Multiple sequence alignment - TraesCS3D01G423100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G423100 chr3D 100.000 4204 0 0 1 4204 535770004 535774207 0.000000e+00 7764.0
1 TraesCS3D01G423100 chr3D 84.762 105 6 6 175 278 535750200 535750295 3.460000e-16 97.1
2 TraesCS3D01G423100 chr3A 86.983 2927 162 78 536 3343 671015939 671018765 0.000000e+00 3092.0
3 TraesCS3D01G423100 chr3A 93.377 302 10 2 3711 4002 671018964 671019265 4.990000e-119 438.0
4 TraesCS3D01G423100 chr3A 84.649 228 26 3 316 534 671015673 671015900 7.080000e-53 219.0
5 TraesCS3D01G423100 chr3A 82.589 224 6 8 3401 3617 671018751 671018948 2.600000e-37 167.0
6 TraesCS3D01G423100 chr3A 100.000 38 0 0 245 282 671015210 671015247 2.100000e-08 71.3
7 TraesCS3D01G423100 chr3B 91.463 1804 95 26 1549 3343 707413006 707414759 0.000000e+00 2423.0
8 TraesCS3D01G423100 chr3B 82.045 1242 77 54 389 1541 707411783 707412967 0.000000e+00 924.0
9 TraesCS3D01G423100 chr3B 94.198 293 12 3 3711 4002 707414987 707415275 3.860000e-120 442.0
10 TraesCS3D01G423100 chr3B 90.987 233 5 8 3401 3617 707414745 707414977 2.460000e-77 300.0
11 TraesCS3D01G423100 chr3B 90.909 187 6 3 4017 4203 707415260 707415435 1.510000e-59 241.0
12 TraesCS3D01G423100 chr3B 91.964 112 7 2 173 282 707411626 707411737 5.630000e-34 156.0
13 TraesCS3D01G423100 chr6B 89.979 479 35 6 2729 3204 650721925 650721457 1.290000e-169 606.0
14 TraesCS3D01G423100 chr6B 93.396 106 7 0 3611 3716 214085054 214085159 1.560000e-34 158.0
15 TraesCS3D01G423100 chr6B 93.269 104 7 0 3611 3714 551910560 551910663 2.020000e-33 154.0
16 TraesCS3D01G423100 chr6B 96.104 77 3 0 2641 2717 650721986 650721910 4.410000e-25 126.0
17 TraesCS3D01G423100 chr4B 89.979 479 35 6 2729 3204 32263852 32263384 1.290000e-169 606.0
18 TraesCS3D01G423100 chr5B 95.098 102 5 0 3611 3712 573045806 573045705 1.210000e-35 161.0
19 TraesCS3D01G423100 chr1B 94.286 105 6 0 3611 3715 510795205 510795101 1.210000e-35 161.0
20 TraesCS3D01G423100 chr5D 94.231 104 6 0 3611 3714 544700486 544700383 4.350000e-35 159.0
21 TraesCS3D01G423100 chr2A 94.231 104 6 0 3611 3714 16546944 16547047 4.350000e-35 159.0
22 TraesCS3D01G423100 chr1A 91.150 113 10 0 3611 3723 387353078 387352966 2.020000e-33 154.0
23 TraesCS3D01G423100 chr2B 90.517 116 9 2 3611 3724 11907520 11907405 7.280000e-33 152.0
24 TraesCS3D01G423100 chr7B 92.381 105 8 0 3611 3715 134635085 134635189 2.620000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G423100 chr3D 535770004 535774207 4203 False 7764.000000 7764 100.0000 1 4204 1 chr3D.!!$F2 4203
1 TraesCS3D01G423100 chr3A 671015210 671019265 4055 False 797.460000 3092 89.5196 245 4002 5 chr3A.!!$F1 3757
2 TraesCS3D01G423100 chr3B 707411626 707415435 3809 False 747.666667 2423 90.2610 173 4203 6 chr3B.!!$F1 4030
3 TraesCS3D01G423100 chr6B 650721457 650721986 529 True 366.000000 606 93.0415 2641 3204 2 chr6B.!!$R1 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
624 1086 0.031043 CATCTCTCTCGAGGCAGCAG 59.969 60.0 13.56 1.8 37.86 4.24 F
961 1479 0.035036 TGTCCGTCGAGACTCTCTGT 59.965 55.0 12.88 0.0 37.66 3.41 F
1807 2408 0.745845 CTGTCGCCCCAAATCAGGAG 60.746 60.0 0.00 0.0 0.00 3.69 F
1822 2423 0.947244 AGGAGCTTGCTTCGTTGTTG 59.053 50.0 0.00 0.0 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1653 2252 0.109597 CTTTCCATGGTTGCAGCGAC 60.110 55.0 12.58 3.86 0.0 5.19 R
1816 2417 0.177836 AGCCAAAACCCAGCAACAAC 59.822 50.0 0.00 0.00 0.0 3.32 R
2676 3291 0.401738 CAGGGGCTGGAGACTTGAAA 59.598 55.0 0.00 0.00 0.0 2.69 R
3750 4399 0.678950 CCACAAACCCCACCAATCAC 59.321 55.0 0.00 0.00 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.813513 AGTTTGAATCCAGCTCGGTG 58.186 50.000 2.68 0.00 35.57 4.94
20 21 0.804989 GTTTGAATCCAGCTCGGTGG 59.195 55.000 8.80 8.80 39.19 4.61
21 22 0.322456 TTTGAATCCAGCTCGGTGGG 60.322 55.000 14.52 0.00 38.26 4.61
22 23 1.198094 TTGAATCCAGCTCGGTGGGA 61.198 55.000 14.52 3.09 38.26 4.37
23 24 1.198094 TGAATCCAGCTCGGTGGGAA 61.198 55.000 14.52 0.00 38.26 3.97
24 25 0.035439 GAATCCAGCTCGGTGGGAAA 60.035 55.000 14.52 0.00 38.26 3.13
25 26 0.625849 AATCCAGCTCGGTGGGAAAT 59.374 50.000 14.52 0.00 38.26 2.17
26 27 0.625849 ATCCAGCTCGGTGGGAAATT 59.374 50.000 14.52 0.00 38.26 1.82
27 28 0.035439 TCCAGCTCGGTGGGAAATTC 60.035 55.000 14.52 0.00 38.26 2.17
28 29 0.035056 CCAGCTCGGTGGGAAATTCT 60.035 55.000 7.25 0.00 33.46 2.40
29 30 1.614317 CCAGCTCGGTGGGAAATTCTT 60.614 52.381 7.25 0.00 33.46 2.52
30 31 1.470098 CAGCTCGGTGGGAAATTCTTG 59.530 52.381 0.00 0.00 0.00 3.02
31 32 0.171231 GCTCGGTGGGAAATTCTTGC 59.829 55.000 0.00 0.00 0.00 4.01
32 33 0.447801 CTCGGTGGGAAATTCTTGCG 59.552 55.000 0.00 0.00 0.00 4.85
33 34 1.154035 CGGTGGGAAATTCTTGCGC 60.154 57.895 0.00 0.00 0.00 6.09
34 35 1.586154 CGGTGGGAAATTCTTGCGCT 61.586 55.000 9.73 0.00 0.00 5.92
35 36 1.459450 GGTGGGAAATTCTTGCGCTA 58.541 50.000 9.73 0.00 0.00 4.26
36 37 2.024414 GGTGGGAAATTCTTGCGCTAT 58.976 47.619 9.73 0.00 0.00 2.97
37 38 2.427095 GGTGGGAAATTCTTGCGCTATT 59.573 45.455 9.73 0.16 0.00 1.73
38 39 3.119137 GGTGGGAAATTCTTGCGCTATTT 60.119 43.478 9.73 9.32 0.00 1.40
39 40 3.859386 GTGGGAAATTCTTGCGCTATTTG 59.141 43.478 9.73 0.00 0.00 2.32
40 41 3.509575 TGGGAAATTCTTGCGCTATTTGT 59.490 39.130 9.73 0.00 0.00 2.83
41 42 4.105486 GGGAAATTCTTGCGCTATTTGTC 58.895 43.478 9.73 0.00 0.00 3.18
42 43 4.105486 GGAAATTCTTGCGCTATTTGTCC 58.895 43.478 9.73 3.80 0.00 4.02
43 44 3.782889 AATTCTTGCGCTATTTGTCCC 57.217 42.857 9.73 0.00 0.00 4.46
44 45 2.489938 TTCTTGCGCTATTTGTCCCT 57.510 45.000 9.73 0.00 0.00 4.20
45 46 2.024176 TCTTGCGCTATTTGTCCCTC 57.976 50.000 9.73 0.00 0.00 4.30
46 47 1.017387 CTTGCGCTATTTGTCCCTCC 58.983 55.000 9.73 0.00 0.00 4.30
47 48 0.393808 TTGCGCTATTTGTCCCTCCC 60.394 55.000 9.73 0.00 0.00 4.30
48 49 1.271840 TGCGCTATTTGTCCCTCCCT 61.272 55.000 9.73 0.00 0.00 4.20
49 50 0.815615 GCGCTATTTGTCCCTCCCTG 60.816 60.000 0.00 0.00 0.00 4.45
50 51 0.815615 CGCTATTTGTCCCTCCCTGC 60.816 60.000 0.00 0.00 0.00 4.85
51 52 0.548510 GCTATTTGTCCCTCCCTGCT 59.451 55.000 0.00 0.00 0.00 4.24
52 53 1.748591 GCTATTTGTCCCTCCCTGCTG 60.749 57.143 0.00 0.00 0.00 4.41
53 54 0.255890 TATTTGTCCCTCCCTGCTGC 59.744 55.000 0.00 0.00 0.00 5.25
54 55 1.504275 ATTTGTCCCTCCCTGCTGCT 61.504 55.000 0.00 0.00 0.00 4.24
55 56 2.416107 TTTGTCCCTCCCTGCTGCTG 62.416 60.000 0.00 0.00 0.00 4.41
56 57 3.005539 GTCCCTCCCTGCTGCTGA 61.006 66.667 8.20 0.00 0.00 4.26
57 58 2.203983 TCCCTCCCTGCTGCTGAA 60.204 61.111 8.20 0.00 0.00 3.02
58 59 2.045536 CCCTCCCTGCTGCTGAAC 60.046 66.667 8.20 0.00 0.00 3.18
59 60 2.045536 CCTCCCTGCTGCTGAACC 60.046 66.667 8.20 0.00 0.00 3.62
60 61 2.435586 CTCCCTGCTGCTGAACCG 60.436 66.667 8.20 0.00 0.00 4.44
61 62 3.965539 CTCCCTGCTGCTGAACCGG 62.966 68.421 8.20 0.00 0.00 5.28
62 63 4.020617 CCCTGCTGCTGAACCGGA 62.021 66.667 9.46 0.00 0.00 5.14
63 64 2.270205 CCTGCTGCTGAACCGGAT 59.730 61.111 9.46 0.00 0.00 4.18
64 65 1.377725 CCTGCTGCTGAACCGGATT 60.378 57.895 9.46 0.00 0.00 3.01
65 66 1.651240 CCTGCTGCTGAACCGGATTG 61.651 60.000 9.46 0.00 0.00 2.67
66 67 0.674581 CTGCTGCTGAACCGGATTGA 60.675 55.000 9.46 0.00 0.00 2.57
67 68 0.250684 TGCTGCTGAACCGGATTGAA 60.251 50.000 9.46 0.00 0.00 2.69
68 69 0.449388 GCTGCTGAACCGGATTGAAG 59.551 55.000 9.46 0.00 0.00 3.02
69 70 1.945819 GCTGCTGAACCGGATTGAAGA 60.946 52.381 9.46 0.00 0.00 2.87
70 71 2.426522 CTGCTGAACCGGATTGAAGAA 58.573 47.619 9.46 0.00 0.00 2.52
71 72 2.813754 CTGCTGAACCGGATTGAAGAAA 59.186 45.455 9.46 0.00 0.00 2.52
72 73 3.218453 TGCTGAACCGGATTGAAGAAAA 58.782 40.909 9.46 0.00 0.00 2.29
73 74 3.004315 TGCTGAACCGGATTGAAGAAAAC 59.996 43.478 9.46 0.00 0.00 2.43
74 75 3.004315 GCTGAACCGGATTGAAGAAAACA 59.996 43.478 9.46 0.00 0.00 2.83
75 76 4.499019 GCTGAACCGGATTGAAGAAAACAA 60.499 41.667 9.46 0.00 0.00 2.83
76 77 4.927422 TGAACCGGATTGAAGAAAACAAC 58.073 39.130 9.46 0.00 0.00 3.32
77 78 4.642885 TGAACCGGATTGAAGAAAACAACT 59.357 37.500 9.46 0.00 0.00 3.16
78 79 4.830826 ACCGGATTGAAGAAAACAACTC 57.169 40.909 9.46 0.00 0.00 3.01
79 80 3.250040 ACCGGATTGAAGAAAACAACTCG 59.750 43.478 9.46 0.00 0.00 4.18
80 81 3.250040 CCGGATTGAAGAAAACAACTCGT 59.750 43.478 0.00 0.00 0.00 4.18
81 82 4.211389 CGGATTGAAGAAAACAACTCGTG 58.789 43.478 0.00 0.00 0.00 4.35
82 83 4.537015 GGATTGAAGAAAACAACTCGTGG 58.463 43.478 0.00 0.00 0.00 4.94
83 84 4.036380 GGATTGAAGAAAACAACTCGTGGT 59.964 41.667 0.00 0.00 0.00 4.16
84 85 4.349663 TTGAAGAAAACAACTCGTGGTG 57.650 40.909 0.00 0.00 0.00 4.17
85 86 2.096819 TGAAGAAAACAACTCGTGGTGC 59.903 45.455 1.68 0.00 0.00 5.01
86 87 1.021968 AGAAAACAACTCGTGGTGCC 58.978 50.000 1.68 0.00 0.00 5.01
87 88 0.736053 GAAAACAACTCGTGGTGCCA 59.264 50.000 1.68 0.00 0.00 4.92
88 89 1.336755 GAAAACAACTCGTGGTGCCAT 59.663 47.619 1.68 0.00 0.00 4.40
89 90 0.667993 AAACAACTCGTGGTGCCATG 59.332 50.000 1.68 4.11 0.00 3.66
90 91 1.795170 AACAACTCGTGGTGCCATGC 61.795 55.000 1.68 0.00 33.28 4.06
91 92 2.672996 AACTCGTGGTGCCATGCC 60.673 61.111 5.59 0.00 33.28 4.40
92 93 4.722700 ACTCGTGGTGCCATGCCC 62.723 66.667 5.59 0.00 33.28 5.36
96 97 3.694538 GTGGTGCCATGCCCCAAC 61.695 66.667 0.00 0.00 0.00 3.77
109 110 4.924187 CCAACGGCCCAACCCCAA 62.924 66.667 0.00 0.00 33.26 4.12
110 111 3.302344 CAACGGCCCAACCCCAAG 61.302 66.667 0.00 0.00 33.26 3.61
111 112 3.503839 AACGGCCCAACCCCAAGA 61.504 61.111 0.00 0.00 33.26 3.02
112 113 3.507377 AACGGCCCAACCCCAAGAG 62.507 63.158 0.00 0.00 33.26 2.85
115 116 4.344865 GCCCAACCCCAAGAGCGA 62.345 66.667 0.00 0.00 0.00 4.93
116 117 2.045926 CCCAACCCCAAGAGCGAG 60.046 66.667 0.00 0.00 0.00 5.03
117 118 2.750350 CCAACCCCAAGAGCGAGT 59.250 61.111 0.00 0.00 0.00 4.18
118 119 1.376037 CCAACCCCAAGAGCGAGTC 60.376 63.158 0.00 0.00 0.00 3.36
119 120 1.371183 CAACCCCAAGAGCGAGTCA 59.629 57.895 0.00 0.00 0.00 3.41
120 121 0.951040 CAACCCCAAGAGCGAGTCAC 60.951 60.000 0.00 0.00 0.00 3.67
121 122 2.125912 CCCCAAGAGCGAGTCACG 60.126 66.667 0.00 0.00 45.66 4.35
131 132 3.378552 GAGTCACGCATGTCTCGC 58.621 61.111 0.00 0.00 32.50 5.03
132 133 2.125912 AGTCACGCATGTCTCGCC 60.126 61.111 0.00 0.00 0.00 5.54
133 134 2.432456 GTCACGCATGTCTCGCCA 60.432 61.111 0.00 0.00 0.00 5.69
134 135 2.027073 GTCACGCATGTCTCGCCAA 61.027 57.895 0.00 0.00 0.00 4.52
135 136 2.027073 TCACGCATGTCTCGCCAAC 61.027 57.895 0.00 0.00 0.00 3.77
136 137 2.030412 ACGCATGTCTCGCCAACA 59.970 55.556 0.00 0.00 0.00 3.33
137 138 2.317609 ACGCATGTCTCGCCAACAC 61.318 57.895 0.00 0.00 0.00 3.32
138 139 2.316867 CGCATGTCTCGCCAACACA 61.317 57.895 0.00 0.00 0.00 3.72
139 140 1.840630 CGCATGTCTCGCCAACACAA 61.841 55.000 0.00 0.00 0.00 3.33
140 141 0.385974 GCATGTCTCGCCAACACAAC 60.386 55.000 0.00 0.00 0.00 3.32
141 142 0.943673 CATGTCTCGCCAACACAACA 59.056 50.000 0.00 0.00 0.00 3.33
142 143 0.944386 ATGTCTCGCCAACACAACAC 59.056 50.000 0.00 0.00 0.00 3.32
143 144 0.107897 TGTCTCGCCAACACAACACT 60.108 50.000 0.00 0.00 0.00 3.55
144 145 0.582005 GTCTCGCCAACACAACACTC 59.418 55.000 0.00 0.00 0.00 3.51
145 146 0.464036 TCTCGCCAACACAACACTCT 59.536 50.000 0.00 0.00 0.00 3.24
146 147 0.861837 CTCGCCAACACAACACTCTC 59.138 55.000 0.00 0.00 0.00 3.20
147 148 0.531974 TCGCCAACACAACACTCTCC 60.532 55.000 0.00 0.00 0.00 3.71
148 149 1.507141 CGCCAACACAACACTCTCCC 61.507 60.000 0.00 0.00 0.00 4.30
149 150 1.507141 GCCAACACAACACTCTCCCG 61.507 60.000 0.00 0.00 0.00 5.14
150 151 1.507141 CCAACACAACACTCTCCCGC 61.507 60.000 0.00 0.00 0.00 6.13
151 152 1.227853 AACACAACACTCTCCCGCC 60.228 57.895 0.00 0.00 0.00 6.13
152 153 2.358737 CACAACACTCTCCCGCCC 60.359 66.667 0.00 0.00 0.00 6.13
153 154 2.526873 ACAACACTCTCCCGCCCT 60.527 61.111 0.00 0.00 0.00 5.19
154 155 2.046892 CAACACTCTCCCGCCCTG 60.047 66.667 0.00 0.00 0.00 4.45
155 156 4.021925 AACACTCTCCCGCCCTGC 62.022 66.667 0.00 0.00 0.00 4.85
157 158 3.790437 CACTCTCCCGCCCTGCAT 61.790 66.667 0.00 0.00 0.00 3.96
158 159 3.790437 ACTCTCCCGCCCTGCATG 61.790 66.667 0.00 0.00 0.00 4.06
167 168 4.720902 CCCTGCATGCCGTGTCCA 62.721 66.667 16.68 0.00 0.00 4.02
168 169 2.672651 CCTGCATGCCGTGTCCAA 60.673 61.111 16.68 0.00 0.00 3.53
169 170 2.267351 CCTGCATGCCGTGTCCAAA 61.267 57.895 16.68 0.00 0.00 3.28
170 171 1.210931 CTGCATGCCGTGTCCAAAG 59.789 57.895 16.68 0.00 0.00 2.77
171 172 2.126346 GCATGCCGTGTCCAAAGC 60.126 61.111 6.36 0.00 0.00 3.51
195 196 5.485353 CCATATCATAGGTGGACATGGTAGT 59.515 44.000 0.00 0.00 34.94 2.73
207 208 1.094785 ATGGTAGTCAATTGCGTGCC 58.905 50.000 0.00 3.92 0.00 5.01
220 222 4.643387 GTGCCCGCACTCCAACCT 62.643 66.667 12.54 0.00 43.12 3.50
228 230 1.228657 GCACTCCAACCTGTTCCGTC 61.229 60.000 0.00 0.00 0.00 4.79
230 232 1.374252 CTCCAACCTGTTCCGTCCG 60.374 63.158 0.00 0.00 0.00 4.79
231 233 2.095978 CTCCAACCTGTTCCGTCCGT 62.096 60.000 0.00 0.00 0.00 4.69
232 234 1.959226 CCAACCTGTTCCGTCCGTG 60.959 63.158 0.00 0.00 0.00 4.94
233 235 2.280592 AACCTGTTCCGTCCGTGC 60.281 61.111 0.00 0.00 0.00 5.34
288 312 0.183492 TACCCGTACGCCCAGTAGAT 59.817 55.000 10.49 0.00 35.72 1.98
292 316 2.434428 CCGTACGCCCAGTAGATAGAT 58.566 52.381 10.49 0.00 35.72 1.98
302 326 5.300792 GCCCAGTAGATAGATAGATAGGCAC 59.699 48.000 0.00 0.00 35.58 5.01
303 327 6.668645 CCCAGTAGATAGATAGATAGGCACT 58.331 44.000 0.00 0.00 46.37 4.40
338 736 1.200252 TCTCAACCTCGCTTTCTCTCG 59.800 52.381 0.00 0.00 0.00 4.04
369 767 1.765657 GCTCCTCTCCCAGCTCCAT 60.766 63.158 0.00 0.00 32.48 3.41
372 770 1.563410 CTCCTCTCCCAGCTCCATTTT 59.437 52.381 0.00 0.00 0.00 1.82
374 772 1.563410 CCTCTCCCAGCTCCATTTTCT 59.437 52.381 0.00 0.00 0.00 2.52
381 779 4.949856 TCCCAGCTCCATTTTCTAAACATC 59.050 41.667 0.00 0.00 0.00 3.06
388 786 6.038714 GCTCCATTTTCTAAACATCTCCGATT 59.961 38.462 0.00 0.00 0.00 3.34
391 789 7.829211 TCCATTTTCTAAACATCTCCGATTTCT 59.171 33.333 0.00 0.00 0.00 2.52
399 797 3.056821 ACATCTCCGATTTCTCGTCACAA 60.057 43.478 0.00 0.00 43.49 3.33
403 801 3.575630 TCCGATTTCTCGTCACAAGAAG 58.424 45.455 0.00 0.00 43.49 2.85
407 805 4.090642 CGATTTCTCGTCACAAGAAGGAAG 59.909 45.833 0.00 0.00 40.07 3.46
430 828 1.885388 CACGTTGGCACACGGAAGA 60.885 57.895 20.44 0.00 39.29 2.87
432 830 2.604174 CGTTGGCACACGGAAGACC 61.604 63.158 12.35 0.00 39.29 3.85
445 850 5.469084 ACACGGAAGACCTTGTTTAAGAATC 59.531 40.000 0.00 0.00 44.48 2.52
452 857 5.648092 AGACCTTGTTTAAGAATCCGAATGG 59.352 40.000 0.00 0.00 35.92 3.16
471 876 0.108851 GCAAAAATTCCACGGCGGAT 60.109 50.000 13.24 0.00 45.80 4.18
472 877 1.133407 GCAAAAATTCCACGGCGGATA 59.867 47.619 13.24 0.00 45.80 2.59
476 881 2.930826 AATTCCACGGCGGATATTCT 57.069 45.000 13.24 0.00 45.80 2.40
477 882 4.345859 AAATTCCACGGCGGATATTCTA 57.654 40.909 13.24 0.00 45.80 2.10
478 883 4.553330 AATTCCACGGCGGATATTCTAT 57.447 40.909 13.24 0.00 45.80 1.98
482 889 4.813027 TCCACGGCGGATATTCTATAAAC 58.187 43.478 13.24 0.00 39.64 2.01
530 944 1.592669 GCGTCACCTATGCGCTCAT 60.593 57.895 9.73 0.00 43.48 2.90
534 948 2.218759 CGTCACCTATGCGCTCATAAAC 59.781 50.000 9.73 0.00 34.97 2.01
536 950 3.491267 GTCACCTATGCGCTCATAAACTC 59.509 47.826 9.73 0.00 34.97 3.01
548 995 6.348213 GCGCTCATAAACTCTTTCTTTTACCA 60.348 38.462 0.00 0.00 0.00 3.25
598 1059 2.813226 AAGCTTGGGCCGCACGATTA 62.813 55.000 0.00 0.00 39.73 1.75
615 1077 6.310960 CACGATTATTCTACCATCTCTCTCG 58.689 44.000 0.00 0.00 0.00 4.04
616 1078 6.147985 CACGATTATTCTACCATCTCTCTCGA 59.852 42.308 0.00 0.00 0.00 4.04
617 1079 6.370442 ACGATTATTCTACCATCTCTCTCGAG 59.630 42.308 5.93 5.93 38.67 4.04
618 1080 6.183360 CGATTATTCTACCATCTCTCTCGAGG 60.183 46.154 13.56 3.44 37.86 4.63
619 1081 2.264005 TCTACCATCTCTCTCGAGGC 57.736 55.000 13.56 0.00 37.86 4.70
620 1082 1.490910 TCTACCATCTCTCTCGAGGCA 59.509 52.381 13.56 0.00 37.86 4.75
621 1083 1.879380 CTACCATCTCTCTCGAGGCAG 59.121 57.143 13.56 8.83 37.86 4.85
622 1084 1.363443 CCATCTCTCTCGAGGCAGC 59.637 63.158 13.56 0.00 37.86 5.25
623 1085 1.390383 CCATCTCTCTCGAGGCAGCA 61.390 60.000 13.56 0.00 37.86 4.41
624 1086 0.031043 CATCTCTCTCGAGGCAGCAG 59.969 60.000 13.56 1.80 37.86 4.24
642 1105 5.981915 GCAGCAGAAAAAGTCTCTGATTTTT 59.018 36.000 4.06 1.08 42.51 1.94
649 1112 5.854431 AAAGTCTCTGATTTTTCTCTCGC 57.146 39.130 0.00 0.00 0.00 5.03
650 1113 3.506810 AGTCTCTGATTTTTCTCTCGCG 58.493 45.455 0.00 0.00 0.00 5.87
651 1114 3.191581 AGTCTCTGATTTTTCTCTCGCGA 59.808 43.478 9.26 9.26 0.00 5.87
653 1116 4.031201 GTCTCTGATTTTTCTCTCGCGAAG 59.969 45.833 11.33 10.97 0.00 3.79
686 1151 3.815569 CTGCGAGAGATCGTCCGGC 62.816 68.421 0.00 0.00 35.26 6.13
721 1200 1.387539 GCTTCATCAGCCTTCCTTCC 58.612 55.000 0.00 0.00 43.65 3.46
722 1201 2.021208 GCTTCATCAGCCTTCCTTCCC 61.021 57.143 0.00 0.00 43.65 3.97
723 1202 1.563410 CTTCATCAGCCTTCCTTCCCT 59.437 52.381 0.00 0.00 0.00 4.20
724 1203 1.207791 TCATCAGCCTTCCTTCCCTC 58.792 55.000 0.00 0.00 0.00 4.30
725 1204 1.211456 CATCAGCCTTCCTTCCCTCT 58.789 55.000 0.00 0.00 0.00 3.69
789 1279 4.189188 CATGGCTGCCGCTGCTTC 62.189 66.667 20.06 6.84 38.71 3.86
790 1280 4.421515 ATGGCTGCCGCTGCTTCT 62.422 61.111 20.06 4.46 38.71 2.85
839 1353 2.597578 AACAACAATACCCACTCCCC 57.402 50.000 0.00 0.00 0.00 4.81
863 1377 1.139308 TGTACGTACCATTCGCCCG 59.861 57.895 22.43 0.00 0.00 6.13
961 1479 0.035036 TGTCCGTCGAGACTCTCTGT 59.965 55.000 12.88 0.00 37.66 3.41
1008 1541 3.735037 GACGCCGGAGATGGGTTCC 62.735 68.421 13.83 0.00 0.00 3.62
1029 1562 2.432628 GCGTCGGTCCACAAGGAG 60.433 66.667 0.00 0.00 46.92 3.69
1037 1570 1.228337 TCCACAAGGAGGACGTCGA 60.228 57.895 9.92 0.00 39.61 4.20
1172 1726 1.075450 GGACCCCTGACTCCGGTAT 60.075 63.158 0.00 0.00 0.00 2.73
1191 1745 1.803334 TGTACGGCGCTTCATCTTTT 58.197 45.000 6.90 0.00 0.00 2.27
1263 1817 3.736252 CAGTCGCGGGTTAGATTAATCTG 59.264 47.826 25.22 11.05 37.76 2.90
1264 1818 3.383825 AGTCGCGGGTTAGATTAATCTGT 59.616 43.478 25.22 5.42 37.76 3.41
1265 1819 4.581824 AGTCGCGGGTTAGATTAATCTGTA 59.418 41.667 25.22 12.06 37.76 2.74
1266 1820 5.068198 AGTCGCGGGTTAGATTAATCTGTAA 59.932 40.000 25.22 11.68 37.76 2.41
1267 1821 5.924825 GTCGCGGGTTAGATTAATCTGTAAT 59.075 40.000 25.22 4.00 37.76 1.89
1268 1822 6.089150 GTCGCGGGTTAGATTAATCTGTAATC 59.911 42.308 25.22 13.91 37.76 1.75
1269 1823 6.015688 TCGCGGGTTAGATTAATCTGTAATCT 60.016 38.462 25.22 12.04 44.02 2.40
1272 1826 9.485206 GCGGGTTAGATTAATCTGTAATCTTTA 57.515 33.333 25.22 1.76 42.39 1.85
1326 1887 6.258068 GGTCGGTTCTTTATCTTTATGTGGAG 59.742 42.308 0.00 0.00 0.00 3.86
1327 1888 6.258068 GTCGGTTCTTTATCTTTATGTGGAGG 59.742 42.308 0.00 0.00 0.00 4.30
1328 1889 6.155565 TCGGTTCTTTATCTTTATGTGGAGGA 59.844 38.462 0.00 0.00 0.00 3.71
1329 1890 6.821665 CGGTTCTTTATCTTTATGTGGAGGAA 59.178 38.462 0.00 0.00 0.00 3.36
1330 1891 7.335924 CGGTTCTTTATCTTTATGTGGAGGAAA 59.664 37.037 0.00 0.00 0.00 3.13
1332 1893 8.678199 GTTCTTTATCTTTATGTGGAGGAAAGG 58.322 37.037 0.00 0.00 32.22 3.11
1333 1894 6.828785 TCTTTATCTTTATGTGGAGGAAAGGC 59.171 38.462 0.00 0.00 32.22 4.35
1334 1895 4.870021 ATCTTTATGTGGAGGAAAGGCT 57.130 40.909 0.00 0.00 32.22 4.58
1439 2004 5.646793 GGTTCTGGTAATCCCTTCTGTAAAC 59.353 44.000 0.00 0.00 0.00 2.01
1440 2005 6.235664 GTTCTGGTAATCCCTTCTGTAAACA 58.764 40.000 0.00 0.00 0.00 2.83
1441 2006 6.442541 TCTGGTAATCCCTTCTGTAAACAA 57.557 37.500 0.00 0.00 0.00 2.83
1442 2007 7.027874 TCTGGTAATCCCTTCTGTAAACAAT 57.972 36.000 0.00 0.00 0.00 2.71
1503 2071 6.416455 GTGATGATCTATTCGTCTCAACAGAC 59.584 42.308 0.00 0.00 45.19 3.51
1651 2250 1.407979 CTTGCCCAAATCAGGATGCTC 59.592 52.381 0.00 0.00 34.76 4.26
1653 2252 1.030457 GCCCAAATCAGGATGCTCTG 58.970 55.000 0.00 0.00 34.76 3.35
1654 2253 1.684248 GCCCAAATCAGGATGCTCTGT 60.684 52.381 0.00 0.00 36.25 3.41
1700 2299 6.067263 TCTGGTTCCTTTGTTATTTTCGTG 57.933 37.500 0.00 0.00 0.00 4.35
1754 2353 5.448360 CCTTAGTTGCAGCAGCTTAGAATTC 60.448 44.000 22.59 0.00 42.74 2.17
1762 2361 5.163519 GCAGCAGCTTAGAATTCCCAATTTA 60.164 40.000 0.65 0.00 37.91 1.40
1775 2374 9.764363 GAATTCCCAATTTAAAGTTTCAGTCTT 57.236 29.630 0.00 0.00 0.00 3.01
1776 2375 9.546428 AATTCCCAATTTAAAGTTTCAGTCTTG 57.454 29.630 0.00 0.00 0.00 3.02
1792 2393 1.964223 TCTTGTGTGTCTCTCCCTGTC 59.036 52.381 0.00 0.00 0.00 3.51
1807 2408 0.745845 CTGTCGCCCCAAATCAGGAG 60.746 60.000 0.00 0.00 0.00 3.69
1816 2417 1.131883 CCAAATCAGGAGCTTGCTTCG 59.868 52.381 0.00 0.00 0.00 3.79
1818 2419 2.191128 AATCAGGAGCTTGCTTCGTT 57.809 45.000 0.00 0.00 0.00 3.85
1822 2423 0.947244 AGGAGCTTGCTTCGTTGTTG 59.053 50.000 0.00 0.00 0.00 3.33
1843 2444 4.609301 TGCTGGGTTTTGGCTCTAATATT 58.391 39.130 0.00 0.00 0.00 1.28
1848 2449 5.483583 TGGGTTTTGGCTCTAATATTGCTTT 59.516 36.000 0.00 0.00 0.00 3.51
1890 2491 4.880120 GCCTTGACTTCTGAATCATCATCA 59.120 41.667 0.00 0.00 34.37 3.07
1914 2515 1.103398 AGTGTGCAAGCCAGTGGTTC 61.103 55.000 11.74 0.00 0.00 3.62
1923 2524 1.079819 CCAGTGGTTCTGCGACGAT 60.080 57.895 0.00 0.00 42.38 3.73
2006 2608 6.759272 TCTTTTAAGAAGAGCAGAGCTAACA 58.241 36.000 0.00 0.00 33.13 2.41
2074 2676 1.203994 CCGTGGTTAGATTCCGACTGT 59.796 52.381 0.00 0.00 0.00 3.55
2092 2694 1.540267 TGTGAGGACGACTTCTACAGC 59.460 52.381 0.00 0.00 0.00 4.40
2134 2744 9.046296 CACAGAAATAGACACATTTATCTACCC 57.954 37.037 0.00 0.00 30.34 3.69
2160 2770 7.816995 CACTGTATAAGAGGATTCCATTCTAGC 59.183 40.741 5.29 0.00 0.00 3.42
2164 2774 2.298729 AGAGGATTCCATTCTAGCGCTC 59.701 50.000 16.34 0.00 0.00 5.03
2428 3038 1.226746 CGAGGGGCTTATTTTAGGCG 58.773 55.000 0.00 0.00 41.33 5.52
2451 3062 4.792704 GCCGATTGCTTCTTGAGACAAAAA 60.793 41.667 0.00 0.00 36.87 1.94
2676 3291 7.343057 TCTTCAACTACCAGATCATGTGATAGT 59.657 37.037 0.00 0.00 34.37 2.12
2681 3296 7.851228 ACTACCAGATCATGTGATAGTTTCAA 58.149 34.615 0.00 0.00 35.70 2.69
2717 3332 4.457603 TGCAACACGCTTAACCATAAGATT 59.542 37.500 0.00 0.00 40.90 2.40
2719 3334 5.861787 GCAACACGCTTAACCATAAGATTTT 59.138 36.000 0.00 0.00 40.90 1.82
2721 3336 5.864986 ACACGCTTAACCATAAGATTTTCG 58.135 37.500 0.00 0.00 40.90 3.46
2722 3337 5.640357 ACACGCTTAACCATAAGATTTTCGA 59.360 36.000 0.00 0.00 40.90 3.71
2723 3338 6.315393 ACACGCTTAACCATAAGATTTTCGAT 59.685 34.615 0.00 0.00 40.90 3.59
2724 3339 7.493320 ACACGCTTAACCATAAGATTTTCGATA 59.507 33.333 0.00 0.00 40.90 2.92
2725 3340 8.332464 CACGCTTAACCATAAGATTTTCGATAA 58.668 33.333 0.00 0.00 40.90 1.75
2726 3341 8.885722 ACGCTTAACCATAAGATTTTCGATAAA 58.114 29.630 0.00 0.00 40.90 1.40
2727 3342 9.370126 CGCTTAACCATAAGATTTTCGATAAAG 57.630 33.333 0.00 0.00 40.90 1.85
2728 3343 9.170584 GCTTAACCATAAGATTTTCGATAAAGC 57.829 33.333 0.00 0.00 40.90 3.51
2729 3344 9.370126 CTTAACCATAAGATTTTCGATAAAGCG 57.630 33.333 0.00 0.00 40.90 4.68
2730 3345 5.748592 ACCATAAGATTTTCGATAAAGCGC 58.251 37.500 0.00 0.00 0.00 5.92
2731 3346 5.527582 ACCATAAGATTTTCGATAAAGCGCT 59.472 36.000 2.64 2.64 0.00 5.92
2732 3347 6.038271 ACCATAAGATTTTCGATAAAGCGCTT 59.962 34.615 18.98 18.98 0.00 4.68
2733 3348 7.225931 ACCATAAGATTTTCGATAAAGCGCTTA 59.774 33.333 25.33 12.24 0.00 3.09
2734 3349 8.067784 CCATAAGATTTTCGATAAAGCGCTTAA 58.932 33.333 25.33 12.54 0.00 1.85
2735 3350 8.883168 CATAAGATTTTCGATAAAGCGCTTAAC 58.117 33.333 25.33 15.99 0.00 2.01
2736 3351 5.807344 AGATTTTCGATAAAGCGCTTAACC 58.193 37.500 25.33 13.72 0.00 2.85
2737 3352 5.353123 AGATTTTCGATAAAGCGCTTAACCA 59.647 36.000 25.33 9.58 0.00 3.67
2738 3353 5.554822 TTTTCGATAAAGCGCTTAACCAT 57.445 34.783 25.33 14.10 0.00 3.55
2739 3354 6.665474 TTTTCGATAAAGCGCTTAACCATA 57.335 33.333 25.33 12.20 0.00 2.74
2740 3355 6.665474 TTTCGATAAAGCGCTTAACCATAA 57.335 33.333 25.33 11.38 0.00 1.90
2741 3356 5.900339 TCGATAAAGCGCTTAACCATAAG 57.100 39.130 25.33 10.13 41.27 1.73
2742 3357 5.593968 TCGATAAAGCGCTTAACCATAAGA 58.406 37.500 25.33 12.15 40.90 2.10
2743 3358 6.220930 TCGATAAAGCGCTTAACCATAAGAT 58.779 36.000 25.33 5.94 40.90 2.40
2744 3359 7.372714 TCGATAAAGCGCTTAACCATAAGATA 58.627 34.615 25.33 8.23 40.90 1.98
2745 3360 8.033038 TCGATAAAGCGCTTAACCATAAGATAT 58.967 33.333 25.33 12.94 40.90 1.63
2746 3361 8.110612 CGATAAAGCGCTTAACCATAAGATATG 58.889 37.037 25.33 5.00 40.90 1.78
2747 3362 8.848474 ATAAAGCGCTTAACCATAAGATATGT 57.152 30.769 25.33 3.94 40.90 2.29
2915 3530 0.179000 AATTAGCCGACCTCCTGCAG 59.821 55.000 6.78 6.78 0.00 4.41
3035 3653 0.394192 CAGCTGGGAAGTCTGTGTCA 59.606 55.000 5.57 0.00 0.00 3.58
3256 3881 6.822676 AGCTGTATCTACTACGATATACCACC 59.177 42.308 0.00 0.00 32.61 4.61
3332 3958 4.766970 GCGCTGAGAGTGCCATAT 57.233 55.556 0.00 0.00 45.45 1.78
3333 3959 3.894257 GCGCTGAGAGTGCCATATA 57.106 52.632 0.00 0.00 45.45 0.86
3334 3960 2.376808 GCGCTGAGAGTGCCATATAT 57.623 50.000 0.00 0.00 45.45 0.86
3335 3961 3.510388 GCGCTGAGAGTGCCATATATA 57.490 47.619 0.00 0.00 45.45 0.86
3336 3962 4.052159 GCGCTGAGAGTGCCATATATAT 57.948 45.455 0.00 0.00 45.45 0.86
3337 3963 5.188327 GCGCTGAGAGTGCCATATATATA 57.812 43.478 0.00 0.00 45.45 0.86
3338 3964 5.777802 GCGCTGAGAGTGCCATATATATAT 58.222 41.667 0.00 0.00 45.45 0.86
3339 3965 6.914259 GCGCTGAGAGTGCCATATATATATA 58.086 40.000 0.00 4.92 45.45 0.86
3340 3966 7.542890 GCGCTGAGAGTGCCATATATATATAT 58.457 38.462 9.12 9.12 45.45 0.86
3341 3967 8.678199 GCGCTGAGAGTGCCATATATATATATA 58.322 37.037 13.72 13.60 45.45 0.86
3480 4124 1.677052 CTGAACCCTACCTAGCTCGAC 59.323 57.143 0.00 0.00 0.00 4.20
3507 4151 2.292267 CTTCGGCCTGTGCATATCTTT 58.708 47.619 0.00 0.00 40.13 2.52
3622 4271 6.688637 CATGATTGATGCCTCTGTTTAGAA 57.311 37.500 0.00 0.00 31.21 2.10
3623 4272 7.273320 CATGATTGATGCCTCTGTTTAGAAT 57.727 36.000 0.00 0.00 31.21 2.40
3625 4274 8.843262 CATGATTGATGCCTCTGTTTAGAATTA 58.157 33.333 0.00 0.00 31.21 1.40
3626 4275 8.213518 TGATTGATGCCTCTGTTTAGAATTAC 57.786 34.615 0.00 0.00 31.21 1.89
3627 4276 8.049117 TGATTGATGCCTCTGTTTAGAATTACT 58.951 33.333 0.00 0.00 31.21 2.24
3628 4277 8.814038 ATTGATGCCTCTGTTTAGAATTACTT 57.186 30.769 0.00 0.00 31.21 2.24
3629 4278 7.615582 TGATGCCTCTGTTTAGAATTACTTG 57.384 36.000 0.00 0.00 31.21 3.16
3632 4281 5.637810 TGCCTCTGTTTAGAATTACTTGTCG 59.362 40.000 0.00 0.00 31.21 4.35
3633 4282 5.446073 GCCTCTGTTTAGAATTACTTGTCGC 60.446 44.000 0.00 0.00 31.21 5.19
3634 4283 5.637810 CCTCTGTTTAGAATTACTTGTCGCA 59.362 40.000 0.00 0.00 31.21 5.10
3635 4284 6.183360 CCTCTGTTTAGAATTACTTGTCGCAG 60.183 42.308 0.00 0.00 31.21 5.18
3636 4285 6.452242 TCTGTTTAGAATTACTTGTCGCAGA 58.548 36.000 0.00 0.00 0.00 4.26
3637 4286 6.926826 TCTGTTTAGAATTACTTGTCGCAGAA 59.073 34.615 0.00 0.00 39.69 3.02
3638 4287 7.439955 TCTGTTTAGAATTACTTGTCGCAGAAA 59.560 33.333 0.00 0.00 39.69 2.52
3639 4288 8.094798 TGTTTAGAATTACTTGTCGCAGAAAT 57.905 30.769 0.00 0.00 39.69 2.17
3640 4289 8.015087 TGTTTAGAATTACTTGTCGCAGAAATG 58.985 33.333 0.00 0.00 39.69 2.32
3641 4290 5.551760 AGAATTACTTGTCGCAGAAATGG 57.448 39.130 0.00 0.00 39.69 3.16
3642 4291 5.245531 AGAATTACTTGTCGCAGAAATGGA 58.754 37.500 0.00 0.00 39.69 3.41
3643 4292 5.882557 AGAATTACTTGTCGCAGAAATGGAT 59.117 36.000 0.00 0.00 39.69 3.41
3644 4293 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
3645 4294 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
3646 4295 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
3647 4296 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
3648 4297 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
3649 4298 3.466836 TGTCGCAGAAATGGATGTATCC 58.533 45.455 3.91 3.91 43.31 2.59
3685 4334 9.967346 TTAGTTCTAGATACATCCATTTTCGAG 57.033 33.333 0.00 0.00 0.00 4.04
3686 4335 8.239038 AGTTCTAGATACATCCATTTTCGAGA 57.761 34.615 0.00 0.00 0.00 4.04
3687 4336 8.865090 AGTTCTAGATACATCCATTTTCGAGAT 58.135 33.333 0.00 0.00 0.00 2.75
3698 4347 9.586150 CATCCATTTTCGAGATAAGTAATTTCG 57.414 33.333 0.00 0.00 42.12 3.46
3699 4348 8.936070 TCCATTTTCGAGATAAGTAATTTCGA 57.064 30.769 0.00 0.00 46.19 3.71
3704 4353 6.122850 TCGAGATAAGTAATTTCGAACGGA 57.877 37.500 0.00 0.00 45.25 4.69
3705 4354 6.197276 TCGAGATAAGTAATTTCGAACGGAG 58.803 40.000 0.00 0.00 45.25 4.63
3706 4355 5.398711 CGAGATAAGTAATTTCGAACGGAGG 59.601 44.000 0.00 0.00 43.12 4.30
3707 4356 5.598769 AGATAAGTAATTTCGAACGGAGGG 58.401 41.667 0.00 0.00 0.00 4.30
3708 4357 3.967332 AAGTAATTTCGAACGGAGGGA 57.033 42.857 0.00 0.00 0.00 4.20
3709 4358 3.521947 AGTAATTTCGAACGGAGGGAG 57.478 47.619 0.00 0.00 0.00 4.30
3750 4399 0.250467 CTCCAGGGGTTCACTGTGTG 60.250 60.000 7.79 0.00 34.16 3.82
3751 4400 0.986019 TCCAGGGGTTCACTGTGTGT 60.986 55.000 7.79 0.00 34.79 3.72
3791 4451 0.994247 ACTTGATGATGGGTGCTGGA 59.006 50.000 0.00 0.00 0.00 3.86
3808 4468 0.804989 GGACAAGTGGATTTCGCCTG 59.195 55.000 0.00 0.00 0.00 4.85
3973 4634 0.027979 CGCGTTAACTGCCCATGATG 59.972 55.000 14.03 0.00 0.00 3.07
4002 4663 1.412079 TCATGCACCACTGCCTTTTT 58.588 45.000 0.00 0.00 43.51 1.94
4035 4696 0.675083 TGCACCACTGCCTTTTGATG 59.325 50.000 0.00 0.00 43.51 3.07
4045 4706 2.288948 TGCCTTTTGATGTGCATGGAAC 60.289 45.455 0.00 0.00 0.00 3.62
4070 4731 4.957759 ACGTTGGTCTTATATGCAAACC 57.042 40.909 0.00 0.00 0.00 3.27
4090 4751 2.073252 TCTGACCAGAGAGTGTGTGT 57.927 50.000 0.00 0.00 32.82 3.72
4091 4752 1.683385 TCTGACCAGAGAGTGTGTGTG 59.317 52.381 0.00 0.00 32.82 3.82
4092 4753 1.683385 CTGACCAGAGAGTGTGTGTGA 59.317 52.381 0.00 0.00 0.00 3.58
4093 4754 1.683385 TGACCAGAGAGTGTGTGTGAG 59.317 52.381 0.00 0.00 0.00 3.51
4094 4755 1.957177 GACCAGAGAGTGTGTGTGAGA 59.043 52.381 0.00 0.00 0.00 3.27
4203 4864 4.252073 CATCTTTCAGAGGTTCCAGTGAG 58.748 47.826 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.611673 CCACCGAGCTGGATTCAAACT 60.612 52.381 8.91 0.00 42.00 2.66
1 2 0.804989 CCACCGAGCTGGATTCAAAC 59.195 55.000 8.91 0.00 42.00 2.93
2 3 0.322456 CCCACCGAGCTGGATTCAAA 60.322 55.000 8.91 0.00 42.00 2.69
3 4 1.198094 TCCCACCGAGCTGGATTCAA 61.198 55.000 8.91 0.00 42.00 2.69
4 5 1.198094 TTCCCACCGAGCTGGATTCA 61.198 55.000 8.91 0.00 42.00 2.57
5 6 0.035439 TTTCCCACCGAGCTGGATTC 60.035 55.000 8.91 0.00 42.00 2.52
6 7 0.625849 ATTTCCCACCGAGCTGGATT 59.374 50.000 8.91 0.00 42.00 3.01
7 8 0.625849 AATTTCCCACCGAGCTGGAT 59.374 50.000 8.91 0.00 42.00 3.41
8 9 0.035439 GAATTTCCCACCGAGCTGGA 60.035 55.000 8.91 0.00 42.00 3.86
9 10 0.035056 AGAATTTCCCACCGAGCTGG 60.035 55.000 0.00 0.00 46.41 4.85
10 11 1.470098 CAAGAATTTCCCACCGAGCTG 59.530 52.381 0.00 0.00 0.00 4.24
11 12 1.826385 CAAGAATTTCCCACCGAGCT 58.174 50.000 0.00 0.00 0.00 4.09
12 13 0.171231 GCAAGAATTTCCCACCGAGC 59.829 55.000 0.00 0.00 0.00 5.03
13 14 0.447801 CGCAAGAATTTCCCACCGAG 59.552 55.000 0.00 0.00 43.02 4.63
14 15 1.582610 GCGCAAGAATTTCCCACCGA 61.583 55.000 0.30 0.00 43.02 4.69
15 16 1.154035 GCGCAAGAATTTCCCACCG 60.154 57.895 0.30 0.00 43.02 4.94
16 17 1.459450 TAGCGCAAGAATTTCCCACC 58.541 50.000 11.47 0.00 43.02 4.61
17 18 3.782889 AATAGCGCAAGAATTTCCCAC 57.217 42.857 11.47 0.00 43.02 4.61
18 19 3.509575 ACAAATAGCGCAAGAATTTCCCA 59.490 39.130 11.47 0.00 43.02 4.37
19 20 4.105486 GACAAATAGCGCAAGAATTTCCC 58.895 43.478 11.47 0.96 43.02 3.97
20 21 4.105486 GGACAAATAGCGCAAGAATTTCC 58.895 43.478 11.47 2.90 43.02 3.13
21 22 4.105486 GGGACAAATAGCGCAAGAATTTC 58.895 43.478 11.47 0.00 43.02 2.17
22 23 3.763897 AGGGACAAATAGCGCAAGAATTT 59.236 39.130 11.47 7.18 43.02 1.82
23 24 3.356290 AGGGACAAATAGCGCAAGAATT 58.644 40.909 11.47 0.31 43.02 2.17
24 25 2.945668 GAGGGACAAATAGCGCAAGAAT 59.054 45.455 11.47 0.00 43.02 2.40
25 26 2.356135 GAGGGACAAATAGCGCAAGAA 58.644 47.619 11.47 0.00 43.02 2.52
26 27 1.406887 GGAGGGACAAATAGCGCAAGA 60.407 52.381 11.47 0.00 43.02 3.02
27 28 1.017387 GGAGGGACAAATAGCGCAAG 58.983 55.000 11.47 0.00 43.44 4.01
28 29 0.393808 GGGAGGGACAAATAGCGCAA 60.394 55.000 11.47 0.00 0.00 4.85
29 30 1.223487 GGGAGGGACAAATAGCGCA 59.777 57.895 11.47 0.00 0.00 6.09
30 31 0.815615 CAGGGAGGGACAAATAGCGC 60.816 60.000 0.00 0.00 0.00 5.92
31 32 0.815615 GCAGGGAGGGACAAATAGCG 60.816 60.000 0.00 0.00 0.00 4.26
32 33 0.548510 AGCAGGGAGGGACAAATAGC 59.451 55.000 0.00 0.00 0.00 2.97
33 34 1.748591 GCAGCAGGGAGGGACAAATAG 60.749 57.143 0.00 0.00 0.00 1.73
34 35 0.255890 GCAGCAGGGAGGGACAAATA 59.744 55.000 0.00 0.00 0.00 1.40
35 36 1.000396 GCAGCAGGGAGGGACAAAT 60.000 57.895 0.00 0.00 0.00 2.32
36 37 2.156098 AGCAGCAGGGAGGGACAAA 61.156 57.895 0.00 0.00 0.00 2.83
37 38 2.530151 AGCAGCAGGGAGGGACAA 60.530 61.111 0.00 0.00 0.00 3.18
38 39 3.324930 CAGCAGCAGGGAGGGACA 61.325 66.667 0.00 0.00 0.00 4.02
39 40 2.596851 TTCAGCAGCAGGGAGGGAC 61.597 63.158 0.00 0.00 0.00 4.46
40 41 2.203983 TTCAGCAGCAGGGAGGGA 60.204 61.111 0.00 0.00 0.00 4.20
41 42 2.045536 GTTCAGCAGCAGGGAGGG 60.046 66.667 0.00 0.00 0.00 4.30
42 43 2.045536 GGTTCAGCAGCAGGGAGG 60.046 66.667 0.00 0.00 0.00 4.30
43 44 2.435586 CGGTTCAGCAGCAGGGAG 60.436 66.667 0.00 0.00 0.00 4.30
44 45 4.020617 CCGGTTCAGCAGCAGGGA 62.021 66.667 0.00 0.00 0.00 4.20
45 46 2.826777 AATCCGGTTCAGCAGCAGGG 62.827 60.000 0.00 0.00 0.00 4.45
46 47 1.377725 AATCCGGTTCAGCAGCAGG 60.378 57.895 0.00 0.00 0.00 4.85
47 48 0.674581 TCAATCCGGTTCAGCAGCAG 60.675 55.000 0.00 0.00 0.00 4.24
48 49 0.250684 TTCAATCCGGTTCAGCAGCA 60.251 50.000 0.00 0.00 0.00 4.41
49 50 0.449388 CTTCAATCCGGTTCAGCAGC 59.551 55.000 0.00 0.00 0.00 5.25
50 51 2.099141 TCTTCAATCCGGTTCAGCAG 57.901 50.000 0.00 0.00 0.00 4.24
51 52 2.559698 TTCTTCAATCCGGTTCAGCA 57.440 45.000 0.00 0.00 0.00 4.41
52 53 3.004315 TGTTTTCTTCAATCCGGTTCAGC 59.996 43.478 0.00 0.00 0.00 4.26
53 54 4.829064 TGTTTTCTTCAATCCGGTTCAG 57.171 40.909 0.00 0.00 0.00 3.02
54 55 4.642885 AGTTGTTTTCTTCAATCCGGTTCA 59.357 37.500 0.00 0.00 0.00 3.18
55 56 5.183014 AGTTGTTTTCTTCAATCCGGTTC 57.817 39.130 0.00 0.00 0.00 3.62
56 57 4.261031 CGAGTTGTTTTCTTCAATCCGGTT 60.261 41.667 0.00 0.00 0.00 4.44
57 58 3.250040 CGAGTTGTTTTCTTCAATCCGGT 59.750 43.478 0.00 0.00 0.00 5.28
58 59 3.250040 ACGAGTTGTTTTCTTCAATCCGG 59.750 43.478 0.00 0.00 31.92 5.14
59 60 4.211389 CACGAGTTGTTTTCTTCAATCCG 58.789 43.478 0.00 0.00 0.00 4.18
60 61 4.036380 ACCACGAGTTGTTTTCTTCAATCC 59.964 41.667 0.00 0.00 0.00 3.01
61 62 4.970003 CACCACGAGTTGTTTTCTTCAATC 59.030 41.667 0.00 0.00 0.00 2.67
62 63 4.733523 GCACCACGAGTTGTTTTCTTCAAT 60.734 41.667 0.00 0.00 0.00 2.57
63 64 3.426963 GCACCACGAGTTGTTTTCTTCAA 60.427 43.478 0.00 0.00 0.00 2.69
64 65 2.096819 GCACCACGAGTTGTTTTCTTCA 59.903 45.455 0.00 0.00 0.00 3.02
65 66 2.540973 GGCACCACGAGTTGTTTTCTTC 60.541 50.000 0.00 0.00 0.00 2.87
66 67 1.404035 GGCACCACGAGTTGTTTTCTT 59.596 47.619 0.00 0.00 0.00 2.52
67 68 1.021968 GGCACCACGAGTTGTTTTCT 58.978 50.000 0.00 0.00 0.00 2.52
68 69 0.736053 TGGCACCACGAGTTGTTTTC 59.264 50.000 0.00 0.00 0.00 2.29
69 70 1.066908 CATGGCACCACGAGTTGTTTT 59.933 47.619 0.00 0.00 0.00 2.43
70 71 0.667993 CATGGCACCACGAGTTGTTT 59.332 50.000 0.00 0.00 0.00 2.83
71 72 1.795170 GCATGGCACCACGAGTTGTT 61.795 55.000 0.00 0.00 0.00 2.83
72 73 2.260869 GCATGGCACCACGAGTTGT 61.261 57.895 0.00 0.00 0.00 3.32
73 74 2.562912 GCATGGCACCACGAGTTG 59.437 61.111 0.00 0.00 0.00 3.16
74 75 2.672996 GGCATGGCACCACGAGTT 60.673 61.111 15.47 0.00 0.00 3.01
75 76 4.722700 GGGCATGGCACCACGAGT 62.723 66.667 22.06 0.00 0.00 4.18
92 93 4.924187 TTGGGGTTGGGCCGTTGG 62.924 66.667 0.00 0.00 38.44 3.77
93 94 3.302344 CTTGGGGTTGGGCCGTTG 61.302 66.667 0.00 0.00 38.44 4.10
94 95 3.503839 TCTTGGGGTTGGGCCGTT 61.504 61.111 0.00 0.00 38.44 4.44
95 96 3.966543 CTCTTGGGGTTGGGCCGT 61.967 66.667 0.00 0.00 38.44 5.68
98 99 4.344865 TCGCTCTTGGGGTTGGGC 62.345 66.667 0.00 0.00 0.00 5.36
99 100 2.045926 CTCGCTCTTGGGGTTGGG 60.046 66.667 0.00 0.00 0.00 4.12
100 101 1.376037 GACTCGCTCTTGGGGTTGG 60.376 63.158 0.00 0.00 0.00 3.77
101 102 0.951040 GTGACTCGCTCTTGGGGTTG 60.951 60.000 0.00 0.00 0.00 3.77
102 103 1.371558 GTGACTCGCTCTTGGGGTT 59.628 57.895 0.00 0.00 0.00 4.11
103 104 2.932234 CGTGACTCGCTCTTGGGGT 61.932 63.158 0.00 0.00 0.00 4.95
104 105 2.125912 CGTGACTCGCTCTTGGGG 60.126 66.667 0.00 0.00 0.00 4.96
114 115 2.161486 GGCGAGACATGCGTGACTC 61.161 63.158 23.23 23.23 41.65 3.36
115 116 2.125912 GGCGAGACATGCGTGACT 60.126 61.111 14.17 12.33 33.06 3.41
116 117 2.027073 TTGGCGAGACATGCGTGAC 61.027 57.895 14.17 6.60 0.00 3.67
117 118 2.027073 GTTGGCGAGACATGCGTGA 61.027 57.895 14.17 0.00 0.00 4.35
118 119 2.316867 TGTTGGCGAGACATGCGTG 61.317 57.895 3.82 3.82 0.00 5.34
119 120 2.030412 TGTTGGCGAGACATGCGT 59.970 55.556 0.00 0.00 0.00 5.24
120 121 1.840630 TTGTGTTGGCGAGACATGCG 61.841 55.000 5.44 0.00 30.81 4.73
121 122 0.385974 GTTGTGTTGGCGAGACATGC 60.386 55.000 5.44 0.00 30.81 4.06
122 123 0.943673 TGTTGTGTTGGCGAGACATG 59.056 50.000 5.44 0.00 30.81 3.21
123 124 0.944386 GTGTTGTGTTGGCGAGACAT 59.056 50.000 5.44 0.00 30.81 3.06
124 125 0.107897 AGTGTTGTGTTGGCGAGACA 60.108 50.000 0.00 0.00 0.00 3.41
125 126 0.582005 GAGTGTTGTGTTGGCGAGAC 59.418 55.000 0.00 0.00 0.00 3.36
126 127 0.464036 AGAGTGTTGTGTTGGCGAGA 59.536 50.000 0.00 0.00 0.00 4.04
127 128 0.861837 GAGAGTGTTGTGTTGGCGAG 59.138 55.000 0.00 0.00 0.00 5.03
128 129 0.531974 GGAGAGTGTTGTGTTGGCGA 60.532 55.000 0.00 0.00 0.00 5.54
129 130 1.507141 GGGAGAGTGTTGTGTTGGCG 61.507 60.000 0.00 0.00 0.00 5.69
130 131 1.507141 CGGGAGAGTGTTGTGTTGGC 61.507 60.000 0.00 0.00 0.00 4.52
131 132 1.507141 GCGGGAGAGTGTTGTGTTGG 61.507 60.000 0.00 0.00 0.00 3.77
132 133 1.507141 GGCGGGAGAGTGTTGTGTTG 61.507 60.000 0.00 0.00 0.00 3.33
133 134 1.227853 GGCGGGAGAGTGTTGTGTT 60.228 57.895 0.00 0.00 0.00 3.32
134 135 2.426023 GGCGGGAGAGTGTTGTGT 59.574 61.111 0.00 0.00 0.00 3.72
135 136 2.358737 GGGCGGGAGAGTGTTGTG 60.359 66.667 0.00 0.00 0.00 3.33
136 137 2.526873 AGGGCGGGAGAGTGTTGT 60.527 61.111 0.00 0.00 0.00 3.32
137 138 2.046892 CAGGGCGGGAGAGTGTTG 60.047 66.667 0.00 0.00 0.00 3.33
138 139 4.021925 GCAGGGCGGGAGAGTGTT 62.022 66.667 0.00 0.00 0.00 3.32
140 141 3.790437 ATGCAGGGCGGGAGAGTG 61.790 66.667 0.00 0.00 0.00 3.51
141 142 3.790437 CATGCAGGGCGGGAGAGT 61.790 66.667 0.00 0.00 0.00 3.24
150 151 4.720902 TGGACACGGCATGCAGGG 62.721 66.667 19.08 19.08 0.00 4.45
151 152 2.203972 CTTTGGACACGGCATGCAGG 62.204 60.000 21.96 14.09 0.00 4.85
152 153 1.210931 CTTTGGACACGGCATGCAG 59.789 57.895 21.36 18.97 0.00 4.41
153 154 2.918345 GCTTTGGACACGGCATGCA 61.918 57.895 21.36 0.00 0.00 3.96
154 155 2.126346 GCTTTGGACACGGCATGC 60.126 61.111 9.90 9.90 0.00 4.06
155 156 1.597797 ATGGCTTTGGACACGGCATG 61.598 55.000 8.41 0.00 41.58 4.06
156 157 0.034574 TATGGCTTTGGACACGGCAT 60.035 50.000 12.29 12.29 44.63 4.40
157 158 0.034574 ATATGGCTTTGGACACGGCA 60.035 50.000 0.00 0.00 37.63 5.69
158 159 0.663153 GATATGGCTTTGGACACGGC 59.337 55.000 0.00 0.00 30.68 5.68
159 160 2.036958 TGATATGGCTTTGGACACGG 57.963 50.000 0.00 0.00 30.68 4.94
160 161 3.748048 CCTATGATATGGCTTTGGACACG 59.252 47.826 0.00 0.00 30.68 4.49
161 162 4.516698 CACCTATGATATGGCTTTGGACAC 59.483 45.833 0.00 0.00 30.68 3.67
162 163 4.446167 CCACCTATGATATGGCTTTGGACA 60.446 45.833 0.00 0.00 33.53 4.02
163 164 4.074970 CCACCTATGATATGGCTTTGGAC 58.925 47.826 0.00 0.00 0.00 4.02
164 165 3.980022 TCCACCTATGATATGGCTTTGGA 59.020 43.478 0.00 0.00 33.20 3.53
165 166 4.074970 GTCCACCTATGATATGGCTTTGG 58.925 47.826 0.00 0.00 33.20 3.28
166 167 4.717877 TGTCCACCTATGATATGGCTTTG 58.282 43.478 0.00 0.00 33.20 2.77
167 168 5.319453 CATGTCCACCTATGATATGGCTTT 58.681 41.667 0.00 0.00 33.20 3.51
168 169 4.263639 CCATGTCCACCTATGATATGGCTT 60.264 45.833 3.58 0.00 42.24 4.35
169 170 3.265221 CCATGTCCACCTATGATATGGCT 59.735 47.826 3.58 0.00 42.24 4.75
170 171 3.614092 CCATGTCCACCTATGATATGGC 58.386 50.000 3.58 0.00 42.24 4.40
207 208 1.966451 GGAACAGGTTGGAGTGCGG 60.966 63.158 0.00 0.00 0.00 5.69
230 232 0.313672 TTGACATTTTGGAGCGGCAC 59.686 50.000 1.45 0.00 0.00 5.01
231 233 1.000385 CTTTGACATTTTGGAGCGGCA 60.000 47.619 1.45 0.00 0.00 5.69
232 234 1.000274 ACTTTGACATTTTGGAGCGGC 60.000 47.619 0.00 0.00 0.00 6.53
233 235 2.554032 AGACTTTGACATTTTGGAGCGG 59.446 45.455 0.00 0.00 0.00 5.52
235 237 3.814945 CGAGACTTTGACATTTTGGAGC 58.185 45.455 0.00 0.00 0.00 4.70
236 238 3.365364 GGCGAGACTTTGACATTTTGGAG 60.365 47.826 0.00 0.00 0.00 3.86
284 308 7.672122 TCCGTAGTGCCTATCTATCTATCTA 57.328 40.000 0.00 0.00 0.00 1.98
288 312 8.418597 AAAAATCCGTAGTGCCTATCTATCTA 57.581 34.615 0.00 0.00 0.00 1.98
314 338 4.451900 AGAGAAAGCGAGGTTGAGAAAAA 58.548 39.130 0.00 0.00 0.00 1.94
315 339 4.058817 GAGAGAAAGCGAGGTTGAGAAAA 58.941 43.478 0.00 0.00 0.00 2.29
316 340 3.654414 GAGAGAAAGCGAGGTTGAGAAA 58.346 45.455 0.00 0.00 0.00 2.52
317 341 2.351835 CGAGAGAAAGCGAGGTTGAGAA 60.352 50.000 0.00 0.00 0.00 2.87
318 342 1.200252 CGAGAGAAAGCGAGGTTGAGA 59.800 52.381 0.00 0.00 0.00 3.27
338 736 0.597898 GAGGAGCGGTTAGGCGATTC 60.598 60.000 0.00 0.00 38.18 2.52
369 767 6.872020 ACGAGAAATCGGAGATGTTTAGAAAA 59.128 34.615 2.46 0.00 45.12 2.29
372 770 5.124936 TGACGAGAAATCGGAGATGTTTAGA 59.875 40.000 2.46 0.00 45.12 2.10
374 772 5.100259 GTGACGAGAAATCGGAGATGTTTA 58.900 41.667 2.46 0.00 45.12 2.01
381 779 3.217599 TCTTGTGACGAGAAATCGGAG 57.782 47.619 0.00 0.00 37.45 4.63
388 786 3.978687 GTCTTCCTTCTTGTGACGAGAA 58.021 45.455 14.21 14.21 0.00 2.87
399 797 1.269621 CCAACGTGACGTCTTCCTTCT 60.270 52.381 12.37 0.00 39.99 2.85
403 801 1.593209 TGCCAACGTGACGTCTTCC 60.593 57.895 12.37 0.97 39.99 3.46
407 805 2.624264 GTGTGCCAACGTGACGTC 59.376 61.111 12.37 9.11 39.99 4.34
430 828 4.157840 GCCATTCGGATTCTTAAACAAGGT 59.842 41.667 0.00 0.00 0.00 3.50
432 830 5.309323 TGCCATTCGGATTCTTAAACAAG 57.691 39.130 0.00 0.00 0.00 3.16
445 850 1.991965 CGTGGAATTTTTGCCATTCGG 59.008 47.619 0.00 0.00 36.41 4.30
452 857 1.287503 TCCGCCGTGGAATTTTTGC 59.712 52.632 0.00 0.00 46.38 3.68
471 876 8.296799 ACACGACGTTGTTTGTTTATAGAATA 57.703 30.769 5.46 0.00 0.00 1.75
472 877 7.181143 ACACGACGTTGTTTGTTTATAGAAT 57.819 32.000 5.46 0.00 0.00 2.40
476 881 4.502282 ACGACACGACGTTGTTTGTTTATA 59.498 37.500 5.46 0.00 44.14 0.98
477 882 3.306703 ACGACACGACGTTGTTTGTTTAT 59.693 39.130 5.46 0.00 44.14 1.40
478 883 2.665537 ACGACACGACGTTGTTTGTTTA 59.334 40.909 5.46 0.00 44.14 2.01
482 889 0.367548 ACACGACACGACGTTGTTTG 59.632 50.000 5.46 4.05 44.76 2.93
530 944 5.065235 CCGGGTGGTAAAAGAAAGAGTTTA 58.935 41.667 0.00 0.00 0.00 2.01
534 948 2.433436 CCCGGGTGGTAAAAGAAAGAG 58.567 52.381 14.18 0.00 0.00 2.85
548 995 0.186386 TTTTTGACATGGACCCGGGT 59.814 50.000 30.81 30.81 0.00 5.28
615 1077 2.483491 CAGAGACTTTTTCTGCTGCCTC 59.517 50.000 0.00 0.00 36.04 4.70
616 1078 2.105477 TCAGAGACTTTTTCTGCTGCCT 59.895 45.455 0.00 0.00 41.41 4.75
617 1079 2.498167 TCAGAGACTTTTTCTGCTGCC 58.502 47.619 0.00 0.00 41.41 4.85
618 1080 4.762956 AATCAGAGACTTTTTCTGCTGC 57.237 40.909 0.00 0.00 41.41 5.25
619 1081 7.620397 GAAAAATCAGAGACTTTTTCTGCTG 57.380 36.000 11.07 0.00 43.26 4.41
624 1086 6.794636 GCGAGAGAAAAATCAGAGACTTTTTC 59.205 38.462 10.60 10.60 45.30 2.29
646 1109 6.210720 AGTTAATACTGTACCGCTTCGCGA 62.211 45.833 3.71 3.71 43.60 5.87
647 1110 4.032789 AGTTAATACTGTACCGCTTCGCG 61.033 47.826 0.00 0.00 41.83 5.87
648 1111 3.242248 CAGTTAATACTGTACCGCTTCGC 59.758 47.826 0.00 0.00 45.46 4.70
675 1140 4.148825 GGCAGTGCCGGACGATCT 62.149 66.667 20.55 0.00 39.62 2.75
755 1236 2.125512 GCTTGCGTCTCGGGATGT 60.126 61.111 6.34 0.00 0.00 3.06
786 1276 3.267860 GCGGCATCGGAGCAGAAG 61.268 66.667 0.00 0.00 36.79 2.85
787 1277 4.838152 GGCGGCATCGGAGCAGAA 62.838 66.667 3.07 0.00 36.79 3.02
839 1353 1.632422 GAATGGTACGTACACGGGTG 58.368 55.000 26.02 0.00 44.95 4.61
847 1361 1.433064 GACGGGCGAATGGTACGTA 59.567 57.895 0.00 0.00 37.96 3.57
961 1479 1.754226 GCACACTTCTTGGAACCCAAA 59.246 47.619 0.00 0.00 43.44 3.28
988 1521 2.630592 GAACCCATCTCCGGCGTCTC 62.631 65.000 6.01 0.00 0.00 3.36
1029 1562 4.373116 TTGGGCAGCTCGACGTCC 62.373 66.667 10.58 0.00 0.00 4.79
1172 1726 1.803334 AAAAGATGAAGCGCCGTACA 58.197 45.000 2.29 0.00 0.00 2.90
1191 1745 1.662446 GACGGCGTCTCGGTGAAAA 60.662 57.895 31.15 0.00 0.00 2.29
1193 1747 4.047059 GGACGGCGTCTCGGTGAA 62.047 66.667 35.42 0.00 32.47 3.18
1195 1749 3.642778 AATGGACGGCGTCTCGGTG 62.643 63.158 35.42 0.00 32.47 4.94
1196 1750 3.352338 GAATGGACGGCGTCTCGGT 62.352 63.158 35.42 20.23 32.47 4.69
1198 1752 2.582498 GGAATGGACGGCGTCTCG 60.582 66.667 35.42 0.00 32.47 4.04
1199 1753 2.351336 ATCGGAATGGACGGCGTCTC 62.351 60.000 35.42 25.65 32.47 3.36
1200 1754 1.956629 AATCGGAATGGACGGCGTCT 61.957 55.000 35.42 19.44 32.47 4.18
1201 1755 1.488261 GAATCGGAATGGACGGCGTC 61.488 60.000 30.72 30.72 0.00 5.19
1205 1759 0.657840 GCAAGAATCGGAATGGACGG 59.342 55.000 0.00 0.00 0.00 4.79
1211 1765 2.096496 CGAAGCAAGCAAGAATCGGAAT 59.904 45.455 0.00 0.00 0.00 3.01
1263 1817 3.493503 CCGCCGTGGAAGATAAAGATTAC 59.506 47.826 0.00 0.00 42.00 1.89
1264 1818 3.385433 TCCGCCGTGGAAGATAAAGATTA 59.615 43.478 0.00 0.00 46.38 1.75
1265 1819 2.169769 TCCGCCGTGGAAGATAAAGATT 59.830 45.455 0.00 0.00 46.38 2.40
1266 1820 1.760613 TCCGCCGTGGAAGATAAAGAT 59.239 47.619 0.00 0.00 46.38 2.40
1267 1821 1.187974 TCCGCCGTGGAAGATAAAGA 58.812 50.000 0.00 0.00 46.38 2.52
1268 1822 3.752796 TCCGCCGTGGAAGATAAAG 57.247 52.632 0.00 0.00 46.38 1.85
1326 1887 1.047801 TCCCAAAAAGCAGCCTTTCC 58.952 50.000 0.00 0.00 40.30 3.13
1327 1888 2.103094 ACTTCCCAAAAAGCAGCCTTTC 59.897 45.455 0.00 0.00 40.30 2.62
1328 1889 2.118679 ACTTCCCAAAAAGCAGCCTTT 58.881 42.857 0.00 0.00 42.93 3.11
1329 1890 1.793414 ACTTCCCAAAAAGCAGCCTT 58.207 45.000 0.00 0.00 0.00 4.35
1330 1891 2.158460 AGTACTTCCCAAAAAGCAGCCT 60.158 45.455 0.00 0.00 0.00 4.58
1332 1893 4.322080 AAAGTACTTCCCAAAAAGCAGC 57.678 40.909 8.95 0.00 0.00 5.25
1333 1894 6.573434 AGAAAAAGTACTTCCCAAAAAGCAG 58.427 36.000 8.95 0.00 0.00 4.24
1334 1895 6.538945 AGAAAAAGTACTTCCCAAAAAGCA 57.461 33.333 8.95 0.00 0.00 3.91
1503 2071 0.721154 TGCGCTGATAAAAGTCGCTG 59.279 50.000 9.73 0.00 40.74 5.18
1651 2250 1.236616 TTCCATGGTTGCAGCGACAG 61.237 55.000 15.07 3.87 0.00 3.51
1653 2252 0.109597 CTTTCCATGGTTGCAGCGAC 60.110 55.000 12.58 3.86 0.00 5.19
1654 2253 0.250684 TCTTTCCATGGTTGCAGCGA 60.251 50.000 12.58 0.00 0.00 4.93
1700 2299 0.474614 GTCCCCCTAAGAATCTGGCC 59.525 60.000 0.00 0.00 0.00 5.36
1754 2353 7.222611 CACACAAGACTGAAACTTTAAATTGGG 59.777 37.037 0.00 0.00 0.00 4.12
1762 2361 5.491982 AGAGACACACAAGACTGAAACTTT 58.508 37.500 0.00 0.00 0.00 2.66
1775 2374 1.806461 GCGACAGGGAGAGACACACA 61.806 60.000 0.00 0.00 0.00 3.72
1776 2375 1.080434 GCGACAGGGAGAGACACAC 60.080 63.158 0.00 0.00 0.00 3.82
1807 2408 0.936297 CCAGCAACAACGAAGCAAGC 60.936 55.000 0.00 0.00 0.00 4.01
1816 2417 0.177836 AGCCAAAACCCAGCAACAAC 59.822 50.000 0.00 0.00 0.00 3.32
1818 2419 0.396974 AGAGCCAAAACCCAGCAACA 60.397 50.000 0.00 0.00 0.00 3.33
1822 2423 4.737649 GCAATATTAGAGCCAAAACCCAGC 60.738 45.833 0.00 0.00 0.00 4.85
1843 2444 4.766373 TGGCACTTGATTTCAGATAAAGCA 59.234 37.500 0.00 0.00 0.00 3.91
1848 2449 3.054139 AGGCTGGCACTTGATTTCAGATA 60.054 43.478 3.38 0.00 0.00 1.98
1890 2491 2.297033 CCACTGGCTTGCACACTTATTT 59.703 45.455 0.00 0.00 0.00 1.40
1914 2515 4.840401 TTTGATAGAAACATCGTCGCAG 57.160 40.909 0.00 0.00 0.00 5.18
1923 2524 7.757624 GGACCGCATTAAAATTTGATAGAAACA 59.242 33.333 0.00 0.00 0.00 2.83
2006 2608 2.171003 GCTACCTGCAAATTGGGTTCT 58.829 47.619 0.00 0.00 42.31 3.01
2074 2676 1.905637 TGCTGTAGAAGTCGTCCTCA 58.094 50.000 0.00 0.00 0.00 3.86
2132 2742 5.832539 ATGGAATCCTCTTATACAGTGGG 57.167 43.478 0.00 0.00 36.86 4.61
2134 2744 7.816995 GCTAGAATGGAATCCTCTTATACAGTG 59.183 40.741 0.00 0.00 0.00 3.66
2160 2770 6.621316 ATGGGAGTATATAATACTCGAGCG 57.379 41.667 13.61 0.00 43.53 5.03
2164 2774 9.574458 CACAAGAATGGGAGTATATAATACTCG 57.426 37.037 16.80 6.80 43.53 4.18
2203 2813 2.700897 AGAAACATCGGTATGGAGAGGG 59.299 50.000 0.00 0.00 37.43 4.30
2428 3038 1.442769 TGTCTCAAGAAGCAATCGGC 58.557 50.000 0.00 0.00 45.30 5.54
2451 3062 2.634453 CAAAATCAAAGGCCCTCAACCT 59.366 45.455 0.00 0.00 40.02 3.50
2676 3291 0.401738 CAGGGGCTGGAGACTTGAAA 59.598 55.000 0.00 0.00 0.00 2.69
2681 3296 2.530151 TTGCAGGGGCTGGAGACT 60.530 61.111 0.00 0.00 41.91 3.24
2717 3332 6.535865 TCTTATGGTTAAGCGCTTTATCGAAA 59.464 34.615 30.13 15.70 35.72 3.46
2719 3334 5.593968 TCTTATGGTTAAGCGCTTTATCGA 58.406 37.500 30.13 15.74 35.72 3.59
2721 3336 8.936864 ACATATCTTATGGTTAAGCGCTTTATC 58.063 33.333 30.13 20.72 35.72 1.75
2722 3337 8.848474 ACATATCTTATGGTTAAGCGCTTTAT 57.152 30.769 30.13 18.71 35.72 1.40
2723 3338 8.671384 AACATATCTTATGGTTAAGCGCTTTA 57.329 30.769 30.13 17.65 35.72 1.85
2724 3339 7.499232 AGAACATATCTTATGGTTAAGCGCTTT 59.501 33.333 30.13 12.59 33.39 3.51
2725 3340 6.992715 AGAACATATCTTATGGTTAAGCGCTT 59.007 34.615 27.97 27.97 33.39 4.68
2726 3341 6.525629 AGAACATATCTTATGGTTAAGCGCT 58.474 36.000 2.64 2.64 33.39 5.92
2727 3342 6.787085 AGAACATATCTTATGGTTAAGCGC 57.213 37.500 0.00 0.00 33.39 5.92
2736 3351 8.943002 TGCATAGCATGAAGAACATATCTTATG 58.057 33.333 0.00 0.00 40.25 1.90
2737 3352 9.163899 CTGCATAGCATGAAGAACATATCTTAT 57.836 33.333 0.00 0.00 42.57 1.73
2738 3353 8.370182 TCTGCATAGCATGAAGAACATATCTTA 58.630 33.333 0.00 0.00 41.98 2.10
2739 3354 7.222161 TCTGCATAGCATGAAGAACATATCTT 58.778 34.615 0.00 0.00 41.98 2.40
2740 3355 6.766429 TCTGCATAGCATGAAGAACATATCT 58.234 36.000 0.00 0.00 41.98 1.98
2927 3542 1.289380 GCTCTCTCCGGTGTCGTTT 59.711 57.895 0.00 0.00 33.95 3.60
3013 3631 2.149383 ACAGACTTCCCAGCTGCCA 61.149 57.895 8.66 0.00 33.03 4.92
3014 3632 1.673665 CACAGACTTCCCAGCTGCC 60.674 63.158 8.66 0.00 33.03 4.85
3083 3701 2.423898 CCGCTCTTTCCGGCTCCTA 61.424 63.158 0.00 0.00 39.22 2.94
3256 3881 5.886474 TGATCAGGTTCAGGTAGTAGTAGTG 59.114 44.000 0.00 0.00 0.00 2.74
3480 4124 1.010419 GCACAGGCCGAAGCATTTTG 61.010 55.000 10.81 0.00 42.56 2.44
3507 4151 1.487976 CAGAGGCAGGCAAGGAGATTA 59.512 52.381 0.00 0.00 0.00 1.75
3617 4266 6.876789 TCCATTTCTGCGACAAGTAATTCTAA 59.123 34.615 0.00 0.00 0.00 2.10
3619 4268 5.245531 TCCATTTCTGCGACAAGTAATTCT 58.754 37.500 0.00 0.00 0.00 2.40
3620 4269 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
3621 4270 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
3622 4271 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
3623 4272 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
3625 4274 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
3626 4275 4.024556 GGATACATCCATTTCTGCGACAAG 60.025 45.833 3.26 0.00 46.38 3.16
3627 4276 3.876914 GGATACATCCATTTCTGCGACAA 59.123 43.478 3.26 0.00 46.38 3.18
3628 4277 3.466836 GGATACATCCATTTCTGCGACA 58.533 45.455 3.26 0.00 46.38 4.35
3659 4308 9.967346 CTCGAAAATGGATGTATCTAGAACTAA 57.033 33.333 0.00 0.00 0.00 2.24
3660 4309 9.350951 TCTCGAAAATGGATGTATCTAGAACTA 57.649 33.333 0.00 0.00 0.00 2.24
3661 4310 8.239038 TCTCGAAAATGGATGTATCTAGAACT 57.761 34.615 0.00 0.00 0.00 3.01
3672 4321 9.586150 CGAAATTACTTATCTCGAAAATGGATG 57.414 33.333 0.00 0.00 0.00 3.51
3673 4322 9.542462 TCGAAATTACTTATCTCGAAAATGGAT 57.458 29.630 0.00 0.00 35.74 3.41
3674 4323 8.936070 TCGAAATTACTTATCTCGAAAATGGA 57.064 30.769 0.00 0.00 35.74 3.41
3675 4324 9.422196 GTTCGAAATTACTTATCTCGAAAATGG 57.578 33.333 9.69 0.00 46.49 3.16
3676 4325 9.133218 CGTTCGAAATTACTTATCTCGAAAATG 57.867 33.333 9.69 1.94 46.49 2.32
3677 4326 8.325997 CCGTTCGAAATTACTTATCTCGAAAAT 58.674 33.333 9.69 0.00 46.49 1.82
3678 4327 7.541783 TCCGTTCGAAATTACTTATCTCGAAAA 59.458 33.333 9.69 0.00 46.49 2.29
3679 4328 7.028962 TCCGTTCGAAATTACTTATCTCGAAA 58.971 34.615 9.69 0.00 46.49 3.46
3680 4329 6.554419 TCCGTTCGAAATTACTTATCTCGAA 58.446 36.000 0.00 5.10 43.89 3.71
3681 4330 6.122850 TCCGTTCGAAATTACTTATCTCGA 57.877 37.500 0.00 0.00 36.80 4.04
3682 4331 5.398711 CCTCCGTTCGAAATTACTTATCTCG 59.601 44.000 0.00 0.00 0.00 4.04
3683 4332 5.690857 CCCTCCGTTCGAAATTACTTATCTC 59.309 44.000 0.00 0.00 0.00 2.75
3684 4333 5.361857 TCCCTCCGTTCGAAATTACTTATCT 59.638 40.000 0.00 0.00 0.00 1.98
3685 4334 5.594926 TCCCTCCGTTCGAAATTACTTATC 58.405 41.667 0.00 0.00 0.00 1.75
3686 4335 5.128335 ACTCCCTCCGTTCGAAATTACTTAT 59.872 40.000 0.00 0.00 0.00 1.73
3687 4336 4.463891 ACTCCCTCCGTTCGAAATTACTTA 59.536 41.667 0.00 0.00 0.00 2.24
3688 4337 3.260128 ACTCCCTCCGTTCGAAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
3689 4338 2.830321 ACTCCCTCCGTTCGAAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
3690 4339 3.242549 ACTCCCTCCGTTCGAAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
3691 4340 4.019174 ACTACTCCCTCCGTTCGAAATTA 58.981 43.478 0.00 0.00 0.00 1.40
3692 4341 2.830321 ACTACTCCCTCCGTTCGAAATT 59.170 45.455 0.00 0.00 0.00 1.82
3693 4342 2.454538 ACTACTCCCTCCGTTCGAAAT 58.545 47.619 0.00 0.00 0.00 2.17
3694 4343 1.915141 ACTACTCCCTCCGTTCGAAA 58.085 50.000 0.00 0.00 0.00 3.46
3695 4344 2.359900 GTACTACTCCCTCCGTTCGAA 58.640 52.381 0.00 0.00 0.00 3.71
3696 4345 1.407437 GGTACTACTCCCTCCGTTCGA 60.407 57.143 0.00 0.00 0.00 3.71
3697 4346 1.020437 GGTACTACTCCCTCCGTTCG 58.980 60.000 0.00 0.00 0.00 3.95
3698 4347 2.433662 AGGTACTACTCCCTCCGTTC 57.566 55.000 0.00 0.00 36.02 3.95
3750 4399 0.678950 CCACAAACCCCACCAATCAC 59.321 55.000 0.00 0.00 0.00 3.06
3751 4400 1.118356 GCCACAAACCCCACCAATCA 61.118 55.000 0.00 0.00 0.00 2.57
3791 4451 1.238439 CACAGGCGAAATCCACTTGT 58.762 50.000 0.00 0.00 0.00 3.16
3808 4468 0.827507 ACAATTGGCACCCTGGACAC 60.828 55.000 10.83 0.00 0.00 3.67
3867 4528 2.661866 GGATTCCGCCGTGATCCG 60.662 66.667 1.01 0.00 0.00 4.18
3973 4634 0.608856 TGGTGCATGATGACCCACAC 60.609 55.000 0.00 0.00 0.00 3.82
4004 4665 2.119009 TGGTGCACCATCGCAAAAA 58.881 47.368 34.74 8.74 45.14 1.94
4005 4666 3.847621 TGGTGCACCATCGCAAAA 58.152 50.000 34.74 9.57 45.14 2.44
4018 4679 1.603678 GCACATCAAAAGGCAGTGGTG 60.604 52.381 0.00 0.00 31.88 4.17
4019 4680 0.675633 GCACATCAAAAGGCAGTGGT 59.324 50.000 0.00 0.00 0.00 4.16
4020 4681 0.675083 TGCACATCAAAAGGCAGTGG 59.325 50.000 0.00 0.00 0.00 4.00
4021 4682 2.333926 CATGCACATCAAAAGGCAGTG 58.666 47.619 0.00 0.00 39.95 3.66
4022 4683 1.274167 CCATGCACATCAAAAGGCAGT 59.726 47.619 0.00 0.00 39.95 4.40
4023 4684 1.546923 TCCATGCACATCAAAAGGCAG 59.453 47.619 0.00 0.00 39.95 4.85
4024 4685 1.630223 TCCATGCACATCAAAAGGCA 58.370 45.000 0.00 0.00 41.00 4.75
4025 4686 2.288948 TGTTCCATGCACATCAAAAGGC 60.289 45.455 0.00 0.00 0.00 4.35
4026 4687 3.006110 ACTGTTCCATGCACATCAAAAGG 59.994 43.478 0.00 0.00 0.00 3.11
4027 4688 4.247267 ACTGTTCCATGCACATCAAAAG 57.753 40.909 0.00 0.00 0.00 2.27
4028 4689 4.320129 CGTACTGTTCCATGCACATCAAAA 60.320 41.667 0.00 0.00 0.00 2.44
4029 4690 3.188254 CGTACTGTTCCATGCACATCAAA 59.812 43.478 0.00 0.00 0.00 2.69
4035 4696 1.196808 CCAACGTACTGTTCCATGCAC 59.803 52.381 0.00 0.00 39.29 4.57
4045 4706 6.456449 GGTTTGCATATAAGACCAACGTACTG 60.456 42.308 0.00 0.00 0.00 2.74
4082 4743 3.072330 TCTCTCTCTCTCTCACACACACT 59.928 47.826 0.00 0.00 0.00 3.55
4085 4746 2.420022 GCTCTCTCTCTCTCTCACACAC 59.580 54.545 0.00 0.00 0.00 3.82
4086 4747 2.039613 TGCTCTCTCTCTCTCTCACACA 59.960 50.000 0.00 0.00 0.00 3.72
4087 4748 2.710377 TGCTCTCTCTCTCTCTCACAC 58.290 52.381 0.00 0.00 0.00 3.82
4088 4749 3.081061 GTTGCTCTCTCTCTCTCTCACA 58.919 50.000 0.00 0.00 0.00 3.58
4089 4750 3.081061 TGTTGCTCTCTCTCTCTCTCAC 58.919 50.000 0.00 0.00 0.00 3.51
4090 4751 3.081061 GTGTTGCTCTCTCTCTCTCTCA 58.919 50.000 0.00 0.00 0.00 3.27
4091 4752 3.081061 TGTGTTGCTCTCTCTCTCTCTC 58.919 50.000 0.00 0.00 0.00 3.20
4092 4753 3.153369 TGTGTTGCTCTCTCTCTCTCT 57.847 47.619 0.00 0.00 0.00 3.10
4093 4754 3.932545 TTGTGTTGCTCTCTCTCTCTC 57.067 47.619 0.00 0.00 0.00 3.20
4094 4755 3.244044 GGTTTGTGTTGCTCTCTCTCTCT 60.244 47.826 0.00 0.00 0.00 3.10
4163 4824 8.277197 TGAAAGATGGGTTCAGAAATCAGATAT 58.723 33.333 0.00 0.00 31.45 1.63
4164 4825 7.632861 TGAAAGATGGGTTCAGAAATCAGATA 58.367 34.615 0.00 0.00 31.45 1.98
4165 4826 6.487828 TGAAAGATGGGTTCAGAAATCAGAT 58.512 36.000 0.00 0.00 31.45 2.90
4166 4827 5.879763 TGAAAGATGGGTTCAGAAATCAGA 58.120 37.500 0.00 0.00 31.45 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.