41.667 2.96 0.00 0.00 3.93
2146 2190 4.935808 CGAAAAATACACAACTCCTAGGCT 59.064 41.667 2.96 0.00 0.00 4.58
2147 2191 6.103997 CGAAAAATACACAACTCCTAGGCTA 58.896 40.000 2.96 0.00 0.00 3.93
2148 2192 6.035758 CGAAAAATACACAACTCCTAGGCTAC 59.964 42.308 2.96 0.00 0.00 3.58
2149 2193 5.354842 AAATACACAACTCCTAGGCTACC 57.645 43.478 2.96 0.00 0.00 3.18
2150 2194 1.569653 ACACAACTCCTAGGCTACCC 58.430 55.000 2.96 0.00 0.00 3.69
2151 2195 0.831307 CACAACTCCTAGGCTACCCC 59.169 60.000 2.96 0.00 0.00 4.95
2153 2197 1.080666 ACAACTCCTAGGCTACCCCTT 59.919 52.381 2.96 0.00 43.06 3.95
2154 2198 1.763545 CAACTCCTAGGCTACCCCTTC 59.236 57.143 2.96 0.00 43.06 3.46
2155 2199 1.016415 ACTCCTAGGCTACCCCTTCA 58.984 55.000 2.96 0.00 43.06 3.02
2156 2200 1.365028 ACTCCTAGGCTACCCCTTCAA 59.635 52.381 2.96 0.00 43.06 2.69
2157 2201 2.043227 CTCCTAGGCTACCCCTTCAAG 58.957 57.143 2.96 0.00 43.06 3.02
2158 2202 1.649633 TCCTAGGCTACCCCTTCAAGA 59.350 52.381 2.96 0.00 43.06 3.02
2159 2203 2.045326 TCCTAGGCTACCCCTTCAAGAA 59.955 50.000 2.96 0.00 43.06 2.52
2160 2204 2.436173 CCTAGGCTACCCCTTCAAGAAG 59.564 54.545 0.00 2.83 43.06 2.85
2171 2215 2.426522 CTTCAAGAAGGAATCGCCACA 58.573 47.619 1.86 0.00 40.02 4.17
2172 2216 1.808411 TCAAGAAGGAATCGCCACAC 58.192 50.000 0.00 0.00 40.02 3.82
2173 2217 0.443869 CAAGAAGGAATCGCCACACG 59.556 55.000 0.00 0.00 45.62 4.49
2174 2218 0.034896 AAGAAGGAATCGCCACACGT 59.965 50.000 0.00 0.00 44.19 4.49
2175 2219 0.670546 AGAAGGAATCGCCACACGTG 60.671 55.000 15.48 15.48 44.19 4.49
2176 2220 2.240612 GAAGGAATCGCCACACGTGC 62.241 60.000 17.22 0.00 44.19 5.34
2185 2229 3.188100 CACACGTGCGCCGATGAT 61.188 61.111 22.10 0.00 40.70 2.45
2186 2230 3.188100 ACACGTGCGCCGATGATG 61.188 61.111 22.10 13.17 40.70 3.07
2187 2231 3.928769 CACGTGCGCCGATGATGG 61.929 66.667 22.10 0.00 40.70 3.51
2188 2232 4.451150 ACGTGCGCCGATGATGGT 62.451 61.111 22.10 0.00 40.70 3.55
2189 2233 3.928769 CGTGCGCCGATGATGGTG 61.929 66.667 4.18 0.00 42.55 4.17
2190 2234 2.511373 GTGCGCCGATGATGGTGA 60.511 61.111 4.18 0.00 42.25 4.02
2191 2235 2.202919 TGCGCCGATGATGGTGAG 60.203 61.111 4.18 0.00 42.25 3.51
2192 2236 2.202932 GCGCCGATGATGGTGAGT 60.203 61.111 0.00 0.00 42.25 3.41
2193 2237 2.240500 GCGCCGATGATGGTGAGTC 61.241 63.158 0.00 0.00 42.25 3.36
2194 2238 1.592669 CGCCGATGATGGTGAGTCC 60.593 63.158 0.00 0.00 42.25 3.85
2208 2252 3.855255 TGAGTCCATCACAAGGTTGAA 57.145 42.857 0.00 0.00 31.12 2.69
2209 2253 3.476552 TGAGTCCATCACAAGGTTGAAC 58.523 45.455 0.00 0.00 31.12 3.18
2210 2254 3.136443 TGAGTCCATCACAAGGTTGAACT 59.864 43.478 0.00 0.00 31.12 3.01
2211 2255 4.137543 GAGTCCATCACAAGGTTGAACTT 58.862 43.478 0.00 0.00 0.00 2.66
2212 2256 4.137543 AGTCCATCACAAGGTTGAACTTC 58.862 43.478 0.00 0.00 0.00 3.01
2213 2257 3.058914 GTCCATCACAAGGTTGAACTTCG 60.059 47.826 0.00 0.00 0.00 3.79
2214 2258 2.226437 CCATCACAAGGTTGAACTTCGG 59.774 50.000 0.00 0.00 0.00 4.30
2215 2259 2.992124 TCACAAGGTTGAACTTCGGA 57.008 45.000 0.00 0.00 0.00 4.55
2216 2260 3.485463 TCACAAGGTTGAACTTCGGAT 57.515 42.857 0.00 0.00 0.00 4.18
2217 2261 3.815809 TCACAAGGTTGAACTTCGGATT 58.184 40.909 0.00 0.00 0.00 3.01
2218 2262 3.813166 TCACAAGGTTGAACTTCGGATTC 59.187 43.478 0.00 0.00 0.00 2.52
2219 2263 3.815401 CACAAGGTTGAACTTCGGATTCT 59.185 43.478 0.00 0.00 0.00 2.40
2220 2264 4.065789 ACAAGGTTGAACTTCGGATTCTC 58.934 43.478 0.00 0.00 0.00 2.87
2221 2265 4.065088 CAAGGTTGAACTTCGGATTCTCA 58.935 43.478 0.00 0.00 0.00 3.27
2222 2266 4.559862 AGGTTGAACTTCGGATTCTCAT 57.440 40.909 0.00 0.00 0.00 2.90
2223 2267 4.508662 AGGTTGAACTTCGGATTCTCATC 58.491 43.478 0.00 0.00 0.00 2.92
2224 2268 3.623510 GGTTGAACTTCGGATTCTCATCC 59.376 47.826 0.00 0.00 45.40 3.51
2225 2269 3.543680 TGAACTTCGGATTCTCATCCC 57.456 47.619 0.00 0.00 46.06 3.85
2226 2270 2.170607 TGAACTTCGGATTCTCATCCCC 59.829 50.000 0.00 0.00 46.06 4.81
2227 2271 1.879575 ACTTCGGATTCTCATCCCCA 58.120 50.000 0.00 0.00 46.06 4.96
2228 2272 2.196595 ACTTCGGATTCTCATCCCCAA 58.803 47.619 0.00 0.00 46.06 4.12
2229 2273 2.576191 ACTTCGGATTCTCATCCCCAAA 59.424 45.455 0.00 0.00 46.06 3.28
2230 2274 3.209410 CTTCGGATTCTCATCCCCAAAG 58.791 50.000 0.00 0.00 46.06 2.77
2231 2275 1.134098 TCGGATTCTCATCCCCAAAGC 60.134 52.381 0.00 0.00 46.06 3.51
2232 2276 1.408683 CGGATTCTCATCCCCAAAGCA 60.409 52.381 0.00 0.00 46.06 3.91
2233 2277 2.738743 GGATTCTCATCCCCAAAGCAA 58.261 47.619 0.00 0.00 43.29 3.91
2234 2278 3.099141 GGATTCTCATCCCCAAAGCAAA 58.901 45.455 0.00 0.00 43.29 3.68
2235 2279 3.131755 GGATTCTCATCCCCAAAGCAAAG 59.868 47.826 0.00 0.00 43.29 2.77
2236 2280 2.978156 TCTCATCCCCAAAGCAAAGT 57.022 45.000 0.00 0.00 0.00 2.66
2237 2281 3.243359 TCTCATCCCCAAAGCAAAGTT 57.757 42.857 0.00 0.00 0.00 2.66
2238 2282 3.575805 TCTCATCCCCAAAGCAAAGTTT 58.424 40.909 0.00 0.00 0.00 2.66
2239 2283 3.573967 TCTCATCCCCAAAGCAAAGTTTC 59.426 43.478 0.00 0.00 0.00 2.78
2240 2284 3.303938 TCATCCCCAAAGCAAAGTTTCA 58.696 40.909 0.00 0.00 0.00 2.69
2241 2285 3.321682 TCATCCCCAAAGCAAAGTTTCAG 59.678 43.478 0.00 0.00 0.00 3.02
2242 2286 2.745968 TCCCCAAAGCAAAGTTTCAGT 58.254 42.857 0.00 0.00 0.00 3.41
2243 2287 2.693074 TCCCCAAAGCAAAGTTTCAGTC 59.307 45.455 0.00 0.00 0.00 3.51
2244 2288 2.224042 CCCCAAAGCAAAGTTTCAGTCC 60.224 50.000 0.00 0.00 0.00 3.85
2245 2289 2.430332 CCCAAAGCAAAGTTTCAGTCCA 59.570 45.455 0.00 0.00 0.00 4.02
2246 2290 3.447742 CCAAAGCAAAGTTTCAGTCCAC 58.552 45.455 0.00 0.00 0.00 4.02
2247 2291 3.447742 CAAAGCAAAGTTTCAGTCCACC 58.552 45.455 0.00 0.00 0.00 4.61
2248 2292 2.435372 AGCAAAGTTTCAGTCCACCA 57.565 45.000 0.00 0.00 0.00 4.17
2249 2293 2.024414 AGCAAAGTTTCAGTCCACCAC 58.976 47.619 0.00 0.00 0.00 4.16
2250 2294 1.067060 GCAAAGTTTCAGTCCACCACC 59.933 52.381 0.00 0.00 0.00 4.61
2251 2295 2.654863 CAAAGTTTCAGTCCACCACCT 58.345 47.619 0.00 0.00 0.00 4.00
2252 2296 3.023832 CAAAGTTTCAGTCCACCACCTT 58.976 45.455 0.00 0.00 0.00 3.50
2253 2297 2.640316 AGTTTCAGTCCACCACCTTC 57.360 50.000 0.00 0.00 0.00 3.46
2254 2298 1.843851 AGTTTCAGTCCACCACCTTCA 59.156 47.619 0.00 0.00 0.00 3.02
2255 2299 2.158755 AGTTTCAGTCCACCACCTTCAG 60.159 50.000 0.00 0.00 0.00 3.02
2256 2300 1.507140 TTCAGTCCACCACCTTCAGT 58.493 50.000 0.00 0.00 0.00 3.41
2257 2301 0.758734 TCAGTCCACCACCTTCAGTG 59.241 55.000 0.00 0.00 46.83 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
587 588 3.496130 GCATATCAAAGTCGCATACTGCT 59.504 43.478 0.00 0.00 42.25 4.24
1102 1105 1.381872 CCGGATCCCTCTCACACCT 60.382 63.158 6.06 0.00 0.00 4.00
1446 1487 3.067461 AGGAACATGTACAGAGAGATCGC 59.933 47.826 0.00 0.00 0.00 4.58
1727 1771 2.172483 GACGCTGGCTTCTCCCTTCA 62.172 60.000 0.00 0.00 0.00 3.02
1789 1833 2.613977 CCACGATTTCAGCTTCTGGAGT 60.614 50.000 0.00 0.00 31.51 3.85
1850 1894 2.288763 TGCATGCGACAGAAGTACAGAA 60.289 45.455 14.09 0.00 0.00 3.02
1851 1895 1.272212 TGCATGCGACAGAAGTACAGA 59.728 47.619 14.09 0.00 0.00 3.41
1852 1896 1.713597 TGCATGCGACAGAAGTACAG 58.286 50.000 14.09 0.00 0.00 2.74
1853 1897 2.068519 CTTGCATGCGACAGAAGTACA 58.931 47.619 14.09 0.00 0.00 2.90
1854 1898 2.337583 TCTTGCATGCGACAGAAGTAC 58.662 47.619 14.09 0.00 0.00 2.73
1855 1899 2.741759 TCTTGCATGCGACAGAAGTA 57.258 45.000 14.09 0.00 0.00 2.24
1856 1900 1.802960 CTTCTTGCATGCGACAGAAGT 59.197 47.619 29.09 0.00 0.00 3.01
1857 1901 1.465354 GCTTCTTGCATGCGACAGAAG 60.465 52.381 31.15 31.15 42.31 2.85
1858 1902 0.518636 GCTTCTTGCATGCGACAGAA 59.481 50.000 19.89 19.89 42.31 3.02
1859 1903 2.165380 GCTTCTTGCATGCGACAGA 58.835 52.632 14.09 11.38 42.31 3.41
1860 1904 4.759564 GCTTCTTGCATGCGACAG 57.240 55.556 14.09 9.06 42.31 3.51
1869 1913 7.229506 ACCCTATTATCTATTTGTGCTTCTTGC 59.770 37.037 0.00 0.00 43.25 4.01
1870 1914 8.682936 ACCCTATTATCTATTTGTGCTTCTTG 57.317 34.615 0.00 0.00 0.00 3.02
1871 1915 9.343539 GAACCCTATTATCTATTTGTGCTTCTT 57.656 33.333 0.00 0.00 0.00 2.52
1872 1916 7.657761 CGAACCCTATTATCTATTTGTGCTTCT 59.342 37.037 0.00 0.00 0.00 2.85
1873 1917 7.656137 TCGAACCCTATTATCTATTTGTGCTTC 59.344 37.037 0.00 0.00 0.00 3.86
1874 1918 7.506114 TCGAACCCTATTATCTATTTGTGCTT 58.494 34.615 0.00 0.00 0.00 3.91
1875 1919 7.062749 TCGAACCCTATTATCTATTTGTGCT 57.937 36.000 0.00 0.00 0.00 4.40
1876 1920 7.724305 TTCGAACCCTATTATCTATTTGTGC 57.276 36.000 0.00 0.00 0.00 4.57
1877 1921 8.283291 GCTTTCGAACCCTATTATCTATTTGTG 58.717 37.037 0.00 0.00 0.00 3.33
1878 1922 7.990886 TGCTTTCGAACCCTATTATCTATTTGT 59.009 33.333 0.00 0.00 0.00 2.83
1879 1923 8.378172 TGCTTTCGAACCCTATTATCTATTTG 57.622 34.615 0.00 0.00 0.00 2.32
1880 1924 8.837389 GTTGCTTTCGAACCCTATTATCTATTT 58.163 33.333 0.00 0.00 0.00 1.40
1881 1925 7.990886 TGTTGCTTTCGAACCCTATTATCTATT 59.009 33.333 0.00 0.00 0.00 1.73
1882 1926 7.506114 TGTTGCTTTCGAACCCTATTATCTAT 58.494 34.615 0.00 0.00 0.00 1.98
1883 1927 6.880484 TGTTGCTTTCGAACCCTATTATCTA 58.120 36.000 0.00 0.00 0.00 1.98
1884 1928 5.741011 TGTTGCTTTCGAACCCTATTATCT 58.259 37.500 0.00 0.00 0.00 1.98
1885 1929 6.260050 TCATGTTGCTTTCGAACCCTATTATC 59.740 38.462 0.00 0.00 0.00 1.75
1886 1930 6.038271 GTCATGTTGCTTTCGAACCCTATTAT 59.962 38.462 0.00 0.00 0.00 1.28
1887 1931 5.353123 GTCATGTTGCTTTCGAACCCTATTA 59.647 40.000 0.00 0.00 0.00 0.98
1888 1932 4.156008 GTCATGTTGCTTTCGAACCCTATT 59.844 41.667 0.00 0.00 0.00 1.73
1889 1933 3.689649 GTCATGTTGCTTTCGAACCCTAT 59.310 43.478 0.00 0.00 0.00 2.57
1890 1934 3.071479 GTCATGTTGCTTTCGAACCCTA 58.929 45.455 0.00 0.00 0.00 3.53
1891 1935 1.880027 GTCATGTTGCTTTCGAACCCT 59.120 47.619 0.00 0.00 0.00 4.34
1892 1936 1.606668 TGTCATGTTGCTTTCGAACCC 59.393 47.619 0.00 0.00 0.00 4.11
1893 1937 3.236816 CATGTCATGTTGCTTTCGAACC 58.763 45.455 0.00 0.00 0.00 3.62
1894 1938 3.236816 CCATGTCATGTTGCTTTCGAAC 58.763 45.455 11.84 0.00 0.00 3.95
1895 1939 2.884012 ACCATGTCATGTTGCTTTCGAA 59.116 40.909 11.84 0.00 0.00 3.71
1896 1940 2.483877 GACCATGTCATGTTGCTTTCGA 59.516 45.455 11.84 0.00 32.09 3.71
1897 1941 2.226200 TGACCATGTCATGTTGCTTTCG 59.774 45.455 11.84 0.00 37.67 3.46
1898 1942 3.921119 TGACCATGTCATGTTGCTTTC 57.079 42.857 11.84 0.00 37.67 2.62
1899 1943 4.562082 CATTGACCATGTCATGTTGCTTT 58.438 39.130 11.84 0.00 42.40 3.51
1900 1944 3.615592 GCATTGACCATGTCATGTTGCTT 60.616 43.478 11.84 0.00 42.40 3.91
1901 1945 2.094390 GCATTGACCATGTCATGTTGCT 60.094 45.455 11.84 0.00 42.40 3.91
1902 1946 2.094390 AGCATTGACCATGTCATGTTGC 60.094 45.455 11.84 11.40 42.40 4.17
1903 1947 3.507786 CAGCATTGACCATGTCATGTTG 58.492 45.455 11.84 0.12 42.40 3.33
1904 1948 2.094390 GCAGCATTGACCATGTCATGTT 60.094 45.455 11.84 0.00 42.40 2.71
1905 1949 1.475280 GCAGCATTGACCATGTCATGT 59.525 47.619 11.84 0.25 42.40 3.21
1906 1950 1.749063 AGCAGCATTGACCATGTCATG 59.251 47.619 5.79 5.79 42.40 3.07
1907 1951 1.749063 CAGCAGCATTGACCATGTCAT 59.251 47.619 0.00 0.00 42.40 3.06
1908 1952 1.170442 CAGCAGCATTGACCATGTCA 58.830 50.000 0.00 0.00 41.09 3.58
1909 1953 1.171308 ACAGCAGCATTGACCATGTC 58.829 50.000 0.00 0.00 34.98 3.06
1910 1954 1.624336 AACAGCAGCATTGACCATGT 58.376 45.000 0.00 0.00 34.98 3.21
1911 1955 2.734606 CAAAACAGCAGCATTGACCATG 59.265 45.455 0.00 0.00 35.73 3.66
1912 1956 2.289195 CCAAAACAGCAGCATTGACCAT 60.289 45.455 0.00 0.00 0.00 3.55
1913 1957 1.068895 CCAAAACAGCAGCATTGACCA 59.931 47.619 0.00 0.00 0.00 4.02
1914 1958 1.340889 TCCAAAACAGCAGCATTGACC 59.659 47.619 0.00 0.00 0.00 4.02
1915 1959 2.798976 TCCAAAACAGCAGCATTGAC 57.201 45.000 0.00 0.00 0.00 3.18
1916 1960 2.036217 CCTTCCAAAACAGCAGCATTGA 59.964 45.455 0.00 0.00 0.00 2.57
1917 1961 2.036217 TCCTTCCAAAACAGCAGCATTG 59.964 45.455 0.00 0.00 0.00 2.82
1918 1962 2.298163 CTCCTTCCAAAACAGCAGCATT 59.702 45.455 0.00 0.00 0.00 3.56
1919 1963 1.891150 CTCCTTCCAAAACAGCAGCAT 59.109 47.619 0.00 0.00 0.00 3.79
1920 1964 1.321474 CTCCTTCCAAAACAGCAGCA 58.679 50.000 0.00 0.00 0.00 4.41
1921 1965 0.600057 CCTCCTTCCAAAACAGCAGC 59.400 55.000 0.00 0.00 0.00 5.25
1922 1966 2.276732 TCCTCCTTCCAAAACAGCAG 57.723 50.000 0.00 0.00 0.00 4.24
1923 1967 2.978156 ATCCTCCTTCCAAAACAGCA 57.022 45.000 0.00 0.00 0.00 4.41
1924 1968 3.444034 GGTTATCCTCCTTCCAAAACAGC 59.556 47.826 0.00 0.00 0.00 4.40
1925 1969 4.459337 GTGGTTATCCTCCTTCCAAAACAG 59.541 45.833 0.00 0.00 34.23 3.16
1926 1970 4.403734 GTGGTTATCCTCCTTCCAAAACA 58.596 43.478 0.00 0.00 34.23 2.83
1927 1971 3.439129 CGTGGTTATCCTCCTTCCAAAAC 59.561 47.826 0.00 0.00 34.23 2.43
1928 1972 3.560453 CCGTGGTTATCCTCCTTCCAAAA 60.560 47.826 0.00 0.00 34.23 2.44
1929 1973 2.026636 CCGTGGTTATCCTCCTTCCAAA 60.027 50.000 0.00 0.00 34.23 3.28
1930 1974 1.557832 CCGTGGTTATCCTCCTTCCAA 59.442 52.381 0.00 0.00 34.23 3.53
1931 1975 1.200519 CCGTGGTTATCCTCCTTCCA 58.799 55.000 0.00 0.00 34.23 3.53
1932 1976 1.138464 GACCGTGGTTATCCTCCTTCC 59.862 57.143 0.00 0.00 34.23 3.46
1933 1977 2.101082 GAGACCGTGGTTATCCTCCTTC 59.899 54.545 0.00 0.00 34.23 3.46
1934 1978 2.108970 GAGACCGTGGTTATCCTCCTT 58.891 52.381 0.00 0.00 34.23 3.36
1935 1979 1.288335 AGAGACCGTGGTTATCCTCCT 59.712 52.381 0.00 0.00 34.23 3.69
1936 1980 1.409427 CAGAGACCGTGGTTATCCTCC 59.591 57.143 0.00 0.00 34.23 4.30
1937 1981 1.202428 GCAGAGACCGTGGTTATCCTC 60.202 57.143 0.00 0.00 34.23 3.71
1938 1982 0.824759 GCAGAGACCGTGGTTATCCT 59.175 55.000 0.00 0.00 34.23 3.24
1939 1983 0.535335 TGCAGAGACCGTGGTTATCC 59.465 55.000 0.00 0.00 0.00 2.59
1940 1984 2.159099 TGATGCAGAGACCGTGGTTATC 60.159 50.000 0.00 0.00 0.00 1.75
1941 1985 1.831106 TGATGCAGAGACCGTGGTTAT 59.169 47.619 0.00 0.00 0.00 1.89
1942 1986 1.204704 CTGATGCAGAGACCGTGGTTA 59.795 52.381 0.00 0.00 32.44 2.85
1943 1987 0.036952 CTGATGCAGAGACCGTGGTT 60.037 55.000 0.00 0.00 32.44 3.67
1944 1988 1.593787 CTGATGCAGAGACCGTGGT 59.406 57.895 0.00 0.00 32.44 4.16
1945 1989 1.153489 CCTGATGCAGAGACCGTGG 60.153 63.158 0.00 0.00 32.44 4.94
1946 1990 0.459237 GTCCTGATGCAGAGACCGTG 60.459 60.000 0.00 0.00 32.44 4.94
1947 1991 1.893786 GTCCTGATGCAGAGACCGT 59.106 57.895 0.00 0.00 32.44 4.83
1948 1992 1.226802 CGTCCTGATGCAGAGACCG 60.227 63.158 0.00 0.00 32.25 4.79
1949 1993 0.459237 CACGTCCTGATGCAGAGACC 60.459 60.000 0.00 0.00 32.25 3.85
1950 1994 1.080995 GCACGTCCTGATGCAGAGAC 61.081 60.000 0.00 0.00 41.65 3.36
1951 1995 1.216444 GCACGTCCTGATGCAGAGA 59.784 57.895 0.00 0.00 41.65 3.10
1952 1996 1.079612 TGCACGTCCTGATGCAGAG 60.080 57.895 0.00 0.00 46.63 3.35
1953 1997 3.059099 TGCACGTCCTGATGCAGA 58.941 55.556 0.00 0.00 46.63 4.26
1956 2000 2.319011 CTGCATGCACGTCCTGATGC 62.319 60.000 18.46 9.55 41.34 3.91
1957 2001 1.719709 CTGCATGCACGTCCTGATG 59.280 57.895 18.46 0.00 0.00 3.07
1958 2002 2.110967 GCTGCATGCACGTCCTGAT 61.111 57.895 18.46 0.00 42.31 2.90
1959 2003 1.887344 TAGCTGCATGCACGTCCTGA 61.887 55.000 18.46 0.00 45.94 3.86
1960 2004 0.812811 ATAGCTGCATGCACGTCCTG 60.813 55.000 18.46 7.18 45.94 3.86
1961 2005 0.752658 TATAGCTGCATGCACGTCCT 59.247 50.000 18.46 12.79 45.94 3.85
1962 2006 1.800805 ATATAGCTGCATGCACGTCC 58.199 50.000 18.46 5.54 45.94 4.79
1963 2007 6.834959 ATAATATATAGCTGCATGCACGTC 57.165 37.500 18.46 8.99 45.94 4.34
1964 2008 8.716646 TTAATAATATATAGCTGCATGCACGT 57.283 30.769 18.46 9.38 45.94 4.49
1965 2009 9.986833 TTTTAATAATATATAGCTGCATGCACG 57.013 29.630 18.46 14.14 45.94 5.34
1984 2028 8.988934 CGGCTGCTGAATTATACTCTTTTAATA 58.011 33.333 1.17 0.00 0.00 0.98
1985 2029 7.715249 TCGGCTGCTGAATTATACTCTTTTAAT 59.285 33.333 9.09 0.00 0.00 1.40
1986 2030 7.045416 TCGGCTGCTGAATTATACTCTTTTAA 58.955 34.615 9.09 0.00 0.00 1.52
1987 2031 6.578944 TCGGCTGCTGAATTATACTCTTTTA 58.421 36.000 9.09 0.00 0.00 1.52
1988 2032 5.428253 TCGGCTGCTGAATTATACTCTTTT 58.572 37.500 9.09 0.00 0.00 2.27
1989 2033 5.023533 TCGGCTGCTGAATTATACTCTTT 57.976 39.130 9.09 0.00 0.00 2.52
1990 2034 4.672587 TCGGCTGCTGAATTATACTCTT 57.327 40.909 9.09 0.00 0.00 2.85
1991 2035 4.141937 TGTTCGGCTGCTGAATTATACTCT 60.142 41.667 25.18 0.00 31.07 3.24
1992 2036 4.025647 GTGTTCGGCTGCTGAATTATACTC 60.026 45.833 25.18 12.01 31.07 2.59
1993 2037 3.871594 GTGTTCGGCTGCTGAATTATACT 59.128 43.478 25.18 0.00 31.07 2.12
1994 2038 3.002348 GGTGTTCGGCTGCTGAATTATAC 59.998 47.826 25.18 19.61 31.07 1.47
1995 2039 3.202906 GGTGTTCGGCTGCTGAATTATA 58.797 45.455 25.18 10.82 31.07 0.98
1996 2040 2.017049 GGTGTTCGGCTGCTGAATTAT 58.983 47.619 25.18 0.00 31.07 1.28
1997 2041 1.271108 TGGTGTTCGGCTGCTGAATTA 60.271 47.619 25.18 15.34 31.07 1.40
1998 2042 0.537143 TGGTGTTCGGCTGCTGAATT 60.537 50.000 25.18 0.00 31.07 2.17
1999 2043 0.322816 ATGGTGTTCGGCTGCTGAAT 60.323 50.000 25.18 7.75 31.07 2.57
2000 2044 0.537143 AATGGTGTTCGGCTGCTGAA 60.537 50.000 19.45 19.45 0.00 3.02
2001 2045 1.073025 AATGGTGTTCGGCTGCTGA 59.927 52.632 7.16 7.16 0.00 4.26
2002 2046 1.210931 CAATGGTGTTCGGCTGCTG 59.789 57.895 0.95 0.95 0.00 4.41
2003 2047 0.322816 ATCAATGGTGTTCGGCTGCT 60.323 50.000 0.00 0.00 0.00 4.24
2004 2048 0.099436 GATCAATGGTGTTCGGCTGC 59.901 55.000 0.00 0.00 0.00 5.25
2005 2049 0.734889 GGATCAATGGTGTTCGGCTG 59.265 55.000 0.00 0.00 0.00 4.85
2006 2050 0.744414 CGGATCAATGGTGTTCGGCT 60.744 55.000 0.00 0.00 0.00 5.52
2007 2051 1.714899 CCGGATCAATGGTGTTCGGC 61.715 60.000 0.00 0.00 0.00 5.54
2008 2052 0.107897 TCCGGATCAATGGTGTTCGG 60.108 55.000 0.00 0.00 35.55 4.30
2009 2053 1.732941 TTCCGGATCAATGGTGTTCG 58.267 50.000 4.15 0.00 0.00 3.95
2010 2054 4.513198 TTTTTCCGGATCAATGGTGTTC 57.487 40.909 4.15 0.00 0.00 3.18
2028 2072 7.801752 TCAAGATTTGTTTTTCGCTTGTTTTT 58.198 26.923 0.00 0.00 35.49 1.94
2029 2073 7.357951 TCAAGATTTGTTTTTCGCTTGTTTT 57.642 28.000 0.00 0.00 35.49 2.43
2030 2074 6.035975 CCTCAAGATTTGTTTTTCGCTTGTTT 59.964 34.615 0.00 0.00 35.49 2.83
2031 2075 5.519927 CCTCAAGATTTGTTTTTCGCTTGTT 59.480 36.000 0.00 0.00 35.49 2.83
2032 2076 5.043248 CCTCAAGATTTGTTTTTCGCTTGT 58.957 37.500 0.00 0.00 35.49 3.16
2033 2077 4.084900 GCCTCAAGATTTGTTTTTCGCTTG 60.085 41.667 0.00 0.00 35.34 4.01
2034 2078 4.051237 GCCTCAAGATTTGTTTTTCGCTT 58.949 39.130 0.00 0.00 0.00 4.68
2035 2079 3.552890 GGCCTCAAGATTTGTTTTTCGCT 60.553 43.478 0.00 0.00 0.00 4.93
2036 2080 2.731451 GGCCTCAAGATTTGTTTTTCGC 59.269 45.455 0.00 0.00 0.00 4.70
2037 2081 3.976169 TGGCCTCAAGATTTGTTTTTCG 58.024 40.909 3.32 0.00 0.00 3.46
2038 2082 7.706607 GGTATATGGCCTCAAGATTTGTTTTTC 59.293 37.037 3.32 0.00 0.00 2.29
2039 2083 7.400052 AGGTATATGGCCTCAAGATTTGTTTTT 59.600 33.333 3.32 0.00 0.00 1.94
2040 2084 6.897413 AGGTATATGGCCTCAAGATTTGTTTT 59.103 34.615 3.32 0.00 0.00 2.43
2041 2085 6.435164 AGGTATATGGCCTCAAGATTTGTTT 58.565 36.000 3.32 0.00 0.00 2.83
2042 2086 6.018433 AGGTATATGGCCTCAAGATTTGTT 57.982 37.500 3.32 0.00 0.00 2.83
2043 2087 5.653255 AGGTATATGGCCTCAAGATTTGT 57.347 39.130 3.32 0.00 0.00 2.83
2052 2096 2.490115 CTCTCACGAGGTATATGGCCTC 59.510 54.545 3.32 14.65 46.75 4.70
2053 2097 2.158445 ACTCTCACGAGGTATATGGCCT 60.158 50.000 3.32 0.88 41.71 5.19
2054 2098 2.240279 ACTCTCACGAGGTATATGGCC 58.760 52.381 0.00 0.00 41.71 5.36
2055 2099 4.519730 AGTTACTCTCACGAGGTATATGGC 59.480 45.833 0.00 0.00 41.71 4.40
2056 2100 5.181622 GGAGTTACTCTCACGAGGTATATGG 59.818 48.000 12.41 0.00 44.40 2.74
2057 2101 5.181622 GGGAGTTACTCTCACGAGGTATATG 59.818 48.000 12.41 0.00 44.40 1.78
2058 2102 5.315348 GGGAGTTACTCTCACGAGGTATAT 58.685 45.833 12.41 0.00 44.40 0.86
2059 2103 4.445448 GGGGAGTTACTCTCACGAGGTATA 60.445 50.000 14.72 0.00 46.81 1.47
2060 2104 3.553904 GGGAGTTACTCTCACGAGGTAT 58.446 50.000 12.41 0.00 44.40 2.73
2061 2105 2.356535 GGGGAGTTACTCTCACGAGGTA 60.357 54.545 14.72 0.00 46.81 3.08
2062 2106 1.616456 GGGGAGTTACTCTCACGAGGT 60.616 57.143 14.72 0.00 46.81 3.85
2063 2107 1.104630 GGGGAGTTACTCTCACGAGG 58.895 60.000 14.72 0.00 46.81 4.63
2064 2108 1.104630 GGGGGAGTTACTCTCACGAG 58.895 60.000 14.72 0.00 46.81 4.18
2065 2109 0.406750 TGGGGGAGTTACTCTCACGA 59.593 55.000 14.72 0.00 46.81 4.35
2066 2110 0.818296 CTGGGGGAGTTACTCTCACG 59.182 60.000 14.72 3.39 46.81 4.35
2067 2111 2.233305 TCTGGGGGAGTTACTCTCAC 57.767 55.000 14.72 11.43 45.24 3.51
2068 2112 4.287552 GTTATCTGGGGGAGTTACTCTCA 58.712 47.826 14.72 8.60 44.40 3.27
2069 2113 3.642377 GGTTATCTGGGGGAGTTACTCTC 59.358 52.174 12.41 8.15 42.07 3.20
2070 2114 3.013648 TGGTTATCTGGGGGAGTTACTCT 59.986 47.826 12.41 0.00 0.00 3.24
2071 2115 3.381335 TGGTTATCTGGGGGAGTTACTC 58.619 50.000 3.36 3.36 0.00 2.59
2072 2116 3.246387 ACTGGTTATCTGGGGGAGTTACT 60.246 47.826 0.00 0.00 0.00 2.24
2073 2117 3.113043 ACTGGTTATCTGGGGGAGTTAC 58.887 50.000 0.00 0.00 0.00 2.50
2074 2118 3.502051 ACTGGTTATCTGGGGGAGTTA 57.498 47.619 0.00 0.00 0.00 2.24
2075 2119 2.361085 ACTGGTTATCTGGGGGAGTT 57.639 50.000 0.00 0.00 0.00 3.01
2076 2120 3.113043 GTTACTGGTTATCTGGGGGAGT 58.887 50.000 0.00 0.00 0.00 3.85
2077 2121 2.438392 GGTTACTGGTTATCTGGGGGAG 59.562 54.545 0.00 0.00 0.00 4.30
2078 2122 2.484602 GGTTACTGGTTATCTGGGGGA 58.515 52.381 0.00 0.00 0.00 4.81
2079 2123 1.493446 GGGTTACTGGTTATCTGGGGG 59.507 57.143 0.00 0.00 0.00 5.40
2080 2124 2.488836 AGGGTTACTGGTTATCTGGGG 58.511 52.381 0.00 0.00 0.00 4.96
2081 2125 4.905456 TCATAGGGTTACTGGTTATCTGGG 59.095 45.833 0.00 0.00 0.00 4.45
2082 2126 6.688073 ATCATAGGGTTACTGGTTATCTGG 57.312 41.667 0.00 0.00 0.00 3.86
2087 2131 9.886337 TGTCTTATATCATAGGGTTACTGGTTA 57.114 33.333 0.00 0.00 0.00 2.85
2088 2132 8.648693 GTGTCTTATATCATAGGGTTACTGGTT 58.351 37.037 0.00 0.00 0.00 3.67
2089 2133 7.787904 TGTGTCTTATATCATAGGGTTACTGGT 59.212 37.037 0.00 0.00 0.00 4.00
2090 2134 8.190326 TGTGTCTTATATCATAGGGTTACTGG 57.810 38.462 0.00 0.00 0.00 4.00
2091 2135 9.477484 GTTGTGTCTTATATCATAGGGTTACTG 57.523 37.037 0.00 0.00 0.00 2.74
2092 2136 9.209048 TGTTGTGTCTTATATCATAGGGTTACT 57.791 33.333 0.00 0.00 0.00 2.24
2093 2137 9.998106 ATGTTGTGTCTTATATCATAGGGTTAC 57.002 33.333 0.00 0.00 0.00 2.50
2108 2152 9.228636 GTGTATTTTTCGTTTATGTTGTGTCTT 57.771 29.630 0.00 0.00 0.00 3.01
2109 2153 8.399425 TGTGTATTTTTCGTTTATGTTGTGTCT 58.601 29.630 0.00 0.00 0.00 3.41
2110 2154 8.549777 TGTGTATTTTTCGTTTATGTTGTGTC 57.450 30.769 0.00 0.00 0.00 3.67
2111 2155 8.800031 GTTGTGTATTTTTCGTTTATGTTGTGT 58.200 29.630 0.00 0.00 0.00 3.72
2112 2156 9.015577 AGTTGTGTATTTTTCGTTTATGTTGTG 57.984 29.630 0.00 0.00 0.00 3.33
2113 2157 9.228636 GAGTTGTGTATTTTTCGTTTATGTTGT 57.771 29.630 0.00 0.00 0.00 3.32
2114 2158 8.687301 GGAGTTGTGTATTTTTCGTTTATGTTG 58.313 33.333 0.00 0.00 0.00 3.33
2115 2159 8.626526 AGGAGTTGTGTATTTTTCGTTTATGTT 58.373 29.630 0.00 0.00 0.00 2.71
2116 2160 8.161699 AGGAGTTGTGTATTTTTCGTTTATGT 57.838 30.769 0.00 0.00 0.00 2.29
2117 2161 9.755064 CTAGGAGTTGTGTATTTTTCGTTTATG 57.245 33.333 0.00 0.00 0.00 1.90
2118 2162 8.943002 CCTAGGAGTTGTGTATTTTTCGTTTAT 58.057 33.333 1.05 0.00 0.00 1.40
2119 2163 7.095102 GCCTAGGAGTTGTGTATTTTTCGTTTA 60.095 37.037 14.75 0.00 0.00 2.01
2120 2164 6.293790 GCCTAGGAGTTGTGTATTTTTCGTTT 60.294 38.462 14.75 0.00 0.00 3.60
2121 2165 5.180680 GCCTAGGAGTTGTGTATTTTTCGTT 59.819 40.000 14.75 0.00 0.00 3.85
2122 2166 4.694037 GCCTAGGAGTTGTGTATTTTTCGT 59.306 41.667 14.75 0.00 0.00 3.85
2123 2167 4.935808 AGCCTAGGAGTTGTGTATTTTTCG 59.064 41.667 14.75 0.00 0.00 3.46
2124 2168 6.315642 GGTAGCCTAGGAGTTGTGTATTTTTC 59.684 42.308 14.75 0.00 0.00 2.29
2125 2169 6.178324 GGTAGCCTAGGAGTTGTGTATTTTT 58.822 40.000 14.75 0.00 0.00 1.94
2126 2170 5.338953 GGGTAGCCTAGGAGTTGTGTATTTT 60.339 44.000 14.75 0.00 0.00 1.82
2127 2171 4.163649 GGGTAGCCTAGGAGTTGTGTATTT 59.836 45.833 14.75 0.00 0.00 1.40
2128 2172 3.710165 GGGTAGCCTAGGAGTTGTGTATT 59.290 47.826 14.75 0.00 0.00 1.89
2129 2173 3.306613 GGGTAGCCTAGGAGTTGTGTAT 58.693 50.000 14.75 0.00 0.00 2.29
2130 2174 2.625087 GGGGTAGCCTAGGAGTTGTGTA 60.625 54.545 14.75 0.00 0.00 2.90
2131 2175 1.569653 GGGTAGCCTAGGAGTTGTGT 58.430 55.000 14.75 0.00 0.00 3.72
2132 2176 0.831307 GGGGTAGCCTAGGAGTTGTG 59.169 60.000 14.75 0.00 0.00 3.33
2133 2177 0.717196 AGGGGTAGCCTAGGAGTTGT 59.283 55.000 14.75 0.00 0.00 3.32
2134 2178 1.763545 GAAGGGGTAGCCTAGGAGTTG 59.236 57.143 14.75 0.00 0.00 3.16
2135 2179 1.365028 TGAAGGGGTAGCCTAGGAGTT 59.635 52.381 14.75 0.00 0.00 3.01
2136 2180 1.016415 TGAAGGGGTAGCCTAGGAGT 58.984 55.000 14.75 0.29 0.00 3.85
2137 2181 2.043227 CTTGAAGGGGTAGCCTAGGAG 58.957 57.143 14.75 0.00 0.00 3.69
2138 2182 1.649633 TCTTGAAGGGGTAGCCTAGGA 59.350 52.381 14.75 0.00 0.00 2.94
2139 2183 2.176247 TCTTGAAGGGGTAGCCTAGG 57.824 55.000 11.48 3.67 0.00 3.02
2140 2184 2.436173 CCTTCTTGAAGGGGTAGCCTAG 59.564 54.545 18.90 1.62 36.29 3.02
2141 2185 2.045326 TCCTTCTTGAAGGGGTAGCCTA 59.955 50.000 24.20 4.72 40.38 3.93
2142 2186 1.203440 TCCTTCTTGAAGGGGTAGCCT 60.203 52.381 24.20 0.00 40.38 4.58
2143 2187 1.286248 TCCTTCTTGAAGGGGTAGCC 58.714 55.000 24.20 1.07 40.38 3.93
2144 2188 3.546724 GATTCCTTCTTGAAGGGGTAGC 58.453 50.000 24.20 12.33 40.38 3.58
2145 2189 3.798202 CGATTCCTTCTTGAAGGGGTAG 58.202 50.000 24.20 12.58 40.38 3.18
2146 2190 2.093128 GCGATTCCTTCTTGAAGGGGTA 60.093 50.000 24.20 13.35 40.38 3.69
2147 2191 1.340114 GCGATTCCTTCTTGAAGGGGT 60.340 52.381 24.20 15.33 40.38 4.95
2148 2192 1.383523 GCGATTCCTTCTTGAAGGGG 58.616 55.000 24.20 14.44 40.38 4.79
2149 2193 1.340017 TGGCGATTCCTTCTTGAAGGG 60.340 52.381 24.20 12.45 40.38 3.95
2150 2194 1.740025 GTGGCGATTCCTTCTTGAAGG 59.260 52.381 20.21 20.21 41.35 3.46
2151 2195 2.160417 GTGTGGCGATTCCTTCTTGAAG 59.840 50.000 3.55 3.55 35.26 3.02
2152 2196 2.151202 GTGTGGCGATTCCTTCTTGAA 58.849 47.619 0.00 0.00 35.26 2.69
2153 2197 1.808411 GTGTGGCGATTCCTTCTTGA 58.192 50.000 0.00 0.00 35.26 3.02
2154 2198 0.443869 CGTGTGGCGATTCCTTCTTG 59.556 55.000 0.00 0.00 44.77 3.02
2155 2199 0.034896 ACGTGTGGCGATTCCTTCTT 59.965 50.000 0.00 0.00 44.77 2.52
2156 2200 0.670546 CACGTGTGGCGATTCCTTCT 60.671 55.000 7.58 0.00 44.77 2.85
2157 2201 1.787847 CACGTGTGGCGATTCCTTC 59.212 57.895 7.58 0.00 44.77 3.46
2158 2202 2.325082 GCACGTGTGGCGATTCCTT 61.325 57.895 18.38 0.00 44.77 3.36
2159 2203 2.742372 GCACGTGTGGCGATTCCT 60.742 61.111 18.38 0.00 44.77 3.36
2168 2212 3.188100 ATCATCGGCGCACGTGTG 61.188 61.111 24.45 24.45 44.69 3.82
2169 2213 3.188100 CATCATCGGCGCACGTGT 61.188 61.111 18.38 1.60 44.69 4.49
2170 2214 3.928769 CCATCATCGGCGCACGTG 61.929 66.667 12.28 12.28 44.69 4.49
2171 2215 4.451150 ACCATCATCGGCGCACGT 62.451 61.111 10.83 0.00 44.69 4.49
2172 2216 3.928769 CACCATCATCGGCGCACG 61.929 66.667 10.83 11.16 46.11 5.34
2173 2217 2.511373 TCACCATCATCGGCGCAC 60.511 61.111 10.83 0.00 0.00 5.34
2174 2218 2.202919 CTCACCATCATCGGCGCA 60.203 61.111 10.83 0.00 0.00 6.09
2175 2219 2.202932 ACTCACCATCATCGGCGC 60.203 61.111 0.00 0.00 0.00 6.53
2176 2220 1.592669 GGACTCACCATCATCGGCG 60.593 63.158 0.00 0.00 38.79 6.46
2177 2221 1.522092 TGGACTCACCATCATCGGC 59.478 57.895 0.00 0.00 44.64 5.54
2188 2232 3.136443 AGTTCAACCTTGTGATGGACTCA 59.864 43.478 0.00 0.00 0.00 3.41
2189 2233 3.744660 AGTTCAACCTTGTGATGGACTC 58.255 45.455 0.00 0.00 0.00 3.36
2190 2234 3.864789 AGTTCAACCTTGTGATGGACT 57.135 42.857 0.00 0.00 0.00 3.85
2191 2235 3.058914 CGAAGTTCAACCTTGTGATGGAC 60.059 47.826 3.32 0.00 0.00 4.02
2192 2236 3.138304 CGAAGTTCAACCTTGTGATGGA 58.862 45.455 3.32 0.00 0.00 3.41
2193 2237 2.226437 CCGAAGTTCAACCTTGTGATGG 59.774 50.000 3.32 0.00 0.00 3.51
2194 2238 3.138304 TCCGAAGTTCAACCTTGTGATG 58.862 45.455 3.32 0.00 0.00 3.07
2195 2239 3.485463 TCCGAAGTTCAACCTTGTGAT 57.515 42.857 3.32 0.00 0.00 3.06
2196 2240 2.992124 TCCGAAGTTCAACCTTGTGA 57.008 45.000 3.32 0.00 0.00 3.58
2197 2241 3.815401 AGAATCCGAAGTTCAACCTTGTG 59.185 43.478 3.32 0.00 0.00 3.33
2198 2242 4.065789 GAGAATCCGAAGTTCAACCTTGT 58.934 43.478 3.32 0.00 0.00 3.16
2199 2243 4.065088 TGAGAATCCGAAGTTCAACCTTG 58.935 43.478 3.32 0.00 0.00 3.61
2200 2244 4.351874 TGAGAATCCGAAGTTCAACCTT 57.648 40.909 3.32 0.00 0.00 3.50
2201 2245 4.508662 GATGAGAATCCGAAGTTCAACCT 58.491 43.478 3.32 0.00 0.00 3.50
2202 2246 3.623510 GGATGAGAATCCGAAGTTCAACC 59.376 47.826 3.32 0.00 0.00 3.77
2203 2247 3.623510 GGGATGAGAATCCGAAGTTCAAC 59.376 47.826 3.32 0.00 41.63 3.18
2204 2248 3.370527 GGGGATGAGAATCCGAAGTTCAA 60.371 47.826 3.32 0.00 41.63 2.69
2205 2249 2.170607 GGGGATGAGAATCCGAAGTTCA 59.829 50.000 3.32 0.00 41.63 3.18
2206 2250 2.170607 TGGGGATGAGAATCCGAAGTTC 59.829 50.000 0.00 0.00 41.63 3.01
2207 2251 2.196595 TGGGGATGAGAATCCGAAGTT 58.803 47.619 0.00 0.00 41.63 2.66
2208 2252 1.879575 TGGGGATGAGAATCCGAAGT 58.120 50.000 0.00 0.00 41.63 3.01
2209 2253 3.209410 CTTTGGGGATGAGAATCCGAAG 58.791 50.000 0.00 0.00 41.63 3.79
2210 2254 2.683742 GCTTTGGGGATGAGAATCCGAA 60.684 50.000 0.00 0.00 41.63 4.30
2211 2255 1.134098 GCTTTGGGGATGAGAATCCGA 60.134 52.381 0.00 0.00 41.63 4.55
2212 2256 1.312815 GCTTTGGGGATGAGAATCCG 58.687 55.000 0.00 0.00 41.63 4.18
2213 2257 2.442236 TGCTTTGGGGATGAGAATCC 57.558 50.000 0.00 0.00 39.99 3.01
2214 2258 3.766051 ACTTTGCTTTGGGGATGAGAATC 59.234 43.478 0.00 0.00 0.00 2.52
2215 2259 3.782992 ACTTTGCTTTGGGGATGAGAAT 58.217 40.909 0.00 0.00 0.00 2.40
2216 2260 3.243359 ACTTTGCTTTGGGGATGAGAA 57.757 42.857 0.00 0.00 0.00 2.87
2217 2261 2.978156 ACTTTGCTTTGGGGATGAGA 57.022 45.000 0.00 0.00 0.00 3.27
2218 2262 3.321682 TGAAACTTTGCTTTGGGGATGAG 59.678 43.478 0.00 0.00 0.00 2.90
2219 2263 3.303938 TGAAACTTTGCTTTGGGGATGA 58.696 40.909 0.00 0.00 0.00 2.92
2220 2264 3.070015 ACTGAAACTTTGCTTTGGGGATG 59.930 43.478 0.00 0.00 0.00 3.51
2221 2265 3.308401 ACTGAAACTTTGCTTTGGGGAT 58.692 40.909 0.00 0.00 0.00 3.85
2222 2266 2.693074 GACTGAAACTTTGCTTTGGGGA 59.307 45.455 0.00 0.00 0.00 4.81
2223 2267 2.224042 GGACTGAAACTTTGCTTTGGGG 60.224 50.000 0.00 0.00 0.00 4.96
2224 2268 2.430332 TGGACTGAAACTTTGCTTTGGG 59.570 45.455 0.00 0.00 0.00 4.12
2225 2269 3.447742 GTGGACTGAAACTTTGCTTTGG 58.552 45.455 0.00 0.00 0.00 3.28
2226 2270 3.119173 TGGTGGACTGAAACTTTGCTTTG 60.119 43.478 0.00 0.00 0.00 2.77
2227 2271 3.096092 TGGTGGACTGAAACTTTGCTTT 58.904 40.909 0.00 0.00 0.00 3.51
2228 2272 2.427095 GTGGTGGACTGAAACTTTGCTT 59.573 45.455 0.00 0.00 0.00 3.91
2229 2273 2.024414 GTGGTGGACTGAAACTTTGCT 58.976 47.619 0.00 0.00 0.00 3.91
2230 2274 1.067060 GGTGGTGGACTGAAACTTTGC 59.933 52.381 0.00 0.00 0.00 3.68
2231 2275 2.654863 AGGTGGTGGACTGAAACTTTG 58.345 47.619 0.00 0.00 0.00 2.77
2232 2276 3.288092 GAAGGTGGTGGACTGAAACTTT 58.712 45.455 0.00 0.00 0.00 2.66
2233 2277 2.241176 TGAAGGTGGTGGACTGAAACTT 59.759 45.455 0.00 0.00 0.00 2.66
2234 2278 1.843851 TGAAGGTGGTGGACTGAAACT 59.156 47.619 0.00 0.00 0.00 2.66
2235 2279 2.222027 CTGAAGGTGGTGGACTGAAAC 58.778 52.381 0.00 0.00 0.00 2.78
2236 2280 1.843851 ACTGAAGGTGGTGGACTGAAA 59.156 47.619 0.00 0.00 0.00 2.69
2237 2281 1.140852 CACTGAAGGTGGTGGACTGAA 59.859 52.381 0.00 0.00 41.90 3.02
2238 2282 0.758734 CACTGAAGGTGGTGGACTGA 59.241 55.000 0.00 0.00 41.90 3.41
2239 2283 0.758734 TCACTGAAGGTGGTGGACTG 59.241 55.000 0.00 0.00 45.38 3.51
2240 2284 1.051812 CTCACTGAAGGTGGTGGACT 58.948 55.000 0.00 0.00 45.38 3.85
2241 2285 0.035458 CCTCACTGAAGGTGGTGGAC 59.965 60.000 0.00 0.00 45.38 4.02
2242 2286 0.105194 TCCTCACTGAAGGTGGTGGA 60.105 55.000 0.00 0.00 45.38 4.02
2243 2287 0.035458 GTCCTCACTGAAGGTGGTGG 59.965 60.000 0.00 0.00 45.38 4.61
2244 2288 0.758734 TGTCCTCACTGAAGGTGGTG 59.241 55.000 0.00 0.00 45.38 4.17
2245 2289 3.240670 TGTCCTCACTGAAGGTGGT 57.759 52.632 0.00 0.00 45.38 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.