Multiple sequence alignment - TraesCS3D01G424900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G424900 chr3D 100.000 3995 0 0 1 3995 537138266 537142260 0.000000e+00 7378.0
1 TraesCS3D01G424900 chr3D 89.302 215 23 0 32 246 603965550 603965764 1.830000e-68 270.0
2 TraesCS3D01G424900 chr3A 96.751 3293 84 11 722 3995 672544730 672548018 0.000000e+00 5467.0
3 TraesCS3D01G424900 chr3B 95.476 3404 92 36 642 3995 710581053 710584444 0.000000e+00 5376.0
4 TraesCS3D01G424900 chr3B 85.270 964 86 34 691 1612 710563367 710564316 0.000000e+00 942.0
5 TraesCS3D01G424900 chr3B 84.186 215 34 0 32 246 133379557 133379771 4.050000e-50 209.0
6 TraesCS3D01G424900 chr3B 91.071 56 0 2 594 649 710577298 710577348 1.990000e-08 71.3
7 TraesCS3D01G424900 chr4B 93.255 1023 42 10 2144 3154 22596592 22595585 0.000000e+00 1482.0
8 TraesCS3D01G424900 chr4B 93.267 505 30 1 1646 2146 22608776 22608272 0.000000e+00 741.0
9 TraesCS3D01G424900 chr4B 91.135 282 22 3 3152 3431 22595471 22595191 2.910000e-101 379.0
10 TraesCS3D01G424900 chr1D 84.259 1315 185 14 1690 2999 11413343 11414640 0.000000e+00 1262.0
11 TraesCS3D01G424900 chr1D 81.340 1313 219 16 1681 2986 19309208 19310501 0.000000e+00 1044.0
12 TraesCS3D01G424900 chr1D 85.253 217 29 1 32 245 484448266 484448050 1.870000e-53 220.0
13 TraesCS3D01G424900 chr1D 83.173 208 31 3 32 239 442684054 442684257 1.900000e-43 187.0
14 TraesCS3D01G424900 chr4D 92.222 180 14 0 44 223 349136456 349136277 5.120000e-64 255.0
15 TraesCS3D01G424900 chr7B 86.111 216 29 1 32 246 599860358 599860143 8.630000e-57 231.0
16 TraesCS3D01G424900 chr7B 84.076 157 19 5 1003 1155 34610099 34610253 3.220000e-31 147.0
17 TraesCS3D01G424900 chr6D 85.973 221 25 2 32 246 456120426 456120206 8.630000e-57 231.0
18 TraesCS3D01G424900 chr6D 81.013 237 40 4 238 472 445511873 445511640 2.450000e-42 183.0
19 TraesCS3D01G424900 chr1A 85.202 223 28 4 246 467 27254886 27255104 1.440000e-54 224.0
20 TraesCS3D01G424900 chr2B 84.434 212 31 2 37 247 110685488 110685698 1.460000e-49 207.0
21 TraesCS3D01G424900 chr2B 83.556 225 25 10 246 469 794098271 794098484 2.430000e-47 200.0
22 TraesCS3D01G424900 chr2B 83.556 225 25 10 246 469 794107281 794107494 2.430000e-47 200.0
23 TraesCS3D01G424900 chr6B 83.019 212 31 4 32 240 707602163 707601954 1.900000e-43 187.0
24 TraesCS3D01G424900 chr6B 83.854 192 27 4 273 461 166775026 166774836 3.170000e-41 180.0
25 TraesCS3D01G424900 chr7A 83.636 165 21 5 1003 1163 86048244 86048406 2.490000e-32 150.0
26 TraesCS3D01G424900 chr7A 78.646 192 39 2 247 437 432965838 432966028 4.190000e-25 126.0
27 TraesCS3D01G424900 chr7D 85.821 134 16 3 1003 1135 84986173 84986304 5.380000e-29 139.0
28 TraesCS3D01G424900 chr5B 81.988 161 21 5 247 401 31873441 31873599 3.240000e-26 130.0
29 TraesCS3D01G424900 chr5B 81.875 160 22 4 247 401 31902815 31902972 1.170000e-25 128.0
30 TraesCS3D01G424900 chr5B 78.027 223 34 10 229 449 489503035 489502826 4.190000e-25 126.0
31 TraesCS3D01G424900 chr5D 78.358 134 21 6 1413 1541 440157591 440157721 3.310000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G424900 chr3D 537138266 537142260 3994 False 7378.00 7378 100.0000 1 3995 1 chr3D.!!$F1 3994
1 TraesCS3D01G424900 chr3A 672544730 672548018 3288 False 5467.00 5467 96.7510 722 3995 1 chr3A.!!$F1 3273
2 TraesCS3D01G424900 chr3B 710577298 710584444 7146 False 2723.65 5376 93.2735 594 3995 2 chr3B.!!$F3 3401
3 TraesCS3D01G424900 chr3B 710563367 710564316 949 False 942.00 942 85.2700 691 1612 1 chr3B.!!$F2 921
4 TraesCS3D01G424900 chr4B 22595191 22596592 1401 True 930.50 1482 92.1950 2144 3431 2 chr4B.!!$R2 1287
5 TraesCS3D01G424900 chr4B 22608272 22608776 504 True 741.00 741 93.2670 1646 2146 1 chr4B.!!$R1 500
6 TraesCS3D01G424900 chr1D 11413343 11414640 1297 False 1262.00 1262 84.2590 1690 2999 1 chr1D.!!$F1 1309
7 TraesCS3D01G424900 chr1D 19309208 19310501 1293 False 1044.00 1044 81.3400 1681 2986 1 chr1D.!!$F2 1305

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
398 399 0.028242 CCCGCGCGTGCAATATTTTA 59.972 50.0 29.95 0.0 42.97 1.52 F
445 446 0.109365 TGCGCGCAAAAACATGCTAT 60.109 45.0 34.66 0.0 44.21 2.97 F
2115 5907 0.179121 TTGGTATGTACGAGGCGCTG 60.179 55.0 7.64 0.0 0.00 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2191 5983 0.032416 TCCCCTAGCCTGACCAGTAC 60.032 60.0 0.00 0.0 0.00 2.73 R
2331 6131 0.036010 AGCGGCTGTAATCTGCAAGT 60.036 50.0 0.00 0.0 39.69 3.16 R
3285 7210 1.381165 GCCAATAAACCCGTGCGGAT 61.381 55.0 12.71 0.0 37.50 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.949465 AATAATCAACGAGGACCGCC 58.051 50.000 0.00 0.00 43.32 6.13
20 21 0.828022 ATAATCAACGAGGACCGCCA 59.172 50.000 0.00 0.00 43.32 5.69
21 22 0.108520 TAATCAACGAGGACCGCCAC 60.109 55.000 0.00 0.00 43.32 5.01
27 28 2.737376 GAGGACCGCCACGAACAC 60.737 66.667 0.00 0.00 36.29 3.32
28 29 3.222354 GAGGACCGCCACGAACACT 62.222 63.158 0.00 0.00 36.29 3.55
29 30 3.041940 GGACCGCCACGAACACTG 61.042 66.667 0.00 0.00 0.00 3.66
30 31 2.279918 GACCGCCACGAACACTGT 60.280 61.111 0.00 0.00 0.00 3.55
31 32 1.007038 GACCGCCACGAACACTGTA 60.007 57.895 0.00 0.00 0.00 2.74
32 33 1.006571 ACCGCCACGAACACTGTAG 60.007 57.895 0.00 0.00 0.00 2.74
33 34 1.736645 CCGCCACGAACACTGTAGG 60.737 63.158 0.00 0.00 0.00 3.18
34 35 1.287815 CGCCACGAACACTGTAGGA 59.712 57.895 0.00 0.00 0.00 2.94
35 36 1.007336 CGCCACGAACACTGTAGGAC 61.007 60.000 0.00 0.00 0.00 3.85
36 37 1.007336 GCCACGAACACTGTAGGACG 61.007 60.000 0.00 0.00 0.00 4.79
37 38 0.313043 CCACGAACACTGTAGGACGT 59.687 55.000 0.00 0.00 34.40 4.34
38 39 1.665161 CCACGAACACTGTAGGACGTC 60.665 57.143 7.13 7.13 31.82 4.34
39 40 0.236711 ACGAACACTGTAGGACGTCG 59.763 55.000 9.92 0.00 0.00 5.12
40 41 1.063951 CGAACACTGTAGGACGTCGC 61.064 60.000 9.92 2.53 0.00 5.19
41 42 0.240411 GAACACTGTAGGACGTCGCT 59.760 55.000 9.92 10.39 0.00 4.93
42 43 0.039437 AACACTGTAGGACGTCGCTG 60.039 55.000 9.92 8.78 0.00 5.18
43 44 1.170919 ACACTGTAGGACGTCGCTGT 61.171 55.000 9.92 9.38 0.00 4.40
44 45 0.454620 CACTGTAGGACGTCGCTGTC 60.455 60.000 9.92 6.76 38.17 3.51
45 46 1.226046 CTGTAGGACGTCGCTGTCG 60.226 63.158 9.92 0.00 39.83 4.35
46 47 1.632948 CTGTAGGACGTCGCTGTCGA 61.633 60.000 9.92 0.00 43.28 4.20
47 48 1.060622 GTAGGACGTCGCTGTCGAG 59.939 63.158 9.92 0.00 46.46 4.04
53 54 4.500116 GTCGCTGTCGAGGAGGCC 62.500 72.222 0.00 0.00 46.46 5.19
54 55 4.742649 TCGCTGTCGAGGAGGCCT 62.743 66.667 3.86 3.86 40.21 5.19
55 56 3.764466 CGCTGTCGAGGAGGCCTT 61.764 66.667 6.77 0.00 38.10 4.35
56 57 2.185608 GCTGTCGAGGAGGCCTTC 59.814 66.667 6.77 3.97 31.76 3.46
57 58 2.355193 GCTGTCGAGGAGGCCTTCT 61.355 63.158 15.58 15.58 31.76 2.85
58 59 1.515020 CTGTCGAGGAGGCCTTCTG 59.485 63.158 21.72 11.32 31.76 3.02
59 60 1.954362 CTGTCGAGGAGGCCTTCTGG 61.954 65.000 21.72 19.01 31.76 3.86
60 61 2.364317 TCGAGGAGGCCTTCTGGG 60.364 66.667 21.72 10.61 31.76 4.45
61 62 2.685380 CGAGGAGGCCTTCTGGGT 60.685 66.667 21.72 0.00 37.43 4.51
62 63 2.993853 GAGGAGGCCTTCTGGGTG 59.006 66.667 21.72 0.00 37.43 4.61
63 64 2.612115 AGGAGGCCTTCTGGGTGG 60.612 66.667 14.71 0.00 37.43 4.61
64 65 2.610859 GGAGGCCTTCTGGGTGGA 60.611 66.667 6.77 0.00 37.43 4.02
65 66 2.674220 GGAGGCCTTCTGGGTGGAG 61.674 68.421 6.77 0.00 37.43 3.86
66 67 1.613630 GAGGCCTTCTGGGTGGAGA 60.614 63.158 6.77 0.00 37.43 3.71
67 68 1.614824 AGGCCTTCTGGGTGGAGAG 60.615 63.158 0.00 0.00 37.43 3.20
68 69 2.674220 GGCCTTCTGGGTGGAGAGG 61.674 68.421 0.00 0.00 37.43 3.69
69 70 1.613630 GCCTTCTGGGTGGAGAGGA 60.614 63.158 0.00 0.00 37.43 3.71
70 71 1.621672 GCCTTCTGGGTGGAGAGGAG 61.622 65.000 0.00 0.00 37.43 3.69
71 72 0.980231 CCTTCTGGGTGGAGAGGAGG 60.980 65.000 0.00 0.00 0.00 4.30
72 73 0.980231 CTTCTGGGTGGAGAGGAGGG 60.980 65.000 0.00 0.00 0.00 4.30
73 74 3.086600 CTGGGTGGAGAGGAGGGC 61.087 72.222 0.00 0.00 0.00 5.19
74 75 3.931631 CTGGGTGGAGAGGAGGGCA 62.932 68.421 0.00 0.00 0.00 5.36
75 76 2.610859 GGGTGGAGAGGAGGGCAA 60.611 66.667 0.00 0.00 0.00 4.52
76 77 2.231380 GGGTGGAGAGGAGGGCAAA 61.231 63.158 0.00 0.00 0.00 3.68
77 78 1.301293 GGTGGAGAGGAGGGCAAAG 59.699 63.158 0.00 0.00 0.00 2.77
78 79 1.377856 GTGGAGAGGAGGGCAAAGC 60.378 63.158 0.00 0.00 0.00 3.51
79 80 2.124942 GGAGAGGAGGGCAAAGCG 60.125 66.667 0.00 0.00 0.00 4.68
80 81 2.660064 GGAGAGGAGGGCAAAGCGA 61.660 63.158 0.00 0.00 0.00 4.93
81 82 1.153469 GAGAGGAGGGCAAAGCGAG 60.153 63.158 0.00 0.00 0.00 5.03
82 83 2.821810 GAGGAGGGCAAAGCGAGC 60.822 66.667 0.00 0.00 0.00 5.03
104 105 4.681978 GAACGGGCAGACAGGCGT 62.682 66.667 0.00 0.00 45.36 5.68
105 106 4.988598 AACGGGCAGACAGGCGTG 62.989 66.667 4.53 4.53 45.36 5.34
125 126 2.499205 CGGAAGGCACTGGCGATA 59.501 61.111 0.00 0.00 40.86 2.92
126 127 1.592669 CGGAAGGCACTGGCGATAG 60.593 63.158 0.00 0.00 40.86 2.08
145 146 2.280797 GCAGTGCGAACTGGGACA 60.281 61.111 24.99 0.00 38.14 4.02
146 147 1.891919 GCAGTGCGAACTGGGACAA 60.892 57.895 24.99 0.00 38.70 3.18
147 148 1.845809 GCAGTGCGAACTGGGACAAG 61.846 60.000 24.99 0.00 38.70 3.16
148 149 1.598130 AGTGCGAACTGGGACAAGC 60.598 57.895 0.00 0.00 38.70 4.01
149 150 2.664851 TGCGAACTGGGACAAGCG 60.665 61.111 0.00 0.00 38.70 4.68
150 151 2.665185 GCGAACTGGGACAAGCGT 60.665 61.111 0.00 0.00 38.70 5.07
151 152 2.668280 GCGAACTGGGACAAGCGTC 61.668 63.158 0.00 0.00 38.70 5.19
152 153 2.372690 CGAACTGGGACAAGCGTCG 61.373 63.158 0.00 0.00 43.61 5.12
153 154 1.006571 GAACTGGGACAAGCGTCGA 60.007 57.895 0.00 0.00 43.61 4.20
154 155 1.282930 GAACTGGGACAAGCGTCGAC 61.283 60.000 5.18 5.18 43.61 4.20
155 156 2.432628 CTGGGACAAGCGTCGACC 60.433 66.667 10.58 2.76 43.61 4.79
156 157 2.915659 TGGGACAAGCGTCGACCT 60.916 61.111 10.58 5.32 43.61 3.85
157 158 2.342648 GGGACAAGCGTCGACCTT 59.657 61.111 10.58 11.40 43.61 3.50
158 159 1.737008 GGGACAAGCGTCGACCTTC 60.737 63.158 10.58 3.92 43.61 3.46
159 160 2.087009 GGACAAGCGTCGACCTTCG 61.087 63.158 10.58 10.93 43.61 3.79
168 169 2.876052 TCGACCTTCGACAACAACG 58.124 52.632 0.00 0.00 44.82 4.10
169 170 0.381445 TCGACCTTCGACAACAACGA 59.619 50.000 0.00 0.00 44.82 3.85
170 171 1.001048 TCGACCTTCGACAACAACGAT 60.001 47.619 0.00 0.00 44.82 3.73
171 172 1.385743 CGACCTTCGACAACAACGATC 59.614 52.381 0.00 0.00 43.74 3.69
172 173 1.725164 GACCTTCGACAACAACGATCC 59.275 52.381 0.00 0.00 39.45 3.36
173 174 1.343465 ACCTTCGACAACAACGATCCT 59.657 47.619 0.00 0.00 39.45 3.24
174 175 1.993370 CCTTCGACAACAACGATCCTC 59.007 52.381 0.00 0.00 39.45 3.71
175 176 1.649171 CTTCGACAACAACGATCCTCG 59.351 52.381 0.00 0.00 46.93 4.63
176 177 0.109458 TCGACAACAACGATCCTCGG 60.109 55.000 1.29 0.00 45.59 4.63
177 178 0.388134 CGACAACAACGATCCTCGGT 60.388 55.000 1.29 0.00 42.68 4.69
183 184 1.823295 AACGATCCTCGGTGGGATG 59.177 57.895 9.52 5.89 45.18 3.51
184 185 0.686441 AACGATCCTCGGTGGGATGA 60.686 55.000 9.52 0.00 45.18 2.92
185 186 1.364171 CGATCCTCGGTGGGATGAC 59.636 63.158 9.52 0.00 45.18 3.06
186 187 1.364171 GATCCTCGGTGGGATGACG 59.636 63.158 9.52 0.00 45.18 4.35
187 188 2.701163 GATCCTCGGTGGGATGACGC 62.701 65.000 9.52 0.00 45.18 5.19
188 189 4.873129 CCTCGGTGGGATGACGCG 62.873 72.222 3.53 3.53 0.00 6.01
189 190 4.129737 CTCGGTGGGATGACGCGT 62.130 66.667 13.85 13.85 0.00 6.01
190 191 3.642778 CTCGGTGGGATGACGCGTT 62.643 63.158 15.53 0.00 0.00 4.84
191 192 2.740826 CGGTGGGATGACGCGTTT 60.741 61.111 15.53 3.78 0.00 3.60
192 193 2.736682 CGGTGGGATGACGCGTTTC 61.737 63.158 15.53 13.97 0.00 2.78
193 194 1.375523 GGTGGGATGACGCGTTTCT 60.376 57.895 15.53 0.00 0.00 2.52
194 195 0.953960 GGTGGGATGACGCGTTTCTT 60.954 55.000 15.53 0.00 0.00 2.52
195 196 0.872388 GTGGGATGACGCGTTTCTTT 59.128 50.000 15.53 0.00 0.00 2.52
196 197 1.136057 GTGGGATGACGCGTTTCTTTC 60.136 52.381 15.53 6.25 0.00 2.62
197 198 0.094730 GGGATGACGCGTTTCTTTCG 59.905 55.000 15.53 0.00 0.00 3.46
198 199 0.788391 GGATGACGCGTTTCTTTCGT 59.212 50.000 15.53 0.00 39.33 3.85
200 201 4.673635 GACGCGTTTCTTTCGTCG 57.326 55.556 15.53 0.00 42.18 5.12
201 202 1.127225 GACGCGTTTCTTTCGTCGG 59.873 57.895 15.53 0.00 42.18 4.79
202 203 1.270777 GACGCGTTTCTTTCGTCGGA 61.271 55.000 15.53 0.00 42.18 4.55
203 204 1.127225 CGCGTTTCTTTCGTCGGAC 59.873 57.895 0.00 0.00 0.00 4.79
204 205 1.273455 CGCGTTTCTTTCGTCGGACT 61.273 55.000 6.57 0.00 0.00 3.85
205 206 1.689959 GCGTTTCTTTCGTCGGACTA 58.310 50.000 6.57 0.00 0.00 2.59
206 207 2.257034 GCGTTTCTTTCGTCGGACTAT 58.743 47.619 6.57 0.00 0.00 2.12
207 208 3.429085 GCGTTTCTTTCGTCGGACTATA 58.571 45.455 6.57 0.00 0.00 1.31
208 209 3.239254 GCGTTTCTTTCGTCGGACTATAC 59.761 47.826 6.57 0.00 0.00 1.47
209 210 3.788163 CGTTTCTTTCGTCGGACTATACC 59.212 47.826 6.57 0.00 0.00 2.73
210 211 4.672542 CGTTTCTTTCGTCGGACTATACCA 60.673 45.833 6.57 0.00 0.00 3.25
211 212 4.361451 TTCTTTCGTCGGACTATACCAC 57.639 45.455 6.57 0.00 0.00 4.16
212 213 2.684881 TCTTTCGTCGGACTATACCACC 59.315 50.000 6.57 0.00 0.00 4.61
213 214 1.016627 TTCGTCGGACTATACCACCG 58.983 55.000 6.57 0.00 46.71 4.94
220 221 1.144503 GGACTATACCACCGAGGAGGA 59.855 57.143 12.54 0.00 45.00 3.71
221 222 2.506444 GACTATACCACCGAGGAGGAG 58.494 57.143 12.54 2.36 45.00 3.69
225 226 3.141488 CCACCGAGGAGGAGGTCG 61.141 72.222 0.00 0.00 44.62 4.79
226 227 2.045242 CACCGAGGAGGAGGTCGA 60.045 66.667 0.00 0.00 45.00 4.20
227 228 2.045143 ACCGAGGAGGAGGTCGAC 60.045 66.667 7.13 7.13 45.00 4.20
228 229 2.272797 CCGAGGAGGAGGTCGACT 59.727 66.667 16.46 0.90 45.00 4.18
229 230 1.820481 CCGAGGAGGAGGTCGACTC 60.820 68.421 16.46 10.65 45.00 3.36
237 238 3.457099 GAGGTCGACTCGGAGTAGT 57.543 57.895 16.46 0.00 36.29 2.73
238 239 1.736612 GAGGTCGACTCGGAGTAGTT 58.263 55.000 16.46 1.95 36.29 2.24
239 240 2.083002 GAGGTCGACTCGGAGTAGTTT 58.917 52.381 16.46 1.61 36.29 2.66
240 241 2.083002 AGGTCGACTCGGAGTAGTTTC 58.917 52.381 16.46 6.50 0.00 2.78
241 242 2.083002 GGTCGACTCGGAGTAGTTTCT 58.917 52.381 16.46 0.00 0.00 2.52
242 243 3.055530 AGGTCGACTCGGAGTAGTTTCTA 60.056 47.826 16.46 0.00 0.00 2.10
243 244 3.309410 GGTCGACTCGGAGTAGTTTCTAG 59.691 52.174 16.46 0.00 0.00 2.43
244 245 3.932089 GTCGACTCGGAGTAGTTTCTAGT 59.068 47.826 11.27 0.00 0.00 2.57
245 246 5.105752 GTCGACTCGGAGTAGTTTCTAGTA 58.894 45.833 11.27 0.00 0.00 1.82
246 247 5.231991 GTCGACTCGGAGTAGTTTCTAGTAG 59.768 48.000 11.27 0.00 0.00 2.57
247 248 5.126222 TCGACTCGGAGTAGTTTCTAGTAGA 59.874 44.000 11.27 0.00 0.00 2.59
248 249 5.231991 CGACTCGGAGTAGTTTCTAGTAGAC 59.768 48.000 11.27 0.00 0.00 2.59
249 250 6.298441 ACTCGGAGTAGTTTCTAGTAGACT 57.702 41.667 9.33 0.00 0.00 3.24
250 251 7.416964 ACTCGGAGTAGTTTCTAGTAGACTA 57.583 40.000 9.33 0.00 0.00 2.59
251 252 7.491682 ACTCGGAGTAGTTTCTAGTAGACTAG 58.508 42.308 9.33 10.00 45.57 2.57
252 253 7.124147 ACTCGGAGTAGTTTCTAGTAGACTAGT 59.876 40.741 9.33 0.00 44.74 2.57
253 254 7.846066 TCGGAGTAGTTTCTAGTAGACTAGTT 58.154 38.462 14.79 4.57 44.74 2.24
254 255 8.317679 TCGGAGTAGTTTCTAGTAGACTAGTTT 58.682 37.037 14.79 0.00 44.74 2.66
255 256 8.389603 CGGAGTAGTTTCTAGTAGACTAGTTTG 58.610 40.741 14.79 0.00 44.74 2.93
256 257 9.230122 GGAGTAGTTTCTAGTAGACTAGTTTGT 57.770 37.037 14.79 4.01 44.74 2.83
258 259 9.790344 AGTAGTTTCTAGTAGACTAGTTTGTGA 57.210 33.333 14.79 0.00 44.74 3.58
261 262 9.080097 AGTTTCTAGTAGACTAGTTTGTGATGT 57.920 33.333 14.79 0.00 44.74 3.06
262 263 9.694137 GTTTCTAGTAGACTAGTTTGTGATGTT 57.306 33.333 14.79 0.00 44.74 2.71
263 264 9.692749 TTTCTAGTAGACTAGTTTGTGATGTTG 57.307 33.333 14.79 0.00 44.74 3.33
264 265 7.827701 TCTAGTAGACTAGTTTGTGATGTTGG 58.172 38.462 14.79 0.00 44.74 3.77
265 266 5.794894 AGTAGACTAGTTTGTGATGTTGGG 58.205 41.667 0.00 0.00 0.00 4.12
266 267 4.706842 AGACTAGTTTGTGATGTTGGGT 57.293 40.909 0.00 0.00 0.00 4.51
267 268 5.048846 AGACTAGTTTGTGATGTTGGGTT 57.951 39.130 0.00 0.00 0.00 4.11
268 269 4.821805 AGACTAGTTTGTGATGTTGGGTTG 59.178 41.667 0.00 0.00 0.00 3.77
269 270 4.787551 ACTAGTTTGTGATGTTGGGTTGA 58.212 39.130 0.00 0.00 0.00 3.18
270 271 5.197451 ACTAGTTTGTGATGTTGGGTTGAA 58.803 37.500 0.00 0.00 0.00 2.69
271 272 4.385358 AGTTTGTGATGTTGGGTTGAAC 57.615 40.909 0.00 0.00 0.00 3.18
272 273 4.023291 AGTTTGTGATGTTGGGTTGAACT 58.977 39.130 0.00 0.00 0.00 3.01
273 274 4.111916 GTTTGTGATGTTGGGTTGAACTG 58.888 43.478 0.00 0.00 0.00 3.16
274 275 3.011566 TGTGATGTTGGGTTGAACTGT 57.988 42.857 0.00 0.00 0.00 3.55
275 276 2.687425 TGTGATGTTGGGTTGAACTGTG 59.313 45.455 0.00 0.00 0.00 3.66
276 277 1.680735 TGATGTTGGGTTGAACTGTGC 59.319 47.619 0.00 0.00 0.00 4.57
277 278 1.956477 GATGTTGGGTTGAACTGTGCT 59.044 47.619 0.00 0.00 0.00 4.40
278 279 2.719531 TGTTGGGTTGAACTGTGCTA 57.280 45.000 0.00 0.00 0.00 3.49
279 280 3.222173 TGTTGGGTTGAACTGTGCTAT 57.778 42.857 0.00 0.00 0.00 2.97
280 281 3.561143 TGTTGGGTTGAACTGTGCTATT 58.439 40.909 0.00 0.00 0.00 1.73
281 282 3.957497 TGTTGGGTTGAACTGTGCTATTT 59.043 39.130 0.00 0.00 0.00 1.40
282 283 4.202101 TGTTGGGTTGAACTGTGCTATTTG 60.202 41.667 0.00 0.00 0.00 2.32
283 284 3.561143 TGGGTTGAACTGTGCTATTTGT 58.439 40.909 0.00 0.00 0.00 2.83
284 285 4.720046 TGGGTTGAACTGTGCTATTTGTA 58.280 39.130 0.00 0.00 0.00 2.41
285 286 5.321102 TGGGTTGAACTGTGCTATTTGTAT 58.679 37.500 0.00 0.00 0.00 2.29
286 287 5.414454 TGGGTTGAACTGTGCTATTTGTATC 59.586 40.000 0.00 0.00 0.00 2.24
287 288 5.447279 GGGTTGAACTGTGCTATTTGTATCG 60.447 44.000 0.00 0.00 0.00 2.92
288 289 5.121768 GGTTGAACTGTGCTATTTGTATCGT 59.878 40.000 0.00 0.00 0.00 3.73
289 290 6.348213 GGTTGAACTGTGCTATTTGTATCGTT 60.348 38.462 0.00 0.00 0.00 3.85
290 291 6.164408 TGAACTGTGCTATTTGTATCGTTG 57.836 37.500 0.00 0.00 0.00 4.10
291 292 5.929415 TGAACTGTGCTATTTGTATCGTTGA 59.071 36.000 0.00 0.00 0.00 3.18
292 293 6.425417 TGAACTGTGCTATTTGTATCGTTGAA 59.575 34.615 0.00 0.00 0.00 2.69
293 294 6.985188 ACTGTGCTATTTGTATCGTTGAAT 57.015 33.333 0.00 0.00 0.00 2.57
294 295 7.377766 ACTGTGCTATTTGTATCGTTGAATT 57.622 32.000 0.00 0.00 0.00 2.17
295 296 7.816640 ACTGTGCTATTTGTATCGTTGAATTT 58.183 30.769 0.00 0.00 0.00 1.82
296 297 8.296713 ACTGTGCTATTTGTATCGTTGAATTTT 58.703 29.630 0.00 0.00 0.00 1.82
297 298 9.767684 CTGTGCTATTTGTATCGTTGAATTTTA 57.232 29.630 0.00 0.00 0.00 1.52
331 332 9.956797 GTTGTTTCAAATATTGTTCATATGTGC 57.043 29.630 1.90 0.00 34.14 4.57
332 333 9.926158 TTGTTTCAAATATTGTTCATATGTGCT 57.074 25.926 1.90 0.00 34.14 4.40
333 334 9.571810 TGTTTCAAATATTGTTCATATGTGCTC 57.428 29.630 1.90 0.00 34.14 4.26
334 335 9.023967 GTTTCAAATATTGTTCATATGTGCTCC 57.976 33.333 1.90 0.00 34.14 4.70
335 336 6.958255 TCAAATATTGTTCATATGTGCTCCG 58.042 36.000 1.90 0.00 34.14 4.63
336 337 5.947228 AATATTGTTCATATGTGCTCCGG 57.053 39.130 1.90 0.00 0.00 5.14
337 338 1.378531 TTGTTCATATGTGCTCCGGC 58.621 50.000 0.00 0.00 39.26 6.13
338 339 0.541392 TGTTCATATGTGCTCCGGCT 59.459 50.000 0.00 0.00 39.59 5.52
339 340 0.940126 GTTCATATGTGCTCCGGCTG 59.060 55.000 0.00 0.00 39.59 4.85
340 341 0.815213 TTCATATGTGCTCCGGCTGC 60.815 55.000 11.54 11.54 39.59 5.25
341 342 1.227764 CATATGTGCTCCGGCTGCT 60.228 57.895 17.67 3.51 39.59 4.24
342 343 1.070445 ATATGTGCTCCGGCTGCTC 59.930 57.895 17.67 14.90 39.59 4.26
343 344 2.705934 ATATGTGCTCCGGCTGCTCG 62.706 60.000 17.67 1.31 39.59 5.03
395 396 4.250431 GCCCGCGCGTGCAATATT 62.250 61.111 31.74 0.00 42.97 1.28
396 397 2.407210 CCCGCGCGTGCAATATTT 59.593 55.556 29.95 0.00 42.97 1.40
397 398 1.226547 CCCGCGCGTGCAATATTTT 60.227 52.632 29.95 0.00 42.97 1.82
398 399 0.028242 CCCGCGCGTGCAATATTTTA 59.972 50.000 29.95 0.00 42.97 1.52
399 400 1.109296 CCGCGCGTGCAATATTTTAC 58.891 50.000 29.95 0.00 42.97 2.01
400 401 1.530031 CCGCGCGTGCAATATTTTACA 60.530 47.619 29.95 0.00 42.97 2.41
401 402 2.169974 CGCGCGTGCAATATTTTACAA 58.830 42.857 24.19 0.00 42.97 2.41
402 403 2.036904 CGCGCGTGCAATATTTTACAAC 60.037 45.455 24.19 0.00 42.97 3.32
403 404 2.036904 GCGCGTGCAATATTTTACAACG 60.037 45.455 17.66 0.00 42.15 4.10
404 405 2.524302 CGCGTGCAATATTTTACAACGG 59.476 45.455 0.00 0.00 0.00 4.44
405 406 2.277834 GCGTGCAATATTTTACAACGGC 59.722 45.455 0.00 0.00 0.00 5.68
406 407 2.849473 CGTGCAATATTTTACAACGGCC 59.151 45.455 0.00 0.00 0.00 6.13
407 408 2.849473 GTGCAATATTTTACAACGGCCG 59.151 45.455 26.86 26.86 0.00 6.13
408 409 1.849829 GCAATATTTTACAACGGCCGC 59.150 47.619 28.58 0.00 0.00 6.53
409 410 2.478879 GCAATATTTTACAACGGCCGCT 60.479 45.455 28.58 11.40 0.00 5.52
410 411 3.105203 CAATATTTTACAACGGCCGCTG 58.895 45.455 28.58 27.32 0.00 5.18
411 412 1.088306 TATTTTACAACGGCCGCTGG 58.912 50.000 30.39 20.05 0.00 4.85
412 413 0.606944 ATTTTACAACGGCCGCTGGA 60.607 50.000 30.39 21.92 0.00 3.86
413 414 1.231958 TTTTACAACGGCCGCTGGAG 61.232 55.000 30.39 16.11 0.00 3.86
414 415 4.752879 TACAACGGCCGCTGGAGC 62.753 66.667 30.39 0.00 37.78 4.70
441 442 2.466788 GCTGCGCGCAAAAACATG 59.533 55.556 35.50 21.89 38.92 3.21
442 443 2.466788 CTGCGCGCAAAAACATGC 59.533 55.556 35.50 0.00 42.94 4.06
443 444 2.017783 CTGCGCGCAAAAACATGCT 61.018 52.632 35.50 0.00 44.21 3.79
444 445 0.728803 CTGCGCGCAAAAACATGCTA 60.729 50.000 35.50 7.26 44.21 3.49
445 446 0.109365 TGCGCGCAAAAACATGCTAT 60.109 45.000 34.66 0.00 44.21 2.97
446 447 0.991344 GCGCGCAAAAACATGCTATT 59.009 45.000 29.10 0.00 44.21 1.73
447 448 1.389784 GCGCGCAAAAACATGCTATTT 59.610 42.857 29.10 0.00 44.21 1.40
448 449 2.532778 GCGCGCAAAAACATGCTATTTC 60.533 45.455 29.10 0.00 44.21 2.17
449 450 2.283839 CGCGCAAAAACATGCTATTTCG 60.284 45.455 8.75 0.00 44.21 3.46
450 451 2.027926 GCGCAAAAACATGCTATTTCGG 59.972 45.455 0.30 0.00 44.21 4.30
451 452 2.027926 CGCAAAAACATGCTATTTCGGC 59.972 45.455 0.00 0.05 44.21 5.54
452 453 2.992543 GCAAAAACATGCTATTTCGGCA 59.007 40.909 0.00 0.00 43.06 5.69
454 455 4.093261 GCAAAAACATGCTATTTCGGCATT 59.907 37.500 0.00 0.00 46.62 3.56
455 456 5.552807 CAAAAACATGCTATTTCGGCATTG 58.447 37.500 0.00 0.00 46.62 2.82
456 457 4.454728 AAACATGCTATTTCGGCATTGT 57.545 36.364 0.00 0.00 46.62 2.71
457 458 5.574891 AAACATGCTATTTCGGCATTGTA 57.425 34.783 0.00 0.00 46.62 2.41
458 459 5.574891 AACATGCTATTTCGGCATTGTAA 57.425 34.783 0.00 0.00 46.62 2.41
459 460 5.574891 ACATGCTATTTCGGCATTGTAAA 57.425 34.783 0.00 0.00 46.62 2.01
460 461 5.960113 ACATGCTATTTCGGCATTGTAAAA 58.040 33.333 0.00 0.00 46.62 1.52
461 462 6.572519 ACATGCTATTTCGGCATTGTAAAAT 58.427 32.000 0.00 0.00 46.62 1.82
462 463 7.041107 ACATGCTATTTCGGCATTGTAAAATT 58.959 30.769 0.00 0.00 46.62 1.82
463 464 8.194104 ACATGCTATTTCGGCATTGTAAAATTA 58.806 29.630 0.00 0.00 46.62 1.40
464 465 9.195411 CATGCTATTTCGGCATTGTAAAATTAT 57.805 29.630 0.00 0.00 46.62 1.28
465 466 9.762933 ATGCTATTTCGGCATTGTAAAATTATT 57.237 25.926 0.00 0.00 46.62 1.40
466 467 9.593134 TGCTATTTCGGCATTGTAAAATTATTT 57.407 25.926 0.00 0.00 34.56 1.40
472 473 8.967552 TCGGCATTGTAAAATTATTTTAACGT 57.032 26.923 11.17 0.00 36.91 3.99
473 474 8.851416 TCGGCATTGTAAAATTATTTTAACGTG 58.149 29.630 11.17 10.63 36.91 4.49
474 475 8.105135 CGGCATTGTAAAATTATTTTAACGTGG 58.895 33.333 11.17 3.39 36.91 4.94
475 476 9.141400 GGCATTGTAAAATTATTTTAACGTGGA 57.859 29.630 11.17 0.00 36.91 4.02
492 493 7.659652 AACGTGGAATTCAAAAAGAAAAACA 57.340 28.000 7.93 0.00 40.22 2.83
493 494 7.841915 ACGTGGAATTCAAAAAGAAAAACAT 57.158 28.000 7.93 0.00 40.22 2.71
494 495 8.262715 ACGTGGAATTCAAAAAGAAAAACATT 57.737 26.923 7.93 0.00 40.22 2.71
495 496 8.726068 ACGTGGAATTCAAAAAGAAAAACATTT 58.274 25.926 7.93 0.00 40.22 2.32
496 497 9.553418 CGTGGAATTCAAAAAGAAAAACATTTT 57.447 25.926 7.93 0.00 40.22 1.82
505 506 9.798885 CAAAAAGAAAAACATTTTAACGTGTCA 57.201 25.926 0.00 0.00 30.02 3.58
506 507 9.800299 AAAAAGAAAAACATTTTAACGTGTCAC 57.200 25.926 0.00 0.00 29.47 3.67
516 517 2.202046 CGTGTCACGCGATTGCAC 60.202 61.111 15.93 14.73 42.97 4.57
517 518 2.202046 GTGTCACGCGATTGCACG 60.202 61.111 15.93 0.00 42.97 5.34
525 526 2.176546 CGATTGCACGCCTGTTGG 59.823 61.111 0.00 0.00 0.00 3.77
526 527 2.324330 CGATTGCACGCCTGTTGGA 61.324 57.895 0.00 0.00 34.57 3.53
527 528 1.503542 GATTGCACGCCTGTTGGAG 59.496 57.895 0.00 0.00 39.17 3.86
528 529 0.955428 GATTGCACGCCTGTTGGAGA 60.955 55.000 0.00 0.00 36.60 3.71
529 530 0.322816 ATTGCACGCCTGTTGGAGAT 60.323 50.000 0.00 0.00 36.60 2.75
530 531 1.236616 TTGCACGCCTGTTGGAGATG 61.237 55.000 0.00 0.00 36.60 2.90
531 532 3.044059 GCACGCCTGTTGGAGATGC 62.044 63.158 0.00 0.00 36.60 3.91
532 533 1.376424 CACGCCTGTTGGAGATGCT 60.376 57.895 0.00 0.00 36.60 3.79
533 534 1.078848 ACGCCTGTTGGAGATGCTC 60.079 57.895 0.00 0.00 36.60 4.26
534 535 1.220206 CGCCTGTTGGAGATGCTCT 59.780 57.895 0.00 0.00 34.95 4.09
535 536 0.392193 CGCCTGTTGGAGATGCTCTT 60.392 55.000 0.00 0.00 34.95 2.85
536 537 1.134699 CGCCTGTTGGAGATGCTCTTA 60.135 52.381 0.00 0.00 34.95 2.10
537 538 2.559440 GCCTGTTGGAGATGCTCTTAG 58.441 52.381 0.00 0.00 34.57 2.18
538 539 2.169352 GCCTGTTGGAGATGCTCTTAGA 59.831 50.000 0.00 0.00 34.57 2.10
539 540 3.181456 GCCTGTTGGAGATGCTCTTAGAT 60.181 47.826 0.00 0.00 34.57 1.98
540 541 4.378774 CCTGTTGGAGATGCTCTTAGATG 58.621 47.826 0.00 0.00 34.57 2.90
541 542 4.100653 CCTGTTGGAGATGCTCTTAGATGA 59.899 45.833 0.00 0.00 34.57 2.92
542 543 5.221682 CCTGTTGGAGATGCTCTTAGATGAT 60.222 44.000 0.00 0.00 34.57 2.45
543 544 5.851720 TGTTGGAGATGCTCTTAGATGATC 58.148 41.667 0.00 0.00 0.00 2.92
544 545 5.364735 TGTTGGAGATGCTCTTAGATGATCA 59.635 40.000 0.00 0.00 0.00 2.92
545 546 5.725325 TGGAGATGCTCTTAGATGATCAG 57.275 43.478 0.09 0.00 0.00 2.90
546 547 4.527427 TGGAGATGCTCTTAGATGATCAGG 59.473 45.833 0.09 0.00 0.00 3.86
547 548 4.527816 GGAGATGCTCTTAGATGATCAGGT 59.472 45.833 0.09 0.00 0.00 4.00
548 549 5.011943 GGAGATGCTCTTAGATGATCAGGTT 59.988 44.000 0.09 0.00 0.00 3.50
549 550 6.464180 GGAGATGCTCTTAGATGATCAGGTTT 60.464 42.308 0.09 0.00 0.00 3.27
550 551 6.523840 AGATGCTCTTAGATGATCAGGTTTC 58.476 40.000 0.09 0.00 0.00 2.78
551 552 5.946942 TGCTCTTAGATGATCAGGTTTCT 57.053 39.130 0.09 1.41 0.00 2.52
552 553 6.305272 TGCTCTTAGATGATCAGGTTTCTT 57.695 37.500 0.09 0.00 0.00 2.52
553 554 6.111382 TGCTCTTAGATGATCAGGTTTCTTG 58.889 40.000 0.09 0.00 0.00 3.02
554 555 6.112058 GCTCTTAGATGATCAGGTTTCTTGT 58.888 40.000 0.09 0.00 0.00 3.16
555 556 6.036953 GCTCTTAGATGATCAGGTTTCTTGTG 59.963 42.308 0.09 0.00 0.00 3.33
556 557 7.244886 TCTTAGATGATCAGGTTTCTTGTGA 57.755 36.000 0.09 0.00 0.00 3.58
557 558 7.855375 TCTTAGATGATCAGGTTTCTTGTGAT 58.145 34.615 0.09 0.00 33.53 3.06
558 559 7.767659 TCTTAGATGATCAGGTTTCTTGTGATG 59.232 37.037 0.09 0.00 30.93 3.07
559 560 6.058553 AGATGATCAGGTTTCTTGTGATGA 57.941 37.500 0.09 0.00 30.93 2.92
560 561 6.479006 AGATGATCAGGTTTCTTGTGATGAA 58.521 36.000 0.09 0.00 30.93 2.57
561 562 7.117397 AGATGATCAGGTTTCTTGTGATGAAT 58.883 34.615 0.09 0.00 30.93 2.57
562 563 6.748333 TGATCAGGTTTCTTGTGATGAATC 57.252 37.500 0.00 0.00 30.93 2.52
563 564 6.240145 TGATCAGGTTTCTTGTGATGAATCA 58.760 36.000 0.00 0.00 30.93 2.57
564 565 6.888088 TGATCAGGTTTCTTGTGATGAATCAT 59.112 34.615 0.00 0.00 39.30 2.45
565 566 6.505044 TCAGGTTTCTTGTGATGAATCATG 57.495 37.500 0.00 0.00 39.30 3.07
566 567 5.100259 CAGGTTTCTTGTGATGAATCATGC 58.900 41.667 0.00 0.00 39.30 4.06
567 568 4.159135 AGGTTTCTTGTGATGAATCATGCC 59.841 41.667 0.00 0.00 39.30 4.40
568 569 4.082081 GGTTTCTTGTGATGAATCATGCCA 60.082 41.667 0.00 0.00 39.30 4.92
569 570 5.472148 GTTTCTTGTGATGAATCATGCCAA 58.528 37.500 0.00 2.43 39.30 4.52
570 571 5.725325 TTCTTGTGATGAATCATGCCAAA 57.275 34.783 0.00 0.00 39.30 3.28
571 572 5.063180 TCTTGTGATGAATCATGCCAAAC 57.937 39.130 0.00 0.00 39.30 2.93
572 573 3.872511 TGTGATGAATCATGCCAAACC 57.127 42.857 0.00 0.00 39.30 3.27
573 574 2.164017 TGTGATGAATCATGCCAAACCG 59.836 45.455 0.00 0.00 39.30 4.44
574 575 1.750206 TGATGAATCATGCCAAACCGG 59.250 47.619 0.00 0.00 38.11 5.28
575 576 2.023673 GATGAATCATGCCAAACCGGA 58.976 47.619 9.46 0.00 36.56 5.14
576 577 1.462616 TGAATCATGCCAAACCGGAG 58.537 50.000 9.46 0.00 36.56 4.63
577 578 1.271871 TGAATCATGCCAAACCGGAGT 60.272 47.619 9.46 0.00 36.56 3.85
578 579 1.133025 GAATCATGCCAAACCGGAGTG 59.867 52.381 9.46 5.12 36.56 3.51
579 580 0.327924 ATCATGCCAAACCGGAGTGA 59.672 50.000 9.46 1.44 36.56 3.41
580 581 0.321564 TCATGCCAAACCGGAGTGAG 60.322 55.000 9.46 0.99 36.56 3.51
581 582 1.675641 ATGCCAAACCGGAGTGAGC 60.676 57.895 9.46 11.43 36.56 4.26
582 583 2.281484 GCCAAACCGGAGTGAGCA 60.281 61.111 9.46 0.00 36.56 4.26
583 584 1.896660 GCCAAACCGGAGTGAGCAA 60.897 57.895 9.46 0.00 36.56 3.91
584 585 1.452145 GCCAAACCGGAGTGAGCAAA 61.452 55.000 9.46 0.00 36.56 3.68
585 586 0.593128 CCAAACCGGAGTGAGCAAAG 59.407 55.000 9.46 0.00 36.56 2.77
586 587 0.593128 CAAACCGGAGTGAGCAAAGG 59.407 55.000 9.46 0.00 0.00 3.11
587 588 1.172812 AAACCGGAGTGAGCAAAGGC 61.173 55.000 9.46 0.00 41.61 4.35
591 592 1.968540 GGAGTGAGCAAAGGCGCTT 60.969 57.895 7.64 0.00 44.01 4.68
592 593 1.208614 GAGTGAGCAAAGGCGCTTG 59.791 57.895 7.64 6.13 44.01 4.01
631 632 5.924475 AAGCTAAGTGTATGTGTGTGAAC 57.076 39.130 0.00 0.00 0.00 3.18
632 633 5.215252 AGCTAAGTGTATGTGTGTGAACT 57.785 39.130 0.00 0.00 0.00 3.01
633 634 4.991056 AGCTAAGTGTATGTGTGTGAACTG 59.009 41.667 0.00 0.00 0.00 3.16
634 635 4.988540 GCTAAGTGTATGTGTGTGAACTGA 59.011 41.667 0.00 0.00 0.00 3.41
635 636 5.465390 GCTAAGTGTATGTGTGTGAACTGAA 59.535 40.000 0.00 0.00 0.00 3.02
636 637 5.734855 AAGTGTATGTGTGTGAACTGAAC 57.265 39.130 0.00 0.00 0.00 3.18
637 638 3.802139 AGTGTATGTGTGTGAACTGAACG 59.198 43.478 0.00 0.00 0.00 3.95
638 639 3.554324 GTGTATGTGTGTGAACTGAACGT 59.446 43.478 0.00 0.00 0.00 3.99
639 640 3.799963 TGTATGTGTGTGAACTGAACGTC 59.200 43.478 0.00 0.00 0.00 4.34
640 641 2.665649 TGTGTGTGAACTGAACGTCT 57.334 45.000 0.00 0.00 0.00 4.18
668 4376 2.553086 GTGTCTGTACCGTGTTTGGAA 58.447 47.619 0.00 0.00 0.00 3.53
672 4380 4.142643 TGTCTGTACCGTGTTTGGAAAAAC 60.143 41.667 0.00 0.00 0.00 2.43
676 4384 5.819059 TGTACCGTGTTTGGAAAAACATAC 58.181 37.500 7.24 6.88 43.59 2.39
692 4405 7.739498 AAAACATACCAGACGATACAAAGTT 57.261 32.000 0.00 0.00 0.00 2.66
851 4568 2.141122 TAAACCACCCGACGACGACC 62.141 60.000 9.28 0.00 42.66 4.79
865 4593 0.535102 ACGACCTGCTCAAACCCAAG 60.535 55.000 0.00 0.00 0.00 3.61
1788 5576 1.889530 GCCAGGTCTACAGCGAGGTT 61.890 60.000 0.00 0.00 0.00 3.50
2073 5861 4.301505 GCGATTGGCAAGAGGTCA 57.698 55.556 5.96 0.00 42.87 4.02
2115 5907 0.179121 TTGGTATGTACGAGGCGCTG 60.179 55.000 7.64 0.00 0.00 5.18
2191 5983 1.617839 AAGGAAGAGGCAGAGGGGG 60.618 63.158 0.00 0.00 0.00 5.40
2331 6131 7.096230 CGTTATGTCATGAATTATGTGCGACTA 60.096 37.037 0.00 0.00 38.01 2.59
2385 6185 2.037121 TCTTGATGGTTGCGAGACTGAA 59.963 45.455 0.00 0.00 0.00 3.02
2400 6200 0.897621 CTGAACTGGAAAATGGGGGC 59.102 55.000 0.00 0.00 0.00 5.80
2607 6407 4.215742 TGGATCCGTAAGCGCCGG 62.216 66.667 16.27 16.27 46.83 6.13
2616 6416 2.363975 TAAGCGCCGGGGTCAGATT 61.364 57.895 20.83 9.77 0.00 2.40
2901 6708 2.443016 CGAGGGCAGCTAGAGGGT 60.443 66.667 0.00 0.00 0.00 4.34
3085 6892 6.228258 TGTTCATATCGGTTTATAGAAGGCC 58.772 40.000 0.00 0.00 0.00 5.19
3171 7094 6.151648 CCTTCTACCTTGCAATTCAATTGAGA 59.848 38.462 14.65 3.75 42.83 3.27
3329 7254 4.120589 CCCTCGTATTTAGGCTCAAACTC 58.879 47.826 0.00 0.00 32.34 3.01
3807 7733 3.589735 TGGGCATAGAAACTTAGGAACCA 59.410 43.478 0.00 0.00 0.00 3.67
3825 7751 2.152830 CCAAATACCGAACCGAAACCA 58.847 47.619 0.00 0.00 0.00 3.67
3826 7752 2.750712 CCAAATACCGAACCGAAACCAT 59.249 45.455 0.00 0.00 0.00 3.55
3958 7884 0.108329 AGAAACCGACCTGTATGGCG 60.108 55.000 0.00 0.00 40.22 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.208535 TGGCGGTCCTCGTTGATTATT 59.791 47.619 0.00 0.00 41.72 1.40
1 2 0.828022 TGGCGGTCCTCGTTGATTAT 59.172 50.000 0.00 0.00 41.72 1.28
2 3 0.108520 GTGGCGGTCCTCGTTGATTA 60.109 55.000 0.00 0.00 41.72 1.75
3 4 1.375523 GTGGCGGTCCTCGTTGATT 60.376 57.895 0.00 0.00 41.72 2.57
4 5 2.264794 GTGGCGGTCCTCGTTGAT 59.735 61.111 0.00 0.00 41.72 2.57
5 6 4.351938 CGTGGCGGTCCTCGTTGA 62.352 66.667 5.26 0.00 42.56 3.18
6 7 3.851845 TTCGTGGCGGTCCTCGTTG 62.852 63.158 10.87 0.00 46.27 4.10
7 8 3.608662 TTCGTGGCGGTCCTCGTT 61.609 61.111 10.87 0.00 46.27 3.85
8 9 4.353437 GTTCGTGGCGGTCCTCGT 62.353 66.667 10.87 0.00 46.27 4.18
10 11 2.737376 GTGTTCGTGGCGGTCCTC 60.737 66.667 0.00 0.00 0.00 3.71
11 12 3.231736 AGTGTTCGTGGCGGTCCT 61.232 61.111 0.00 0.00 0.00 3.85
12 13 2.424705 TACAGTGTTCGTGGCGGTCC 62.425 60.000 0.00 0.00 0.00 4.46
13 14 1.007038 TACAGTGTTCGTGGCGGTC 60.007 57.895 0.00 0.00 0.00 4.79
14 15 1.006571 CTACAGTGTTCGTGGCGGT 60.007 57.895 0.00 0.00 0.00 5.68
15 16 1.736645 CCTACAGTGTTCGTGGCGG 60.737 63.158 0.00 0.00 0.00 6.13
16 17 1.007336 GTCCTACAGTGTTCGTGGCG 61.007 60.000 0.00 0.00 0.00 5.69
17 18 1.007336 CGTCCTACAGTGTTCGTGGC 61.007 60.000 0.00 0.00 0.00 5.01
18 19 0.313043 ACGTCCTACAGTGTTCGTGG 59.687 55.000 0.00 0.00 0.00 4.94
19 20 1.682982 GACGTCCTACAGTGTTCGTG 58.317 55.000 3.51 1.80 0.00 4.35
20 21 0.236711 CGACGTCCTACAGTGTTCGT 59.763 55.000 10.58 8.06 0.00 3.85
21 22 1.063951 GCGACGTCCTACAGTGTTCG 61.064 60.000 10.58 4.62 0.00 3.95
22 23 0.240411 AGCGACGTCCTACAGTGTTC 59.760 55.000 10.58 0.00 0.00 3.18
23 24 0.039437 CAGCGACGTCCTACAGTGTT 60.039 55.000 10.58 0.00 0.00 3.32
24 25 1.170919 ACAGCGACGTCCTACAGTGT 61.171 55.000 10.58 0.00 0.00 3.55
25 26 0.454620 GACAGCGACGTCCTACAGTG 60.455 60.000 10.58 1.23 0.00 3.66
26 27 1.874562 GACAGCGACGTCCTACAGT 59.125 57.895 10.58 2.77 0.00 3.55
27 28 1.226046 CGACAGCGACGTCCTACAG 60.226 63.158 10.58 0.00 40.82 2.74
28 29 1.632948 CTCGACAGCGACGTCCTACA 61.633 60.000 10.58 0.00 42.51 2.74
29 30 1.060622 CTCGACAGCGACGTCCTAC 59.939 63.158 10.58 0.00 42.51 3.18
30 31 2.104859 CCTCGACAGCGACGTCCTA 61.105 63.158 10.58 0.00 42.51 2.94
31 32 3.432588 CCTCGACAGCGACGTCCT 61.433 66.667 10.58 5.32 42.51 3.85
32 33 3.384014 CTCCTCGACAGCGACGTCC 62.384 68.421 10.58 2.76 42.51 4.79
33 34 2.098680 CTCCTCGACAGCGACGTC 59.901 66.667 5.18 5.18 42.51 4.34
34 35 3.432588 CCTCCTCGACAGCGACGT 61.433 66.667 0.00 0.00 42.51 4.34
35 36 4.838486 GCCTCCTCGACAGCGACG 62.838 72.222 0.00 0.00 42.51 5.12
36 37 4.500116 GGCCTCCTCGACAGCGAC 62.500 72.222 0.00 0.00 42.51 5.19
37 38 4.742649 AGGCCTCCTCGACAGCGA 62.743 66.667 0.00 0.00 45.71 4.93
38 39 3.708220 GAAGGCCTCCTCGACAGCG 62.708 68.421 5.23 0.00 39.35 5.18
39 40 2.185608 GAAGGCCTCCTCGACAGC 59.814 66.667 5.23 0.00 30.89 4.40
40 41 1.515020 CAGAAGGCCTCCTCGACAG 59.485 63.158 5.23 0.00 30.89 3.51
41 42 1.984570 CCAGAAGGCCTCCTCGACA 60.985 63.158 5.23 0.00 30.89 4.35
42 43 2.726351 CCCAGAAGGCCTCCTCGAC 61.726 68.421 5.23 0.00 30.89 4.20
43 44 2.364317 CCCAGAAGGCCTCCTCGA 60.364 66.667 5.23 0.00 30.89 4.04
44 45 2.685380 ACCCAGAAGGCCTCCTCG 60.685 66.667 5.23 0.00 40.58 4.63
45 46 2.674220 CCACCCAGAAGGCCTCCTC 61.674 68.421 5.23 0.00 40.58 3.71
46 47 2.612115 CCACCCAGAAGGCCTCCT 60.612 66.667 5.23 0.00 40.58 3.69
47 48 2.610859 TCCACCCAGAAGGCCTCC 60.611 66.667 5.23 0.00 40.58 4.30
48 49 1.613630 TCTCCACCCAGAAGGCCTC 60.614 63.158 5.23 0.00 40.58 4.70
49 50 1.614824 CTCTCCACCCAGAAGGCCT 60.615 63.158 0.00 0.00 40.58 5.19
50 51 2.674220 CCTCTCCACCCAGAAGGCC 61.674 68.421 0.00 0.00 40.58 5.19
51 52 1.613630 TCCTCTCCACCCAGAAGGC 60.614 63.158 0.00 0.00 40.58 4.35
52 53 0.980231 CCTCCTCTCCACCCAGAAGG 60.980 65.000 0.00 0.00 43.78 3.46
53 54 0.980231 CCCTCCTCTCCACCCAGAAG 60.980 65.000 0.00 0.00 0.00 2.85
54 55 1.081092 CCCTCCTCTCCACCCAGAA 59.919 63.158 0.00 0.00 0.00 3.02
55 56 2.780693 CCCTCCTCTCCACCCAGA 59.219 66.667 0.00 0.00 0.00 3.86
56 57 3.086600 GCCCTCCTCTCCACCCAG 61.087 72.222 0.00 0.00 0.00 4.45
57 58 3.498961 TTGCCCTCCTCTCCACCCA 62.499 63.158 0.00 0.00 0.00 4.51
58 59 2.203549 CTTTGCCCTCCTCTCCACCC 62.204 65.000 0.00 0.00 0.00 4.61
59 60 1.301293 CTTTGCCCTCCTCTCCACC 59.699 63.158 0.00 0.00 0.00 4.61
60 61 1.377856 GCTTTGCCCTCCTCTCCAC 60.378 63.158 0.00 0.00 0.00 4.02
61 62 2.959484 CGCTTTGCCCTCCTCTCCA 61.959 63.158 0.00 0.00 0.00 3.86
62 63 2.124942 CGCTTTGCCCTCCTCTCC 60.125 66.667 0.00 0.00 0.00 3.71
63 64 1.153469 CTCGCTTTGCCCTCCTCTC 60.153 63.158 0.00 0.00 0.00 3.20
64 65 2.985456 CTCGCTTTGCCCTCCTCT 59.015 61.111 0.00 0.00 0.00 3.69
65 66 2.821810 GCTCGCTTTGCCCTCCTC 60.822 66.667 0.00 0.00 0.00 3.71
66 67 4.416738 GGCTCGCTTTGCCCTCCT 62.417 66.667 0.00 0.00 44.32 3.69
87 88 4.681978 ACGCCTGTCTGCCCGTTC 62.682 66.667 0.00 0.00 0.00 3.95
88 89 4.988598 CACGCCTGTCTGCCCGTT 62.989 66.667 0.00 0.00 0.00 4.44
107 108 3.733344 TATCGCCAGTGCCTTCCGC 62.733 63.158 0.00 0.00 38.31 5.54
108 109 1.592669 CTATCGCCAGTGCCTTCCG 60.593 63.158 0.00 0.00 0.00 4.30
109 110 1.889573 GCTATCGCCAGTGCCTTCC 60.890 63.158 0.00 0.00 0.00 3.46
110 111 2.240500 CGCTATCGCCAGTGCCTTC 61.241 63.158 0.00 0.00 0.00 3.46
111 112 2.202932 CGCTATCGCCAGTGCCTT 60.203 61.111 0.00 0.00 0.00 4.35
130 131 1.598130 GCTTGTCCCAGTTCGCACT 60.598 57.895 0.00 0.00 0.00 4.40
131 132 2.946762 GCTTGTCCCAGTTCGCAC 59.053 61.111 0.00 0.00 0.00 5.34
132 133 2.664851 CGCTTGTCCCAGTTCGCA 60.665 61.111 0.00 0.00 0.00 5.10
133 134 2.665185 ACGCTTGTCCCAGTTCGC 60.665 61.111 0.00 0.00 0.00 4.70
134 135 2.372690 CGACGCTTGTCCCAGTTCG 61.373 63.158 0.00 0.00 39.56 3.95
135 136 1.006571 TCGACGCTTGTCCCAGTTC 60.007 57.895 0.00 0.00 39.56 3.01
136 137 1.300697 GTCGACGCTTGTCCCAGTT 60.301 57.895 0.00 0.00 39.56 3.16
137 138 2.338984 GTCGACGCTTGTCCCAGT 59.661 61.111 0.00 0.00 39.56 4.00
138 139 2.432628 GGTCGACGCTTGTCCCAG 60.433 66.667 9.92 0.00 39.56 4.45
139 140 2.430382 GAAGGTCGACGCTTGTCCCA 62.430 60.000 19.69 0.00 39.56 4.37
140 141 1.737008 GAAGGTCGACGCTTGTCCC 60.737 63.158 19.69 0.57 39.56 4.46
141 142 2.087009 CGAAGGTCGACGCTTGTCC 61.087 63.158 19.69 8.28 43.74 4.02
142 143 1.081641 TCGAAGGTCGACGCTTGTC 60.082 57.895 19.69 8.97 44.82 3.18
143 144 3.036577 TCGAAGGTCGACGCTTGT 58.963 55.556 19.69 1.93 44.82 3.16
151 152 1.385743 GATCGTTGTTGTCGAAGGTCG 59.614 52.381 0.00 0.00 40.61 4.79
152 153 1.725164 GGATCGTTGTTGTCGAAGGTC 59.275 52.381 0.00 0.00 40.61 3.85
153 154 1.343465 AGGATCGTTGTTGTCGAAGGT 59.657 47.619 0.00 0.00 40.61 3.50
154 155 1.993370 GAGGATCGTTGTTGTCGAAGG 59.007 52.381 0.00 0.00 40.61 3.46
168 169 1.364171 CGTCATCCCACCGAGGATC 59.636 63.158 0.00 0.00 45.21 3.36
170 171 3.458163 GCGTCATCCCACCGAGGA 61.458 66.667 0.00 0.00 41.22 3.71
171 172 4.873129 CGCGTCATCCCACCGAGG 62.873 72.222 0.00 0.00 37.03 4.63
172 173 3.642778 AACGCGTCATCCCACCGAG 62.643 63.158 14.44 0.00 0.00 4.63
173 174 3.229156 AAACGCGTCATCCCACCGA 62.229 57.895 14.44 0.00 0.00 4.69
174 175 2.736682 GAAACGCGTCATCCCACCG 61.737 63.158 14.44 0.00 0.00 4.94
175 176 0.953960 AAGAAACGCGTCATCCCACC 60.954 55.000 14.44 0.00 0.00 4.61
176 177 0.872388 AAAGAAACGCGTCATCCCAC 59.128 50.000 14.44 0.00 0.00 4.61
177 178 1.153353 GAAAGAAACGCGTCATCCCA 58.847 50.000 14.44 0.00 0.00 4.37
178 179 0.094730 CGAAAGAAACGCGTCATCCC 59.905 55.000 14.44 5.97 0.00 3.85
179 180 0.788391 ACGAAAGAAACGCGTCATCC 59.212 50.000 14.44 1.71 31.98 3.51
184 185 1.299316 TCCGACGAAAGAAACGCGT 60.299 52.632 5.58 5.58 41.45 6.01
185 186 1.127225 GTCCGACGAAAGAAACGCG 59.873 57.895 3.53 3.53 0.00 6.01
186 187 1.689959 TAGTCCGACGAAAGAAACGC 58.310 50.000 0.00 0.00 0.00 4.84
187 188 3.788163 GGTATAGTCCGACGAAAGAAACG 59.212 47.826 0.00 0.00 0.00 3.60
188 189 4.560427 GTGGTATAGTCCGACGAAAGAAAC 59.440 45.833 0.00 0.00 0.00 2.78
189 190 4.380867 GGTGGTATAGTCCGACGAAAGAAA 60.381 45.833 0.00 0.00 0.00 2.52
190 191 3.129287 GGTGGTATAGTCCGACGAAAGAA 59.871 47.826 0.00 0.00 0.00 2.52
191 192 2.684881 GGTGGTATAGTCCGACGAAAGA 59.315 50.000 0.00 0.00 0.00 2.52
192 193 2.540361 CGGTGGTATAGTCCGACGAAAG 60.540 54.545 0.00 0.00 46.05 2.62
193 194 1.401552 CGGTGGTATAGTCCGACGAAA 59.598 52.381 0.00 0.00 46.05 3.46
194 195 1.016627 CGGTGGTATAGTCCGACGAA 58.983 55.000 0.00 0.00 46.05 3.85
195 196 0.177836 TCGGTGGTATAGTCCGACGA 59.822 55.000 0.00 2.67 46.54 4.20
196 197 0.585357 CTCGGTGGTATAGTCCGACG 59.415 60.000 8.25 0.00 46.54 5.12
197 198 0.950116 CCTCGGTGGTATAGTCCGAC 59.050 60.000 8.25 0.00 46.54 4.79
199 200 1.236628 CTCCTCGGTGGTATAGTCCG 58.763 60.000 0.00 0.00 44.76 4.79
200 201 1.144503 TCCTCCTCGGTGGTATAGTCC 59.855 57.143 4.15 0.00 37.07 3.85
201 202 2.506444 CTCCTCCTCGGTGGTATAGTC 58.494 57.143 4.15 0.00 37.07 2.59
202 203 1.145325 CCTCCTCCTCGGTGGTATAGT 59.855 57.143 4.15 0.00 40.79 2.12
203 204 1.912417 CCTCCTCCTCGGTGGTATAG 58.088 60.000 4.15 0.00 40.79 1.31
209 210 2.045242 TCGACCTCCTCCTCGGTG 60.045 66.667 0.00 0.00 32.62 4.94
210 211 2.045143 GTCGACCTCCTCCTCGGT 60.045 66.667 3.51 0.00 35.90 4.69
211 212 1.820481 GAGTCGACCTCCTCCTCGG 60.820 68.421 13.01 0.00 33.79 4.63
212 213 2.174969 CGAGTCGACCTCCTCCTCG 61.175 68.421 13.01 9.34 39.02 4.63
213 214 1.820481 CCGAGTCGACCTCCTCCTC 60.820 68.421 15.64 0.00 36.82 3.71
214 215 2.260088 CTCCGAGTCGACCTCCTCCT 62.260 65.000 15.64 0.00 36.82 3.69
215 216 1.820481 CTCCGAGTCGACCTCCTCC 60.820 68.421 15.64 0.00 36.82 4.30
216 217 0.177604 TACTCCGAGTCGACCTCCTC 59.822 60.000 15.64 1.83 36.82 3.71
217 218 0.178533 CTACTCCGAGTCGACCTCCT 59.821 60.000 15.64 0.00 36.82 3.69
218 219 0.107752 ACTACTCCGAGTCGACCTCC 60.108 60.000 15.64 0.76 36.82 4.30
219 220 1.736612 AACTACTCCGAGTCGACCTC 58.263 55.000 15.64 8.35 36.80 3.85
220 221 2.083002 GAAACTACTCCGAGTCGACCT 58.917 52.381 15.64 0.00 0.00 3.85
221 222 2.083002 AGAAACTACTCCGAGTCGACC 58.917 52.381 15.64 2.76 0.00 4.79
222 223 3.932089 ACTAGAAACTACTCCGAGTCGAC 59.068 47.826 15.64 7.70 0.00 4.20
223 224 4.199432 ACTAGAAACTACTCCGAGTCGA 57.801 45.455 15.64 0.00 0.00 4.20
224 225 5.231991 GTCTACTAGAAACTACTCCGAGTCG 59.768 48.000 3.74 5.29 0.00 4.18
225 226 6.340522 AGTCTACTAGAAACTACTCCGAGTC 58.659 44.000 3.74 0.00 0.00 3.36
226 227 6.298441 AGTCTACTAGAAACTACTCCGAGT 57.702 41.667 6.25 6.25 0.00 4.18
227 228 7.491682 ACTAGTCTACTAGAAACTACTCCGAG 58.508 42.308 21.12 0.00 46.80 4.63
228 229 7.416964 ACTAGTCTACTAGAAACTACTCCGA 57.583 40.000 21.12 0.00 46.80 4.55
229 230 8.389603 CAAACTAGTCTACTAGAAACTACTCCG 58.610 40.741 21.12 0.00 46.80 4.63
230 231 9.230122 ACAAACTAGTCTACTAGAAACTACTCC 57.770 37.037 21.12 0.00 46.80 3.85
232 233 9.790344 TCACAAACTAGTCTACTAGAAACTACT 57.210 33.333 21.12 0.00 46.80 2.57
235 236 9.080097 ACATCACAAACTAGTCTACTAGAAACT 57.920 33.333 21.12 0.00 46.80 2.66
236 237 9.694137 AACATCACAAACTAGTCTACTAGAAAC 57.306 33.333 21.12 0.00 46.80 2.78
237 238 9.692749 CAACATCACAAACTAGTCTACTAGAAA 57.307 33.333 21.12 3.34 46.80 2.52
238 239 8.304596 CCAACATCACAAACTAGTCTACTAGAA 58.695 37.037 21.12 3.05 46.80 2.10
239 240 7.093902 CCCAACATCACAAACTAGTCTACTAGA 60.094 40.741 21.12 0.00 46.80 2.43
241 242 6.495872 ACCCAACATCACAAACTAGTCTACTA 59.504 38.462 0.00 0.00 0.00 1.82
242 243 5.307196 ACCCAACATCACAAACTAGTCTACT 59.693 40.000 0.00 0.00 0.00 2.57
243 244 5.548406 ACCCAACATCACAAACTAGTCTAC 58.452 41.667 0.00 0.00 0.00 2.59
244 245 5.818678 ACCCAACATCACAAACTAGTCTA 57.181 39.130 0.00 0.00 0.00 2.59
245 246 4.706842 ACCCAACATCACAAACTAGTCT 57.293 40.909 0.00 0.00 0.00 3.24
246 247 4.819630 TCAACCCAACATCACAAACTAGTC 59.180 41.667 0.00 0.00 0.00 2.59
247 248 4.787551 TCAACCCAACATCACAAACTAGT 58.212 39.130 0.00 0.00 0.00 2.57
248 249 5.299279 AGTTCAACCCAACATCACAAACTAG 59.701 40.000 0.00 0.00 0.00 2.57
249 250 5.067153 CAGTTCAACCCAACATCACAAACTA 59.933 40.000 0.00 0.00 0.00 2.24
250 251 4.023291 AGTTCAACCCAACATCACAAACT 58.977 39.130 0.00 0.00 0.00 2.66
251 252 4.111916 CAGTTCAACCCAACATCACAAAC 58.888 43.478 0.00 0.00 0.00 2.93
252 253 3.766591 ACAGTTCAACCCAACATCACAAA 59.233 39.130 0.00 0.00 0.00 2.83
253 254 3.130164 CACAGTTCAACCCAACATCACAA 59.870 43.478 0.00 0.00 0.00 3.33
254 255 2.687425 CACAGTTCAACCCAACATCACA 59.313 45.455 0.00 0.00 0.00 3.58
255 256 2.543653 GCACAGTTCAACCCAACATCAC 60.544 50.000 0.00 0.00 0.00 3.06
256 257 1.680735 GCACAGTTCAACCCAACATCA 59.319 47.619 0.00 0.00 0.00 3.07
257 258 1.956477 AGCACAGTTCAACCCAACATC 59.044 47.619 0.00 0.00 0.00 3.06
258 259 2.071778 AGCACAGTTCAACCCAACAT 57.928 45.000 0.00 0.00 0.00 2.71
259 260 2.719531 TAGCACAGTTCAACCCAACA 57.280 45.000 0.00 0.00 0.00 3.33
260 261 4.202111 ACAAATAGCACAGTTCAACCCAAC 60.202 41.667 0.00 0.00 0.00 3.77
261 262 3.957497 ACAAATAGCACAGTTCAACCCAA 59.043 39.130 0.00 0.00 0.00 4.12
262 263 3.561143 ACAAATAGCACAGTTCAACCCA 58.439 40.909 0.00 0.00 0.00 4.51
263 264 5.447279 CGATACAAATAGCACAGTTCAACCC 60.447 44.000 0.00 0.00 0.00 4.11
264 265 5.121768 ACGATACAAATAGCACAGTTCAACC 59.878 40.000 0.00 0.00 0.00 3.77
265 266 6.165659 ACGATACAAATAGCACAGTTCAAC 57.834 37.500 0.00 0.00 0.00 3.18
266 267 6.425417 TCAACGATACAAATAGCACAGTTCAA 59.575 34.615 0.00 0.00 0.00 2.69
267 268 5.929415 TCAACGATACAAATAGCACAGTTCA 59.071 36.000 0.00 0.00 0.00 3.18
268 269 6.403333 TCAACGATACAAATAGCACAGTTC 57.597 37.500 0.00 0.00 0.00 3.01
269 270 6.795098 TTCAACGATACAAATAGCACAGTT 57.205 33.333 0.00 0.00 0.00 3.16
270 271 6.985188 ATTCAACGATACAAATAGCACAGT 57.015 33.333 0.00 0.00 0.00 3.55
271 272 8.673626 AAAATTCAACGATACAAATAGCACAG 57.326 30.769 0.00 0.00 0.00 3.66
305 306 9.956797 GCACATATGAACAATATTTGAAACAAC 57.043 29.630 10.38 0.00 32.70 3.32
306 307 9.926158 AGCACATATGAACAATATTTGAAACAA 57.074 25.926 10.38 0.00 32.70 2.83
307 308 9.571810 GAGCACATATGAACAATATTTGAAACA 57.428 29.630 10.38 0.00 32.70 2.83
308 309 9.023967 GGAGCACATATGAACAATATTTGAAAC 57.976 33.333 10.38 0.00 32.70 2.78
309 310 7.914871 CGGAGCACATATGAACAATATTTGAAA 59.085 33.333 10.38 0.00 32.70 2.69
310 311 7.416817 CGGAGCACATATGAACAATATTTGAA 58.583 34.615 10.38 0.00 32.70 2.69
311 312 6.017192 CCGGAGCACATATGAACAATATTTGA 60.017 38.462 10.38 0.00 32.70 2.69
312 313 6.144854 CCGGAGCACATATGAACAATATTTG 58.855 40.000 10.38 0.00 33.68 2.32
313 314 5.278463 GCCGGAGCACATATGAACAATATTT 60.278 40.000 5.05 0.00 39.53 1.40
314 315 4.216257 GCCGGAGCACATATGAACAATATT 59.784 41.667 5.05 0.00 39.53 1.28
315 316 3.753272 GCCGGAGCACATATGAACAATAT 59.247 43.478 5.05 0.00 39.53 1.28
316 317 3.138304 GCCGGAGCACATATGAACAATA 58.862 45.455 5.05 0.00 39.53 1.90
317 318 1.949525 GCCGGAGCACATATGAACAAT 59.050 47.619 5.05 0.00 39.53 2.71
318 319 1.065491 AGCCGGAGCACATATGAACAA 60.065 47.619 5.05 0.00 43.56 2.83
319 320 0.541392 AGCCGGAGCACATATGAACA 59.459 50.000 5.05 0.00 43.56 3.18
320 321 0.940126 CAGCCGGAGCACATATGAAC 59.060 55.000 5.05 0.40 43.56 3.18
321 322 0.815213 GCAGCCGGAGCACATATGAA 60.815 55.000 5.05 0.00 43.56 2.57
322 323 1.227645 GCAGCCGGAGCACATATGA 60.228 57.895 5.05 0.00 43.56 2.15
323 324 1.226686 GAGCAGCCGGAGCACATATG 61.227 60.000 19.59 0.00 43.56 1.78
324 325 1.070445 GAGCAGCCGGAGCACATAT 59.930 57.895 19.59 0.38 43.56 1.78
325 326 2.501128 GAGCAGCCGGAGCACATA 59.499 61.111 19.59 0.00 43.56 2.29
326 327 4.827087 CGAGCAGCCGGAGCACAT 62.827 66.667 19.59 1.09 43.56 3.21
379 380 0.028242 TAAAATATTGCACGCGCGGG 59.972 50.000 35.22 33.30 42.97 6.13
380 381 1.109296 GTAAAATATTGCACGCGCGG 58.891 50.000 35.22 23.25 42.97 6.46
381 382 1.804062 TGTAAAATATTGCACGCGCG 58.196 45.000 30.96 30.96 42.97 6.86
382 383 2.036904 CGTTGTAAAATATTGCACGCGC 60.037 45.455 5.73 0.00 39.24 6.86
383 384 2.524302 CCGTTGTAAAATATTGCACGCG 59.476 45.455 3.53 3.53 30.42 6.01
384 385 2.277834 GCCGTTGTAAAATATTGCACGC 59.722 45.455 0.00 0.00 30.42 5.34
385 386 2.849473 GGCCGTTGTAAAATATTGCACG 59.151 45.455 0.00 0.00 30.42 5.34
386 387 2.849473 CGGCCGTTGTAAAATATTGCAC 59.151 45.455 19.50 0.00 30.42 4.57
387 388 2.732597 GCGGCCGTTGTAAAATATTGCA 60.733 45.455 28.70 0.00 0.00 4.08
388 389 1.849829 GCGGCCGTTGTAAAATATTGC 59.150 47.619 28.70 0.00 0.00 3.56
389 390 3.105203 CAGCGGCCGTTGTAAAATATTG 58.895 45.455 31.24 3.99 0.00 1.90
390 391 2.098443 CCAGCGGCCGTTGTAAAATATT 59.902 45.455 35.18 2.49 0.00 1.28
391 392 1.673920 CCAGCGGCCGTTGTAAAATAT 59.326 47.619 35.18 4.28 0.00 1.28
392 393 1.088306 CCAGCGGCCGTTGTAAAATA 58.912 50.000 35.18 0.00 0.00 1.40
393 394 0.606944 TCCAGCGGCCGTTGTAAAAT 60.607 50.000 35.18 6.81 0.00 1.82
394 395 1.227883 TCCAGCGGCCGTTGTAAAA 60.228 52.632 35.18 18.02 0.00 1.52
395 396 1.669760 CTCCAGCGGCCGTTGTAAA 60.670 57.895 35.18 21.31 0.00 2.01
396 397 2.047655 CTCCAGCGGCCGTTGTAA 60.048 61.111 35.18 23.58 0.00 2.41
397 398 4.752879 GCTCCAGCGGCCGTTGTA 62.753 66.667 35.18 22.99 0.00 2.41
425 426 2.466788 GCATGTTTTTGCGCGCAG 59.533 55.556 34.25 21.27 32.06 5.18
431 432 2.992543 TGCCGAAATAGCATGTTTTTGC 59.007 40.909 0.00 1.60 43.09 3.68
440 441 9.593134 AAATAATTTTACAATGCCGAAATAGCA 57.407 25.926 0.00 0.00 45.94 3.49
446 447 9.408069 ACGTTAAAATAATTTTACAATGCCGAA 57.592 25.926 0.00 0.00 35.03 4.30
447 448 8.851416 CACGTTAAAATAATTTTACAATGCCGA 58.149 29.630 0.00 0.00 35.03 5.54
448 449 8.105135 CCACGTTAAAATAATTTTACAATGCCG 58.895 33.333 0.00 0.00 35.03 5.69
449 450 9.141400 TCCACGTTAAAATAATTTTACAATGCC 57.859 29.630 0.00 0.00 35.03 4.40
466 467 9.204570 TGTTTTTCTTTTTGAATTCCACGTTAA 57.795 25.926 2.27 0.00 34.24 2.01
467 468 8.758633 TGTTTTTCTTTTTGAATTCCACGTTA 57.241 26.923 2.27 0.00 34.24 3.18
468 469 7.659652 TGTTTTTCTTTTTGAATTCCACGTT 57.340 28.000 2.27 0.00 34.24 3.99
469 470 7.841915 ATGTTTTTCTTTTTGAATTCCACGT 57.158 28.000 2.27 0.00 34.24 4.49
470 471 9.553418 AAAATGTTTTTCTTTTTGAATTCCACG 57.447 25.926 2.27 0.00 33.92 4.94
479 480 9.798885 TGACACGTTAAAATGTTTTTCTTTTTG 57.201 25.926 0.00 0.00 35.79 2.44
480 481 9.800299 GTGACACGTTAAAATGTTTTTCTTTTT 57.200 25.926 0.00 0.00 37.26 1.94
481 482 8.157183 CGTGACACGTTAAAATGTTTTTCTTTT 58.843 29.630 19.77 0.00 36.74 2.27
482 483 7.659159 CGTGACACGTTAAAATGTTTTTCTTT 58.341 30.769 19.77 0.00 36.74 2.52
483 484 6.237358 GCGTGACACGTTAAAATGTTTTTCTT 60.237 34.615 27.32 0.00 44.73 2.52
484 485 5.228427 GCGTGACACGTTAAAATGTTTTTCT 59.772 36.000 27.32 0.00 44.73 2.52
485 486 5.408746 GCGTGACACGTTAAAATGTTTTTC 58.591 37.500 27.32 3.51 44.73 2.29
486 487 4.028348 CGCGTGACACGTTAAAATGTTTTT 60.028 37.500 27.32 0.00 44.73 1.94
487 488 3.479232 CGCGTGACACGTTAAAATGTTTT 59.521 39.130 27.32 0.00 44.73 2.43
488 489 3.030441 CGCGTGACACGTTAAAATGTTT 58.970 40.909 27.32 0.00 44.73 2.83
489 490 2.284684 TCGCGTGACACGTTAAAATGTT 59.715 40.909 27.32 0.00 44.73 2.71
490 491 1.859703 TCGCGTGACACGTTAAAATGT 59.140 42.857 27.32 0.00 44.73 2.71
491 492 2.563670 TCGCGTGACACGTTAAAATG 57.436 45.000 27.32 10.19 44.73 2.32
492 493 3.475242 CAATCGCGTGACACGTTAAAAT 58.525 40.909 27.32 12.04 44.73 1.82
493 494 2.893837 CAATCGCGTGACACGTTAAAA 58.106 42.857 27.32 10.40 44.73 1.52
494 495 1.397441 GCAATCGCGTGACACGTTAAA 60.397 47.619 27.32 12.05 44.73 1.52
495 496 0.162082 GCAATCGCGTGACACGTTAA 59.838 50.000 27.32 14.38 44.73 2.01
496 497 0.940047 TGCAATCGCGTGACACGTTA 60.940 50.000 27.32 16.76 44.73 3.18
497 498 2.241190 TGCAATCGCGTGACACGTT 61.241 52.632 27.32 12.63 44.73 3.99
498 499 2.660224 TGCAATCGCGTGACACGT 60.660 55.556 27.32 6.81 44.73 4.49
499 500 2.202046 GTGCAATCGCGTGACACG 60.202 61.111 23.43 23.43 45.88 4.49
500 501 2.202046 CGTGCAATCGCGTGACAC 60.202 61.111 5.77 9.93 42.97 3.67
501 502 4.070818 GCGTGCAATCGCGTGACA 62.071 61.111 5.77 0.00 46.94 3.58
508 509 2.176546 CCAACAGGCGTGCAATCG 59.823 61.111 6.26 0.00 0.00 3.34
509 510 0.955428 TCTCCAACAGGCGTGCAATC 60.955 55.000 6.26 0.00 0.00 2.67
510 511 0.322816 ATCTCCAACAGGCGTGCAAT 60.323 50.000 6.26 0.00 0.00 3.56
511 512 1.073025 ATCTCCAACAGGCGTGCAA 59.927 52.632 6.26 0.00 0.00 4.08
512 513 1.672030 CATCTCCAACAGGCGTGCA 60.672 57.895 6.26 0.00 0.00 4.57
513 514 3.044059 GCATCTCCAACAGGCGTGC 62.044 63.158 6.26 0.00 0.00 5.34
514 515 1.364626 GAGCATCTCCAACAGGCGTG 61.365 60.000 4.53 4.53 0.00 5.34
515 516 1.078848 GAGCATCTCCAACAGGCGT 60.079 57.895 0.00 0.00 0.00 5.68
516 517 3.805267 GAGCATCTCCAACAGGCG 58.195 61.111 0.00 0.00 0.00 5.52
527 528 6.523840 AGAAACCTGATCATCTAAGAGCATC 58.476 40.000 0.00 0.00 32.92 3.91
528 529 6.497624 AGAAACCTGATCATCTAAGAGCAT 57.502 37.500 0.00 0.00 32.92 3.79
529 530 5.946942 AGAAACCTGATCATCTAAGAGCA 57.053 39.130 0.00 0.00 32.32 4.26
530 531 6.036953 CACAAGAAACCTGATCATCTAAGAGC 59.963 42.308 0.00 0.00 0.00 4.09
531 532 7.326454 TCACAAGAAACCTGATCATCTAAGAG 58.674 38.462 0.00 0.00 0.00 2.85
532 533 7.244886 TCACAAGAAACCTGATCATCTAAGA 57.755 36.000 0.00 0.00 0.00 2.10
533 534 7.767659 TCATCACAAGAAACCTGATCATCTAAG 59.232 37.037 0.00 0.00 0.00 2.18
534 535 7.623630 TCATCACAAGAAACCTGATCATCTAA 58.376 34.615 0.00 0.00 0.00 2.10
535 536 7.186570 TCATCACAAGAAACCTGATCATCTA 57.813 36.000 0.00 0.00 0.00 1.98
536 537 6.058553 TCATCACAAGAAACCTGATCATCT 57.941 37.500 0.00 0.00 0.00 2.90
537 538 6.748333 TTCATCACAAGAAACCTGATCATC 57.252 37.500 0.00 0.00 0.00 2.92
538 539 6.888088 TGATTCATCACAAGAAACCTGATCAT 59.112 34.615 0.00 0.00 0.00 2.45
539 540 6.240145 TGATTCATCACAAGAAACCTGATCA 58.760 36.000 0.00 0.00 0.00 2.92
540 541 6.748333 TGATTCATCACAAGAAACCTGATC 57.252 37.500 0.00 0.00 0.00 2.92
541 542 6.405508 GCATGATTCATCACAAGAAACCTGAT 60.406 38.462 0.00 0.00 40.03 2.90
542 543 5.106038 GCATGATTCATCACAAGAAACCTGA 60.106 40.000 0.00 0.00 40.03 3.86
543 544 5.100259 GCATGATTCATCACAAGAAACCTG 58.900 41.667 0.00 0.00 40.03 4.00
544 545 4.159135 GGCATGATTCATCACAAGAAACCT 59.841 41.667 0.00 0.00 40.03 3.50
545 546 4.082081 TGGCATGATTCATCACAAGAAACC 60.082 41.667 0.00 0.00 40.03 3.27
546 547 5.063180 TGGCATGATTCATCACAAGAAAC 57.937 39.130 0.00 0.00 40.03 2.78
547 548 5.725325 TTGGCATGATTCATCACAAGAAA 57.275 34.783 0.00 0.00 40.03 2.52
548 549 5.472148 GTTTGGCATGATTCATCACAAGAA 58.528 37.500 0.00 0.00 40.03 2.52
549 550 4.082081 GGTTTGGCATGATTCATCACAAGA 60.082 41.667 0.00 3.48 40.03 3.02
550 551 4.178540 GGTTTGGCATGATTCATCACAAG 58.821 43.478 0.00 0.00 40.03 3.16
551 552 3.367190 CGGTTTGGCATGATTCATCACAA 60.367 43.478 0.00 2.67 40.03 3.33
552 553 2.164017 CGGTTTGGCATGATTCATCACA 59.836 45.455 0.00 0.00 40.03 3.58
553 554 2.480073 CCGGTTTGGCATGATTCATCAC 60.480 50.000 0.00 0.00 40.03 3.06
554 555 1.750206 CCGGTTTGGCATGATTCATCA 59.250 47.619 0.00 0.00 41.70 3.07
555 556 2.023673 TCCGGTTTGGCATGATTCATC 58.976 47.619 0.00 0.00 37.80 2.92
556 557 2.026641 CTCCGGTTTGGCATGATTCAT 58.973 47.619 0.00 0.00 37.80 2.57
557 558 1.271871 ACTCCGGTTTGGCATGATTCA 60.272 47.619 0.00 0.00 37.80 2.57
558 559 1.133025 CACTCCGGTTTGGCATGATTC 59.867 52.381 0.00 0.00 37.80 2.52
559 560 1.176527 CACTCCGGTTTGGCATGATT 58.823 50.000 0.00 0.00 37.80 2.57
560 561 0.327924 TCACTCCGGTTTGGCATGAT 59.672 50.000 0.00 0.00 37.80 2.45
561 562 0.321564 CTCACTCCGGTTTGGCATGA 60.322 55.000 0.00 0.00 37.80 3.07
562 563 1.926511 GCTCACTCCGGTTTGGCATG 61.927 60.000 0.00 0.00 37.80 4.06
563 564 1.675641 GCTCACTCCGGTTTGGCAT 60.676 57.895 0.00 0.00 37.80 4.40
564 565 2.281484 GCTCACTCCGGTTTGGCA 60.281 61.111 0.00 0.00 37.80 4.92
565 566 1.452145 TTTGCTCACTCCGGTTTGGC 61.452 55.000 0.00 6.48 37.80 4.52
566 567 0.593128 CTTTGCTCACTCCGGTTTGG 59.407 55.000 0.00 0.00 40.09 3.28
567 568 0.593128 CCTTTGCTCACTCCGGTTTG 59.407 55.000 0.00 0.00 0.00 2.93
568 569 1.172812 GCCTTTGCTCACTCCGGTTT 61.173 55.000 0.00 0.00 33.53 3.27
569 570 1.600916 GCCTTTGCTCACTCCGGTT 60.601 57.895 0.00 0.00 33.53 4.44
570 571 2.032681 GCCTTTGCTCACTCCGGT 59.967 61.111 0.00 0.00 33.53 5.28
571 572 3.121030 CGCCTTTGCTCACTCCGG 61.121 66.667 0.00 0.00 34.43 5.14
572 573 3.793144 GCGCCTTTGCTCACTCCG 61.793 66.667 0.00 0.00 34.43 4.63
573 574 1.968540 AAGCGCCTTTGCTCACTCC 60.969 57.895 2.29 0.00 46.60 3.85
574 575 1.208614 CAAGCGCCTTTGCTCACTC 59.791 57.895 2.29 0.00 46.60 3.51
575 576 1.526917 ACAAGCGCCTTTGCTCACT 60.527 52.632 2.29 0.00 46.60 3.41
576 577 1.370900 CACAAGCGCCTTTGCTCAC 60.371 57.895 2.29 0.00 46.60 3.51
577 578 3.033184 CACAAGCGCCTTTGCTCA 58.967 55.556 2.29 0.00 46.60 4.26
578 579 2.429739 GCACAAGCGCCTTTGCTC 60.430 61.111 9.84 0.00 46.60 4.26
588 589 0.789383 GAACATACGCACGCACAAGC 60.789 55.000 0.00 0.00 37.42 4.01
589 590 0.510790 TGAACATACGCACGCACAAG 59.489 50.000 0.00 0.00 0.00 3.16
590 591 0.938008 TTGAACATACGCACGCACAA 59.062 45.000 0.00 0.00 0.00 3.33
591 592 0.938008 TTTGAACATACGCACGCACA 59.062 45.000 0.00 0.00 0.00 4.57
592 593 1.591248 CTTTGAACATACGCACGCAC 58.409 50.000 0.00 0.00 0.00 5.34
637 638 0.516001 TACAGACACGAGACGCAGAC 59.484 55.000 0.00 0.00 0.00 3.51
638 639 0.516001 GTACAGACACGAGACGCAGA 59.484 55.000 0.00 0.00 0.00 4.26
639 640 0.454620 GGTACAGACACGAGACGCAG 60.455 60.000 0.00 0.00 0.00 5.18
640 641 1.577922 GGTACAGACACGAGACGCA 59.422 57.895 0.00 0.00 0.00 5.24
668 4376 7.442969 TCAACTTTGTATCGTCTGGTATGTTTT 59.557 33.333 0.00 0.00 0.00 2.43
672 4380 5.520288 CCTCAACTTTGTATCGTCTGGTATG 59.480 44.000 0.00 0.00 0.00 2.39
676 4384 3.679980 CACCTCAACTTTGTATCGTCTGG 59.320 47.826 0.00 0.00 0.00 3.86
692 4405 3.635191 TGCCGTCCATGCACCTCA 61.635 61.111 0.00 0.00 32.85 3.86
851 4568 1.114722 TTGGGCTTGGGTTTGAGCAG 61.115 55.000 0.00 0.00 40.63 4.24
908 4636 2.042843 GAAGGGGAGAGGAGGCGA 60.043 66.667 0.00 0.00 0.00 5.54
941 4678 2.843545 GGTGTGAAAGGGGGCAGA 59.156 61.111 0.00 0.00 0.00 4.26
2073 5861 1.153549 GCGGAACAGCTTCTCGGAT 60.154 57.895 4.12 0.00 0.00 4.18
2115 5907 2.033141 TCTGGCAGCAACTCAGCC 59.967 61.111 10.34 0.00 46.51 4.85
2191 5983 0.032416 TCCCCTAGCCTGACCAGTAC 60.032 60.000 0.00 0.00 0.00 2.73
2230 6030 0.960364 ATCGCATTGGCAAACTCGGT 60.960 50.000 3.01 1.27 41.24 4.69
2331 6131 0.036010 AGCGGCTGTAATCTGCAAGT 60.036 50.000 0.00 0.00 39.69 3.16
2385 6185 1.304134 GTCGCCCCCATTTTCCAGT 60.304 57.895 0.00 0.00 0.00 4.00
2400 6200 2.061773 GGAGTCATATCCGCATTGTCG 58.938 52.381 0.00 0.00 0.00 4.35
2607 6407 4.187506 AGAGTACCTCCTAATCTGACCC 57.812 50.000 0.00 0.00 28.35 4.46
2901 6708 8.740123 TTATATACTTTGCGAAATTCCTTCCA 57.260 30.769 0.00 0.00 0.00 3.53
3085 6892 3.420839 AAAGAAAAACCTGACTGCACG 57.579 42.857 0.00 0.00 0.00 5.34
3285 7210 1.381165 GCCAATAAACCCGTGCGGAT 61.381 55.000 12.71 0.00 37.50 4.18
3383 7308 9.927668 GATTTTATTTGAAAGAGGATTCCAACA 57.072 29.630 5.29 0.00 0.00 3.33
3807 7733 5.106197 GGTTAATGGTTTCGGTTCGGTATTT 60.106 40.000 0.00 0.00 0.00 1.40
3825 7751 7.145323 CCACAATTTCAGTCTTTTCGGTTAAT 58.855 34.615 0.00 0.00 0.00 1.40
3826 7752 6.095720 ACCACAATTTCAGTCTTTTCGGTTAA 59.904 34.615 0.00 0.00 0.00 2.01
3858 7784 8.316214 TGAAAACCGAATTTATCTGTACTAGGT 58.684 33.333 0.00 0.00 0.00 3.08
3958 7884 4.513406 TTCCACTGGAATATAACACCCC 57.487 45.455 6.39 0.00 36.71 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.