Multiple sequence alignment - TraesCS3D01G423600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G423600 chr3D 100.000 3591 0 0 1 3591 536026430 536030020 0.000000e+00 6632.0
1 TraesCS3D01G423600 chr3D 78.590 383 70 9 1338 1716 536338198 536337824 3.580000e-60 243.0
2 TraesCS3D01G423600 chr3B 87.124 2858 171 77 198 2945 708368770 708366000 0.000000e+00 3057.0
3 TraesCS3D01G423600 chr3B 78.426 394 72 11 1338 1727 708497501 708497885 9.960000e-61 244.0
4 TraesCS3D01G423600 chr3B 78.329 383 71 10 1338 1716 708503495 708503869 1.670000e-58 237.0
5 TraesCS3D01G423600 chr3B 78.238 386 70 12 1336 1716 708911489 708911113 5.990000e-58 235.0
6 TraesCS3D01G423600 chr3B 92.632 95 7 0 104 198 40237971 40237877 1.740000e-28 137.0
7 TraesCS3D01G423600 chr3B 86.420 81 4 3 21 99 708383442 708383367 8.260000e-12 82.4
8 TraesCS3D01G423600 chr3B 92.857 56 2 2 46 99 708368844 708368789 2.970000e-11 80.5
9 TraesCS3D01G423600 chr3A 90.252 1231 96 9 1887 3104 671696315 671695096 0.000000e+00 1587.0
10 TraesCS3D01G423600 chr3A 87.473 1365 76 50 554 1864 671698710 671697387 0.000000e+00 1485.0
11 TraesCS3D01G423600 chr3A 88.100 479 53 2 3115 3590 671693367 671692890 1.870000e-157 566.0
12 TraesCS3D01G423600 chr3A 77.778 396 78 9 1334 1727 671765582 671765195 5.990000e-58 235.0
13 TraesCS3D01G423600 chr3A 93.243 148 10 0 389 536 671698967 671698820 6.040000e-53 219.0
14 TraesCS3D01G423600 chr4A 81.851 562 44 17 303 835 644053752 644054284 1.540000e-113 420.0
15 TraesCS3D01G423600 chr4A 81.851 562 44 17 303 835 644121392 644121924 1.540000e-113 420.0
16 TraesCS3D01G423600 chr4A 81.851 562 44 17 303 835 644150410 644150942 1.540000e-113 420.0
17 TraesCS3D01G423600 chr4A 75.749 334 63 13 1392 1719 621291581 621291260 6.210000e-33 152.0
18 TraesCS3D01G423600 chr5D 75.595 336 60 17 1392 1719 549771964 549771643 2.890000e-31 147.0
19 TraesCS3D01G423600 chr5D 90.909 99 9 0 112 210 37920392 37920294 2.250000e-27 134.0
20 TraesCS3D01G423600 chr1D 95.556 90 3 1 112 201 247300171 247300083 3.740000e-30 143.0
21 TraesCS3D01G423600 chr5B 75.148 338 58 20 1392 1719 701276657 701276336 6.250000e-28 135.0
22 TraesCS3D01G423600 chr5B 93.333 90 5 1 112 200 661126558 661126647 8.090000e-27 132.0
23 TraesCS3D01G423600 chr1B 93.407 91 5 1 112 201 457465617 457465707 2.250000e-27 134.0
24 TraesCS3D01G423600 chr1B 94.118 85 5 0 112 196 296490619 296490703 2.910000e-26 130.0
25 TraesCS3D01G423600 chr1A 93.258 89 6 0 108 196 286008396 286008308 8.090000e-27 132.0
26 TraesCS3D01G423600 chr2A 94.118 85 5 0 112 196 607842618 607842534 2.910000e-26 130.0
27 TraesCS3D01G423600 chr6A 90.526 95 9 0 104 198 450088974 450089068 3.760000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G423600 chr3D 536026430 536030020 3590 False 6632.00 6632 100.0000 1 3591 1 chr3D.!!$F1 3590
1 TraesCS3D01G423600 chr3B 708366000 708368844 2844 True 1568.75 3057 89.9905 46 2945 2 chr3B.!!$R4 2899
2 TraesCS3D01G423600 chr3A 671692890 671698967 6077 True 964.25 1587 89.7670 389 3590 4 chr3A.!!$R2 3201
3 TraesCS3D01G423600 chr4A 644053752 644054284 532 False 420.00 420 81.8510 303 835 1 chr4A.!!$F1 532
4 TraesCS3D01G423600 chr4A 644121392 644121924 532 False 420.00 420 81.8510 303 835 1 chr4A.!!$F2 532
5 TraesCS3D01G423600 chr4A 644150410 644150942 532 False 420.00 420 81.8510 303 835 1 chr4A.!!$F3 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
270 280 0.546122 AATTGCAGGCCCGTCTCATA 59.454 50.0 0.00 0.00 0.00 2.15 F
1649 1842 0.041386 AGGACTACCTGGACCTGGTC 59.959 60.0 25.12 18.65 45.92 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1673 1866 0.178975 ATCCGAGCTCGAGGATCCTT 60.179 55.0 36.59 8.89 43.27 3.36 R
3031 4325 0.041576 GCAAAGAACACGGTCGTTCC 60.042 55.0 15.18 0.00 45.27 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.919313 CATTATTGCACGCAATTTTCTATCT 57.081 32.000 21.32 0.00 43.32 1.98
32 33 7.989609 CATTATTGCACGCAATTTTCTATCTC 58.010 34.615 21.32 0.00 43.32 2.75
33 34 5.824904 ATTGCACGCAATTTTCTATCTCT 57.175 34.783 11.41 0.00 43.32 3.10
34 35 4.604843 TGCACGCAATTTTCTATCTCTG 57.395 40.909 0.00 0.00 0.00 3.35
35 36 4.252878 TGCACGCAATTTTCTATCTCTGA 58.747 39.130 0.00 0.00 0.00 3.27
36 37 4.694982 TGCACGCAATTTTCTATCTCTGAA 59.305 37.500 0.00 0.00 0.00 3.02
37 38 5.181056 TGCACGCAATTTTCTATCTCTGAAA 59.819 36.000 0.00 0.00 0.00 2.69
38 39 5.509622 GCACGCAATTTTCTATCTCTGAAAC 59.490 40.000 0.00 0.00 33.77 2.78
39 40 5.729883 CACGCAATTTTCTATCTCTGAAACG 59.270 40.000 0.00 0.00 33.77 3.60
40 41 5.163854 ACGCAATTTTCTATCTCTGAAACGG 60.164 40.000 0.00 0.00 33.77 4.44
41 42 5.573146 GCAATTTTCTATCTCTGAAACGGG 58.427 41.667 0.00 0.00 33.77 5.28
42 43 5.354234 GCAATTTTCTATCTCTGAAACGGGA 59.646 40.000 0.00 0.00 33.77 5.14
43 44 6.675728 GCAATTTTCTATCTCTGAAACGGGAC 60.676 42.308 0.00 0.00 33.77 4.46
44 45 5.740290 TTTTCTATCTCTGAAACGGGACT 57.260 39.130 0.00 0.00 33.77 3.85
76 77 5.900123 AGATCCAACTGCCTAATGTACTACT 59.100 40.000 0.00 0.00 0.00 2.57
88 89 8.148999 GCCTAATGTACTACTACCAAGCTTAAT 58.851 37.037 0.00 0.00 0.00 1.40
102 112 5.582665 CCAAGCTTAATTCTCAGTCAGTACC 59.417 44.000 0.00 0.00 0.00 3.34
108 118 5.568620 AATTCTCAGTCAGTACCCAGTTT 57.431 39.130 0.00 0.00 0.00 2.66
109 119 6.681729 AATTCTCAGTCAGTACCCAGTTTA 57.318 37.500 0.00 0.00 0.00 2.01
110 120 5.464030 TTCTCAGTCAGTACCCAGTTTAC 57.536 43.478 0.00 0.00 0.00 2.01
112 122 5.884322 TCTCAGTCAGTACCCAGTTTACTA 58.116 41.667 0.00 0.00 0.00 1.82
113 123 5.709164 TCTCAGTCAGTACCCAGTTTACTAC 59.291 44.000 0.00 0.00 0.00 2.73
130 140 8.999220 GTTTACTACTGCCTCTGTAAACTAAT 57.001 34.615 15.80 0.00 45.11 1.73
138 148 9.203163 ACTGCCTCTGTAAACTAATATAAGAGT 57.797 33.333 0.00 0.00 0.00 3.24
187 197 9.507280 TCTAAACGTTCTTATATTAGTTCACGG 57.493 33.333 0.00 0.00 0.00 4.94
188 198 9.507280 CTAAACGTTCTTATATTAGTTCACGGA 57.493 33.333 0.00 0.00 0.00 4.69
189 199 7.982371 AACGTTCTTATATTAGTTCACGGAG 57.018 36.000 0.00 0.00 0.00 4.63
190 200 6.501781 ACGTTCTTATATTAGTTCACGGAGG 58.498 40.000 12.21 0.00 0.00 4.30
191 201 5.919141 CGTTCTTATATTAGTTCACGGAGGG 59.081 44.000 0.00 0.00 0.00 4.30
192 202 6.238842 CGTTCTTATATTAGTTCACGGAGGGA 60.239 42.308 0.00 0.00 0.00 4.20
193 203 6.896021 TCTTATATTAGTTCACGGAGGGAG 57.104 41.667 0.00 0.00 0.00 4.30
194 204 6.371278 TCTTATATTAGTTCACGGAGGGAGT 58.629 40.000 0.00 0.00 0.00 3.85
195 205 7.520798 TCTTATATTAGTTCACGGAGGGAGTA 58.479 38.462 0.00 0.00 0.00 2.59
196 206 7.446625 TCTTATATTAGTTCACGGAGGGAGTAC 59.553 40.741 0.00 0.00 0.00 2.73
197 207 2.885135 TAGTTCACGGAGGGAGTACA 57.115 50.000 0.00 0.00 0.00 2.90
198 208 2.233305 AGTTCACGGAGGGAGTACAT 57.767 50.000 0.00 0.00 0.00 2.29
199 209 2.537143 AGTTCACGGAGGGAGTACATT 58.463 47.619 0.00 0.00 0.00 2.71
200 210 3.705051 AGTTCACGGAGGGAGTACATTA 58.295 45.455 0.00 0.00 0.00 1.90
201 211 4.287552 AGTTCACGGAGGGAGTACATTAT 58.712 43.478 0.00 0.00 0.00 1.28
202 212 4.715297 AGTTCACGGAGGGAGTACATTATT 59.285 41.667 0.00 0.00 0.00 1.40
203 213 4.665833 TCACGGAGGGAGTACATTATTG 57.334 45.455 0.00 0.00 0.00 1.90
204 214 4.028131 TCACGGAGGGAGTACATTATTGT 58.972 43.478 0.00 0.00 39.98 2.71
207 217 6.154877 TCACGGAGGGAGTACATTATTGTAAA 59.845 38.462 0.00 0.00 39.96 2.01
226 236 8.732746 TTGTAAAAACAGTAGAAGAAGAAGCT 57.267 30.769 0.00 0.00 0.00 3.74
227 237 8.366671 TGTAAAAACAGTAGAAGAAGAAGCTC 57.633 34.615 0.00 0.00 0.00 4.09
228 238 7.985184 TGTAAAAACAGTAGAAGAAGAAGCTCA 59.015 33.333 0.00 0.00 0.00 4.26
245 255 3.461061 GCTCACAGCTGCTTACATATCA 58.539 45.455 15.27 0.00 38.45 2.15
246 256 3.873361 GCTCACAGCTGCTTACATATCAA 59.127 43.478 15.27 0.00 38.45 2.57
247 257 4.514441 GCTCACAGCTGCTTACATATCAAT 59.486 41.667 15.27 0.00 38.45 2.57
248 258 5.698089 GCTCACAGCTGCTTACATATCAATA 59.302 40.000 15.27 0.00 38.45 1.90
249 259 6.370994 GCTCACAGCTGCTTACATATCAATAT 59.629 38.462 15.27 0.00 38.45 1.28
250 260 7.412781 GCTCACAGCTGCTTACATATCAATATC 60.413 40.741 15.27 0.00 38.45 1.63
270 280 0.546122 AATTGCAGGCCCGTCTCATA 59.454 50.000 0.00 0.00 0.00 2.15
285 295 5.149054 GTCTCATACGAAAGAGCCATTTG 57.851 43.478 0.00 0.00 0.00 2.32
296 306 4.286297 AGAGCCATTTGTACTGTGCTTA 57.714 40.909 0.00 0.00 0.00 3.09
323 337 3.678289 AGAATGAACAGCTGCACATGTA 58.322 40.909 21.31 1.41 0.00 2.29
341 355 1.334869 GTAAATGGAGGAATGCGCAGG 59.665 52.381 18.32 0.00 0.00 4.85
344 358 3.512516 GGAGGAATGCGCAGGTGC 61.513 66.667 18.32 12.00 37.78 5.01
352 366 3.790744 TGCGCAGGTGCATAAAAAG 57.209 47.368 5.66 0.00 40.62 2.27
354 368 1.199789 TGCGCAGGTGCATAAAAAGAG 59.800 47.619 5.66 0.00 40.62 2.85
355 369 1.200020 GCGCAGGTGCATAAAAAGAGT 59.800 47.619 0.30 0.00 42.21 3.24
356 370 2.418628 GCGCAGGTGCATAAAAAGAGTA 59.581 45.455 0.30 0.00 42.21 2.59
357 371 3.485877 GCGCAGGTGCATAAAAAGAGTAG 60.486 47.826 0.30 0.00 42.21 2.57
359 373 4.391830 CGCAGGTGCATAAAAAGAGTAGAA 59.608 41.667 2.33 0.00 42.21 2.10
360 374 5.631992 GCAGGTGCATAAAAAGAGTAGAAC 58.368 41.667 0.00 0.00 41.59 3.01
361 375 5.181245 GCAGGTGCATAAAAAGAGTAGAACA 59.819 40.000 0.00 0.00 41.59 3.18
362 376 6.127897 GCAGGTGCATAAAAAGAGTAGAACAT 60.128 38.462 0.00 0.00 41.59 2.71
374 388 6.187727 AGAGTAGAACATTTTCACTCCCAA 57.812 37.500 14.92 0.00 38.90 4.12
378 392 3.259123 AGAACATTTTCACTCCCAATGGC 59.741 43.478 0.00 0.00 33.72 4.40
408 437 1.538512 CACATGGAGCAACAGTTCCAG 59.461 52.381 7.14 2.81 44.35 3.86
490 519 0.683973 AGGTTCCTGACTGAGCAGTG 59.316 55.000 8.03 0.00 42.66 3.66
502 539 1.208052 TGAGCAGTGGATCCAACTAGC 59.792 52.381 18.20 17.31 0.00 3.42
541 582 5.180117 CACATTGGTCATTTCCCTATCGATC 59.820 44.000 0.00 0.00 0.00 3.69
542 583 3.660501 TGGTCATTTCCCTATCGATCG 57.339 47.619 9.36 9.36 0.00 3.69
543 584 3.227614 TGGTCATTTCCCTATCGATCGA 58.772 45.455 21.86 21.86 0.00 3.59
552 681 2.398498 CCTATCGATCGAAGCCAACTG 58.602 52.381 23.50 6.06 0.00 3.16
557 686 1.471501 CGATCGAAGCCAACTGGATCA 60.472 52.381 10.26 0.00 36.88 2.92
584 713 2.808543 AGTTTCTGAATTCTGACGGCAC 59.191 45.455 13.97 9.01 0.00 5.01
602 731 2.605338 GCACACACACACATGGATCAAC 60.605 50.000 0.00 0.00 0.00 3.18
603 732 2.617774 CACACACACACATGGATCAACA 59.382 45.455 0.00 0.00 0.00 3.33
604 733 2.880268 ACACACACACATGGATCAACAG 59.120 45.455 0.00 0.00 0.00 3.16
605 734 2.880268 CACACACACATGGATCAACAGT 59.120 45.455 0.00 0.00 0.00 3.55
606 735 3.058708 CACACACACATGGATCAACAGTC 60.059 47.826 0.00 0.00 0.00 3.51
638 771 3.428198 GCAGAGCTGAAGAATATAGCACG 59.572 47.826 0.85 0.00 39.84 5.34
643 776 4.042398 GCTGAAGAATATAGCACGTTCGA 58.958 43.478 0.00 0.00 37.40 3.71
681 815 0.702902 AGGACGGGGTCTCTGACTTA 59.297 55.000 0.00 0.00 32.47 2.24
777 920 4.035102 GGGCAGTGTCCCAGTCCC 62.035 72.222 15.40 1.35 45.82 4.46
788 931 1.279846 TCCCAGTCCCGGTTTGAATAC 59.720 52.381 0.00 0.00 0.00 1.89
822 965 2.237392 GACCCAGCTAACACCAGATTCT 59.763 50.000 0.00 0.00 0.00 2.40
884 1032 3.846405 TTCCCTCCACGCCACTCCT 62.846 63.158 0.00 0.00 0.00 3.69
904 1065 9.372369 CACTCCTCTTCTCGTTATTTATTTTCT 57.628 33.333 0.00 0.00 0.00 2.52
906 1067 8.943909 TCCTCTTCTCGTTATTTATTTTCTCC 57.056 34.615 0.00 0.00 0.00 3.71
908 1069 7.705325 CCTCTTCTCGTTATTTATTTTCTCCGA 59.295 37.037 0.00 0.00 0.00 4.55
909 1070 8.630278 TCTTCTCGTTATTTATTTTCTCCGAG 57.370 34.615 0.00 0.00 41.25 4.63
910 1071 8.248945 TCTTCTCGTTATTTATTTTCTCCGAGT 58.751 33.333 0.00 0.00 40.84 4.18
930 1091 0.738975 CCTGCCGACGATCAGTTCTA 59.261 55.000 13.40 0.00 0.00 2.10
993 1173 3.702555 GTGGAGACGCACACGCAC 61.703 66.667 0.00 0.00 45.53 5.34
994 1174 4.214327 TGGAGACGCACACGCACA 62.214 61.111 0.00 0.00 45.53 4.57
995 1175 2.738521 GGAGACGCACACGCACAT 60.739 61.111 0.00 0.00 45.53 3.21
998 1179 1.998550 GAGACGCACACGCACATACG 61.999 60.000 0.00 0.00 45.53 3.06
1026 1207 1.034292 GGATCCAGCCCAACTTGCTC 61.034 60.000 6.95 0.00 36.81 4.26
1230 1417 2.592993 CGTTGCCTCTCCCCTGGAA 61.593 63.158 0.00 0.00 0.00 3.53
1260 1448 4.020543 ACAACACTAGCCAGGTTTCAAAA 58.979 39.130 0.00 0.00 0.00 2.44
1276 1464 3.888934 TCAAAACTTGCGATTCTTGCTC 58.111 40.909 0.00 0.00 0.00 4.26
1278 1466 2.977405 AACTTGCGATTCTTGCTCAC 57.023 45.000 0.00 0.00 0.00 3.51
1286 1474 4.625742 TGCGATTCTTGCTCACTTAGTTAC 59.374 41.667 0.00 0.00 0.00 2.50
1287 1475 4.865365 GCGATTCTTGCTCACTTAGTTACT 59.135 41.667 0.00 0.00 0.00 2.24
1288 1476 6.034591 GCGATTCTTGCTCACTTAGTTACTA 58.965 40.000 0.00 0.00 0.00 1.82
1289 1477 6.697892 GCGATTCTTGCTCACTTAGTTACTAT 59.302 38.462 0.00 0.00 0.00 2.12
1290 1478 7.096394 GCGATTCTTGCTCACTTAGTTACTATC 60.096 40.741 0.00 0.00 0.00 2.08
1291 1479 8.132362 CGATTCTTGCTCACTTAGTTACTATCT 58.868 37.037 0.00 0.00 0.00 1.98
1292 1480 9.243637 GATTCTTGCTCACTTAGTTACTATCTG 57.756 37.037 0.00 0.00 0.00 2.90
1293 1481 7.704578 TCTTGCTCACTTAGTTACTATCTGT 57.295 36.000 0.00 0.00 0.00 3.41
1294 1482 8.803397 TCTTGCTCACTTAGTTACTATCTGTA 57.197 34.615 0.00 0.00 0.00 2.74
1295 1483 9.409918 TCTTGCTCACTTAGTTACTATCTGTAT 57.590 33.333 0.00 0.00 0.00 2.29
1325 1518 4.875544 TTAGCGTATCTGAATGTTTGGC 57.124 40.909 0.00 0.00 0.00 4.52
1326 1519 2.017049 AGCGTATCTGAATGTTTGGCC 58.983 47.619 0.00 0.00 0.00 5.36
1454 1647 1.153667 CTCGCTGCTGGACCTCTTC 60.154 63.158 0.00 0.00 0.00 2.87
1577 1770 2.959484 GCACTGCTACCTCCTGCCA 61.959 63.158 0.00 0.00 0.00 4.92
1581 1774 4.162690 GCTACCTCCTGCCACCCG 62.163 72.222 0.00 0.00 0.00 5.28
1649 1842 0.041386 AGGACTACCTGGACCTGGTC 59.959 60.000 25.12 18.65 45.92 4.02
1673 1866 4.269523 AAGGTCCGGCTGCAGCAA 62.270 61.111 37.63 20.94 44.36 3.91
1691 1884 0.395862 AAAGGATCCTCGAGCTCGGA 60.396 55.000 33.98 24.53 40.29 4.55
1766 1980 5.947228 TGCCTAGACAGACAAATCAAAAG 57.053 39.130 0.00 0.00 0.00 2.27
1768 1982 6.061441 TGCCTAGACAGACAAATCAAAAGAA 58.939 36.000 0.00 0.00 0.00 2.52
1769 1983 6.716628 TGCCTAGACAGACAAATCAAAAGAAT 59.283 34.615 0.00 0.00 0.00 2.40
1771 1985 7.533426 CCTAGACAGACAAATCAAAAGAATGG 58.467 38.462 0.00 0.00 0.00 3.16
1772 1986 7.391554 CCTAGACAGACAAATCAAAAGAATGGA 59.608 37.037 0.00 0.00 0.00 3.41
1773 1987 7.771927 AGACAGACAAATCAAAAGAATGGAT 57.228 32.000 0.00 0.00 0.00 3.41
1774 1988 7.600065 AGACAGACAAATCAAAAGAATGGATG 58.400 34.615 0.00 0.00 0.00 3.51
1776 1990 7.729116 ACAGACAAATCAAAAGAATGGATGTT 58.271 30.769 0.00 0.00 0.00 2.71
1778 1992 9.350357 CAGACAAATCAAAAGAATGGATGTTAG 57.650 33.333 0.00 0.00 0.00 2.34
1779 1993 9.082313 AGACAAATCAAAAGAATGGATGTTAGT 57.918 29.630 0.00 0.00 0.00 2.24
1780 1994 9.132521 GACAAATCAAAAGAATGGATGTTAGTG 57.867 33.333 0.00 0.00 0.00 2.74
1787 2001 4.759782 AGAATGGATGTTAGTGAGAACCG 58.240 43.478 0.00 0.00 0.00 4.44
1818 2032 6.286758 TGTGACCACATTTTTGCATAAACAT 58.713 32.000 4.36 0.00 36.21 2.71
1833 2047 2.867109 AACATCCCTCTCACACTTGG 57.133 50.000 0.00 0.00 0.00 3.61
1835 2049 0.325933 CATCCCTCTCACACTTGGCA 59.674 55.000 0.00 0.00 0.00 4.92
1837 2051 1.067295 TCCCTCTCACACTTGGCAAT 58.933 50.000 0.00 0.00 0.00 3.56
1868 2082 8.567285 AACTTGATGCTTGTTATTAGCTTAGT 57.433 30.769 0.00 0.00 39.38 2.24
1869 2083 8.202745 ACTTGATGCTTGTTATTAGCTTAGTC 57.797 34.615 0.00 0.00 39.38 2.59
1870 2084 7.824289 ACTTGATGCTTGTTATTAGCTTAGTCA 59.176 33.333 0.00 0.00 39.38 3.41
1871 2085 8.737168 TTGATGCTTGTTATTAGCTTAGTCAT 57.263 30.769 0.00 0.00 39.38 3.06
1872 2086 8.146479 TGATGCTTGTTATTAGCTTAGTCATG 57.854 34.615 0.00 0.00 39.38 3.07
1873 2087 7.986889 TGATGCTTGTTATTAGCTTAGTCATGA 59.013 33.333 0.00 0.00 39.38 3.07
1874 2088 7.539712 TGCTTGTTATTAGCTTAGTCATGAC 57.460 36.000 18.47 18.47 39.38 3.06
1875 2089 7.102993 TGCTTGTTATTAGCTTAGTCATGACA 58.897 34.615 27.02 10.87 39.38 3.58
1883 3145 7.953158 TTAGCTTAGTCATGACATTAGCATC 57.047 36.000 31.01 14.66 35.30 3.91
1885 3147 6.590068 AGCTTAGTCATGACATTAGCATCTT 58.410 36.000 31.01 17.88 35.30 2.40
1902 3164 6.799512 AGCATCTTGTACCTTTCAAATATGC 58.200 36.000 13.08 13.08 40.51 3.14
1928 3190 6.938596 GGGGTACATATCCTACCAAAATACAC 59.061 42.308 7.97 0.00 36.14 2.90
1929 3191 7.420446 GGGGTACATATCCTACCAAAATACACA 60.420 40.741 7.97 0.00 36.14 3.72
1933 3195 7.940850 ACATATCCTACCAAAATACACAATGC 58.059 34.615 0.00 0.00 0.00 3.56
1951 3215 5.105392 ACAATGCGTGGTGGAATATCAAAAT 60.105 36.000 0.00 0.00 0.00 1.82
1952 3216 5.596836 ATGCGTGGTGGAATATCAAAATT 57.403 34.783 0.00 0.00 0.00 1.82
1953 3217 4.992688 TGCGTGGTGGAATATCAAAATTC 58.007 39.130 0.00 0.00 35.51 2.17
1954 3218 4.035017 GCGTGGTGGAATATCAAAATTCG 58.965 43.478 0.00 0.00 36.84 3.34
1955 3219 4.597079 CGTGGTGGAATATCAAAATTCGG 58.403 43.478 0.00 0.00 36.84 4.30
1956 3220 4.095782 CGTGGTGGAATATCAAAATTCGGT 59.904 41.667 0.00 0.00 36.84 4.69
1957 3221 5.392595 CGTGGTGGAATATCAAAATTCGGTT 60.393 40.000 0.00 0.00 36.84 4.44
1959 3223 5.478679 TGGTGGAATATCAAAATTCGGTTGT 59.521 36.000 0.00 0.00 36.84 3.32
1960 3224 6.659668 TGGTGGAATATCAAAATTCGGTTGTA 59.340 34.615 0.00 0.00 36.84 2.41
1978 3249 8.172484 TCGGTTGTATAAATTTGTGAGAAATCG 58.828 33.333 0.00 0.93 0.00 3.34
1989 3260 6.408858 TTGTGAGAAATCGCTAAGACATTC 57.591 37.500 0.00 0.00 0.00 2.67
1991 3262 5.807520 TGTGAGAAATCGCTAAGACATTCTC 59.192 40.000 13.84 13.84 45.70 2.87
2003 3282 8.591312 CGCTAAGACATTCTCTTCTTTTTAGAG 58.409 37.037 0.00 0.00 40.04 2.43
2067 3361 3.035363 TCTATCCTCCATTAACGCACCA 58.965 45.455 0.00 0.00 0.00 4.17
2088 3382 7.201565 GCACCACTAAAACTTTTGTTGCATTTA 60.202 33.333 7.90 0.00 42.67 1.40
2091 3385 8.825745 CCACTAAAACTTTTGTTGCATTTACAT 58.174 29.630 0.00 0.00 42.67 2.29
2093 3387 9.816354 ACTAAAACTTTTGTTGCATTTACATCT 57.184 25.926 0.00 0.00 42.67 2.90
2098 3392 9.593134 AACTTTTGTTGCATTTACATCTTAACA 57.407 25.926 0.00 0.00 41.77 2.41
2107 3401 8.673711 TGCATTTACATCTTAACAATGTAGGAC 58.326 33.333 0.00 1.49 39.90 3.85
2128 3422 0.035534 TGGACATCATGTGGTTCCGG 60.036 55.000 0.00 0.00 0.00 5.14
2129 3423 0.748005 GGACATCATGTGGTTCCGGG 60.748 60.000 0.00 0.00 0.00 5.73
2191 3485 0.522915 CGTCGGACTTCTACTTCGGC 60.523 60.000 6.57 0.00 0.00 5.54
2359 3653 2.049063 GAGCTGGTCGACAAGCGT 60.049 61.111 33.49 23.63 41.80 5.07
2362 3656 3.414700 CTGGTCGACAAGCGTGGC 61.415 66.667 18.91 0.00 41.80 5.01
2422 3716 1.603455 CTGCAACAACACCCGGGAT 60.603 57.895 32.02 12.66 0.00 3.85
2572 3866 4.717313 GTGCGGTGGAAGGTCCCC 62.717 72.222 0.00 0.00 35.03 4.81
2596 3890 4.597404 GATATGCATCCACTGAGTCTGA 57.403 45.455 0.19 0.00 0.00 3.27
2599 3893 1.274447 TGCATCCACTGAGTCTGAGTG 59.726 52.381 12.13 12.13 40.55 3.51
2605 3899 1.414181 CACTGAGTCTGAGTGGTTGGT 59.586 52.381 11.32 0.00 37.72 3.67
2606 3900 2.119495 ACTGAGTCTGAGTGGTTGGTT 58.881 47.619 3.76 0.00 0.00 3.67
2607 3901 2.103263 ACTGAGTCTGAGTGGTTGGTTC 59.897 50.000 3.76 0.00 0.00 3.62
2608 3902 2.103094 CTGAGTCTGAGTGGTTGGTTCA 59.897 50.000 0.00 0.00 0.00 3.18
2609 3903 2.705658 TGAGTCTGAGTGGTTGGTTCAT 59.294 45.455 0.00 0.00 0.00 2.57
2610 3904 3.070018 GAGTCTGAGTGGTTGGTTCATG 58.930 50.000 0.00 0.00 0.00 3.07
2611 3905 2.154462 GTCTGAGTGGTTGGTTCATGG 58.846 52.381 0.00 0.00 0.00 3.66
2612 3906 0.883833 CTGAGTGGTTGGTTCATGGC 59.116 55.000 0.00 0.00 0.00 4.40
2613 3907 0.184692 TGAGTGGTTGGTTCATGGCA 59.815 50.000 0.00 0.00 0.00 4.92
2614 3908 1.203038 TGAGTGGTTGGTTCATGGCAT 60.203 47.619 0.00 0.00 0.00 4.40
2619 3913 1.269206 GGTTGGTTCATGGCATATGCG 60.269 52.381 21.04 8.11 43.26 4.73
2625 3919 0.594110 TCATGGCATATGCGCATGTG 59.406 50.000 33.91 34.61 43.61 3.21
2630 3924 1.570967 CATATGCGCATGTGGTCGG 59.429 57.895 32.35 12.33 0.00 4.79
2651 3945 3.624861 GGCCATGTCTGTTTGAGATGTAG 59.375 47.826 0.00 0.00 42.78 2.74
2652 3946 4.256920 GCCATGTCTGTTTGAGATGTAGT 58.743 43.478 0.00 0.00 42.78 2.73
2653 3947 5.419542 GCCATGTCTGTTTGAGATGTAGTA 58.580 41.667 0.00 0.00 42.78 1.82
2718 4012 2.793232 GTCGTCAACTCGTAGTTTGCTT 59.207 45.455 0.00 0.00 36.03 3.91
2738 4032 6.530120 TGCTTAGAAGGTTTGAGTGTTCATA 58.470 36.000 0.00 0.00 32.27 2.15
2756 4050 1.408422 TATCGCGTCATGAGAATGCG 58.592 50.000 19.60 19.60 46.30 4.73
2820 4114 5.009436 AGAGTGATAGTATGAGATGCCCT 57.991 43.478 0.00 0.00 0.00 5.19
2861 4155 3.144193 CTTCCTCGCCGAGCTCCT 61.144 66.667 9.01 0.00 0.00 3.69
2895 4189 2.943265 ATGGCTGGACCCTGGCTT 60.943 61.111 17.62 10.49 40.21 4.35
2967 4261 1.529826 GCACAATGAGCCGATTTCGTC 60.530 52.381 0.00 0.00 37.74 4.20
2968 4262 2.002586 CACAATGAGCCGATTTCGTCT 58.997 47.619 0.00 0.00 37.74 4.18
2978 4272 2.860735 CCGATTTCGTCTCTTCATCACC 59.139 50.000 0.00 0.00 37.74 4.02
2994 4288 3.744559 CCGACCTGGTGTTGTTGG 58.255 61.111 2.82 0.00 0.00 3.77
3015 4309 2.224523 GGACATTTATCTCCATGGGCGA 60.225 50.000 13.02 9.52 0.00 5.54
3016 4310 2.808543 GACATTTATCTCCATGGGCGAC 59.191 50.000 13.02 0.00 0.00 5.19
3050 4344 0.041576 GGAACGACCGTGTTCTTTGC 60.042 55.000 10.85 0.00 45.90 3.68
3082 4376 2.045340 GACGACCCACCCCCAATG 60.045 66.667 0.00 0.00 0.00 2.82
3090 4384 0.470456 CCACCCCCAATGCATGCTAT 60.470 55.000 20.33 8.01 0.00 2.97
3104 4398 3.626670 GCATGCTATGATATCTTGCCTCC 59.373 47.826 11.37 0.00 0.00 4.30
3105 4399 4.840271 CATGCTATGATATCTTGCCTCCA 58.160 43.478 3.98 0.00 0.00 3.86
3106 4400 4.277515 TGCTATGATATCTTGCCTCCAC 57.722 45.455 3.98 0.00 0.00 4.02
3107 4401 3.008375 TGCTATGATATCTTGCCTCCACC 59.992 47.826 3.98 0.00 0.00 4.61
3109 4403 0.106708 TGATATCTTGCCTCCACCGC 59.893 55.000 3.98 0.00 0.00 5.68
3111 4405 0.839946 ATATCTTGCCTCCACCGCTT 59.160 50.000 0.00 0.00 0.00 4.68
3112 4406 0.178068 TATCTTGCCTCCACCGCTTC 59.822 55.000 0.00 0.00 0.00 3.86
3113 4407 2.543067 ATCTTGCCTCCACCGCTTCC 62.543 60.000 0.00 0.00 0.00 3.46
3124 6136 1.519455 CCGCTTCCGATCACTGTCC 60.519 63.158 0.00 0.00 36.29 4.02
3137 6149 4.627611 TCACTGTCCGCTAGTTGTATAC 57.372 45.455 0.00 0.00 0.00 1.47
3155 6167 3.694058 CTGCTCCTCCCAAGCGCAT 62.694 63.158 11.47 0.00 42.83 4.73
3156 6168 2.439156 GCTCCTCCCAAGCGCATT 60.439 61.111 11.47 0.00 0.00 3.56
3161 6173 1.097547 CCTCCCAAGCGCATTGTAGG 61.098 60.000 11.47 14.91 37.17 3.18
3185 6197 2.338500 AGATTCCACTTCGAGCGTTTC 58.662 47.619 0.00 0.00 0.00 2.78
3206 6218 0.538287 GGCTTTCAGCAGGTGGTTCT 60.538 55.000 0.00 0.00 44.75 3.01
3229 6241 1.765314 CCACCTGGAACTCTATCCCTG 59.235 57.143 0.00 0.00 38.82 4.45
3230 6242 2.472029 CACCTGGAACTCTATCCCTGT 58.528 52.381 0.00 0.00 38.82 4.00
3231 6243 2.169352 CACCTGGAACTCTATCCCTGTG 59.831 54.545 0.00 0.00 38.82 3.66
3263 6275 3.548587 CATTTTGGCGCATCTATTCTCG 58.451 45.455 10.83 0.00 0.00 4.04
3289 6301 1.269958 AGCTACTGCATGGTGACTCA 58.730 50.000 0.00 0.00 42.74 3.41
3290 6302 1.206610 AGCTACTGCATGGTGACTCAG 59.793 52.381 0.00 0.00 42.74 3.35
3306 6318 0.827925 TCAGGAGTTGGAGTGCTCGT 60.828 55.000 0.00 0.00 32.83 4.18
3312 6324 0.320697 GTTGGAGTGCTCGTACCCTT 59.679 55.000 0.00 0.00 0.00 3.95
3313 6325 0.320374 TTGGAGTGCTCGTACCCTTG 59.680 55.000 0.00 0.00 0.00 3.61
3315 6327 1.542187 GGAGTGCTCGTACCCTTGGT 61.542 60.000 0.00 0.00 40.16 3.67
3342 6354 8.526218 ACATATTCACACAGATATTTCTAGCG 57.474 34.615 0.00 0.00 0.00 4.26
3343 6355 8.144478 ACATATTCACACAGATATTTCTAGCGT 58.856 33.333 0.00 0.00 0.00 5.07
3346 6358 5.102313 TCACACAGATATTTCTAGCGTGTG 58.898 41.667 20.01 20.01 42.81 3.82
3348 6360 5.230936 CACACAGATATTTCTAGCGTGTGAG 59.769 44.000 20.81 7.20 43.37 3.51
3373 6388 0.035881 CTATCGGCTGGACATGGCAT 59.964 55.000 0.00 0.00 0.00 4.40
3507 6522 0.534412 CGACTGCAAGAGGGAGACAT 59.466 55.000 0.00 0.00 38.52 3.06
3522 6537 4.097892 GGGAGACATGAACACTGTGTTTTT 59.902 41.667 25.35 14.06 41.28 1.94
3523 6538 5.036737 GGAGACATGAACACTGTGTTTTTG 58.963 41.667 25.35 24.32 41.28 2.44
3536 6551 7.140705 CACTGTGTTTTTGAAGATTCATGCTA 58.859 34.615 0.00 0.00 37.00 3.49
3541 6556 6.917477 TGTTTTTGAAGATTCATGCTACACAC 59.083 34.615 0.00 0.00 37.00 3.82
3543 6558 3.261580 TGAAGATTCATGCTACACACCG 58.738 45.455 0.00 0.00 31.01 4.94
3556 6571 4.213482 GCTACACACCGAAGACAAAAGAAT 59.787 41.667 0.00 0.00 0.00 2.40
3561 6576 4.273480 ACACCGAAGACAAAAGAATCACAG 59.727 41.667 0.00 0.00 0.00 3.66
3569 6584 4.936891 ACAAAAGAATCACAGCTTCAACC 58.063 39.130 0.00 0.00 0.00 3.77
3571 6586 5.218139 CAAAAGAATCACAGCTTCAACCTC 58.782 41.667 0.00 0.00 0.00 3.85
3572 6587 4.363991 AAGAATCACAGCTTCAACCTCT 57.636 40.909 0.00 0.00 0.00 3.69
3573 6588 5.489792 AAGAATCACAGCTTCAACCTCTA 57.510 39.130 0.00 0.00 0.00 2.43
3590 6605 3.181436 CCTCTAGGTGGGTAATCGGACTA 60.181 52.174 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 7.859377 AGAGATAGAAAATTGCGTGCAATAATG 59.141 33.333 19.43 0.00 44.86 1.90
8 9 7.859377 CAGAGATAGAAAATTGCGTGCAATAAT 59.141 33.333 19.43 11.72 44.86 1.28
9 10 7.065683 TCAGAGATAGAAAATTGCGTGCAATAA 59.934 33.333 19.43 5.06 44.86 1.40
10 11 6.538381 TCAGAGATAGAAAATTGCGTGCAATA 59.462 34.615 19.43 5.09 44.86 1.90
12 13 4.694982 TCAGAGATAGAAAATTGCGTGCAA 59.305 37.500 10.02 10.02 40.47 4.08
13 14 4.252878 TCAGAGATAGAAAATTGCGTGCA 58.747 39.130 0.00 0.00 0.00 4.57
14 15 4.864916 TCAGAGATAGAAAATTGCGTGC 57.135 40.909 0.00 0.00 0.00 5.34
15 16 5.729883 CGTTTCAGAGATAGAAAATTGCGTG 59.270 40.000 0.00 0.00 36.80 5.34
16 17 5.163854 CCGTTTCAGAGATAGAAAATTGCGT 60.164 40.000 0.00 0.00 36.80 5.24
17 18 5.258622 CCGTTTCAGAGATAGAAAATTGCG 58.741 41.667 0.00 0.00 36.80 4.85
18 19 5.354234 TCCCGTTTCAGAGATAGAAAATTGC 59.646 40.000 0.00 0.00 36.80 3.56
19 20 6.595716 AGTCCCGTTTCAGAGATAGAAAATTG 59.404 38.462 0.00 0.00 36.80 2.32
20 21 6.595716 CAGTCCCGTTTCAGAGATAGAAAATT 59.404 38.462 0.00 0.00 36.80 1.82
21 22 6.109359 CAGTCCCGTTTCAGAGATAGAAAAT 58.891 40.000 0.00 0.00 36.80 1.82
22 23 5.479306 CAGTCCCGTTTCAGAGATAGAAAA 58.521 41.667 0.00 0.00 36.80 2.29
23 24 4.081642 CCAGTCCCGTTTCAGAGATAGAAA 60.082 45.833 0.00 0.00 32.93 2.52
24 25 3.447586 CCAGTCCCGTTTCAGAGATAGAA 59.552 47.826 0.00 0.00 0.00 2.10
25 26 3.024547 CCAGTCCCGTTTCAGAGATAGA 58.975 50.000 0.00 0.00 0.00 1.98
26 27 2.101582 CCCAGTCCCGTTTCAGAGATAG 59.898 54.545 0.00 0.00 0.00 2.08
27 28 2.108168 CCCAGTCCCGTTTCAGAGATA 58.892 52.381 0.00 0.00 0.00 1.98
28 29 0.905357 CCCAGTCCCGTTTCAGAGAT 59.095 55.000 0.00 0.00 0.00 2.75
29 30 1.827399 GCCCAGTCCCGTTTCAGAGA 61.827 60.000 0.00 0.00 0.00 3.10
30 31 1.376037 GCCCAGTCCCGTTTCAGAG 60.376 63.158 0.00 0.00 0.00 3.35
31 32 1.701031 TTGCCCAGTCCCGTTTCAGA 61.701 55.000 0.00 0.00 0.00 3.27
32 33 1.228124 TTGCCCAGTCCCGTTTCAG 60.228 57.895 0.00 0.00 0.00 3.02
33 34 1.228124 CTTGCCCAGTCCCGTTTCA 60.228 57.895 0.00 0.00 0.00 2.69
34 35 0.955919 CTCTTGCCCAGTCCCGTTTC 60.956 60.000 0.00 0.00 0.00 2.78
35 36 1.073199 CTCTTGCCCAGTCCCGTTT 59.927 57.895 0.00 0.00 0.00 3.60
36 37 1.201429 ATCTCTTGCCCAGTCCCGTT 61.201 55.000 0.00 0.00 0.00 4.44
37 38 1.613630 ATCTCTTGCCCAGTCCCGT 60.614 57.895 0.00 0.00 0.00 5.28
38 39 1.144936 GATCTCTTGCCCAGTCCCG 59.855 63.158 0.00 0.00 0.00 5.14
39 40 1.274703 TGGATCTCTTGCCCAGTCCC 61.275 60.000 0.00 0.00 0.00 4.46
40 41 0.620556 TTGGATCTCTTGCCCAGTCC 59.379 55.000 0.00 0.00 0.00 3.85
41 42 1.280421 AGTTGGATCTCTTGCCCAGTC 59.720 52.381 0.00 0.00 0.00 3.51
42 43 1.004044 CAGTTGGATCTCTTGCCCAGT 59.996 52.381 0.00 0.00 0.00 4.00
43 44 1.747709 CAGTTGGATCTCTTGCCCAG 58.252 55.000 0.00 0.00 0.00 4.45
44 45 0.322816 GCAGTTGGATCTCTTGCCCA 60.323 55.000 0.00 0.00 0.00 5.36
76 77 6.360370 ACTGACTGAGAATTAAGCTTGGTA 57.640 37.500 9.86 0.00 0.00 3.25
88 89 5.145564 AGTAAACTGGGTACTGACTGAGAA 58.854 41.667 0.00 0.00 30.52 2.87
90 91 5.711036 AGTAGTAAACTGGGTACTGACTGAG 59.289 44.000 0.00 0.00 36.93 3.35
91 92 5.638133 AGTAGTAAACTGGGTACTGACTGA 58.362 41.667 0.00 0.00 36.93 3.41
112 122 9.203163 ACTCTTATATTAGTTTACAGAGGCAGT 57.797 33.333 0.00 0.00 32.21 4.40
161 171 9.507280 CCGTGAACTAATATAAGAACGTTTAGA 57.493 33.333 0.46 0.00 0.00 2.10
162 172 9.507280 TCCGTGAACTAATATAAGAACGTTTAG 57.493 33.333 0.46 0.50 0.00 1.85
163 173 9.507280 CTCCGTGAACTAATATAAGAACGTTTA 57.493 33.333 0.46 0.00 0.00 2.01
164 174 7.490402 CCTCCGTGAACTAATATAAGAACGTTT 59.510 37.037 0.46 0.00 0.00 3.60
165 175 6.976925 CCTCCGTGAACTAATATAAGAACGTT 59.023 38.462 0.00 0.00 0.00 3.99
166 176 6.460676 CCCTCCGTGAACTAATATAAGAACGT 60.461 42.308 0.00 0.00 0.00 3.99
167 177 5.919141 CCCTCCGTGAACTAATATAAGAACG 59.081 44.000 0.00 0.00 0.00 3.95
168 178 7.047460 TCCCTCCGTGAACTAATATAAGAAC 57.953 40.000 0.00 0.00 0.00 3.01
169 179 6.837568 ACTCCCTCCGTGAACTAATATAAGAA 59.162 38.462 0.00 0.00 0.00 2.52
170 180 6.371278 ACTCCCTCCGTGAACTAATATAAGA 58.629 40.000 0.00 0.00 0.00 2.10
171 181 6.651975 ACTCCCTCCGTGAACTAATATAAG 57.348 41.667 0.00 0.00 0.00 1.73
172 182 7.062322 TGTACTCCCTCCGTGAACTAATATAA 58.938 38.462 0.00 0.00 0.00 0.98
173 183 6.604171 TGTACTCCCTCCGTGAACTAATATA 58.396 40.000 0.00 0.00 0.00 0.86
174 184 5.452255 TGTACTCCCTCCGTGAACTAATAT 58.548 41.667 0.00 0.00 0.00 1.28
175 185 4.858850 TGTACTCCCTCCGTGAACTAATA 58.141 43.478 0.00 0.00 0.00 0.98
176 186 3.705051 TGTACTCCCTCCGTGAACTAAT 58.295 45.455 0.00 0.00 0.00 1.73
177 187 3.159213 TGTACTCCCTCCGTGAACTAA 57.841 47.619 0.00 0.00 0.00 2.24
178 188 2.885135 TGTACTCCCTCCGTGAACTA 57.115 50.000 0.00 0.00 0.00 2.24
179 189 2.233305 ATGTACTCCCTCCGTGAACT 57.767 50.000 0.00 0.00 0.00 3.01
180 190 4.667519 ATAATGTACTCCCTCCGTGAAC 57.332 45.455 0.00 0.00 0.00 3.18
181 191 4.468510 ACAATAATGTACTCCCTCCGTGAA 59.531 41.667 0.00 0.00 38.24 3.18
182 192 4.028131 ACAATAATGTACTCCCTCCGTGA 58.972 43.478 0.00 0.00 38.24 4.35
183 193 4.402056 ACAATAATGTACTCCCTCCGTG 57.598 45.455 0.00 0.00 38.24 4.94
184 194 6.549433 TTTACAATAATGTACTCCCTCCGT 57.451 37.500 0.00 0.00 41.64 4.69
185 195 7.334921 TGTTTTTACAATAATGTACTCCCTCCG 59.665 37.037 0.00 0.00 41.64 4.63
186 196 8.570068 TGTTTTTACAATAATGTACTCCCTCC 57.430 34.615 0.00 0.00 41.64 4.30
187 197 9.227777 ACTGTTTTTACAATAATGTACTCCCTC 57.772 33.333 0.00 0.00 41.64 4.30
200 210 9.343539 AGCTTCTTCTTCTACTGTTTTTACAAT 57.656 29.630 0.00 0.00 0.00 2.71
201 211 8.732746 AGCTTCTTCTTCTACTGTTTTTACAA 57.267 30.769 0.00 0.00 0.00 2.41
202 212 7.985184 TGAGCTTCTTCTTCTACTGTTTTTACA 59.015 33.333 0.00 0.00 0.00 2.41
203 213 8.277018 GTGAGCTTCTTCTTCTACTGTTTTTAC 58.723 37.037 0.00 0.00 0.00 2.01
204 214 7.985184 TGTGAGCTTCTTCTTCTACTGTTTTTA 59.015 33.333 0.00 0.00 0.00 1.52
207 217 5.918608 TGTGAGCTTCTTCTTCTACTGTTT 58.081 37.500 0.00 0.00 0.00 2.83
225 235 7.601508 TGATATTGATATGTAAGCAGCTGTGAG 59.398 37.037 16.64 0.00 0.00 3.51
226 236 7.444299 TGATATTGATATGTAAGCAGCTGTGA 58.556 34.615 16.64 0.00 0.00 3.58
227 237 7.662604 TGATATTGATATGTAAGCAGCTGTG 57.337 36.000 16.64 0.00 0.00 3.66
228 238 8.859236 ATTGATATTGATATGTAAGCAGCTGT 57.141 30.769 16.64 0.00 0.00 4.40
244 254 1.682854 ACGGGCCTGCAATTGATATTG 59.317 47.619 12.89 0.00 43.28 1.90
245 255 1.956477 GACGGGCCTGCAATTGATATT 59.044 47.619 12.89 0.00 0.00 1.28
246 256 1.143684 AGACGGGCCTGCAATTGATAT 59.856 47.619 12.89 0.00 0.00 1.63
247 257 0.546122 AGACGGGCCTGCAATTGATA 59.454 50.000 12.89 0.00 0.00 2.15
248 258 0.749454 GAGACGGGCCTGCAATTGAT 60.749 55.000 12.89 0.00 0.00 2.57
249 259 1.377202 GAGACGGGCCTGCAATTGA 60.377 57.895 12.89 0.00 0.00 2.57
250 260 1.033746 ATGAGACGGGCCTGCAATTG 61.034 55.000 12.89 0.00 0.00 2.32
270 280 3.498397 CACAGTACAAATGGCTCTTTCGT 59.502 43.478 0.00 0.00 0.00 3.85
296 306 2.689471 TGCAGCTGTTCATTCTTTGTGT 59.311 40.909 16.64 0.00 0.00 3.72
323 337 0.323725 ACCTGCGCATTCCTCCATTT 60.324 50.000 12.24 0.00 0.00 2.32
341 355 9.677567 TGAAAATGTTCTACTCTTTTTATGCAC 57.322 29.630 0.00 0.00 34.60 4.57
348 362 7.060421 TGGGAGTGAAAATGTTCTACTCTTTT 58.940 34.615 19.18 0.00 39.41 2.27
352 366 6.127897 CCATTGGGAGTGAAAATGTTCTACTC 60.128 42.308 14.83 14.83 39.10 2.59
354 368 5.622233 GCCATTGGGAGTGAAAATGTTCTAC 60.622 44.000 4.53 0.00 35.59 2.59
355 369 4.462483 GCCATTGGGAGTGAAAATGTTCTA 59.538 41.667 4.53 0.00 35.59 2.10
356 370 3.259123 GCCATTGGGAGTGAAAATGTTCT 59.741 43.478 4.53 0.00 35.59 3.01
357 371 3.588955 GCCATTGGGAGTGAAAATGTTC 58.411 45.455 4.53 0.00 35.59 3.18
359 373 1.545582 CGCCATTGGGAGTGAAAATGT 59.454 47.619 4.53 0.00 35.59 2.71
360 374 1.818060 TCGCCATTGGGAGTGAAAATG 59.182 47.619 4.53 0.00 35.19 2.32
361 375 2.094675 CTCGCCATTGGGAGTGAAAAT 58.905 47.619 4.53 0.00 44.30 1.82
362 376 1.533625 CTCGCCATTGGGAGTGAAAA 58.466 50.000 4.53 0.00 44.30 2.29
374 388 0.806868 CATGTGCAGAAACTCGCCAT 59.193 50.000 0.00 0.00 0.00 4.40
378 392 0.445436 GCTCCATGTGCAGAAACTCG 59.555 55.000 0.00 0.00 0.00 4.18
443 472 2.235402 TCTAGTTGGTTTCGATGGGGAC 59.765 50.000 0.00 0.00 0.00 4.46
481 510 2.741228 GCTAGTTGGATCCACTGCTCAG 60.741 54.545 15.91 10.05 0.00 3.35
490 519 1.480954 TCTTCGGTGCTAGTTGGATCC 59.519 52.381 4.20 4.20 0.00 3.36
502 539 3.414700 GTGCGGTGCTCTTCGGTG 61.415 66.667 0.00 0.00 0.00 4.94
541 582 2.417933 CTCTTTGATCCAGTTGGCTTCG 59.582 50.000 0.00 0.00 34.44 3.79
542 583 3.679389 TCTCTTTGATCCAGTTGGCTTC 58.321 45.455 0.00 0.00 34.44 3.86
543 584 3.073650 ACTCTCTTTGATCCAGTTGGCTT 59.926 43.478 0.00 0.00 34.44 4.35
552 681 7.605691 TCAGAATTCAGAAACTCTCTTTGATCC 59.394 37.037 8.44 0.00 29.07 3.36
557 686 5.698545 CCGTCAGAATTCAGAAACTCTCTTT 59.301 40.000 8.44 0.00 29.07 2.52
584 713 2.880268 ACTGTTGATCCATGTGTGTGTG 59.120 45.455 0.00 0.00 0.00 3.82
603 732 1.336632 GCTCTGCTGGATCAGGGACT 61.337 60.000 0.00 0.00 36.69 3.85
604 733 1.145819 GCTCTGCTGGATCAGGGAC 59.854 63.158 0.00 0.00 36.69 4.46
605 734 1.002662 AGCTCTGCTGGATCAGGGA 59.997 57.895 0.00 0.00 36.69 4.20
606 735 3.644719 AGCTCTGCTGGATCAGGG 58.355 61.111 0.00 0.00 37.57 4.45
638 771 0.313043 TTGACAGGGAGACGTCGAAC 59.687 55.000 10.46 5.93 34.78 3.95
643 776 1.371558 GGCTTTGACAGGGAGACGT 59.628 57.895 0.00 0.00 0.00 4.34
666 799 2.100197 TGTGATAAGTCAGAGACCCCG 58.900 52.381 0.00 0.00 34.36 5.73
681 815 5.123936 CCTTCTCATGTCATGTGATGTGAT 58.876 41.667 16.23 0.00 33.37 3.06
727 870 3.868757 TCTACATGGTCACAGCAGTAC 57.131 47.619 0.00 0.00 0.00 2.73
730 873 2.413112 CGTTTCTACATGGTCACAGCAG 59.587 50.000 0.00 0.00 0.00 4.24
731 874 2.412870 CGTTTCTACATGGTCACAGCA 58.587 47.619 0.00 0.00 0.00 4.41
732 875 1.732259 CCGTTTCTACATGGTCACAGC 59.268 52.381 0.00 0.00 0.00 4.40
772 915 3.992943 TGATGTATTCAAACCGGGACT 57.007 42.857 6.32 0.00 0.00 3.85
773 916 3.128068 GGTTGATGTATTCAAACCGGGAC 59.872 47.826 6.32 0.00 44.83 4.46
774 917 3.349022 GGTTGATGTATTCAAACCGGGA 58.651 45.455 6.32 0.00 44.83 5.14
775 918 3.775661 GGTTGATGTATTCAAACCGGG 57.224 47.619 6.32 0.00 44.83 5.73
788 931 0.254178 CTGGGTCTGGGAGGTTGATG 59.746 60.000 0.00 0.00 0.00 3.07
822 965 7.386848 GCTGTGTCTACCAACTTAATTAACTCA 59.613 37.037 0.00 0.00 0.00 3.41
835 978 2.099141 GCTCATGCTGTGTCTACCAA 57.901 50.000 0.00 0.00 36.03 3.67
884 1032 8.248945 ACTCGGAGAAAATAAATAACGAGAAGA 58.751 33.333 12.86 0.00 46.62 2.87
904 1065 3.989838 ATCGTCGGCAGGACTCGGA 62.990 63.158 5.72 0.00 43.79 4.55
906 1067 2.024871 GATCGTCGGCAGGACTCG 59.975 66.667 5.72 0.00 43.79 4.18
908 1069 1.251527 AACTGATCGTCGGCAGGACT 61.252 55.000 16.60 2.89 43.79 3.85
909 1070 0.802607 GAACTGATCGTCGGCAGGAC 60.803 60.000 16.60 8.83 42.48 3.85
910 1071 0.965866 AGAACTGATCGTCGGCAGGA 60.966 55.000 16.60 0.00 36.47 3.86
930 1091 4.162690 GGAGGAATGCCGTCCGCT 62.163 66.667 6.49 0.00 43.03 5.52
941 1102 1.831736 GGAGGATGACGAAAGGAGGAA 59.168 52.381 0.00 0.00 0.00 3.36
947 1108 3.071580 GGCAGGAGGATGACGAAAG 57.928 57.895 0.00 0.00 0.00 2.62
984 1164 1.580893 CATGCGTATGTGCGTGTGC 60.581 57.895 5.20 0.00 44.85 4.57
993 1173 1.003464 TGGATCCCCATCATGCGTATG 59.997 52.381 9.90 7.22 37.58 2.39
994 1174 1.280133 CTGGATCCCCATCATGCGTAT 59.720 52.381 9.90 0.00 42.59 3.06
995 1175 0.686789 CTGGATCCCCATCATGCGTA 59.313 55.000 9.90 0.00 42.59 4.42
998 1179 1.605738 GGCTGGATCCCCATCATGC 60.606 63.158 9.90 2.27 42.59 4.06
1226 1413 1.827789 GTGTTGTGGCTGGCTTCCA 60.828 57.895 2.00 0.00 0.00 3.53
1230 1417 1.302832 GCTAGTGTTGTGGCTGGCT 60.303 57.895 2.00 0.00 36.48 4.75
1260 1448 2.175878 AGTGAGCAAGAATCGCAAGT 57.824 45.000 0.00 0.00 39.48 3.16
1286 1474 7.016361 ACGCTAAAGGCAAAAATACAGATAG 57.984 36.000 0.00 0.00 41.91 2.08
1287 1475 6.995511 ACGCTAAAGGCAAAAATACAGATA 57.004 33.333 0.00 0.00 41.91 1.98
1288 1476 5.897377 ACGCTAAAGGCAAAAATACAGAT 57.103 34.783 0.00 0.00 41.91 2.90
1289 1477 6.821665 AGATACGCTAAAGGCAAAAATACAGA 59.178 34.615 0.00 0.00 41.91 3.41
1290 1478 6.907212 CAGATACGCTAAAGGCAAAAATACAG 59.093 38.462 0.00 0.00 41.91 2.74
1291 1479 6.596106 TCAGATACGCTAAAGGCAAAAATACA 59.404 34.615 0.00 0.00 41.91 2.29
1292 1480 7.011828 TCAGATACGCTAAAGGCAAAAATAC 57.988 36.000 0.00 0.00 41.91 1.89
1293 1481 7.618502 TTCAGATACGCTAAAGGCAAAAATA 57.381 32.000 0.00 0.00 41.91 1.40
1294 1482 6.509418 TTCAGATACGCTAAAGGCAAAAAT 57.491 33.333 0.00 0.00 41.91 1.82
1295 1483 5.950758 TTCAGATACGCTAAAGGCAAAAA 57.049 34.783 0.00 0.00 41.91 1.94
1296 1484 5.414454 ACATTCAGATACGCTAAAGGCAAAA 59.586 36.000 0.00 0.00 41.91 2.44
1300 1488 5.266242 CAAACATTCAGATACGCTAAAGGC 58.734 41.667 0.00 0.00 37.64 4.35
1311 1499 2.450476 GACCAGGCCAAACATTCAGAT 58.550 47.619 5.01 0.00 0.00 2.90
1649 1842 3.710722 AGCCGGACCTTGCTCCAG 61.711 66.667 5.05 0.00 30.33 3.86
1673 1866 0.178975 ATCCGAGCTCGAGGATCCTT 60.179 55.000 36.59 8.89 43.27 3.36
1691 1884 4.380233 CGTACCGTGAAGAGGAAGTTGTAT 60.380 45.833 0.00 0.00 0.00 2.29
1750 1946 7.373493 ACATCCATTCTTTTGATTTGTCTGTC 58.627 34.615 0.00 0.00 0.00 3.51
1766 1980 3.871594 CCGGTTCTCACTAACATCCATTC 59.128 47.826 0.00 0.00 0.00 2.67
1768 1982 2.838202 ACCGGTTCTCACTAACATCCAT 59.162 45.455 0.00 0.00 0.00 3.41
1769 1983 2.232941 GACCGGTTCTCACTAACATCCA 59.767 50.000 9.42 0.00 0.00 3.41
1771 1985 2.232941 TGGACCGGTTCTCACTAACATC 59.767 50.000 15.59 0.00 0.00 3.06
1772 1986 2.253610 TGGACCGGTTCTCACTAACAT 58.746 47.619 15.59 0.00 0.00 2.71
1773 1987 1.707106 TGGACCGGTTCTCACTAACA 58.293 50.000 15.59 0.00 0.00 2.41
1774 1988 2.825861 TTGGACCGGTTCTCACTAAC 57.174 50.000 15.59 0.00 0.00 2.34
1776 1990 2.028476 CACATTGGACCGGTTCTCACTA 60.028 50.000 15.59 0.00 0.00 2.74
1778 1992 1.156736 CACATTGGACCGGTTCTCAC 58.843 55.000 15.59 0.00 0.00 3.51
1779 1993 1.052617 TCACATTGGACCGGTTCTCA 58.947 50.000 15.59 8.27 0.00 3.27
1780 1994 1.439679 GTCACATTGGACCGGTTCTC 58.560 55.000 15.59 5.51 0.00 2.87
1818 2032 1.067295 ATTGCCAAGTGTGAGAGGGA 58.933 50.000 0.00 0.00 0.00 4.20
1850 2064 7.102993 TGTCATGACTAAGCTAATAACAAGCA 58.897 34.615 25.55 0.00 42.62 3.91
1855 2069 9.261180 TGCTAATGTCATGACTAAGCTAATAAC 57.739 33.333 30.10 13.46 34.49 1.89
1860 2074 7.295322 AGATGCTAATGTCATGACTAAGCTA 57.705 36.000 30.10 22.37 34.49 3.32
1861 2075 6.172136 AGATGCTAATGTCATGACTAAGCT 57.828 37.500 30.10 21.84 34.49 3.74
1862 2076 6.259608 ACAAGATGCTAATGTCATGACTAAGC 59.740 38.462 26.83 26.83 34.21 3.09
1863 2077 7.783090 ACAAGATGCTAATGTCATGACTAAG 57.217 36.000 25.55 19.23 0.00 2.18
1864 2078 7.710907 GGTACAAGATGCTAATGTCATGACTAA 59.289 37.037 25.55 7.88 0.00 2.24
1865 2079 7.069950 AGGTACAAGATGCTAATGTCATGACTA 59.930 37.037 25.55 13.07 0.00 2.59
1868 2082 6.239217 AGGTACAAGATGCTAATGTCATGA 57.761 37.500 0.00 0.00 0.00 3.07
1869 2083 6.932356 AAGGTACAAGATGCTAATGTCATG 57.068 37.500 0.00 0.00 0.00 3.07
1870 2084 7.112122 TGAAAGGTACAAGATGCTAATGTCAT 58.888 34.615 0.00 0.00 0.00 3.06
1871 2085 6.472016 TGAAAGGTACAAGATGCTAATGTCA 58.528 36.000 0.00 0.00 0.00 3.58
1872 2086 6.985188 TGAAAGGTACAAGATGCTAATGTC 57.015 37.500 0.00 0.00 0.00 3.06
1873 2087 7.759489 TTTGAAAGGTACAAGATGCTAATGT 57.241 32.000 0.00 0.00 0.00 2.71
1883 3145 4.202010 CCCCGCATATTTGAAAGGTACAAG 60.202 45.833 0.00 0.00 0.00 3.16
1885 3147 3.283751 CCCCGCATATTTGAAAGGTACA 58.716 45.455 0.00 0.00 0.00 2.90
1902 3164 4.693042 TTTTGGTAGGATATGTACCCCG 57.307 45.455 7.97 0.00 39.50 5.73
1928 3190 4.368874 TTTGATATTCCACCACGCATTG 57.631 40.909 0.00 0.00 0.00 2.82
1929 3191 5.596836 ATTTTGATATTCCACCACGCATT 57.403 34.783 0.00 0.00 0.00 3.56
1933 3195 4.095782 ACCGAATTTTGATATTCCACCACG 59.904 41.667 0.00 0.00 32.12 4.94
1951 3215 9.834628 GATTTCTCACAAATTTATACAACCGAA 57.165 29.630 0.00 0.00 0.00 4.30
1952 3216 8.172484 CGATTTCTCACAAATTTATACAACCGA 58.828 33.333 0.00 0.00 0.00 4.69
1953 3217 7.044966 GCGATTTCTCACAAATTTATACAACCG 60.045 37.037 0.00 0.00 0.00 4.44
1954 3218 7.968405 AGCGATTTCTCACAAATTTATACAACC 59.032 33.333 0.00 0.00 0.00 3.77
1955 3219 8.895932 AGCGATTTCTCACAAATTTATACAAC 57.104 30.769 0.00 0.00 0.00 3.32
1960 3224 8.946085 TGTCTTAGCGATTTCTCACAAATTTAT 58.054 29.630 0.00 0.00 0.00 1.40
1964 3235 6.992063 ATGTCTTAGCGATTTCTCACAAAT 57.008 33.333 0.00 0.00 0.00 2.32
1978 3249 9.646427 TCTCTAAAAAGAAGAGAATGTCTTAGC 57.354 33.333 0.42 0.00 46.21 3.09
2030 3315 8.478877 TGGAGGATAGAAAGTTTGAGAATACTC 58.521 37.037 0.00 0.00 42.88 2.59
2054 3339 4.759516 AGTTTTAGTGGTGCGTTAATGG 57.240 40.909 0.00 0.00 0.00 3.16
2060 3354 4.170256 CAACAAAAGTTTTAGTGGTGCGT 58.830 39.130 0.00 0.00 0.00 5.24
2067 3361 9.816354 AGATGTAAATGCAACAAAAGTTTTAGT 57.184 25.926 0.00 0.00 0.00 2.24
2088 3382 5.046878 TCCACGTCCTACATTGTTAAGATGT 60.047 40.000 8.85 8.85 40.59 3.06
2091 3385 4.281435 TGTCCACGTCCTACATTGTTAAGA 59.719 41.667 0.00 0.00 0.00 2.10
2093 3387 4.603989 TGTCCACGTCCTACATTGTTAA 57.396 40.909 0.00 0.00 0.00 2.01
2095 3389 3.007506 TGATGTCCACGTCCTACATTGTT 59.992 43.478 8.01 0.00 34.09 2.83
2097 3391 3.245518 TGATGTCCACGTCCTACATTG 57.754 47.619 8.01 0.00 34.09 2.82
2098 3392 3.197766 ACATGATGTCCACGTCCTACATT 59.802 43.478 0.00 0.00 34.09 2.71
2107 3401 1.086696 GGAACCACATGATGTCCACG 58.913 55.000 0.00 0.00 0.00 4.94
2128 3422 1.595382 CATCCGCTCGAATGGGTCC 60.595 63.158 2.99 0.00 0.00 4.46
2129 3423 0.876342 GACATCCGCTCGAATGGGTC 60.876 60.000 2.99 0.72 0.00 4.46
2168 3462 0.810016 AAGTAGAAGTCCGACGAGGC 59.190 55.000 0.00 0.00 40.77 4.70
2296 3590 3.952628 CTCGTGCTTCCCCGGGAAC 62.953 68.421 26.32 12.40 36.71 3.62
2362 3656 3.322466 AGGAACTGCACCCGGAGG 61.322 66.667 0.73 0.00 45.38 4.30
2422 3716 2.605837 TGGTGTAGAGCGTGTTGAAA 57.394 45.000 0.00 0.00 0.00 2.69
2591 3885 2.154462 CCATGAACCAACCACTCAGAC 58.846 52.381 0.00 0.00 0.00 3.51
2592 3886 1.545428 GCCATGAACCAACCACTCAGA 60.545 52.381 0.00 0.00 0.00 3.27
2593 3887 0.883833 GCCATGAACCAACCACTCAG 59.116 55.000 0.00 0.00 0.00 3.35
2595 3889 1.549203 ATGCCATGAACCAACCACTC 58.451 50.000 0.00 0.00 0.00 3.51
2596 3890 2.897271 TATGCCATGAACCAACCACT 57.103 45.000 0.00 0.00 0.00 4.00
2599 3893 1.269206 CGCATATGCCATGAACCAACC 60.269 52.381 21.77 0.00 37.91 3.77
2601 3895 0.385029 GCGCATATGCCATGAACCAA 59.615 50.000 21.77 0.00 37.91 3.67
2603 3897 0.599558 ATGCGCATATGCCATGAACC 59.400 50.000 24.02 2.84 37.91 3.62
2605 3899 1.001158 CACATGCGCATATGCCATGAA 60.001 47.619 38.03 19.87 44.75 2.57
2606 3900 0.594110 CACATGCGCATATGCCATGA 59.406 50.000 38.03 19.41 44.75 3.07
2607 3901 0.388006 CCACATGCGCATATGCCATG 60.388 55.000 34.00 34.00 46.01 3.66
2608 3902 0.824595 ACCACATGCGCATATGCCAT 60.825 50.000 23.07 20.60 37.91 4.40
2609 3903 1.446516 GACCACATGCGCATATGCCA 61.447 55.000 23.07 19.37 37.91 4.92
2610 3904 1.283793 GACCACATGCGCATATGCC 59.716 57.895 23.07 12.70 37.91 4.40
2611 3905 1.082561 CGACCACATGCGCATATGC 60.083 57.895 23.07 18.08 37.78 3.14
2612 3906 1.570967 CCGACCACATGCGCATATG 59.429 57.895 24.84 23.13 0.00 1.78
2613 3907 2.253758 GCCGACCACATGCGCATAT 61.254 57.895 24.84 9.71 0.00 1.78
2614 3908 2.894879 GCCGACCACATGCGCATA 60.895 61.111 24.84 0.00 0.00 3.14
2625 3919 0.605319 TCAAACAGACATGGCCGACC 60.605 55.000 0.00 0.00 0.00 4.79
2630 3924 4.256920 ACTACATCTCAAACAGACATGGC 58.743 43.478 0.00 0.00 32.26 4.40
2635 3929 8.223769 CACATTTGTACTACATCTCAAACAGAC 58.776 37.037 0.00 0.00 32.26 3.51
2651 3945 4.282068 CACAACTGCAGACACATTTGTAC 58.718 43.478 23.35 0.00 40.27 2.90
2652 3946 3.243035 GCACAACTGCAGACACATTTGTA 60.243 43.478 23.35 0.00 40.27 2.41
2653 3947 2.480073 GCACAACTGCAGACACATTTGT 60.480 45.455 23.35 16.13 42.20 2.83
2676 3970 5.004821 CGACATAAACCTCGATCTTGTCTTG 59.995 44.000 0.00 0.00 32.01 3.02
2718 4012 5.810587 GCGATATGAACACTCAAACCTTCTA 59.189 40.000 0.00 0.00 34.49 2.10
2738 4032 0.249031 TCGCATTCTCATGACGCGAT 60.249 50.000 15.93 0.00 43.73 4.58
2756 4050 5.279384 ACGTCATACACTATTCGTGGATTC 58.721 41.667 0.00 0.00 45.02 2.52
2798 4092 5.009436 AGGGCATCTCATACTATCACTCT 57.991 43.478 0.00 0.00 0.00 3.24
2820 4114 2.485659 AGCTTCTCATCATCCCCTTGA 58.514 47.619 0.00 0.00 0.00 3.02
2861 4155 2.557924 GCCATCATGTCACAAAGGTCAA 59.442 45.455 0.00 0.00 0.00 3.18
2895 4189 4.075682 TCATGTTAAAATCGCCACCAAGA 58.924 39.130 0.00 0.00 0.00 3.02
2967 4261 3.748863 CCAGGTCGGTGATGAAGAG 57.251 57.895 0.00 0.00 0.00 2.85
2978 4272 1.147376 TCCCAACAACACCAGGTCG 59.853 57.895 0.00 0.00 0.00 4.79
2994 4288 2.154462 CGCCCATGGAGATAAATGTCC 58.846 52.381 15.22 0.00 40.45 4.02
3018 4312 4.029809 GTTCCGGACCAGGGTGGG 62.030 72.222 1.83 0.00 43.37 4.61
3031 4325 0.041576 GCAAAGAACACGGTCGTTCC 60.042 55.000 15.18 0.00 45.27 3.62
3050 4344 1.220749 CGTCCCATAGGTGGTGGTG 59.779 63.158 0.00 0.00 44.48 4.17
3064 4358 3.335729 ATTGGGGGTGGGTCGTCC 61.336 66.667 0.00 0.00 0.00 4.79
3082 4376 3.626670 GGAGGCAAGATATCATAGCATGC 59.373 47.826 10.51 10.51 0.00 4.06
3090 4384 0.106708 GCGGTGGAGGCAAGATATCA 59.893 55.000 5.32 0.00 0.00 2.15
3104 4398 1.078759 GACAGTGATCGGAAGCGGTG 61.079 60.000 0.00 0.00 0.00 4.94
3105 4399 1.215647 GACAGTGATCGGAAGCGGT 59.784 57.895 0.00 0.00 0.00 5.68
3106 4400 1.519455 GGACAGTGATCGGAAGCGG 60.519 63.158 0.00 0.00 0.00 5.52
3107 4401 1.874019 CGGACAGTGATCGGAAGCG 60.874 63.158 0.00 0.00 0.00 4.68
3109 4403 0.738975 TAGCGGACAGTGATCGGAAG 59.261 55.000 0.00 0.00 0.00 3.46
3111 4405 0.393944 ACTAGCGGACAGTGATCGGA 60.394 55.000 0.00 0.00 0.00 4.55
3112 4406 0.456221 AACTAGCGGACAGTGATCGG 59.544 55.000 0.00 0.00 0.00 4.18
3113 4407 1.135373 ACAACTAGCGGACAGTGATCG 60.135 52.381 0.00 0.98 0.00 3.69
3124 6136 3.304794 GGAGGAGCAGTATACAACTAGCG 60.305 52.174 5.50 0.00 35.76 4.26
3137 6149 3.694058 ATGCGCTTGGGAGGAGCAG 62.694 63.158 9.73 0.00 42.07 4.24
3155 6167 3.596214 GAAGTGGAATCTTCGCCTACAA 58.404 45.455 0.00 0.00 35.26 2.41
3156 6168 3.247006 GAAGTGGAATCTTCGCCTACA 57.753 47.619 0.00 0.00 35.26 2.74
3206 6218 2.467880 GGATAGAGTTCCAGGTGGACA 58.532 52.381 0.00 0.00 45.39 4.02
3235 6247 3.554934 AGATGCGCCAAAATGGATCTTA 58.445 40.909 4.18 0.00 40.96 2.10
3238 6250 4.217118 AGAATAGATGCGCCAAAATGGATC 59.783 41.667 4.18 0.00 40.96 3.36
3241 6253 3.607775 CGAGAATAGATGCGCCAAAATGG 60.608 47.826 4.18 0.00 41.55 3.16
3243 6255 3.206150 ACGAGAATAGATGCGCCAAAAT 58.794 40.909 4.18 0.00 0.00 1.82
3244 6256 2.607635 GACGAGAATAGATGCGCCAAAA 59.392 45.455 4.18 0.00 0.00 2.44
3263 6275 2.417933 CACCATGCAGTAGCTTTGAGAC 59.582 50.000 0.00 0.00 42.74 3.36
3289 6301 0.889306 GTACGAGCACTCCAACTCCT 59.111 55.000 0.00 0.00 0.00 3.69
3290 6302 0.108756 GGTACGAGCACTCCAACTCC 60.109 60.000 0.00 0.00 0.00 3.85
3306 6318 6.213802 TCTGTGTGAATATGTTACCAAGGGTA 59.786 38.462 0.00 0.00 37.09 3.69
3334 6346 4.720649 AGATAAGCTCACACGCTAGAAA 57.279 40.909 0.00 0.00 39.86 2.52
3342 6354 3.312828 CAGCCGATAGATAAGCTCACAC 58.687 50.000 0.00 0.00 39.76 3.82
3343 6355 2.297315 CCAGCCGATAGATAAGCTCACA 59.703 50.000 0.00 0.00 39.76 3.58
3346 6358 2.558795 TGTCCAGCCGATAGATAAGCTC 59.441 50.000 0.00 0.00 39.76 4.09
3348 6360 3.257393 CATGTCCAGCCGATAGATAAGC 58.743 50.000 0.00 0.00 39.76 3.09
3373 6388 2.194212 GGAGAGCGGACGCATCCTA 61.194 63.158 24.55 0.00 43.73 2.94
3416 6431 0.596082 AGGTATGCGCGCTTTTGTTT 59.404 45.000 33.29 8.93 0.00 2.83
3419 6434 1.226379 CCAGGTATGCGCGCTTTTG 60.226 57.895 33.29 21.84 0.00 2.44
3420 6435 2.406616 CCCAGGTATGCGCGCTTTT 61.407 57.895 33.29 18.97 0.00 2.27
3427 6442 2.828549 GCCAACCCCAGGTATGCG 60.829 66.667 0.00 0.00 33.12 4.73
3486 6501 2.125350 CTCCCTCTTGCAGTCGGC 60.125 66.667 0.00 0.00 45.13 5.54
3490 6505 1.649321 TCATGTCTCCCTCTTGCAGT 58.351 50.000 0.00 0.00 0.00 4.40
3507 6522 6.918626 TGAATCTTCAAAAACACAGTGTTCA 58.081 32.000 19.41 6.36 35.24 3.18
3522 6537 3.056179 TCGGTGTGTAGCATGAATCTTCA 60.056 43.478 0.00 0.00 42.14 3.02
3523 6538 3.521560 TCGGTGTGTAGCATGAATCTTC 58.478 45.455 0.00 0.00 0.00 2.87
3536 6551 4.035208 GTGATTCTTTTGTCTTCGGTGTGT 59.965 41.667 0.00 0.00 0.00 3.72
3541 6556 3.499918 AGCTGTGATTCTTTTGTCTTCGG 59.500 43.478 0.00 0.00 0.00 4.30
3543 6558 6.064846 TGAAGCTGTGATTCTTTTGTCTTC 57.935 37.500 0.00 0.00 0.00 2.87
3569 6584 2.946785 AGTCCGATTACCCACCTAGAG 58.053 52.381 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.