Multiple sequence alignment - TraesCS3D01G424700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G424700 chr3D 100.000 2876 0 0 1 2876 536951468 536954343 0.000000e+00 5312.0
1 TraesCS3D01G424700 chr3D 83.268 1267 173 23 733 1986 536979258 536980498 0.000000e+00 1129.0
2 TraesCS3D01G424700 chr3D 84.375 256 38 2 1066 1320 537023511 537023765 1.710000e-62 250.0
3 TraesCS3D01G424700 chr3A 95.320 1624 59 10 962 2580 672206292 672207903 0.000000e+00 2562.0
4 TraesCS3D01G424700 chr3A 83.054 1192 158 24 733 1903 672210337 672211505 0.000000e+00 1042.0
5 TraesCS3D01G424700 chr3A 83.203 1024 156 10 867 1881 672216044 672217060 0.000000e+00 924.0
6 TraesCS3D01G424700 chr3A 94.977 219 9 2 2646 2863 672207892 672208109 2.740000e-90 342.0
7 TraesCS3D01G424700 chr7B 85.228 1117 132 17 908 2016 629019348 629020439 0.000000e+00 1118.0
8 TraesCS3D01G424700 chr3B 93.103 667 44 2 1381 2046 709287043 709287708 0.000000e+00 976.0
9 TraesCS3D01G424700 chr3B 77.044 697 128 20 2183 2863 709288098 709288778 3.500000e-99 372.0
10 TraesCS3D01G424700 chr3B 93.689 206 10 3 475 680 709285439 709285641 3.600000e-79 305.0
11 TraesCS3D01G424700 chr7D 84.670 985 121 12 1035 2016 572018234 572019191 0.000000e+00 955.0
12 TraesCS3D01G424700 chr7D 85.556 90 11 2 407 495 624757183 624757095 3.050000e-15 93.5
13 TraesCS3D01G424700 chr2B 73.248 314 69 11 1079 1386 30300939 30300635 1.820000e-17 100.0
14 TraesCS3D01G424700 chr6D 93.103 58 4 0 1093 1150 121300819 121300762 5.110000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G424700 chr3D 536951468 536954343 2875 False 5312.000000 5312 100.000000 1 2876 1 chr3D.!!$F1 2875
1 TraesCS3D01G424700 chr3D 536979258 536980498 1240 False 1129.000000 1129 83.268000 733 1986 1 chr3D.!!$F2 1253
2 TraesCS3D01G424700 chr3A 672206292 672211505 5213 False 1315.333333 2562 91.117000 733 2863 3 chr3A.!!$F2 2130
3 TraesCS3D01G424700 chr3A 672216044 672217060 1016 False 924.000000 924 83.203000 867 1881 1 chr3A.!!$F1 1014
4 TraesCS3D01G424700 chr7B 629019348 629020439 1091 False 1118.000000 1118 85.228000 908 2016 1 chr7B.!!$F1 1108
5 TraesCS3D01G424700 chr3B 709285439 709288778 3339 False 551.000000 976 87.945333 475 2863 3 chr3B.!!$F1 2388
6 TraesCS3D01G424700 chr7D 572018234 572019191 957 False 955.000000 955 84.670000 1035 2016 1 chr7D.!!$F1 981

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
857 866 0.033228 GATCTGGATGCCTCGACCTG 59.967 60.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2348 7800 0.035739 GCAACGGGGGAGTGTCTTTA 59.964 55.0 0.0 0.0 0.0 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.920869 GTGTGTGTGTCGCGTCTG 59.079 61.111 5.77 0.00 0.00 3.51
18 19 1.876714 GTGTGTGTGTCGCGTCTGT 60.877 57.895 5.77 0.00 0.00 3.41
19 20 1.876263 TGTGTGTGTCGCGTCTGTG 60.876 57.895 5.77 0.00 0.00 3.66
20 21 1.876714 GTGTGTGTCGCGTCTGTGT 60.877 57.895 5.77 0.00 0.00 3.72
21 22 1.587876 TGTGTGTCGCGTCTGTGTC 60.588 57.895 5.77 0.00 0.00 3.67
22 23 2.353030 TGTGTCGCGTCTGTGTCG 60.353 61.111 5.77 0.00 0.00 4.35
34 35 1.214325 TGTGTCGCAGATGGGTACG 59.786 57.895 0.00 0.00 40.67 3.67
35 36 1.518572 GTGTCGCAGATGGGTACGG 60.519 63.158 0.00 0.00 40.67 4.02
36 37 1.679641 TGTCGCAGATGGGTACGGA 60.680 57.895 0.00 0.00 40.67 4.69
37 38 1.226888 GTCGCAGATGGGTACGGAC 60.227 63.158 0.00 0.00 40.67 4.79
38 39 2.278596 CGCAGATGGGTACGGACG 60.279 66.667 0.00 0.00 0.00 4.79
39 40 2.767445 CGCAGATGGGTACGGACGA 61.767 63.158 0.00 0.00 0.00 4.20
40 41 1.065928 GCAGATGGGTACGGACGAG 59.934 63.158 0.00 0.00 0.00 4.18
41 42 1.381928 GCAGATGGGTACGGACGAGA 61.382 60.000 0.00 0.00 0.00 4.04
42 43 0.663688 CAGATGGGTACGGACGAGAG 59.336 60.000 0.00 0.00 0.00 3.20
43 44 1.102222 AGATGGGTACGGACGAGAGC 61.102 60.000 0.00 0.00 0.00 4.09
44 45 2.073037 GATGGGTACGGACGAGAGCC 62.073 65.000 0.00 5.75 0.00 4.70
45 46 2.753043 GGGTACGGACGAGAGCCA 60.753 66.667 12.30 0.00 0.00 4.75
46 47 2.488820 GGTACGGACGAGAGCCAC 59.511 66.667 0.00 0.00 0.00 5.01
47 48 2.488820 GTACGGACGAGAGCCACC 59.511 66.667 0.00 0.00 0.00 4.61
48 49 3.129502 TACGGACGAGAGCCACCG 61.130 66.667 0.00 0.00 45.80 4.94
50 51 4.778415 CGGACGAGAGCCACCGTG 62.778 72.222 0.00 0.00 39.30 4.94
52 53 4.057428 GACGAGAGCCACCGTGCT 62.057 66.667 0.00 0.00 46.37 4.40
61 62 3.490759 CACCGTGCTCGCACCATC 61.491 66.667 15.65 0.00 43.49 3.51
62 63 4.760047 ACCGTGCTCGCACCATCC 62.760 66.667 15.65 0.00 43.49 3.51
63 64 4.758251 CCGTGCTCGCACCATCCA 62.758 66.667 15.65 0.00 43.49 3.41
64 65 3.190849 CGTGCTCGCACCATCCAG 61.191 66.667 15.65 0.00 43.49 3.86
65 66 3.503363 GTGCTCGCACCATCCAGC 61.503 66.667 10.82 0.00 40.79 4.85
66 67 4.019312 TGCTCGCACCATCCAGCA 62.019 61.111 0.00 0.00 39.58 4.41
67 68 2.515523 GCTCGCACCATCCAGCAT 60.516 61.111 0.00 0.00 0.00 3.79
68 69 2.831366 GCTCGCACCATCCAGCATG 61.831 63.158 0.00 0.00 0.00 4.06
69 70 2.825387 TCGCACCATCCAGCATGC 60.825 61.111 10.51 10.51 31.97 4.06
70 71 2.827190 CGCACCATCCAGCATGCT 60.827 61.111 16.30 16.30 35.88 3.79
71 72 1.524393 CGCACCATCCAGCATGCTA 60.524 57.895 22.19 6.19 35.88 3.49
72 73 1.504647 CGCACCATCCAGCATGCTAG 61.505 60.000 22.19 14.31 35.88 3.42
73 74 1.170919 GCACCATCCAGCATGCTAGG 61.171 60.000 22.19 22.58 35.16 3.02
74 75 0.471191 CACCATCCAGCATGCTAGGA 59.529 55.000 29.13 29.13 35.59 2.94
75 76 1.073444 CACCATCCAGCATGCTAGGAT 59.927 52.381 30.31 30.31 42.71 3.24
81 82 3.963222 GCATGCTAGGATGCTCCG 58.037 61.111 34.25 7.94 44.57 4.63
82 83 1.670406 GCATGCTAGGATGCTCCGG 60.670 63.158 34.25 7.24 44.57 5.14
83 84 1.670406 CATGCTAGGATGCTCCGGC 60.670 63.158 11.59 12.41 42.75 6.13
84 85 3.231889 ATGCTAGGATGCTCCGGCG 62.232 63.158 0.00 0.00 42.75 6.46
85 86 3.917760 GCTAGGATGCTCCGGCGT 61.918 66.667 6.01 0.00 42.75 5.68
86 87 2.028190 CTAGGATGCTCCGGCGTG 59.972 66.667 6.01 0.00 42.75 5.34
87 88 2.441348 TAGGATGCTCCGGCGTGA 60.441 61.111 6.01 1.65 42.75 4.35
88 89 2.016393 CTAGGATGCTCCGGCGTGAA 62.016 60.000 6.01 0.00 42.75 3.18
89 90 2.292794 TAGGATGCTCCGGCGTGAAC 62.293 60.000 6.01 0.00 42.75 3.18
90 91 2.434185 GATGCTCCGGCGTGAACA 60.434 61.111 6.01 5.04 42.25 3.18
91 92 2.740714 GATGCTCCGGCGTGAACAC 61.741 63.158 6.01 0.00 42.25 3.32
109 110 3.188786 GTCGTCCGTGCAGCCATC 61.189 66.667 0.00 0.00 0.00 3.51
110 111 3.381983 TCGTCCGTGCAGCCATCT 61.382 61.111 0.00 0.00 0.00 2.90
111 112 2.887568 CGTCCGTGCAGCCATCTC 60.888 66.667 0.00 0.00 0.00 2.75
112 113 2.887568 GTCCGTGCAGCCATCTCG 60.888 66.667 0.00 0.00 0.00 4.04
113 114 4.147449 TCCGTGCAGCCATCTCGG 62.147 66.667 3.43 3.43 40.67 4.63
114 115 4.457496 CCGTGCAGCCATCTCGGT 62.457 66.667 1.75 0.00 36.27 4.69
115 116 3.190849 CGTGCAGCCATCTCGGTG 61.191 66.667 0.00 0.00 36.97 4.94
116 117 2.265739 GTGCAGCCATCTCGGTGA 59.734 61.111 0.00 0.00 36.97 4.02
117 118 2.103042 GTGCAGCCATCTCGGTGAC 61.103 63.158 0.00 0.00 36.97 3.67
161 162 2.278857 CGACTTCGGCGAGATGGG 60.279 66.667 10.46 2.20 35.37 4.00
162 163 2.586357 GACTTCGGCGAGATGGGC 60.586 66.667 10.46 0.21 0.00 5.36
188 189 2.044053 GGCAACCATAGCCCTGCA 60.044 61.111 0.00 0.00 46.50 4.41
189 190 1.682005 GGCAACCATAGCCCTGCAA 60.682 57.895 0.00 0.00 46.50 4.08
190 191 1.512694 GCAACCATAGCCCTGCAAC 59.487 57.895 0.00 0.00 34.87 4.17
191 192 0.967380 GCAACCATAGCCCTGCAACT 60.967 55.000 0.00 0.00 34.87 3.16
192 193 0.813184 CAACCATAGCCCTGCAACTG 59.187 55.000 0.00 0.00 0.00 3.16
193 194 0.967380 AACCATAGCCCTGCAACTGC 60.967 55.000 0.00 0.00 42.50 4.40
194 195 2.475466 CCATAGCCCTGCAACTGCG 61.475 63.158 0.00 0.00 45.83 5.18
195 196 1.450134 CATAGCCCTGCAACTGCGA 60.450 57.895 0.00 0.00 45.83 5.10
196 197 1.450312 ATAGCCCTGCAACTGCGAC 60.450 57.895 0.00 0.00 45.83 5.19
197 198 1.903877 ATAGCCCTGCAACTGCGACT 61.904 55.000 0.00 0.00 45.83 4.18
198 199 2.507110 TAGCCCTGCAACTGCGACTC 62.507 60.000 0.00 0.00 45.83 3.36
199 200 2.743928 CCCTGCAACTGCGACTCC 60.744 66.667 0.00 0.00 45.83 3.85
200 201 2.031012 CCTGCAACTGCGACTCCA 59.969 61.111 0.00 0.00 45.83 3.86
201 202 2.320587 CCTGCAACTGCGACTCCAC 61.321 63.158 0.00 0.00 45.83 4.02
202 203 2.280797 TGCAACTGCGACTCCACC 60.281 61.111 0.00 0.00 45.83 4.61
203 204 2.280797 GCAACTGCGACTCCACCA 60.281 61.111 0.00 0.00 0.00 4.17
204 205 1.672356 GCAACTGCGACTCCACCAT 60.672 57.895 0.00 0.00 0.00 3.55
205 206 1.639298 GCAACTGCGACTCCACCATC 61.639 60.000 0.00 0.00 0.00 3.51
206 207 1.079819 AACTGCGACTCCACCATCG 60.080 57.895 0.00 0.00 41.32 3.84
210 211 2.579201 CGACTCCACCATCGCCTT 59.421 61.111 0.00 0.00 0.00 4.35
211 212 1.811266 CGACTCCACCATCGCCTTG 60.811 63.158 0.00 0.00 0.00 3.61
212 213 1.450312 GACTCCACCATCGCCTTGG 60.450 63.158 0.00 0.00 42.82 3.61
219 220 3.369381 CCATCGCCTTGGTCTACTG 57.631 57.895 0.00 0.00 31.74 2.74
220 221 0.179073 CCATCGCCTTGGTCTACTGG 60.179 60.000 0.00 0.00 31.74 4.00
221 222 0.811616 CATCGCCTTGGTCTACTGGC 60.812 60.000 0.00 0.00 41.76 4.85
222 223 0.978146 ATCGCCTTGGTCTACTGGCT 60.978 55.000 0.00 0.00 42.90 4.75
223 224 1.448540 CGCCTTGGTCTACTGGCTG 60.449 63.158 0.00 0.00 42.90 4.85
224 225 1.746991 GCCTTGGTCTACTGGCTGC 60.747 63.158 0.00 0.00 41.92 5.25
225 226 1.986413 CCTTGGTCTACTGGCTGCT 59.014 57.895 0.00 0.00 0.00 4.24
226 227 0.392193 CCTTGGTCTACTGGCTGCTG 60.392 60.000 0.00 0.00 0.00 4.41
227 228 0.392193 CTTGGTCTACTGGCTGCTGG 60.392 60.000 0.00 0.00 0.00 4.85
228 229 1.841302 TTGGTCTACTGGCTGCTGGG 61.841 60.000 0.00 0.00 0.00 4.45
229 230 2.124942 GTCTACTGGCTGCTGGGC 60.125 66.667 0.00 0.00 41.27 5.36
237 238 4.487412 GCTGCTGGGCATGCGTTC 62.487 66.667 12.44 4.47 38.13 3.95
238 239 3.818787 CTGCTGGGCATGCGTTCC 61.819 66.667 12.44 8.13 38.13 3.62
239 240 4.657408 TGCTGGGCATGCGTTCCA 62.657 61.111 12.44 12.65 31.71 3.53
240 241 4.120331 GCTGGGCATGCGTTCCAC 62.120 66.667 12.44 5.17 0.00 4.02
241 242 3.803082 CTGGGCATGCGTTCCACG 61.803 66.667 12.44 4.39 45.88 4.94
246 247 3.133464 CATGCGTTCCACGGCCAT 61.133 61.111 2.24 0.00 42.82 4.40
247 248 3.133464 ATGCGTTCCACGGCCATG 61.133 61.111 2.24 0.00 42.82 3.66
248 249 3.918253 ATGCGTTCCACGGCCATGT 62.918 57.895 2.24 0.00 42.82 3.21
249 250 4.101790 GCGTTCCACGGCCATGTG 62.102 66.667 2.24 3.24 42.82 3.21
250 251 4.101790 CGTTCCACGGCCATGTGC 62.102 66.667 2.24 0.00 38.08 4.57
251 252 2.672996 GTTCCACGGCCATGTGCT 60.673 61.111 2.24 0.00 40.92 4.40
261 262 2.559785 CCATGTGCTGGTTGTCTCC 58.440 57.895 0.00 0.00 40.49 3.71
262 263 0.962356 CCATGTGCTGGTTGTCTCCC 60.962 60.000 0.00 0.00 40.49 4.30
263 264 0.250858 CATGTGCTGGTTGTCTCCCA 60.251 55.000 0.00 0.00 0.00 4.37
264 265 0.250901 ATGTGCTGGTTGTCTCCCAC 60.251 55.000 0.00 0.00 0.00 4.61
265 266 1.961277 GTGCTGGTTGTCTCCCACG 60.961 63.158 0.00 0.00 0.00 4.94
266 267 2.426023 GCTGGTTGTCTCCCACGT 59.574 61.111 0.00 0.00 0.00 4.49
267 268 1.961277 GCTGGTTGTCTCCCACGTG 60.961 63.158 9.08 9.08 0.00 4.49
268 269 1.445942 CTGGTTGTCTCCCACGTGT 59.554 57.895 15.65 0.00 0.00 4.49
269 270 0.880278 CTGGTTGTCTCCCACGTGTG 60.880 60.000 15.65 2.45 0.00 3.82
270 271 2.251642 GGTTGTCTCCCACGTGTGC 61.252 63.158 15.65 0.19 0.00 4.57
271 272 1.227556 GTTGTCTCCCACGTGTGCT 60.228 57.895 15.65 0.00 0.00 4.40
272 273 1.227527 TTGTCTCCCACGTGTGCTG 60.228 57.895 15.65 0.00 0.00 4.41
273 274 2.357517 GTCTCCCACGTGTGCTGG 60.358 66.667 15.65 8.56 0.00 4.85
274 275 2.842462 TCTCCCACGTGTGCTGGT 60.842 61.111 15.65 0.00 0.00 4.00
275 276 2.357517 CTCCCACGTGTGCTGGTC 60.358 66.667 15.65 0.00 0.00 4.02
276 277 4.293648 TCCCACGTGTGCTGGTCG 62.294 66.667 15.65 0.00 0.00 4.79
298 299 4.805231 CCGTGCGTATCGTGGCCA 62.805 66.667 0.00 0.00 0.00 5.36
299 300 3.550992 CGTGCGTATCGTGGCCAC 61.551 66.667 26.78 26.78 0.00 5.01
330 331 3.642778 GAGCGTGTCGGCTGCCTTA 62.643 63.158 17.92 1.32 44.93 2.69
331 332 2.511600 GCGTGTCGGCTGCCTTAT 60.512 61.111 17.92 0.00 0.00 1.73
332 333 2.106683 GCGTGTCGGCTGCCTTATT 61.107 57.895 17.92 0.00 0.00 1.40
333 334 1.644786 GCGTGTCGGCTGCCTTATTT 61.645 55.000 17.92 0.00 0.00 1.40
334 335 0.096976 CGTGTCGGCTGCCTTATTTG 59.903 55.000 17.92 0.00 0.00 2.32
335 336 1.165270 GTGTCGGCTGCCTTATTTGT 58.835 50.000 17.92 0.00 0.00 2.83
336 337 1.135689 GTGTCGGCTGCCTTATTTGTG 60.136 52.381 17.92 0.00 0.00 3.33
337 338 1.165270 GTCGGCTGCCTTATTTGTGT 58.835 50.000 17.92 0.00 0.00 3.72
338 339 1.135689 GTCGGCTGCCTTATTTGTGTG 60.136 52.381 17.92 0.00 0.00 3.82
339 340 0.881118 CGGCTGCCTTATTTGTGTGT 59.119 50.000 17.92 0.00 0.00 3.72
340 341 1.401409 CGGCTGCCTTATTTGTGTGTG 60.401 52.381 17.92 0.00 0.00 3.82
341 342 1.669795 GGCTGCCTTATTTGTGTGTGC 60.670 52.381 12.43 0.00 0.00 4.57
342 343 1.270550 GCTGCCTTATTTGTGTGTGCT 59.729 47.619 0.00 0.00 0.00 4.40
343 344 2.487762 GCTGCCTTATTTGTGTGTGCTA 59.512 45.455 0.00 0.00 0.00 3.49
344 345 3.129287 GCTGCCTTATTTGTGTGTGCTAT 59.871 43.478 0.00 0.00 0.00 2.97
345 346 4.731773 GCTGCCTTATTTGTGTGTGCTATC 60.732 45.833 0.00 0.00 0.00 2.08
346 347 4.588899 TGCCTTATTTGTGTGTGCTATCT 58.411 39.130 0.00 0.00 0.00 1.98
347 348 5.009631 TGCCTTATTTGTGTGTGCTATCTT 58.990 37.500 0.00 0.00 0.00 2.40
348 349 5.106197 TGCCTTATTTGTGTGTGCTATCTTG 60.106 40.000 0.00 0.00 0.00 3.02
349 350 5.335127 CCTTATTTGTGTGTGCTATCTTGC 58.665 41.667 0.00 0.00 0.00 4.01
350 351 5.124457 CCTTATTTGTGTGTGCTATCTTGCT 59.876 40.000 0.00 0.00 0.00 3.91
351 352 6.316140 CCTTATTTGTGTGTGCTATCTTGCTA 59.684 38.462 0.00 0.00 0.00 3.49
352 353 7.012704 CCTTATTTGTGTGTGCTATCTTGCTAT 59.987 37.037 0.00 0.00 0.00 2.97
353 354 5.550232 TTTGTGTGTGCTATCTTGCTATG 57.450 39.130 0.00 0.00 0.00 2.23
354 355 2.938451 TGTGTGTGCTATCTTGCTATGC 59.062 45.455 0.00 0.00 0.00 3.14
355 356 2.938451 GTGTGTGCTATCTTGCTATGCA 59.062 45.455 0.00 0.00 36.47 3.96
356 357 3.562973 GTGTGTGCTATCTTGCTATGCAT 59.437 43.478 3.79 3.79 38.76 3.96
357 358 4.036027 GTGTGTGCTATCTTGCTATGCATT 59.964 41.667 3.54 0.00 38.76 3.56
358 359 4.641541 TGTGTGCTATCTTGCTATGCATTT 59.358 37.500 3.54 0.00 38.76 2.32
359 360 5.125900 TGTGTGCTATCTTGCTATGCATTTT 59.874 36.000 3.54 0.00 38.76 1.82
360 361 6.038356 GTGTGCTATCTTGCTATGCATTTTT 58.962 36.000 3.54 0.00 38.76 1.94
399 400 9.679661 TGTATATCTGCTTTTAAATCTCAACCA 57.320 29.630 0.00 0.00 0.00 3.67
402 403 7.707624 ATCTGCTTTTAAATCTCAACCATCA 57.292 32.000 0.00 0.00 0.00 3.07
403 404 7.523293 TCTGCTTTTAAATCTCAACCATCAA 57.477 32.000 0.00 0.00 0.00 2.57
404 405 7.950512 TCTGCTTTTAAATCTCAACCATCAAA 58.049 30.769 0.00 0.00 0.00 2.69
405 406 8.587608 TCTGCTTTTAAATCTCAACCATCAAAT 58.412 29.630 0.00 0.00 0.00 2.32
406 407 8.537049 TGCTTTTAAATCTCAACCATCAAATG 57.463 30.769 0.00 0.00 0.00 2.32
455 456 7.687941 AAAAAGATGACGTATGAAGAACCAT 57.312 32.000 0.00 0.00 0.00 3.55
456 457 6.668541 AAAGATGACGTATGAAGAACCATG 57.331 37.500 0.00 0.00 0.00 3.66
457 458 5.598416 AGATGACGTATGAAGAACCATGA 57.402 39.130 0.00 0.00 0.00 3.07
458 459 5.977635 AGATGACGTATGAAGAACCATGAA 58.022 37.500 0.00 0.00 0.00 2.57
459 460 6.406370 AGATGACGTATGAAGAACCATGAAA 58.594 36.000 0.00 0.00 0.00 2.69
460 461 6.536582 AGATGACGTATGAAGAACCATGAAAG 59.463 38.462 0.00 0.00 0.00 2.62
461 462 4.391830 TGACGTATGAAGAACCATGAAAGC 59.608 41.667 0.00 0.00 0.00 3.51
462 463 3.689649 ACGTATGAAGAACCATGAAAGCC 59.310 43.478 0.00 0.00 0.00 4.35
463 464 3.941483 CGTATGAAGAACCATGAAAGCCT 59.059 43.478 0.00 0.00 0.00 4.58
464 465 4.034510 CGTATGAAGAACCATGAAAGCCTC 59.965 45.833 0.00 0.00 0.00 4.70
465 466 2.795329 TGAAGAACCATGAAAGCCTCC 58.205 47.619 0.00 0.00 0.00 4.30
466 467 1.740025 GAAGAACCATGAAAGCCTCCG 59.260 52.381 0.00 0.00 0.00 4.63
467 468 0.693049 AGAACCATGAAAGCCTCCGT 59.307 50.000 0.00 0.00 0.00 4.69
468 469 1.073923 AGAACCATGAAAGCCTCCGTT 59.926 47.619 0.00 0.00 0.00 4.44
469 470 1.886542 GAACCATGAAAGCCTCCGTTT 59.113 47.619 0.00 0.00 0.00 3.60
470 471 1.995376 ACCATGAAAGCCTCCGTTTT 58.005 45.000 0.00 0.00 0.00 2.43
471 472 2.316108 ACCATGAAAGCCTCCGTTTTT 58.684 42.857 0.00 0.00 0.00 1.94
532 533 4.264253 TGGATGACAAAACTGATGCCTAG 58.736 43.478 0.00 0.00 0.00 3.02
554 555 4.039488 AGTTTGACTGACGGTAACCATACA 59.961 41.667 0.00 0.00 33.45 2.29
586 587 1.725641 TGGTGTTGCGCTTCTATCAG 58.274 50.000 9.73 0.00 0.00 2.90
615 616 3.058085 TGTTTAGCTGACACATGCACATG 60.058 43.478 9.06 9.06 44.15 3.21
649 650 3.165071 TGAGTATCAAGTCTGTGCCTCA 58.835 45.455 0.00 0.00 45.97 3.86
682 683 1.734163 CTAACTTGGGTTAGGTGGCG 58.266 55.000 7.73 0.00 46.56 5.69
683 684 0.321830 TAACTTGGGTTAGGTGGCGC 60.322 55.000 0.00 0.00 36.92 6.53
684 685 2.750237 CTTGGGTTAGGTGGCGCC 60.750 66.667 22.73 22.73 37.58 6.53
685 686 4.354162 TTGGGTTAGGTGGCGCCC 62.354 66.667 26.77 15.53 41.42 6.13
687 688 4.354162 GGGTTAGGTGGCGCCCAA 62.354 66.667 26.77 9.98 40.76 4.12
688 689 2.282603 GGTTAGGTGGCGCCCAAA 60.283 61.111 26.77 9.96 38.26 3.28
689 690 1.680989 GGTTAGGTGGCGCCCAAAT 60.681 57.895 26.77 10.03 38.26 2.32
690 691 1.254975 GGTTAGGTGGCGCCCAAATT 61.255 55.000 26.77 7.65 38.26 1.82
692 693 1.404035 GTTAGGTGGCGCCCAAATTAG 59.596 52.381 26.77 0.00 38.26 1.73
693 694 0.621609 TAGGTGGCGCCCAAATTAGT 59.378 50.000 26.77 2.00 38.26 2.24
694 695 0.679960 AGGTGGCGCCCAAATTAGTC 60.680 55.000 26.77 2.51 38.26 2.59
696 697 1.102978 GTGGCGCCCAAATTAGTCAT 58.897 50.000 26.77 0.00 34.18 3.06
697 698 1.102154 TGGCGCCCAAATTAGTCATG 58.898 50.000 26.77 0.00 0.00 3.07
698 699 1.102978 GGCGCCCAAATTAGTCATGT 58.897 50.000 18.11 0.00 0.00 3.21
700 701 2.032924 GGCGCCCAAATTAGTCATGTAC 59.967 50.000 18.11 0.00 0.00 2.90
701 702 2.680841 GCGCCCAAATTAGTCATGTACA 59.319 45.455 0.00 0.00 0.00 2.90
702 703 3.242739 GCGCCCAAATTAGTCATGTACAG 60.243 47.826 0.33 0.00 0.00 2.74
703 704 3.242739 CGCCCAAATTAGTCATGTACAGC 60.243 47.826 0.33 0.00 0.00 4.40
705 706 4.035675 GCCCAAATTAGTCATGTACAGCTC 59.964 45.833 0.33 0.00 0.00 4.09
706 707 5.185454 CCCAAATTAGTCATGTACAGCTCA 58.815 41.667 0.33 0.00 0.00 4.26
707 708 5.295292 CCCAAATTAGTCATGTACAGCTCAG 59.705 44.000 0.33 0.00 0.00 3.35
708 709 5.220739 CCAAATTAGTCATGTACAGCTCAGC 60.221 44.000 0.33 0.00 0.00 4.26
709 710 5.350504 AATTAGTCATGTACAGCTCAGCT 57.649 39.130 0.00 0.00 40.77 4.24
718 719 2.356793 AGCTCAGCTGTGTGTCGC 60.357 61.111 14.67 8.00 37.57 5.19
719 720 3.418068 GCTCAGCTGTGTGTCGCC 61.418 66.667 14.67 0.00 0.00 5.54
721 722 1.375140 CTCAGCTGTGTGTCGCCAT 60.375 57.895 14.67 0.00 0.00 4.40
722 723 1.632948 CTCAGCTGTGTGTCGCCATG 61.633 60.000 14.67 0.00 0.00 3.66
723 724 1.962822 CAGCTGTGTGTCGCCATGT 60.963 57.895 5.25 0.00 0.00 3.21
724 725 1.962822 AGCTGTGTGTCGCCATGTG 60.963 57.895 0.00 0.00 0.00 3.21
725 726 2.253758 GCTGTGTGTCGCCATGTGT 61.254 57.895 0.00 0.00 0.00 3.72
726 727 1.785041 GCTGTGTGTCGCCATGTGTT 61.785 55.000 0.00 0.00 0.00 3.32
727 728 0.662619 CTGTGTGTCGCCATGTGTTT 59.337 50.000 0.00 0.00 0.00 2.83
728 729 1.870402 CTGTGTGTCGCCATGTGTTTA 59.130 47.619 0.00 0.00 0.00 2.01
729 730 1.600013 TGTGTGTCGCCATGTGTTTAC 59.400 47.619 0.00 0.00 0.00 2.01
730 731 1.600013 GTGTGTCGCCATGTGTTTACA 59.400 47.619 0.00 0.00 41.89 2.41
733 734 4.094294 GTGTGTCGCCATGTGTTTACATAT 59.906 41.667 0.00 0.00 45.53 1.78
734 735 4.697828 TGTGTCGCCATGTGTTTACATATT 59.302 37.500 0.00 0.00 45.53 1.28
736 737 6.371825 TGTGTCGCCATGTGTTTACATATTAA 59.628 34.615 0.00 0.00 45.53 1.40
754 755 5.754543 ATTAACTAGTAGAGCTCGTGGTC 57.245 43.478 8.37 8.56 40.70 4.02
760 761 1.676678 TAGAGCTCGTGGTCCATGCC 61.677 60.000 8.37 0.17 41.26 4.40
763 764 1.227380 GCTCGTGGTCCATGCCTAG 60.227 63.158 6.17 0.21 0.00 3.02
764 765 1.676678 GCTCGTGGTCCATGCCTAGA 61.677 60.000 6.17 0.00 0.00 2.43
769 770 2.419990 CGTGGTCCATGCCTAGAATTCA 60.420 50.000 8.44 0.00 0.00 2.57
780 781 3.435026 GCCTAGAATTCAATACCAGGGCA 60.435 47.826 8.44 0.00 36.31 5.36
782 783 2.659428 AGAATTCAATACCAGGGCAGC 58.341 47.619 8.44 0.00 0.00 5.25
787 788 0.323725 CAATACCAGGGCAGCCAAGT 60.324 55.000 15.19 9.62 0.00 3.16
796 797 3.057526 CAGGGCAGCCAAGTTAGTTTAAC 60.058 47.826 15.19 0.00 38.94 2.01
818 819 5.014202 ACGTTTTTCCTTTGTATATGGCCT 58.986 37.500 3.32 0.00 0.00 5.19
823 824 8.406297 GTTTTTCCTTTGTATATGGCCTCTTAG 58.594 37.037 3.32 0.00 0.00 2.18
834 835 9.384764 GTATATGGCCTCTTAGAAATACCAATC 57.615 37.037 3.32 0.00 0.00 2.67
835 836 5.708736 TGGCCTCTTAGAAATACCAATCA 57.291 39.130 3.32 0.00 0.00 2.57
837 838 6.672593 TGGCCTCTTAGAAATACCAATCATT 58.327 36.000 3.32 0.00 0.00 2.57
838 839 6.547141 TGGCCTCTTAGAAATACCAATCATTG 59.453 38.462 3.32 0.00 0.00 2.82
848 857 6.585695 AATACCAATCATTGATCTGGATGC 57.414 37.500 23.28 0.00 32.97 3.91
849 858 3.228453 ACCAATCATTGATCTGGATGCC 58.772 45.455 23.28 0.00 32.97 4.40
850 859 3.117246 ACCAATCATTGATCTGGATGCCT 60.117 43.478 23.28 7.78 32.97 4.75
852 861 2.538512 TCATTGATCTGGATGCCTCG 57.461 50.000 0.00 0.00 0.00 4.63
855 864 0.465705 TTGATCTGGATGCCTCGACC 59.534 55.000 0.00 0.00 0.00 4.79
857 866 0.033228 GATCTGGATGCCTCGACCTG 59.967 60.000 0.00 0.00 0.00 4.00
859 868 0.904865 TCTGGATGCCTCGACCTGTT 60.905 55.000 0.00 0.00 0.00 3.16
860 869 0.036010 CTGGATGCCTCGACCTGTTT 60.036 55.000 0.00 0.00 0.00 2.83
862 871 1.837439 TGGATGCCTCGACCTGTTTAT 59.163 47.619 0.00 0.00 0.00 1.40
863 872 3.035363 TGGATGCCTCGACCTGTTTATA 58.965 45.455 0.00 0.00 0.00 0.98
864 873 3.452990 TGGATGCCTCGACCTGTTTATAA 59.547 43.478 0.00 0.00 0.00 0.98
865 874 4.058817 GGATGCCTCGACCTGTTTATAAG 58.941 47.826 0.00 0.00 0.00 1.73
866 875 4.443034 GGATGCCTCGACCTGTTTATAAGT 60.443 45.833 0.00 0.00 0.00 2.24
868 877 3.512329 TGCCTCGACCTGTTTATAAGTCA 59.488 43.478 4.16 0.00 0.00 3.41
869 878 4.161565 TGCCTCGACCTGTTTATAAGTCAT 59.838 41.667 4.16 0.00 0.00 3.06
870 879 5.361571 TGCCTCGACCTGTTTATAAGTCATA 59.638 40.000 4.16 0.00 0.00 2.15
871 880 6.127281 TGCCTCGACCTGTTTATAAGTCATAA 60.127 38.462 4.16 0.00 0.00 1.90
872 881 6.200475 GCCTCGACCTGTTTATAAGTCATAAC 59.800 42.308 4.16 0.00 0.00 1.89
873 882 6.700520 CCTCGACCTGTTTATAAGTCATAACC 59.299 42.308 4.16 0.00 0.00 2.85
874 883 7.172868 TCGACCTGTTTATAAGTCATAACCA 57.827 36.000 4.16 0.00 0.00 3.67
875 884 7.613585 TCGACCTGTTTATAAGTCATAACCAA 58.386 34.615 4.16 0.00 0.00 3.67
876 885 7.762615 TCGACCTGTTTATAAGTCATAACCAAG 59.237 37.037 4.16 0.00 0.00 3.61
877 886 7.465513 CGACCTGTTTATAAGTCATAACCAAGC 60.466 40.741 4.16 0.00 0.00 4.01
878 887 7.172342 ACCTGTTTATAAGTCATAACCAAGCA 58.828 34.615 0.00 0.00 0.00 3.91
879 888 7.668052 ACCTGTTTATAAGTCATAACCAAGCAA 59.332 33.333 0.00 0.00 0.00 3.91
880 889 8.686334 CCTGTTTATAAGTCATAACCAAGCAAT 58.314 33.333 0.00 0.00 0.00 3.56
901 910 0.036306 ACCAACCCCAACTTAGCTCG 59.964 55.000 0.00 0.00 0.00 5.03
906 915 3.217681 ACCCCAACTTAGCTCGAAAAA 57.782 42.857 0.00 0.00 0.00 1.94
917 926 0.248621 CTCGAAAAATCGCCATGGCC 60.249 55.000 30.79 13.72 37.98 5.36
919 928 1.806568 GAAAAATCGCCATGGCCGA 59.193 52.632 30.79 28.03 37.98 5.54
1218 1872 4.741239 ACCCGCCACCCTCAGGAT 62.741 66.667 0.00 0.00 36.73 3.24
1233 1887 1.134280 CAGGATCTCGTGCCATTCCTT 60.134 52.381 0.00 0.00 34.59 3.36
1344 2038 2.738521 CCTCCGTGCGTGTCCAAG 60.739 66.667 0.00 0.00 0.00 3.61
1410 2283 0.981183 TCGTGTCCCTATGGCAGTTT 59.019 50.000 0.00 0.00 0.00 2.66
1665 6817 2.404559 TGTGGAGTTGTAGAGGGTGTT 58.595 47.619 0.00 0.00 0.00 3.32
1771 6923 5.024118 TGGAGAACTCTTCCTACTTTAGGG 58.976 45.833 0.00 0.00 46.24 3.53
1780 6932 1.492764 CTACTTTAGGGCCGGGAAGA 58.507 55.000 18.90 6.24 0.00 2.87
1939 7093 9.044150 CAACCAAAATGTGTGTTCTCAATAATT 57.956 29.630 0.00 0.00 0.00 1.40
1996 7151 5.644636 ACCTTTTGTTTTGTCTCGTTGACTA 59.355 36.000 11.24 3.10 45.54 2.59
2026 7181 6.438763 CCTTTTGAGATACGAGCAAAACTTT 58.561 36.000 0.00 0.00 36.80 2.66
2029 7184 6.371809 TTGAGATACGAGCAAAACTTTTGT 57.628 33.333 14.36 3.36 0.00 2.83
2053 7504 1.742761 AAGGTGATGCGAGTTGATGG 58.257 50.000 0.00 0.00 0.00 3.51
2068 7519 0.183492 GATGGCAACTGCTATGGGGA 59.817 55.000 5.17 0.00 42.46 4.81
2069 7520 0.106519 ATGGCAACTGCTATGGGGAC 60.107 55.000 0.00 0.00 40.84 4.46
2070 7521 1.453928 GGCAACTGCTATGGGGACC 60.454 63.158 1.06 0.00 46.22 4.46
2088 7540 0.107848 CCGTAACACCTCATGGTCCC 60.108 60.000 0.00 0.00 46.60 4.46
2089 7541 0.611200 CGTAACACCTCATGGTCCCA 59.389 55.000 0.00 0.00 46.60 4.37
2090 7542 1.002659 CGTAACACCTCATGGTCCCAA 59.997 52.381 0.00 0.00 46.60 4.12
2118 7570 0.323725 AATCGCCCAGCTCAACCAAT 60.324 50.000 0.00 0.00 0.00 3.16
2125 7577 3.128764 GCCCAGCTCAACCAATAAACTAC 59.871 47.826 0.00 0.00 0.00 2.73
2126 7578 4.589908 CCCAGCTCAACCAATAAACTACT 58.410 43.478 0.00 0.00 0.00 2.57
2127 7579 5.741011 CCCAGCTCAACCAATAAACTACTA 58.259 41.667 0.00 0.00 0.00 1.82
2128 7580 5.585047 CCCAGCTCAACCAATAAACTACTAC 59.415 44.000 0.00 0.00 0.00 2.73
2129 7581 6.170506 CCAGCTCAACCAATAAACTACTACA 58.829 40.000 0.00 0.00 0.00 2.74
2130 7582 6.653320 CCAGCTCAACCAATAAACTACTACAA 59.347 38.462 0.00 0.00 0.00 2.41
2131 7583 7.148407 CCAGCTCAACCAATAAACTACTACAAG 60.148 40.741 0.00 0.00 0.00 3.16
2132 7584 7.602644 CAGCTCAACCAATAAACTACTACAAGA 59.397 37.037 0.00 0.00 0.00 3.02
2133 7585 7.819900 AGCTCAACCAATAAACTACTACAAGAG 59.180 37.037 0.00 0.00 0.00 2.85
2134 7586 7.413109 GCTCAACCAATAAACTACTACAAGAGC 60.413 40.741 0.00 0.00 35.18 4.09
2135 7587 6.588756 TCAACCAATAAACTACTACAAGAGCG 59.411 38.462 0.00 0.00 0.00 5.03
2136 7588 5.416947 ACCAATAAACTACTACAAGAGCGG 58.583 41.667 0.00 0.00 0.00 5.52
2137 7589 5.046807 ACCAATAAACTACTACAAGAGCGGT 60.047 40.000 0.00 0.00 0.00 5.68
2138 7590 5.873164 CCAATAAACTACTACAAGAGCGGTT 59.127 40.000 0.00 0.00 0.00 4.44
2139 7591 6.183360 CCAATAAACTACTACAAGAGCGGTTG 60.183 42.308 0.00 0.02 0.00 3.77
2140 7592 2.365408 ACTACTACAAGAGCGGTTGC 57.635 50.000 0.00 0.00 43.24 4.17
2150 7602 3.724494 GCGGTTGCTAGCAGATCC 58.276 61.111 18.45 18.89 38.39 3.36
2151 7603 1.889573 GCGGTTGCTAGCAGATCCC 60.890 63.158 18.45 14.74 38.39 3.85
2152 7604 1.826024 CGGTTGCTAGCAGATCCCT 59.174 57.895 18.45 0.00 0.00 4.20
2153 7605 1.040646 CGGTTGCTAGCAGATCCCTA 58.959 55.000 18.45 0.00 0.00 3.53
2154 7606 1.412710 CGGTTGCTAGCAGATCCCTAA 59.587 52.381 18.45 0.00 0.00 2.69
2155 7607 2.158957 CGGTTGCTAGCAGATCCCTAAA 60.159 50.000 18.45 0.00 0.00 1.85
2156 7608 3.681594 CGGTTGCTAGCAGATCCCTAAAA 60.682 47.826 18.45 0.00 0.00 1.52
2157 7609 4.464947 GGTTGCTAGCAGATCCCTAAAAT 58.535 43.478 18.45 0.00 0.00 1.82
2158 7610 4.889995 GGTTGCTAGCAGATCCCTAAAATT 59.110 41.667 18.45 0.00 0.00 1.82
2159 7611 6.062095 GGTTGCTAGCAGATCCCTAAAATTA 58.938 40.000 18.45 0.00 0.00 1.40
2160 7612 6.546034 GGTTGCTAGCAGATCCCTAAAATTAA 59.454 38.462 18.45 0.00 0.00 1.40
2161 7613 7.068226 GGTTGCTAGCAGATCCCTAAAATTAAA 59.932 37.037 18.45 0.00 0.00 1.52
2162 7614 8.466798 GTTGCTAGCAGATCCCTAAAATTAAAA 58.533 33.333 18.45 0.00 0.00 1.52
2163 7615 8.766994 TGCTAGCAGATCCCTAAAATTAAAAT 57.233 30.769 14.93 0.00 0.00 1.82
2225 7677 6.376018 CACAGTCTCCTAGTTTTAGTCTAGCT 59.624 42.308 0.00 0.00 35.07 3.32
2227 7679 6.376018 CAGTCTCCTAGTTTTAGTCTAGCTGT 59.624 42.308 0.00 0.00 35.07 4.40
2228 7680 7.553402 CAGTCTCCTAGTTTTAGTCTAGCTGTA 59.447 40.741 0.00 0.00 35.07 2.74
2246 7698 4.058817 CTGTAGGCGTTCTCAAGAAAAGT 58.941 43.478 0.00 0.00 35.58 2.66
2247 7699 4.448210 TGTAGGCGTTCTCAAGAAAAGTT 58.552 39.130 0.00 0.00 35.58 2.66
2248 7700 4.510340 TGTAGGCGTTCTCAAGAAAAGTTC 59.490 41.667 0.00 0.00 35.58 3.01
2249 7701 2.879026 AGGCGTTCTCAAGAAAAGTTCC 59.121 45.455 0.00 0.00 35.58 3.62
2252 7704 2.286833 CGTTCTCAAGAAAAGTTCCGCA 59.713 45.455 0.00 0.00 35.58 5.69
2259 7711 1.228459 AAAAGTTCCGCACCCTCCC 60.228 57.895 0.00 0.00 0.00 4.30
2260 7712 1.716028 AAAAGTTCCGCACCCTCCCT 61.716 55.000 0.00 0.00 0.00 4.20
2261 7713 2.125766 AAAGTTCCGCACCCTCCCTC 62.126 60.000 0.00 0.00 0.00 4.30
2264 7716 3.539593 TTCCGCACCCTCCCTCTCA 62.540 63.158 0.00 0.00 0.00 3.27
2267 7719 3.791586 GCACCCTCCCTCTCAGCC 61.792 72.222 0.00 0.00 0.00 4.85
2271 7723 3.847602 CCTCCCTCTCAGCCGCAG 61.848 72.222 0.00 0.00 0.00 5.18
2287 7739 1.228675 CAGCTTTCCTGCCCAACCT 60.229 57.895 0.00 0.00 34.21 3.50
2292 7744 2.725203 TTTCCTGCCCAACCTCGACG 62.725 60.000 0.00 0.00 0.00 5.12
2317 7769 4.680237 CCCTTGCCGCGACACTGA 62.680 66.667 8.23 0.00 0.00 3.41
2318 7770 2.434884 CCTTGCCGCGACACTGAT 60.435 61.111 8.23 0.00 0.00 2.90
2319 7771 2.456119 CCTTGCCGCGACACTGATC 61.456 63.158 8.23 0.00 0.00 2.92
2320 7772 2.792290 CTTGCCGCGACACTGATCG 61.792 63.158 8.23 2.49 45.09 3.69
2321 7773 3.567478 TTGCCGCGACACTGATCGT 62.567 57.895 8.23 0.00 44.13 3.73
2322 7774 3.248171 GCCGCGACACTGATCGTC 61.248 66.667 8.23 0.00 44.13 4.20
2329 7781 2.105128 CACTGATCGTCCTCGGGC 59.895 66.667 0.00 0.00 37.69 6.13
2331 7783 2.835431 CTGATCGTCCTCGGGCCT 60.835 66.667 0.84 0.00 37.69 5.19
2333 7785 2.833582 GATCGTCCTCGGGCCTGA 60.834 66.667 15.16 15.16 37.69 3.86
2339 7791 3.083349 CCTCGGGCCTGATGACCA 61.083 66.667 16.52 0.00 0.00 4.02
2346 7798 2.109126 GCCTGATGACCAGCGGAAC 61.109 63.158 1.50 0.00 41.57 3.62
2347 7799 1.296392 CCTGATGACCAGCGGAACA 59.704 57.895 1.50 2.59 41.57 3.18
2348 7800 0.107508 CCTGATGACCAGCGGAACAT 60.108 55.000 1.50 6.65 41.57 2.71
2351 7803 3.270027 CTGATGACCAGCGGAACATAAA 58.730 45.455 1.50 0.58 35.89 1.40
2353 7805 3.055458 TGATGACCAGCGGAACATAAAGA 60.055 43.478 1.50 0.00 0.00 2.52
2364 7816 1.652947 ACATAAAGACACTCCCCCGT 58.347 50.000 0.00 0.00 0.00 5.28
2367 7819 0.035739 TAAAGACACTCCCCCGTTGC 59.964 55.000 0.00 0.00 0.00 4.17
2373 7825 4.722700 CTCCCCCGTTGCACCCTG 62.723 72.222 0.00 0.00 0.00 4.45
2404 7856 2.125326 CGGTGCCGGAGACCTATCA 61.125 63.158 18.21 0.00 35.56 2.15
2406 7858 1.442148 GTGCCGGAGACCTATCACC 59.558 63.158 5.05 0.00 32.50 4.02
2413 7865 1.334243 GGAGACCTATCACCGACGAAG 59.666 57.143 0.00 0.00 0.00 3.79
2421 7873 2.536761 TCACCGACGAAGAATTTGGT 57.463 45.000 0.00 0.00 32.29 3.67
2425 7877 0.871722 CGACGAAGAATTTGGTGCCA 59.128 50.000 0.00 0.00 32.29 4.92
2438 7890 1.298041 GTGCCACAACACCGAAACG 60.298 57.895 0.00 0.00 34.35 3.60
2440 7892 0.816018 TGCCACAACACCGAAACGAT 60.816 50.000 0.00 0.00 0.00 3.73
2441 7893 0.385473 GCCACAACACCGAAACGATG 60.385 55.000 0.00 0.00 0.00 3.84
2444 7896 1.595328 CACAACACCGAAACGATGACA 59.405 47.619 0.00 0.00 0.00 3.58
2453 7905 2.742053 CGAAACGATGACAACAAGGGAT 59.258 45.455 0.00 0.00 0.00 3.85
2458 7910 4.906618 ACGATGACAACAAGGGATAAACT 58.093 39.130 0.00 0.00 0.00 2.66
2463 7915 6.817765 TGACAACAAGGGATAAACTTCATC 57.182 37.500 0.00 0.00 0.00 2.92
2469 7921 6.001460 ACAAGGGATAAACTTCATCGACAAA 58.999 36.000 0.00 0.00 0.00 2.83
2493 7945 4.031426 GGTTCGTCGTTGATGACTATTGTC 59.969 45.833 0.00 0.00 43.20 3.18
2513 7965 2.502130 TCACTCACACAACCACAACCTA 59.498 45.455 0.00 0.00 0.00 3.08
2519 7971 4.000988 CACACAACCACAACCTACCTATC 58.999 47.826 0.00 0.00 0.00 2.08
2520 7972 3.649023 ACACAACCACAACCTACCTATCA 59.351 43.478 0.00 0.00 0.00 2.15
2528 7980 4.225267 CACAACCTACCTATCACCCTTTCT 59.775 45.833 0.00 0.00 0.00 2.52
2529 7981 4.470304 ACAACCTACCTATCACCCTTTCTC 59.530 45.833 0.00 0.00 0.00 2.87
2530 7982 3.297736 ACCTACCTATCACCCTTTCTCG 58.702 50.000 0.00 0.00 0.00 4.04
2535 7987 0.744874 TATCACCCTTTCTCGAGCCG 59.255 55.000 7.81 0.00 0.00 5.52
2536 7988 1.961180 ATCACCCTTTCTCGAGCCGG 61.961 60.000 7.81 7.50 0.00 6.13
2538 7990 3.775654 CCCTTTCTCGAGCCGGCT 61.776 66.667 33.48 33.48 0.00 5.52
2539 7991 2.510238 CCTTTCTCGAGCCGGCTG 60.510 66.667 38.41 25.52 0.00 4.85
2541 7993 1.807573 CTTTCTCGAGCCGGCTGAC 60.808 63.158 38.41 20.46 0.00 3.51
2544 7996 2.048222 CTCGAGCCGGCTGACAAA 60.048 61.111 38.41 13.14 0.00 2.83
2545 7997 2.357034 TCGAGCCGGCTGACAAAC 60.357 61.111 38.41 17.88 0.00 2.93
2546 7998 3.777925 CGAGCCGGCTGACAAACG 61.778 66.667 38.41 26.17 0.00 3.60
2563 8015 3.497031 GGCAACGTCGGCTAAGGC 61.497 66.667 11.34 0.00 37.82 4.35
2573 8025 3.243128 GGCTAAGGCGAAGGACAAA 57.757 52.632 0.00 0.00 39.81 2.83
2582 8034 0.865769 CGAAGGACAAAACGACAGGG 59.134 55.000 0.00 0.00 0.00 4.45
2584 8036 0.549469 AAGGACAAAACGACAGGGGT 59.451 50.000 0.00 0.00 0.00 4.95
2587 8039 0.464916 GACAAAACGACAGGGGTGGT 60.465 55.000 0.00 0.00 37.59 4.16
2597 8049 2.040412 GACAGGGGTGGTGAAGAAGAAT 59.960 50.000 0.00 0.00 0.00 2.40
2603 8055 3.244561 GGGTGGTGAAGAAGAATGAGACA 60.245 47.826 0.00 0.00 0.00 3.41
2605 8057 5.006386 GGTGGTGAAGAAGAATGAGACAAT 58.994 41.667 0.00 0.00 0.00 2.71
2614 8066 4.227864 AGAATGAGACAATGACCTTCCC 57.772 45.455 0.00 0.00 0.00 3.97
2615 8067 2.698855 ATGAGACAATGACCTTCCCG 57.301 50.000 0.00 0.00 0.00 5.14
2617 8069 1.275291 TGAGACAATGACCTTCCCGAC 59.725 52.381 0.00 0.00 0.00 4.79
2618 8070 0.246635 AGACAATGACCTTCCCGACG 59.753 55.000 0.00 0.00 0.00 5.12
2619 8071 1.359459 GACAATGACCTTCCCGACGC 61.359 60.000 0.00 0.00 0.00 5.19
2620 8072 1.079127 CAATGACCTTCCCGACGCT 60.079 57.895 0.00 0.00 0.00 5.07
2626 8078 3.391382 CTTCCCGACGCTTCCCCT 61.391 66.667 0.00 0.00 0.00 4.79
2635 8087 2.184579 GCTTCCCCTTCGACCTCG 59.815 66.667 0.00 0.00 41.45 4.63
2637 8089 3.701604 CTTCCCCTTCGACCTCGCG 62.702 68.421 0.00 0.00 39.60 5.87
2641 8093 4.421479 CCTTCGACCTCGCGCAGT 62.421 66.667 8.75 0.00 39.60 4.40
2657 8109 1.741706 GCAGTGCCGACTACTACTACA 59.258 52.381 2.85 0.00 0.00 2.74
2659 8111 2.005451 AGTGCCGACTACTACTACACG 58.995 52.381 0.00 0.00 0.00 4.49
2660 8112 1.063174 GTGCCGACTACTACTACACGG 59.937 57.143 0.00 0.00 42.63 4.94
2661 8113 1.339055 TGCCGACTACTACTACACGGT 60.339 52.381 0.00 0.00 41.92 4.83
2667 8119 3.870419 GACTACTACTACACGGTCTCCTG 59.130 52.174 0.00 0.00 0.00 3.86
2674 8126 3.005539 ACGGTCTCCTGCTGCCAT 61.006 61.111 0.00 0.00 0.00 4.40
2685 8137 4.371417 CTGCCATGCCACCACCCT 62.371 66.667 0.00 0.00 0.00 4.34
2698 8150 1.454539 CACCCTTTTCACCTCCGGT 59.545 57.895 0.00 0.00 35.62 5.28
2699 8151 0.179001 CACCCTTTTCACCTCCGGTT 60.179 55.000 0.00 0.00 31.02 4.44
2718 8170 0.469917 TTCCGAGGATGGCTTGGATC 59.530 55.000 0.00 0.00 34.59 3.36
2722 8174 1.384502 AGGATGGCTTGGATCCGGA 60.385 57.895 6.61 6.61 43.78 5.14
2733 8185 2.045634 ATCCGGACGAGACCACGA 60.046 61.111 6.12 0.00 37.03 4.35
2739 8191 3.384014 GACGAGACCACGAGCGAGG 62.384 68.421 4.81 4.81 37.03 4.63
2741 8193 4.500116 GAGACCACGAGCGAGGCC 62.500 72.222 6.27 0.00 0.00 5.19
2743 8195 4.373116 GACCACGAGCGAGGCCAA 62.373 66.667 5.01 0.00 0.00 4.52
2744 8196 3.665675 GACCACGAGCGAGGCCAAT 62.666 63.158 5.01 0.00 0.00 3.16
2747 8199 2.034879 CACGAGCGAGGCCAATGTT 61.035 57.895 5.01 0.00 0.00 2.71
2750 8202 1.021390 CGAGCGAGGCCAATGTTCTT 61.021 55.000 5.01 0.00 0.00 2.52
2752 8204 0.250901 AGCGAGGCCAATGTTCTTGT 60.251 50.000 5.01 0.00 0.00 3.16
2761 8213 3.382546 GCCAATGTTCTTGTGGATATGCT 59.617 43.478 0.00 0.00 34.05 3.79
2762 8214 4.498682 GCCAATGTTCTTGTGGATATGCTC 60.499 45.833 0.00 0.00 34.05 4.26
2763 8215 4.260907 CCAATGTTCTTGTGGATATGCTCG 60.261 45.833 0.00 0.00 34.05 5.03
2764 8216 3.885724 TGTTCTTGTGGATATGCTCGA 57.114 42.857 0.00 0.00 0.00 4.04
2765 8217 3.785486 TGTTCTTGTGGATATGCTCGAG 58.215 45.455 8.45 8.45 0.00 4.04
2769 8221 4.461198 TCTTGTGGATATGCTCGAGAGTA 58.539 43.478 18.75 8.17 0.00 2.59
2847 8310 6.410942 AATTGCTAGGTTCTCTTTGCTTTT 57.589 33.333 0.00 0.00 0.00 2.27
2848 8311 4.836125 TGCTAGGTTCTCTTTGCTTTTG 57.164 40.909 0.00 0.00 0.00 2.44
2863 8326 4.858935 TGCTTTTGTAGTGAGCAATTGAC 58.141 39.130 10.34 2.82 42.89 3.18
2864 8327 4.337836 TGCTTTTGTAGTGAGCAATTGACA 59.662 37.500 10.34 5.64 42.89 3.58
2865 8328 4.676924 GCTTTTGTAGTGAGCAATTGACAC 59.323 41.667 20.72 20.72 36.45 3.67
2866 8329 5.506317 GCTTTTGTAGTGAGCAATTGACACT 60.506 40.000 28.17 28.17 45.06 3.55
2867 8330 6.293407 GCTTTTGTAGTGAGCAATTGACACTA 60.293 38.462 26.75 26.75 43.27 2.74
2872 8335 5.078411 AGTGAGCAATTGACACTACTAGG 57.922 43.478 25.93 0.00 42.01 3.02
2873 8336 4.772624 AGTGAGCAATTGACACTACTAGGA 59.227 41.667 25.93 0.00 42.01 2.94
2874 8337 5.246203 AGTGAGCAATTGACACTACTAGGAA 59.754 40.000 25.93 0.00 42.01 3.36
2875 8338 5.932303 GTGAGCAATTGACACTACTAGGAAA 59.068 40.000 20.89 0.00 0.00 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.876714 ACAGACGCGACACACACAC 60.877 57.895 15.93 0.00 0.00 3.82
4 5 2.636227 CGACACAGACGCGACACAC 61.636 63.158 15.93 0.00 0.00 3.82
16 17 1.214325 CGTACCCATCTGCGACACA 59.786 57.895 0.00 0.00 0.00 3.72
17 18 1.518572 CCGTACCCATCTGCGACAC 60.519 63.158 0.00 0.00 0.00 3.67
18 19 1.679641 TCCGTACCCATCTGCGACA 60.680 57.895 0.00 0.00 0.00 4.35
19 20 1.226888 GTCCGTACCCATCTGCGAC 60.227 63.158 0.00 0.00 0.00 5.19
20 21 2.767445 CGTCCGTACCCATCTGCGA 61.767 63.158 0.00 0.00 0.00 5.10
21 22 2.278596 CGTCCGTACCCATCTGCG 60.279 66.667 0.00 0.00 0.00 5.18
22 23 1.065928 CTCGTCCGTACCCATCTGC 59.934 63.158 0.00 0.00 0.00 4.26
23 24 0.663688 CTCTCGTCCGTACCCATCTG 59.336 60.000 0.00 0.00 0.00 2.90
24 25 1.102222 GCTCTCGTCCGTACCCATCT 61.102 60.000 0.00 0.00 0.00 2.90
25 26 1.359475 GCTCTCGTCCGTACCCATC 59.641 63.158 0.00 0.00 0.00 3.51
26 27 2.125961 GGCTCTCGTCCGTACCCAT 61.126 63.158 0.00 0.00 0.00 4.00
27 28 2.753043 GGCTCTCGTCCGTACCCA 60.753 66.667 0.00 0.00 0.00 4.51
28 29 2.753043 TGGCTCTCGTCCGTACCC 60.753 66.667 0.00 0.00 0.00 3.69
29 30 2.488820 GTGGCTCTCGTCCGTACC 59.511 66.667 0.00 0.00 0.00 3.34
30 31 2.488820 GGTGGCTCTCGTCCGTAC 59.511 66.667 0.00 0.00 0.00 3.67
31 32 3.129502 CGGTGGCTCTCGTCCGTA 61.130 66.667 0.00 0.00 38.45 4.02
33 34 4.778415 CACGGTGGCTCTCGTCCG 62.778 72.222 0.00 0.00 46.98 4.79
35 36 4.057428 AGCACGGTGGCTCTCGTC 62.057 66.667 10.60 0.00 41.05 4.20
48 49 3.503363 GCTGGATGGTGCGAGCAC 61.503 66.667 18.94 18.94 45.49 4.40
49 50 4.019312 TGCTGGATGGTGCGAGCA 62.019 61.111 0.00 0.00 45.40 4.26
50 51 2.515523 ATGCTGGATGGTGCGAGC 60.516 61.111 0.00 0.00 39.67 5.03
51 52 2.831366 GCATGCTGGATGGTGCGAG 61.831 63.158 11.37 0.00 31.99 5.03
52 53 1.970352 TAGCATGCTGGATGGTGCGA 61.970 55.000 30.42 2.54 42.87 5.10
53 54 1.504647 CTAGCATGCTGGATGGTGCG 61.505 60.000 30.42 10.26 42.87 5.34
54 55 1.170919 CCTAGCATGCTGGATGGTGC 61.171 60.000 30.53 4.67 42.87 5.01
55 56 0.471191 TCCTAGCATGCTGGATGGTG 59.529 55.000 30.53 14.40 42.87 4.17
56 57 1.442773 ATCCTAGCATGCTGGATGGT 58.557 50.000 32.86 20.19 45.03 3.55
59 60 3.646787 GCATCCTAGCATGCTGGAT 57.353 52.632 30.31 30.31 45.03 3.41
73 74 2.434185 TGTTCACGCCGGAGCATC 60.434 61.111 5.05 0.00 39.83 3.91
74 75 2.742372 GTGTTCACGCCGGAGCAT 60.742 61.111 5.05 0.00 39.83 3.79
77 78 3.103911 GACGTGTTCACGCCGGAG 61.104 66.667 22.35 3.72 36.44 4.63
78 79 4.986587 CGACGTGTTCACGCCGGA 62.987 66.667 21.80 0.00 35.48 5.14
80 81 3.749373 GACGACGTGTTCACGCCG 61.749 66.667 25.98 25.98 44.06 6.46
81 82 3.400590 GGACGACGTGTTCACGCC 61.401 66.667 22.35 12.69 36.44 5.68
82 83 3.749373 CGGACGACGTGTTCACGC 61.749 66.667 22.35 14.83 37.93 5.34
92 93 3.188786 GATGGCTGCACGGACGAC 61.189 66.667 0.50 0.00 0.00 4.34
93 94 3.356639 GAGATGGCTGCACGGACGA 62.357 63.158 0.50 0.00 0.00 4.20
94 95 2.887568 GAGATGGCTGCACGGACG 60.888 66.667 0.50 0.00 0.00 4.79
95 96 2.887568 CGAGATGGCTGCACGGAC 60.888 66.667 0.50 0.00 0.00 4.79
96 97 4.147449 CCGAGATGGCTGCACGGA 62.147 66.667 3.74 0.00 45.31 4.69
98 99 3.190849 CACCGAGATGGCTGCACG 61.191 66.667 0.50 0.00 43.94 5.34
99 100 2.103042 GTCACCGAGATGGCTGCAC 61.103 63.158 0.50 0.00 43.94 4.57
100 101 2.265739 GTCACCGAGATGGCTGCA 59.734 61.111 0.50 0.00 43.94 4.41
101 102 2.887568 CGTCACCGAGATGGCTGC 60.888 66.667 0.00 0.00 43.94 5.25
102 103 2.885113 TCGTCACCGAGATGGCTG 59.115 61.111 0.00 0.00 43.94 4.85
144 145 2.278857 CCCATCTCGCCGAAGTCG 60.279 66.667 0.00 0.00 39.44 4.18
145 146 2.586357 GCCCATCTCGCCGAAGTC 60.586 66.667 0.00 0.00 0.00 3.01
146 147 4.162690 GGCCCATCTCGCCGAAGT 62.163 66.667 0.00 0.00 36.47 3.01
172 173 0.967380 AGTTGCAGGGCTATGGTTGC 60.967 55.000 0.00 0.00 37.09 4.17
173 174 0.813184 CAGTTGCAGGGCTATGGTTG 59.187 55.000 0.00 0.00 0.00 3.77
174 175 0.967380 GCAGTTGCAGGGCTATGGTT 60.967 55.000 0.00 0.00 41.59 3.67
175 176 1.379044 GCAGTTGCAGGGCTATGGT 60.379 57.895 0.00 0.00 41.59 3.55
176 177 2.475466 CGCAGTTGCAGGGCTATGG 61.475 63.158 4.84 0.00 42.21 2.74
177 178 1.450134 TCGCAGTTGCAGGGCTATG 60.450 57.895 4.84 0.00 42.21 2.23
178 179 1.450312 GTCGCAGTTGCAGGGCTAT 60.450 57.895 4.84 0.00 42.21 2.97
179 180 2.047274 GTCGCAGTTGCAGGGCTA 60.047 61.111 4.84 0.00 42.21 3.93
180 181 3.890936 GAGTCGCAGTTGCAGGGCT 62.891 63.158 4.84 0.00 42.21 5.19
181 182 3.426568 GAGTCGCAGTTGCAGGGC 61.427 66.667 4.84 0.00 42.21 5.19
182 183 2.743928 GGAGTCGCAGTTGCAGGG 60.744 66.667 4.84 0.00 42.21 4.45
183 184 2.031012 TGGAGTCGCAGTTGCAGG 59.969 61.111 4.84 0.00 42.21 4.85
184 185 2.320587 GGTGGAGTCGCAGTTGCAG 61.321 63.158 4.84 0.00 42.21 4.41
185 186 2.280797 GGTGGAGTCGCAGTTGCA 60.281 61.111 4.84 0.00 42.21 4.08
186 187 1.639298 GATGGTGGAGTCGCAGTTGC 61.639 60.000 0.00 0.00 37.78 4.17
187 188 1.354337 CGATGGTGGAGTCGCAGTTG 61.354 60.000 0.00 0.00 0.00 3.16
188 189 1.079819 CGATGGTGGAGTCGCAGTT 60.080 57.895 0.00 0.00 0.00 3.16
189 190 2.573869 CGATGGTGGAGTCGCAGT 59.426 61.111 0.00 0.00 0.00 4.40
193 194 1.811266 CAAGGCGATGGTGGAGTCG 60.811 63.158 0.00 0.00 40.62 4.18
194 195 1.450312 CCAAGGCGATGGTGGAGTC 60.450 63.158 4.42 0.00 35.65 3.36
195 196 2.671070 CCAAGGCGATGGTGGAGT 59.329 61.111 4.42 0.00 35.65 3.85
201 202 0.179073 CCAGTAGACCAAGGCGATGG 60.179 60.000 10.34 10.34 46.38 3.51
202 203 0.811616 GCCAGTAGACCAAGGCGATG 60.812 60.000 0.00 0.00 37.41 3.84
203 204 1.522569 GCCAGTAGACCAAGGCGAT 59.477 57.895 0.00 0.00 37.41 4.58
204 205 2.978824 GCCAGTAGACCAAGGCGA 59.021 61.111 0.00 0.00 37.41 5.54
207 208 0.392193 CAGCAGCCAGTAGACCAAGG 60.392 60.000 0.00 0.00 0.00 3.61
208 209 0.392193 CCAGCAGCCAGTAGACCAAG 60.392 60.000 0.00 0.00 0.00 3.61
209 210 1.679311 CCAGCAGCCAGTAGACCAA 59.321 57.895 0.00 0.00 0.00 3.67
210 211 2.293318 CCCAGCAGCCAGTAGACCA 61.293 63.158 0.00 0.00 0.00 4.02
211 212 2.586792 CCCAGCAGCCAGTAGACC 59.413 66.667 0.00 0.00 0.00 3.85
212 213 2.124942 GCCCAGCAGCCAGTAGAC 60.125 66.667 0.00 0.00 0.00 2.59
213 214 1.997311 ATGCCCAGCAGCCAGTAGA 60.997 57.895 0.00 0.00 43.65 2.59
214 215 1.822613 CATGCCCAGCAGCCAGTAG 60.823 63.158 0.00 0.00 43.65 2.57
215 216 2.273123 CATGCCCAGCAGCCAGTA 59.727 61.111 0.00 0.00 43.65 2.74
220 221 4.487412 GAACGCATGCCCAGCAGC 62.487 66.667 13.15 0.00 43.65 5.25
221 222 3.818787 GGAACGCATGCCCAGCAG 61.819 66.667 13.15 0.00 43.65 4.24
222 223 4.657408 TGGAACGCATGCCCAGCA 62.657 61.111 13.15 0.00 44.86 4.41
223 224 4.120331 GTGGAACGCATGCCCAGC 62.120 66.667 13.15 5.38 39.55 4.85
234 235 2.672996 AGCACATGGCCGTGGAAC 60.673 61.111 28.37 16.63 46.50 3.62
235 236 2.672651 CAGCACATGGCCGTGGAA 60.673 61.111 28.37 0.00 46.50 3.53
236 237 4.720902 CCAGCACATGGCCGTGGA 62.721 66.667 28.37 0.00 43.83 4.02
244 245 0.250858 TGGGAGACAACCAGCACATG 60.251 55.000 0.00 0.00 33.23 3.21
245 246 0.250901 GTGGGAGACAACCAGCACAT 60.251 55.000 0.00 0.00 39.00 3.21
246 247 1.148273 GTGGGAGACAACCAGCACA 59.852 57.895 0.00 0.00 39.00 4.57
247 248 1.961277 CGTGGGAGACAACCAGCAC 60.961 63.158 0.00 0.00 39.00 4.40
248 249 2.425592 CGTGGGAGACAACCAGCA 59.574 61.111 0.00 0.00 39.00 4.41
249 250 1.961277 CACGTGGGAGACAACCAGC 60.961 63.158 7.95 0.00 39.00 4.85
250 251 0.880278 CACACGTGGGAGACAACCAG 60.880 60.000 21.57 0.00 39.00 4.00
251 252 1.145156 CACACGTGGGAGACAACCA 59.855 57.895 21.57 0.00 35.14 3.67
252 253 2.251642 GCACACGTGGGAGACAACC 61.252 63.158 24.95 0.00 0.00 3.77
253 254 1.227556 AGCACACGTGGGAGACAAC 60.228 57.895 24.95 1.65 0.00 3.32
254 255 1.227527 CAGCACACGTGGGAGACAA 60.228 57.895 24.95 0.00 0.00 3.18
255 256 2.421314 CAGCACACGTGGGAGACA 59.579 61.111 24.95 0.00 0.00 3.41
256 257 2.357517 CCAGCACACGTGGGAGAC 60.358 66.667 24.95 3.41 0.00 3.36
257 258 2.842462 ACCAGCACACGTGGGAGA 60.842 61.111 24.95 0.00 39.65 3.71
258 259 2.357517 GACCAGCACACGTGGGAG 60.358 66.667 24.95 13.11 39.65 4.30
259 260 4.293648 CGACCAGCACACGTGGGA 62.294 66.667 24.95 0.00 39.65 4.37
281 282 4.805231 TGGCCACGATACGCACGG 62.805 66.667 0.00 0.00 34.93 4.94
282 283 3.550992 GTGGCCACGATACGCACG 61.551 66.667 22.49 0.00 0.00 5.34
312 313 2.907897 ATAAGGCAGCCGACACGCTC 62.908 60.000 5.55 0.00 36.82 5.03
313 314 2.521958 AATAAGGCAGCCGACACGCT 62.522 55.000 5.55 0.00 40.65 5.07
314 315 1.644786 AAATAAGGCAGCCGACACGC 61.645 55.000 5.55 0.00 0.00 5.34
315 316 0.096976 CAAATAAGGCAGCCGACACG 59.903 55.000 5.55 0.00 0.00 4.49
316 317 1.135689 CACAAATAAGGCAGCCGACAC 60.136 52.381 5.55 0.00 0.00 3.67
317 318 1.164411 CACAAATAAGGCAGCCGACA 58.836 50.000 5.55 0.00 0.00 4.35
318 319 1.135689 CACACAAATAAGGCAGCCGAC 60.136 52.381 5.55 0.00 0.00 4.79
319 320 1.164411 CACACAAATAAGGCAGCCGA 58.836 50.000 5.55 0.00 0.00 5.54
320 321 0.881118 ACACACAAATAAGGCAGCCG 59.119 50.000 5.55 0.00 0.00 5.52
321 322 1.669795 GCACACACAAATAAGGCAGCC 60.670 52.381 1.84 1.84 0.00 4.85
322 323 1.270550 AGCACACACAAATAAGGCAGC 59.729 47.619 0.00 0.00 0.00 5.25
323 324 4.637534 AGATAGCACACACAAATAAGGCAG 59.362 41.667 0.00 0.00 0.00 4.85
324 325 4.588899 AGATAGCACACACAAATAAGGCA 58.411 39.130 0.00 0.00 0.00 4.75
325 326 5.335127 CAAGATAGCACACACAAATAAGGC 58.665 41.667 0.00 0.00 0.00 4.35
326 327 5.124457 AGCAAGATAGCACACACAAATAAGG 59.876 40.000 0.00 0.00 36.85 2.69
327 328 6.187125 AGCAAGATAGCACACACAAATAAG 57.813 37.500 0.00 0.00 36.85 1.73
328 329 7.679400 GCATAGCAAGATAGCACACACAAATAA 60.679 37.037 0.00 0.00 36.85 1.40
329 330 6.238456 GCATAGCAAGATAGCACACACAAATA 60.238 38.462 0.00 0.00 36.85 1.40
330 331 5.449588 GCATAGCAAGATAGCACACACAAAT 60.450 40.000 0.00 0.00 36.85 2.32
331 332 4.142622 GCATAGCAAGATAGCACACACAAA 60.143 41.667 0.00 0.00 36.85 2.83
332 333 3.374988 GCATAGCAAGATAGCACACACAA 59.625 43.478 0.00 0.00 36.85 3.33
333 334 2.938451 GCATAGCAAGATAGCACACACA 59.062 45.455 0.00 0.00 36.85 3.72
334 335 2.938451 TGCATAGCAAGATAGCACACAC 59.062 45.455 0.00 0.00 34.76 3.82
335 336 3.264998 TGCATAGCAAGATAGCACACA 57.735 42.857 0.00 0.00 34.76 3.72
336 337 4.825546 AATGCATAGCAAGATAGCACAC 57.174 40.909 0.00 0.00 43.62 3.82
337 338 5.840243 AAAATGCATAGCAAGATAGCACA 57.160 34.783 0.00 0.00 43.62 4.57
373 374 9.679661 TGGTTGAGATTTAAAAGCAGATATACA 57.320 29.630 0.00 0.00 0.00 2.29
376 377 9.412460 TGATGGTTGAGATTTAAAAGCAGATAT 57.588 29.630 0.00 0.00 35.06 1.63
377 378 8.806429 TGATGGTTGAGATTTAAAAGCAGATA 57.194 30.769 0.00 0.00 35.06 1.98
378 379 7.707624 TGATGGTTGAGATTTAAAAGCAGAT 57.292 32.000 0.00 0.00 35.06 2.90
379 380 7.523293 TTGATGGTTGAGATTTAAAAGCAGA 57.477 32.000 0.00 0.00 35.06 4.26
380 381 8.653338 CATTTGATGGTTGAGATTTAAAAGCAG 58.347 33.333 0.00 0.00 35.06 4.24
381 382 7.603404 CCATTTGATGGTTGAGATTTAAAAGCA 59.397 33.333 0.00 0.00 45.54 3.91
382 383 7.967178 CCATTTGATGGTTGAGATTTAAAAGC 58.033 34.615 0.00 0.00 45.54 3.51
431 432 7.390440 TCATGGTTCTTCATACGTCATCTTTTT 59.610 33.333 0.00 0.00 0.00 1.94
432 433 6.878923 TCATGGTTCTTCATACGTCATCTTTT 59.121 34.615 0.00 0.00 0.00 2.27
433 434 6.406370 TCATGGTTCTTCATACGTCATCTTT 58.594 36.000 0.00 0.00 0.00 2.52
434 435 5.977635 TCATGGTTCTTCATACGTCATCTT 58.022 37.500 0.00 0.00 0.00 2.40
435 436 5.598416 TCATGGTTCTTCATACGTCATCT 57.402 39.130 0.00 0.00 0.00 2.90
436 437 6.662414 TTTCATGGTTCTTCATACGTCATC 57.338 37.500 0.00 0.00 0.00 2.92
437 438 5.065218 GCTTTCATGGTTCTTCATACGTCAT 59.935 40.000 0.00 0.00 0.00 3.06
438 439 4.391830 GCTTTCATGGTTCTTCATACGTCA 59.608 41.667 0.00 0.00 0.00 4.35
439 440 4.201822 GGCTTTCATGGTTCTTCATACGTC 60.202 45.833 0.00 0.00 0.00 4.34
440 441 3.689649 GGCTTTCATGGTTCTTCATACGT 59.310 43.478 0.00 0.00 0.00 3.57
441 442 3.941483 AGGCTTTCATGGTTCTTCATACG 59.059 43.478 0.00 0.00 0.00 3.06
442 443 4.336713 GGAGGCTTTCATGGTTCTTCATAC 59.663 45.833 0.00 0.00 0.00 2.39
443 444 4.526970 GGAGGCTTTCATGGTTCTTCATA 58.473 43.478 0.00 0.00 0.00 2.15
444 445 3.359950 GGAGGCTTTCATGGTTCTTCAT 58.640 45.455 0.00 0.00 0.00 2.57
445 446 2.795329 GGAGGCTTTCATGGTTCTTCA 58.205 47.619 0.00 0.00 0.00 3.02
446 447 1.740025 CGGAGGCTTTCATGGTTCTTC 59.260 52.381 0.00 0.00 0.00 2.87
447 448 1.073923 ACGGAGGCTTTCATGGTTCTT 59.926 47.619 0.00 0.00 0.00 2.52
448 449 0.693049 ACGGAGGCTTTCATGGTTCT 59.307 50.000 0.00 0.00 0.00 3.01
449 450 1.534729 AACGGAGGCTTTCATGGTTC 58.465 50.000 0.00 0.00 0.00 3.62
450 451 1.995376 AAACGGAGGCTTTCATGGTT 58.005 45.000 0.00 0.00 0.00 3.67
451 452 1.995376 AAAACGGAGGCTTTCATGGT 58.005 45.000 0.00 0.00 0.00 3.55
495 496 7.667043 TTGTCATCCAAGTGTATCTGTTAAC 57.333 36.000 0.00 0.00 0.00 2.01
505 506 4.261741 GCATCAGTTTTGTCATCCAAGTGT 60.262 41.667 0.00 0.00 33.75 3.55
532 533 4.309099 TGTATGGTTACCGTCAGTCAAAC 58.691 43.478 0.00 0.00 0.00 2.93
586 587 5.276348 GCATGTGTCAGCTAAACAACAAAAC 60.276 40.000 2.87 0.00 0.00 2.43
615 616 8.887717 AGACTTGATACTCAGTTTAAATCATGC 58.112 33.333 0.00 0.00 0.00 4.06
666 667 2.033602 GCGCCACCTAACCCAAGT 59.966 61.111 0.00 0.00 0.00 3.16
680 681 2.680841 TGTACATGACTAATTTGGGCGC 59.319 45.455 0.00 0.00 0.00 6.53
681 682 3.242739 GCTGTACATGACTAATTTGGGCG 60.243 47.826 0.00 0.00 0.00 6.13
682 683 3.947834 AGCTGTACATGACTAATTTGGGC 59.052 43.478 0.00 0.00 0.00 5.36
683 684 5.185454 TGAGCTGTACATGACTAATTTGGG 58.815 41.667 0.00 0.00 0.00 4.12
684 685 5.220739 GCTGAGCTGTACATGACTAATTTGG 60.221 44.000 0.00 0.00 0.00 3.28
685 686 5.583854 AGCTGAGCTGTACATGACTAATTTG 59.416 40.000 5.97 0.00 37.57 2.32
687 688 5.350504 AGCTGAGCTGTACATGACTAATT 57.649 39.130 5.97 0.00 37.57 1.40
701 702 2.356793 GCGACACACAGCTGAGCT 60.357 61.111 23.35 0.00 40.77 4.09
702 703 3.418068 GGCGACACACAGCTGAGC 61.418 66.667 23.35 14.41 0.00 4.26
703 704 2.029518 TGGCGACACACAGCTGAG 59.970 61.111 23.35 16.23 33.40 3.35
714 715 7.011828 AGTTAATATGTAAACACATGGCGAC 57.988 36.000 0.00 0.00 0.00 5.19
715 716 7.982919 ACTAGTTAATATGTAAACACATGGCGA 59.017 33.333 0.00 0.00 0.00 5.54
716 717 8.138365 ACTAGTTAATATGTAAACACATGGCG 57.862 34.615 0.00 0.00 0.00 5.69
726 727 8.781196 CCACGAGCTCTACTAGTTAATATGTAA 58.219 37.037 12.85 0.00 30.96 2.41
727 728 7.935755 ACCACGAGCTCTACTAGTTAATATGTA 59.064 37.037 12.85 0.00 30.96 2.29
728 729 6.771749 ACCACGAGCTCTACTAGTTAATATGT 59.228 38.462 12.85 0.00 30.96 2.29
729 730 7.204496 ACCACGAGCTCTACTAGTTAATATG 57.796 40.000 12.85 0.00 30.96 1.78
730 731 6.430616 GGACCACGAGCTCTACTAGTTAATAT 59.569 42.308 12.85 0.00 30.96 1.28
733 734 3.944015 GGACCACGAGCTCTACTAGTTAA 59.056 47.826 12.85 0.00 30.96 2.01
734 735 3.054875 TGGACCACGAGCTCTACTAGTTA 60.055 47.826 12.85 0.00 30.96 2.24
736 737 1.281287 TGGACCACGAGCTCTACTAGT 59.719 52.381 12.85 0.00 34.08 2.57
743 744 1.676678 TAGGCATGGACCACGAGCTC 61.677 60.000 2.73 2.73 0.00 4.09
745 746 1.227380 CTAGGCATGGACCACGAGC 60.227 63.158 0.00 1.01 0.00 5.03
750 751 4.524802 ATTGAATTCTAGGCATGGACCA 57.475 40.909 7.05 0.00 0.00 4.02
754 755 4.763793 CCTGGTATTGAATTCTAGGCATGG 59.236 45.833 7.05 0.00 0.00 3.66
760 761 3.817647 GCTGCCCTGGTATTGAATTCTAG 59.182 47.826 7.05 0.00 0.00 2.43
763 764 1.683385 GGCTGCCCTGGTATTGAATTC 59.317 52.381 7.66 0.00 0.00 2.17
764 765 1.006998 TGGCTGCCCTGGTATTGAATT 59.993 47.619 17.53 0.00 0.00 2.17
769 770 0.409484 AACTTGGCTGCCCTGGTATT 59.591 50.000 17.53 0.00 0.00 1.89
780 781 6.095860 AGGAAAAACGTTAAACTAACTTGGCT 59.904 34.615 0.00 0.00 36.54 4.75
782 783 8.588789 CAAAGGAAAAACGTTAAACTAACTTGG 58.411 33.333 0.00 0.00 36.54 3.61
796 797 5.357032 AGAGGCCATATACAAAGGAAAAACG 59.643 40.000 5.01 0.00 0.00 3.60
810 811 7.988937 TGATTGGTATTTCTAAGAGGCCATAT 58.011 34.615 5.01 0.00 0.00 1.78
818 819 9.565090 CCAGATCAATGATTGGTATTTCTAAGA 57.435 33.333 5.20 0.00 0.00 2.10
823 824 7.088905 GCATCCAGATCAATGATTGGTATTTC 58.911 38.462 17.59 0.00 32.51 2.17
834 835 2.141517 GTCGAGGCATCCAGATCAATG 58.858 52.381 0.00 0.00 0.00 2.82
835 836 1.071385 GGTCGAGGCATCCAGATCAAT 59.929 52.381 0.00 0.00 0.00 2.57
837 838 0.397675 AGGTCGAGGCATCCAGATCA 60.398 55.000 0.00 0.00 0.00 2.92
838 839 0.033228 CAGGTCGAGGCATCCAGATC 59.967 60.000 0.00 0.00 0.00 2.75
846 855 3.512329 TGACTTATAAACAGGTCGAGGCA 59.488 43.478 0.00 0.00 0.00 4.75
848 857 6.700520 GGTTATGACTTATAAACAGGTCGAGG 59.299 42.308 0.00 0.00 38.56 4.63
849 858 7.262772 TGGTTATGACTTATAAACAGGTCGAG 58.737 38.462 0.00 0.00 42.53 4.04
850 859 7.172868 TGGTTATGACTTATAAACAGGTCGA 57.827 36.000 0.00 0.00 42.53 4.20
852 861 7.335924 TGCTTGGTTATGACTTATAAACAGGTC 59.664 37.037 8.10 0.00 46.58 3.85
855 864 9.722056 GATTGCTTGGTTATGACTTATAAACAG 57.278 33.333 0.00 0.00 46.58 3.16
857 866 9.503427 GTGATTGCTTGGTTATGACTTATAAAC 57.497 33.333 0.00 0.00 39.05 2.01
859 868 7.831690 TGGTGATTGCTTGGTTATGACTTATAA 59.168 33.333 0.00 0.00 0.00 0.98
860 869 7.342581 TGGTGATTGCTTGGTTATGACTTATA 58.657 34.615 0.00 0.00 0.00 0.98
862 871 5.565509 TGGTGATTGCTTGGTTATGACTTA 58.434 37.500 0.00 0.00 0.00 2.24
863 872 4.406456 TGGTGATTGCTTGGTTATGACTT 58.594 39.130 0.00 0.00 0.00 3.01
864 873 4.032960 TGGTGATTGCTTGGTTATGACT 57.967 40.909 0.00 0.00 0.00 3.41
865 874 4.485163 GTTGGTGATTGCTTGGTTATGAC 58.515 43.478 0.00 0.00 0.00 3.06
866 875 3.509575 GGTTGGTGATTGCTTGGTTATGA 59.490 43.478 0.00 0.00 0.00 2.15
868 877 2.831526 GGGTTGGTGATTGCTTGGTTAT 59.168 45.455 0.00 0.00 0.00 1.89
869 878 2.243810 GGGTTGGTGATTGCTTGGTTA 58.756 47.619 0.00 0.00 0.00 2.85
870 879 1.047801 GGGTTGGTGATTGCTTGGTT 58.952 50.000 0.00 0.00 0.00 3.67
871 880 0.831711 GGGGTTGGTGATTGCTTGGT 60.832 55.000 0.00 0.00 0.00 3.67
872 881 0.831288 TGGGGTTGGTGATTGCTTGG 60.831 55.000 0.00 0.00 0.00 3.61
873 882 1.047002 TTGGGGTTGGTGATTGCTTG 58.953 50.000 0.00 0.00 0.00 4.01
874 883 1.047801 GTTGGGGTTGGTGATTGCTT 58.952 50.000 0.00 0.00 0.00 3.91
875 884 0.188342 AGTTGGGGTTGGTGATTGCT 59.812 50.000 0.00 0.00 0.00 3.91
876 885 1.047801 AAGTTGGGGTTGGTGATTGC 58.952 50.000 0.00 0.00 0.00 3.56
877 886 2.231235 GCTAAGTTGGGGTTGGTGATTG 59.769 50.000 0.00 0.00 0.00 2.67
878 887 2.110011 AGCTAAGTTGGGGTTGGTGATT 59.890 45.455 0.00 0.00 0.00 2.57
879 888 1.710809 AGCTAAGTTGGGGTTGGTGAT 59.289 47.619 0.00 0.00 0.00 3.06
880 889 1.073284 GAGCTAAGTTGGGGTTGGTGA 59.927 52.381 0.00 0.00 0.00 4.02
917 926 1.653114 CTCTCGCTTTGAGCTTCTTCG 59.347 52.381 0.00 0.00 44.86 3.79
954 1079 0.257616 CTCTCTCCTCCTTCCTCCGT 59.742 60.000 0.00 0.00 0.00 4.69
1087 1220 4.003788 CGTGGCGAGGAGGGTGTT 62.004 66.667 0.00 0.00 0.00 3.32
1218 1872 1.266178 TCTCAAGGAATGGCACGAGA 58.734 50.000 0.00 0.00 0.00 4.04
1410 2283 0.173935 CCGTGTGTACCTTGCCGATA 59.826 55.000 0.00 0.00 0.00 2.92
1665 6817 0.599991 CGAAGCTACACAGGTGCACA 60.600 55.000 20.43 0.00 31.35 4.57
1780 6932 1.303317 GGTTTGCCCAGTCACCGAT 60.303 57.895 0.00 0.00 0.00 4.18
1893 7047 2.523015 GCACAAGCATGCACATAGTTC 58.477 47.619 21.98 1.35 45.39 3.01
1939 7093 7.768240 ACATCACGTACATAGTCTTTCACATA 58.232 34.615 0.00 0.00 0.00 2.29
1996 7151 3.375299 GCTCGTATCTCAAAAGGCAACAT 59.625 43.478 0.00 0.00 41.41 2.71
2026 7181 1.001487 CTCGCATCACCTTTTGCACAA 60.001 47.619 0.00 0.00 38.80 3.33
2029 7184 1.001487 CAACTCGCATCACCTTTTGCA 60.001 47.619 0.00 0.00 38.80 4.08
2053 7504 1.819632 CGGTCCCCATAGCAGTTGC 60.820 63.158 0.00 0.00 42.49 4.17
2059 7510 0.179065 GGTGTTACGGTCCCCATAGC 60.179 60.000 0.00 0.00 0.00 2.97
2063 7514 0.545787 ATGAGGTGTTACGGTCCCCA 60.546 55.000 0.00 0.00 0.00 4.96
2102 7554 1.135402 GTTTATTGGTTGAGCTGGGCG 60.135 52.381 0.00 0.00 0.00 6.13
2109 7561 7.201444 CGCTCTTGTAGTAGTTTATTGGTTGAG 60.201 40.741 0.00 0.00 0.00 3.02
2118 7570 4.240096 GCAACCGCTCTTGTAGTAGTTTA 58.760 43.478 0.00 0.00 34.30 2.01
2133 7585 1.889573 GGGATCTGCTAGCAACCGC 60.890 63.158 19.86 14.16 38.99 5.68
2134 7586 1.040646 TAGGGATCTGCTAGCAACCG 58.959 55.000 19.86 7.53 0.00 4.44
2135 7587 3.560636 TTTAGGGATCTGCTAGCAACC 57.439 47.619 19.86 20.09 0.00 3.77
2136 7588 7.568199 TTAATTTTAGGGATCTGCTAGCAAC 57.432 36.000 19.86 12.59 0.00 4.17
2137 7589 8.588290 TTTTAATTTTAGGGATCTGCTAGCAA 57.412 30.769 19.86 10.28 0.00 3.91
2138 7590 8.766994 ATTTTAATTTTAGGGATCTGCTAGCA 57.233 30.769 18.22 18.22 0.00 3.49
2192 7644 5.584551 AACTAGGAGACTGTGGGATTTTT 57.415 39.130 0.00 0.00 43.88 1.94
2195 7647 5.785940 ACTAAAACTAGGAGACTGTGGGATT 59.214 40.000 0.00 0.00 43.88 3.01
2196 7648 5.342866 ACTAAAACTAGGAGACTGTGGGAT 58.657 41.667 0.00 0.00 43.88 3.85
2201 7653 6.376018 CAGCTAGACTAAAACTAGGAGACTGT 59.624 42.308 0.00 0.00 43.88 3.55
2204 7656 6.762702 ACAGCTAGACTAAAACTAGGAGAC 57.237 41.667 0.00 0.00 38.11 3.36
2206 7658 6.238814 GCCTACAGCTAGACTAAAACTAGGAG 60.239 46.154 0.00 0.00 38.11 3.69
2208 7660 5.505985 CGCCTACAGCTAGACTAAAACTAGG 60.506 48.000 0.00 0.00 40.39 3.02
2209 7661 5.066246 ACGCCTACAGCTAGACTAAAACTAG 59.934 44.000 0.00 0.00 40.39 2.57
2210 7662 4.946157 ACGCCTACAGCTAGACTAAAACTA 59.054 41.667 0.00 0.00 40.39 2.24
2225 7677 4.067972 ACTTTTCTTGAGAACGCCTACA 57.932 40.909 0.00 0.00 33.13 2.74
2227 7679 4.062991 GGAACTTTTCTTGAGAACGCCTA 58.937 43.478 0.00 0.00 33.13 3.93
2228 7680 2.879026 GGAACTTTTCTTGAGAACGCCT 59.121 45.455 0.00 0.00 33.13 5.52
2232 7684 3.548214 GGTGCGGAACTTTTCTTGAGAAC 60.548 47.826 0.00 0.00 33.13 3.01
2246 7698 2.683933 GAGAGGGAGGGTGCGGAA 60.684 66.667 0.00 0.00 0.00 4.30
2247 7699 3.965026 CTGAGAGGGAGGGTGCGGA 62.965 68.421 0.00 0.00 0.00 5.54
2248 7700 3.465403 CTGAGAGGGAGGGTGCGG 61.465 72.222 0.00 0.00 0.00 5.69
2249 7701 4.154347 GCTGAGAGGGAGGGTGCG 62.154 72.222 0.00 0.00 0.00 5.34
2271 7723 2.335712 CGAGGTTGGGCAGGAAAGC 61.336 63.158 0.00 0.00 0.00 3.51
2278 7730 4.680237 CAGCGTCGAGGTTGGGCA 62.680 66.667 13.39 0.00 0.00 5.36
2301 7753 2.434884 ATCAGTGTCGCGGCAAGG 60.435 61.111 18.26 11.28 0.00 3.61
2304 7756 3.964221 GACGATCAGTGTCGCGGCA 62.964 63.158 10.57 10.57 45.12 5.69
2305 7757 3.248171 GACGATCAGTGTCGCGGC 61.248 66.667 2.29 2.29 45.12 6.53
2306 7758 2.579787 GGACGATCAGTGTCGCGG 60.580 66.667 6.13 0.00 45.12 6.46
2315 7767 2.928988 ATCAGGCCCGAGGACGATCA 62.929 60.000 0.00 0.00 42.66 2.92
2317 7769 2.123251 ATCAGGCCCGAGGACGAT 60.123 61.111 0.00 0.00 42.66 3.73
2318 7770 3.147595 CATCAGGCCCGAGGACGA 61.148 66.667 0.00 0.00 42.66 4.20
2319 7771 3.147595 TCATCAGGCCCGAGGACG 61.148 66.667 0.00 0.00 34.63 4.79
2320 7772 2.501610 GTCATCAGGCCCGAGGAC 59.498 66.667 17.32 17.32 39.26 3.85
2321 7773 2.764128 GGTCATCAGGCCCGAGGA 60.764 66.667 0.00 0.00 0.00 3.71
2322 7774 3.083349 TGGTCATCAGGCCCGAGG 61.083 66.667 0.00 0.00 0.00 4.63
2329 7781 0.107508 ATGTTCCGCTGGTCATCAGG 60.108 55.000 0.00 0.00 43.54 3.86
2331 7783 3.055458 TCTTTATGTTCCGCTGGTCATCA 60.055 43.478 9.50 0.00 0.00 3.07
2333 7785 3.270877 GTCTTTATGTTCCGCTGGTCAT 58.729 45.455 10.41 10.41 0.00 3.06
2339 7791 2.354805 GGGAGTGTCTTTATGTTCCGCT 60.355 50.000 0.00 0.00 0.00 5.52
2346 7798 2.356135 CAACGGGGGAGTGTCTTTATG 58.644 52.381 0.00 0.00 0.00 1.90
2347 7799 1.339727 GCAACGGGGGAGTGTCTTTAT 60.340 52.381 0.00 0.00 0.00 1.40
2348 7800 0.035739 GCAACGGGGGAGTGTCTTTA 59.964 55.000 0.00 0.00 0.00 1.85
2351 7803 2.847234 TGCAACGGGGGAGTGTCT 60.847 61.111 0.00 0.00 0.00 3.41
2353 7805 4.265056 GGTGCAACGGGGGAGTGT 62.265 66.667 0.00 0.00 38.12 3.55
2393 7845 1.334243 CTTCGTCGGTGATAGGTCTCC 59.666 57.143 0.00 0.00 35.20 3.71
2400 7852 3.930229 CACCAAATTCTTCGTCGGTGATA 59.070 43.478 0.00 0.00 45.41 2.15
2402 7854 2.139917 CACCAAATTCTTCGTCGGTGA 58.860 47.619 0.00 0.00 45.41 4.02
2404 7856 0.872388 GCACCAAATTCTTCGTCGGT 59.128 50.000 0.00 0.00 0.00 4.69
2406 7858 0.871722 TGGCACCAAATTCTTCGTCG 59.128 50.000 0.00 0.00 0.00 5.12
2409 7861 2.223688 TGTTGTGGCACCAAATTCTTCG 60.224 45.455 16.26 0.00 0.00 3.79
2421 7873 0.816018 ATCGTTTCGGTGTTGTGGCA 60.816 50.000 0.00 0.00 0.00 4.92
2425 7877 1.942677 TGTCATCGTTTCGGTGTTGT 58.057 45.000 2.49 0.00 39.21 3.32
2432 7884 2.139917 TCCCTTGTTGTCATCGTTTCG 58.860 47.619 0.00 0.00 0.00 3.46
2438 7890 6.817765 TGAAGTTTATCCCTTGTTGTCATC 57.182 37.500 0.00 0.00 0.00 2.92
2440 7892 5.411361 CGATGAAGTTTATCCCTTGTTGTCA 59.589 40.000 2.29 0.00 0.00 3.58
2441 7893 5.642063 TCGATGAAGTTTATCCCTTGTTGTC 59.358 40.000 2.29 0.00 0.00 3.18
2444 7896 5.556915 TGTCGATGAAGTTTATCCCTTGTT 58.443 37.500 2.29 0.00 0.00 2.83
2453 7905 5.051816 ACGAACCTTTGTCGATGAAGTTTA 58.948 37.500 0.18 0.00 0.00 2.01
2469 7921 4.174009 CAATAGTCATCAACGACGAACCT 58.826 43.478 0.00 0.00 40.98 3.50
2493 7945 1.750193 AGGTTGTGGTTGTGTGAGTG 58.250 50.000 0.00 0.00 0.00 3.51
2498 7950 3.649023 TGATAGGTAGGTTGTGGTTGTGT 59.351 43.478 0.00 0.00 0.00 3.72
2500 7952 3.008704 GGTGATAGGTAGGTTGTGGTTGT 59.991 47.826 0.00 0.00 0.00 3.32
2502 7954 2.574824 GGGTGATAGGTAGGTTGTGGTT 59.425 50.000 0.00 0.00 0.00 3.67
2513 7965 1.757699 GCTCGAGAAAGGGTGATAGGT 59.242 52.381 18.75 0.00 0.00 3.08
2519 7971 2.125512 CCGGCTCGAGAAAGGGTG 60.126 66.667 18.75 0.00 0.00 4.61
2520 7972 4.083862 GCCGGCTCGAGAAAGGGT 62.084 66.667 22.15 0.00 0.00 4.34
2528 7980 2.357034 GTTTGTCAGCCGGCTCGA 60.357 61.111 30.29 24.13 0.00 4.04
2529 7981 3.777925 CGTTTGTCAGCCGGCTCG 61.778 66.667 30.29 22.58 0.00 5.03
2530 7982 3.423154 CCGTTTGTCAGCCGGCTC 61.423 66.667 30.29 18.08 34.62 4.70
2535 7987 2.051345 CGTTGCCGTTTGTCAGCC 60.051 61.111 0.00 0.00 0.00 4.85
2545 7997 3.186047 CCTTAGCCGACGTTGCCG 61.186 66.667 7.32 0.00 40.83 5.69
2546 7998 3.497031 GCCTTAGCCGACGTTGCC 61.497 66.667 7.32 0.00 0.00 4.52
2547 7999 3.849953 CGCCTTAGCCGACGTTGC 61.850 66.667 0.00 0.00 34.57 4.17
2548 8000 1.683790 CTTCGCCTTAGCCGACGTTG 61.684 60.000 0.00 0.00 34.57 4.10
2549 8001 1.445582 CTTCGCCTTAGCCGACGTT 60.446 57.895 0.00 0.00 34.57 3.99
2550 8002 2.181021 CTTCGCCTTAGCCGACGT 59.819 61.111 0.00 0.00 34.57 4.34
2551 8003 2.582498 CCTTCGCCTTAGCCGACG 60.582 66.667 0.00 0.00 34.57 5.12
2552 8004 1.518792 GTCCTTCGCCTTAGCCGAC 60.519 63.158 0.00 0.00 34.57 4.79
2553 8005 1.537814 TTGTCCTTCGCCTTAGCCGA 61.538 55.000 0.00 0.00 34.57 5.54
2554 8006 0.672401 TTTGTCCTTCGCCTTAGCCG 60.672 55.000 0.00 0.00 34.57 5.52
2555 8007 1.199327 GTTTTGTCCTTCGCCTTAGCC 59.801 52.381 0.00 0.00 34.57 3.93
2556 8008 1.136057 CGTTTTGTCCTTCGCCTTAGC 60.136 52.381 0.00 0.00 0.00 3.09
2557 8009 2.157085 GTCGTTTTGTCCTTCGCCTTAG 59.843 50.000 0.00 0.00 0.00 2.18
2558 8010 2.137523 GTCGTTTTGTCCTTCGCCTTA 58.862 47.619 0.00 0.00 0.00 2.69
2559 8011 0.942252 GTCGTTTTGTCCTTCGCCTT 59.058 50.000 0.00 0.00 0.00 4.35
2560 8012 0.179067 TGTCGTTTTGTCCTTCGCCT 60.179 50.000 0.00 0.00 0.00 5.52
2561 8013 0.234884 CTGTCGTTTTGTCCTTCGCC 59.765 55.000 0.00 0.00 0.00 5.54
2562 8014 0.234884 CCTGTCGTTTTGTCCTTCGC 59.765 55.000 0.00 0.00 0.00 4.70
2563 8015 0.865769 CCCTGTCGTTTTGTCCTTCG 59.134 55.000 0.00 0.00 0.00 3.79
2564 8016 1.235724 CCCCTGTCGTTTTGTCCTTC 58.764 55.000 0.00 0.00 0.00 3.46
2565 8017 0.549469 ACCCCTGTCGTTTTGTCCTT 59.451 50.000 0.00 0.00 0.00 3.36
2567 8019 1.170290 CCACCCCTGTCGTTTTGTCC 61.170 60.000 0.00 0.00 0.00 4.02
2568 8020 0.464916 ACCACCCCTGTCGTTTTGTC 60.465 55.000 0.00 0.00 0.00 3.18
2570 8022 0.464735 TCACCACCCCTGTCGTTTTG 60.465 55.000 0.00 0.00 0.00 2.44
2571 8023 0.256464 TTCACCACCCCTGTCGTTTT 59.744 50.000 0.00 0.00 0.00 2.43
2572 8024 0.179029 CTTCACCACCCCTGTCGTTT 60.179 55.000 0.00 0.00 0.00 3.60
2573 8025 1.052124 TCTTCACCACCCCTGTCGTT 61.052 55.000 0.00 0.00 0.00 3.85
2582 8034 4.008074 TGTCTCATTCTTCTTCACCACC 57.992 45.455 0.00 0.00 0.00 4.61
2584 8036 5.702670 GTCATTGTCTCATTCTTCTTCACCA 59.297 40.000 0.00 0.00 0.00 4.17
2587 8039 6.119240 AGGTCATTGTCTCATTCTTCTTCA 57.881 37.500 0.00 0.00 0.00 3.02
2597 8049 1.275291 GTCGGGAAGGTCATTGTCTCA 59.725 52.381 0.00 0.00 0.00 3.27
2603 8055 0.391263 GAAGCGTCGGGAAGGTCATT 60.391 55.000 0.00 0.00 0.00 2.57
2605 8057 2.654877 GAAGCGTCGGGAAGGTCA 59.345 61.111 0.00 0.00 0.00 4.02
2614 8066 2.506438 GTCGAAGGGGAAGCGTCG 60.506 66.667 0.00 0.00 34.85 5.12
2615 8067 2.125633 GGTCGAAGGGGAAGCGTC 60.126 66.667 0.00 0.00 0.00 5.19
2617 8069 2.184579 GAGGTCGAAGGGGAAGCG 59.815 66.667 0.00 0.00 0.00 4.68
2618 8070 2.184579 CGAGGTCGAAGGGGAAGC 59.815 66.667 0.00 0.00 43.02 3.86
2619 8071 2.184579 GCGAGGTCGAAGGGGAAG 59.815 66.667 2.94 0.00 43.02 3.46
2620 8072 3.755628 CGCGAGGTCGAAGGGGAA 61.756 66.667 0.00 0.00 43.02 3.97
2635 8087 1.872679 GTAGTAGTCGGCACTGCGC 60.873 63.158 0.00 0.00 40.08 6.09
2637 8089 1.741706 TGTAGTAGTAGTCGGCACTGC 59.258 52.381 0.00 0.00 35.54 4.40
2639 8091 2.005451 CGTGTAGTAGTAGTCGGCACT 58.995 52.381 0.00 0.00 36.55 4.40
2640 8092 1.063174 CCGTGTAGTAGTAGTCGGCAC 59.937 57.143 7.23 0.00 0.00 5.01
2641 8093 1.339055 ACCGTGTAGTAGTAGTCGGCA 60.339 52.381 15.85 0.00 41.33 5.69
2648 8100 2.238144 AGCAGGAGACCGTGTAGTAGTA 59.762 50.000 0.00 0.00 0.00 1.82
2657 8109 3.005539 ATGGCAGCAGGAGACCGT 61.006 61.111 0.00 0.00 0.00 4.83
2659 8111 2.827642 GCATGGCAGCAGGAGACC 60.828 66.667 0.00 0.00 0.00 3.85
2660 8112 2.827642 GGCATGGCAGCAGGAGAC 60.828 66.667 15.47 0.00 35.83 3.36
2661 8113 3.332385 TGGCATGGCAGCAGGAGA 61.332 61.111 19.43 0.00 35.83 3.71
2674 8126 1.456705 GGTGAAAAGGGTGGTGGCA 60.457 57.895 0.00 0.00 0.00 4.92
2698 8150 0.918983 ATCCAAGCCATCCTCGGAAA 59.081 50.000 0.00 0.00 0.00 3.13
2699 8151 0.469917 GATCCAAGCCATCCTCGGAA 59.530 55.000 0.00 0.00 0.00 4.30
2703 8155 1.072159 CCGGATCCAAGCCATCCTC 59.928 63.158 13.41 0.00 38.18 3.71
2710 8162 1.227002 GTCTCGTCCGGATCCAAGC 60.227 63.158 7.81 0.00 0.00 4.01
2718 8170 4.477975 GCTCGTGGTCTCGTCCGG 62.478 72.222 0.00 0.00 0.00 5.14
2722 8174 3.432588 CCTCGCTCGTGGTCTCGT 61.433 66.667 2.53 0.00 0.00 4.18
2733 8185 0.250901 ACAAGAACATTGGCCTCGCT 60.251 50.000 3.32 0.00 0.00 4.93
2739 8191 3.382546 AGCATATCCACAAGAACATTGGC 59.617 43.478 0.00 0.00 0.00 4.52
2741 8193 4.571984 TCGAGCATATCCACAAGAACATTG 59.428 41.667 0.00 0.00 0.00 2.82
2742 8194 4.769688 TCGAGCATATCCACAAGAACATT 58.230 39.130 0.00 0.00 0.00 2.71
2743 8195 4.100035 TCTCGAGCATATCCACAAGAACAT 59.900 41.667 7.81 0.00 0.00 2.71
2744 8196 3.447229 TCTCGAGCATATCCACAAGAACA 59.553 43.478 7.81 0.00 0.00 3.18
2747 8199 3.291584 ACTCTCGAGCATATCCACAAGA 58.708 45.455 7.81 0.00 0.00 3.02
2750 8202 5.791336 AAATACTCTCGAGCATATCCACA 57.209 39.130 7.81 0.00 0.00 4.17
2775 8236 8.478877 TCTAAAGTAATTGCAAACCAAAAAGGA 58.521 29.630 1.71 0.00 41.22 3.36
2794 8255 7.108194 TCAAATCATGCATCACTCTCTAAAGT 58.892 34.615 0.00 0.00 0.00 2.66
2824 8285 6.183360 ACAAAAGCAAAGAGAACCTAGCAATT 60.183 34.615 0.00 0.00 0.00 2.32
2842 8305 4.676924 GTGTCAATTGCTCACTACAAAAGC 59.323 41.667 19.15 0.00 36.56 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.