Multiple sequence alignment - TraesCS3D01G422800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G422800 chr3D 100.000 4483 0 0 1 4483 535581994 535577512 0.000000e+00 8279.0
1 TraesCS3D01G422800 chr3D 96.329 681 25 0 3803 4483 120626122 120626802 0.000000e+00 1120.0
2 TraesCS3D01G422800 chr3D 96.313 678 23 1 3806 4483 553039008 553039683 0.000000e+00 1112.0
3 TraesCS3D01G422800 chr3D 96.165 678 24 1 3806 4483 553077528 553078203 0.000000e+00 1107.0
4 TraesCS3D01G422800 chr3A 94.661 1667 86 2 1832 3498 670762933 670761270 0.000000e+00 2582.0
5 TraesCS3D01G422800 chr3A 93.543 573 32 3 1219 1791 670765718 670765151 0.000000e+00 848.0
6 TraesCS3D01G422800 chr3A 88.994 318 22 9 3490 3795 670751082 670750766 9.100000e-102 381.0
7 TraesCS3D01G422800 chr3A 94.845 194 10 0 1029 1222 670820560 670820367 2.030000e-78 303.0
8 TraesCS3D01G422800 chr3B 97.781 1352 30 0 1643 2994 707054588 707053237 0.000000e+00 2331.0
9 TraesCS3D01G422800 chr3B 94.516 1404 60 9 255 1652 707056161 707054769 0.000000e+00 2150.0
10 TraesCS3D01G422800 chr3B 96.807 689 22 0 2990 3678 707044619 707043931 0.000000e+00 1151.0
11 TraesCS3D01G422800 chr3B 98.000 50 1 0 2652 2701 512413669 512413718 2.220000e-13 87.9
12 TraesCS3D01G422800 chr7D 96.471 680 22 1 3806 4483 185760498 185759819 0.000000e+00 1122.0
13 TraesCS3D01G422800 chr7D 96.318 679 24 1 3806 4483 144159705 144159027 0.000000e+00 1114.0
14 TraesCS3D01G422800 chr7D 96.018 678 27 0 3806 4483 260980 261657 0.000000e+00 1103.0
15 TraesCS3D01G422800 chr2D 96.460 678 23 1 3806 4483 461080533 461081209 0.000000e+00 1118.0
16 TraesCS3D01G422800 chr2D 95.870 678 28 0 3806 4483 55162133 55161456 0.000000e+00 1098.0
17 TraesCS3D01G422800 chr5A 96.041 682 27 0 3802 4483 290927815 290927134 0.000000e+00 1110.0
18 TraesCS3D01G422800 chr2A 82.670 427 25 27 97 488 771986074 771985662 2.580000e-87 333.0
19 TraesCS3D01G422800 chr6D 73.052 616 145 20 2842 3445 7034319 7034925 9.840000e-47 198.0
20 TraesCS3D01G422800 chr6D 71.130 575 138 24 2886 3443 60519571 60519008 2.830000e-22 117.0
21 TraesCS3D01G422800 chr4A 71.338 628 149 24 2836 3443 603727247 603726631 2.810000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G422800 chr3D 535577512 535581994 4482 True 8279.0 8279 100.0000 1 4483 1 chr3D.!!$R1 4482
1 TraesCS3D01G422800 chr3D 120626122 120626802 680 False 1120.0 1120 96.3290 3803 4483 1 chr3D.!!$F1 680
2 TraesCS3D01G422800 chr3D 553039008 553039683 675 False 1112.0 1112 96.3130 3806 4483 1 chr3D.!!$F2 677
3 TraesCS3D01G422800 chr3D 553077528 553078203 675 False 1107.0 1107 96.1650 3806 4483 1 chr3D.!!$F3 677
4 TraesCS3D01G422800 chr3A 670761270 670765718 4448 True 1715.0 2582 94.1020 1219 3498 2 chr3A.!!$R3 2279
5 TraesCS3D01G422800 chr3B 707053237 707056161 2924 True 2240.5 2331 96.1485 255 2994 2 chr3B.!!$R2 2739
6 TraesCS3D01G422800 chr3B 707043931 707044619 688 True 1151.0 1151 96.8070 2990 3678 1 chr3B.!!$R1 688
7 TraesCS3D01G422800 chr7D 185759819 185760498 679 True 1122.0 1122 96.4710 3806 4483 1 chr7D.!!$R2 677
8 TraesCS3D01G422800 chr7D 144159027 144159705 678 True 1114.0 1114 96.3180 3806 4483 1 chr7D.!!$R1 677
9 TraesCS3D01G422800 chr7D 260980 261657 677 False 1103.0 1103 96.0180 3806 4483 1 chr7D.!!$F1 677
10 TraesCS3D01G422800 chr2D 461080533 461081209 676 False 1118.0 1118 96.4600 3806 4483 1 chr2D.!!$F1 677
11 TraesCS3D01G422800 chr2D 55161456 55162133 677 True 1098.0 1098 95.8700 3806 4483 1 chr2D.!!$R1 677
12 TraesCS3D01G422800 chr5A 290927134 290927815 681 True 1110.0 1110 96.0410 3802 4483 1 chr5A.!!$R1 681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
170 171 0.104671 GAGAGAGCAGAGACCATGGC 59.895 60.0 13.04 4.7 0.00 4.40 F
228 229 0.249031 GCAAAGTCAAAGTGCGGCTT 60.249 50.0 0.00 0.0 39.52 4.35 F
579 589 0.251354 GAGGATCAGACAGCTGCCAA 59.749 55.0 15.27 0.0 42.01 4.52 F
1052 1062 0.252479 AGCATGCTCCCTTCACTCAG 59.748 55.0 16.30 0.0 0.00 3.35 F
1060 1070 0.615850 CCCTTCACTCAGAACCCTCC 59.384 60.0 0.00 0.0 31.61 4.30 F
2855 5232 0.110486 TCACCAAGGGGCAAGAACTC 59.890 55.0 0.00 0.0 37.90 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1184 1194 0.320771 CACGTTCCAGAACCAGGAGG 60.321 60.000 4.99 0.00 38.03 4.30 R
1565 1575 0.666913 ACAACGGTATCGATCCTCCG 59.333 55.000 24.66 24.66 46.98 4.63 R
1566 1576 1.000496 GGACAACGGTATCGATCCTCC 60.000 57.143 0.34 2.55 40.11 4.30 R
2759 5136 2.579410 ACAAACCAATCCTTACCGCT 57.421 45.000 0.00 0.00 0.00 5.52 R
3004 5382 3.056080 AGTGACTGTATGGCCCCAATAT 58.944 45.455 0.00 0.00 0.00 1.28 R
3760 6138 0.998669 TGTCTGTATGCATTCACGCG 59.001 50.000 3.54 3.53 33.35 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.528674 AGACTGTGATGCATCGCC 57.471 55.556 31.71 20.37 36.51 5.54
18 19 1.520120 AGACTGTGATGCATCGCCG 60.520 57.895 31.71 28.10 36.51 6.46
19 20 1.519234 GACTGTGATGCATCGCCGA 60.519 57.895 31.71 16.96 36.51 5.54
20 21 1.485838 GACTGTGATGCATCGCCGAG 61.486 60.000 31.71 25.64 36.51 4.63
21 22 1.227060 CTGTGATGCATCGCCGAGA 60.227 57.895 31.71 15.98 36.51 4.04
22 23 1.485838 CTGTGATGCATCGCCGAGAC 61.486 60.000 31.71 18.94 36.51 3.36
23 24 2.278792 TGATGCATCGCCGAGACG 60.279 61.111 21.34 0.00 0.00 4.18
25 26 2.013483 GATGCATCGCCGAGACGAG 61.013 63.158 11.68 0.00 46.69 4.18
26 27 3.490793 ATGCATCGCCGAGACGAGG 62.491 63.158 0.00 3.36 46.69 4.63
32 33 4.539881 GCCGAGACGAGGCGAGAC 62.540 72.222 0.00 0.00 45.58 3.36
33 34 4.225340 CCGAGACGAGGCGAGACG 62.225 72.222 0.00 0.00 0.00 4.18
45 46 4.112341 GAGACGCGTACCTGCCGT 62.112 66.667 13.97 0.00 0.00 5.68
46 47 2.747460 AGACGCGTACCTGCCGTA 60.747 61.111 13.97 0.00 0.00 4.02
47 48 2.577911 GACGCGTACCTGCCGTAC 60.578 66.667 13.97 0.00 43.45 3.67
54 55 2.965477 GTACCTGCCGTACGAGATAG 57.035 55.000 18.76 8.75 38.17 2.08
55 56 2.487934 GTACCTGCCGTACGAGATAGA 58.512 52.381 18.76 0.00 38.17 1.98
56 57 1.307097 ACCTGCCGTACGAGATAGAC 58.693 55.000 18.76 0.00 0.00 2.59
57 58 0.592148 CCTGCCGTACGAGATAGACC 59.408 60.000 18.76 0.00 0.00 3.85
58 59 1.595466 CTGCCGTACGAGATAGACCT 58.405 55.000 18.76 0.00 0.00 3.85
59 60 1.532007 CTGCCGTACGAGATAGACCTC 59.468 57.143 18.76 0.00 0.00 3.85
60 61 1.140452 TGCCGTACGAGATAGACCTCT 59.860 52.381 18.76 0.00 0.00 3.69
61 62 1.532007 GCCGTACGAGATAGACCTCTG 59.468 57.143 18.76 0.00 0.00 3.35
62 63 2.806019 GCCGTACGAGATAGACCTCTGA 60.806 54.545 18.76 0.00 0.00 3.27
63 64 2.801679 CCGTACGAGATAGACCTCTGAC 59.198 54.545 18.76 0.00 0.00 3.51
64 65 2.472115 CGTACGAGATAGACCTCTGACG 59.528 54.545 10.44 0.00 34.79 4.35
65 66 2.695127 ACGAGATAGACCTCTGACGT 57.305 50.000 0.00 0.00 0.00 4.34
66 67 2.281517 ACGAGATAGACCTCTGACGTG 58.718 52.381 0.00 0.00 0.00 4.49
67 68 2.093606 ACGAGATAGACCTCTGACGTGA 60.094 50.000 0.00 0.00 0.00 4.35
68 69 2.542178 CGAGATAGACCTCTGACGTGAG 59.458 54.545 0.00 0.00 0.00 3.51
69 70 3.738590 CGAGATAGACCTCTGACGTGAGA 60.739 52.174 4.23 4.23 36.23 3.27
70 71 3.804036 AGATAGACCTCTGACGTGAGAG 58.196 50.000 23.33 23.33 39.48 3.20
78 79 4.383850 CTCTGACGTGAGAGGATTCATT 57.616 45.455 22.68 0.00 36.57 2.57
79 80 4.753233 CTCTGACGTGAGAGGATTCATTT 58.247 43.478 22.68 0.00 36.57 2.32
80 81 5.152623 TCTGACGTGAGAGGATTCATTTT 57.847 39.130 0.00 0.00 0.00 1.82
81 82 5.171476 TCTGACGTGAGAGGATTCATTTTC 58.829 41.667 0.00 0.00 0.00 2.29
82 83 4.253685 TGACGTGAGAGGATTCATTTTCC 58.746 43.478 0.00 0.00 0.00 3.13
83 84 4.253685 GACGTGAGAGGATTCATTTTCCA 58.746 43.478 0.00 0.00 35.59 3.53
84 85 4.003648 ACGTGAGAGGATTCATTTTCCAC 58.996 43.478 0.00 0.00 35.59 4.02
85 86 4.002982 CGTGAGAGGATTCATTTTCCACA 58.997 43.478 0.00 0.00 35.59 4.17
86 87 4.455533 CGTGAGAGGATTCATTTTCCACAA 59.544 41.667 0.00 0.00 35.59 3.33
87 88 5.124457 CGTGAGAGGATTCATTTTCCACAAT 59.876 40.000 0.00 0.00 35.59 2.71
88 89 6.558909 GTGAGAGGATTCATTTTCCACAATC 58.441 40.000 0.00 0.00 35.59 2.67
89 90 5.355071 TGAGAGGATTCATTTTCCACAATCG 59.645 40.000 0.00 0.00 35.59 3.34
90 91 5.256474 AGAGGATTCATTTTCCACAATCGT 58.744 37.500 0.00 0.00 35.59 3.73
91 92 5.711976 AGAGGATTCATTTTCCACAATCGTT 59.288 36.000 0.00 0.00 35.59 3.85
92 93 6.884295 AGAGGATTCATTTTCCACAATCGTTA 59.116 34.615 0.00 0.00 35.59 3.18
93 94 7.557719 AGAGGATTCATTTTCCACAATCGTTAT 59.442 33.333 0.00 0.00 35.59 1.89
94 95 8.746052 AGGATTCATTTTCCACAATCGTTATA 57.254 30.769 0.00 0.00 35.59 0.98
95 96 9.184523 AGGATTCATTTTCCACAATCGTTATAA 57.815 29.630 0.00 0.00 35.59 0.98
96 97 9.450807 GGATTCATTTTCCACAATCGTTATAAG 57.549 33.333 0.00 0.00 33.21 1.73
100 101 9.104965 TCATTTTCCACAATCGTTATAAGTAGG 57.895 33.333 0.00 0.00 0.00 3.18
101 102 9.104965 CATTTTCCACAATCGTTATAAGTAGGA 57.895 33.333 0.00 0.00 0.00 2.94
102 103 8.483307 TTTTCCACAATCGTTATAAGTAGGAC 57.517 34.615 0.00 0.00 0.00 3.85
103 104 7.414222 TTCCACAATCGTTATAAGTAGGACT 57.586 36.000 0.00 0.00 0.00 3.85
104 105 6.802608 TCCACAATCGTTATAAGTAGGACTG 58.197 40.000 0.00 0.00 0.00 3.51
105 106 5.983720 CCACAATCGTTATAAGTAGGACTGG 59.016 44.000 0.00 0.00 0.00 4.00
106 107 6.183360 CCACAATCGTTATAAGTAGGACTGGA 60.183 42.308 0.00 0.00 0.00 3.86
107 108 6.696148 CACAATCGTTATAAGTAGGACTGGAC 59.304 42.308 0.00 0.00 0.00 4.02
108 109 6.379133 ACAATCGTTATAAGTAGGACTGGACA 59.621 38.462 0.00 0.00 0.00 4.02
109 110 7.093640 ACAATCGTTATAAGTAGGACTGGACAA 60.094 37.037 0.00 0.00 0.00 3.18
110 111 7.598759 ATCGTTATAAGTAGGACTGGACAAT 57.401 36.000 0.00 0.00 0.00 2.71
111 112 7.035840 TCGTTATAAGTAGGACTGGACAATC 57.964 40.000 0.00 0.00 0.00 2.67
112 113 6.832384 TCGTTATAAGTAGGACTGGACAATCT 59.168 38.462 0.00 0.00 0.00 2.40
113 114 6.918569 CGTTATAAGTAGGACTGGACAATCTG 59.081 42.308 0.00 0.00 0.00 2.90
114 115 3.618690 AAGTAGGACTGGACAATCTGC 57.381 47.619 0.00 0.00 0.00 4.26
115 116 1.834263 AGTAGGACTGGACAATCTGCC 59.166 52.381 0.00 0.00 0.00 4.85
116 117 1.134371 GTAGGACTGGACAATCTGCCC 60.134 57.143 0.00 0.00 0.00 5.36
117 118 1.450312 GGACTGGACAATCTGCCCG 60.450 63.158 0.00 0.00 0.00 6.13
118 119 2.045926 ACTGGACAATCTGCCCGC 60.046 61.111 0.00 0.00 0.00 6.13
119 120 2.046023 CTGGACAATCTGCCCGCA 60.046 61.111 0.00 0.00 0.00 5.69
120 121 2.359850 TGGACAATCTGCCCGCAC 60.360 61.111 0.00 0.00 0.00 5.34
121 122 2.045926 GGACAATCTGCCCGCACT 60.046 61.111 0.00 0.00 0.00 4.40
122 123 1.220749 GGACAATCTGCCCGCACTA 59.779 57.895 0.00 0.00 0.00 2.74
123 124 0.811616 GGACAATCTGCCCGCACTAG 60.812 60.000 0.00 0.00 0.00 2.57
124 125 0.108138 GACAATCTGCCCGCACTAGT 60.108 55.000 0.00 0.00 0.00 2.57
125 126 0.324943 ACAATCTGCCCGCACTAGTT 59.675 50.000 0.00 0.00 0.00 2.24
126 127 1.553248 ACAATCTGCCCGCACTAGTTA 59.447 47.619 0.00 0.00 0.00 2.24
127 128 2.205074 CAATCTGCCCGCACTAGTTAG 58.795 52.381 0.00 0.00 0.00 2.34
128 129 1.486211 ATCTGCCCGCACTAGTTAGT 58.514 50.000 0.00 0.00 36.90 2.24
129 130 1.263356 TCTGCCCGCACTAGTTAGTT 58.737 50.000 0.00 0.00 33.46 2.24
130 131 2.449464 TCTGCCCGCACTAGTTAGTTA 58.551 47.619 0.00 0.00 33.46 2.24
131 132 2.426024 TCTGCCCGCACTAGTTAGTTAG 59.574 50.000 0.00 0.00 33.46 2.34
132 133 2.165845 CTGCCCGCACTAGTTAGTTAGT 59.834 50.000 0.00 0.00 33.46 2.24
134 135 2.737679 GCCCGCACTAGTTAGTTAGTGG 60.738 54.545 13.30 0.00 46.78 4.00
139 140 4.996344 GCACTAGTTAGTTAGTGGGAGAC 58.004 47.826 13.30 0.00 46.78 3.36
140 141 4.142204 GCACTAGTTAGTTAGTGGGAGACC 60.142 50.000 13.30 0.00 46.78 3.85
141 142 4.096081 CACTAGTTAGTTAGTGGGAGACCG 59.904 50.000 0.00 0.00 44.77 4.79
142 143 4.869796 ACTAGTTAGTTAGTGGGAGACCGG 60.870 50.000 0.00 0.00 44.36 5.28
150 151 4.222847 GGGAGACCGGCGGCTTAG 62.223 72.222 28.71 1.30 43.64 2.18
151 152 4.222847 GGAGACCGGCGGCTTAGG 62.223 72.222 28.71 3.25 0.00 2.69
152 153 3.145551 GAGACCGGCGGCTTAGGA 61.146 66.667 28.71 0.00 0.00 2.94
153 154 3.140225 GAGACCGGCGGCTTAGGAG 62.140 68.421 28.71 0.00 0.00 3.69
154 155 3.145551 GACCGGCGGCTTAGGAGA 61.146 66.667 28.71 0.00 0.00 3.71
155 156 3.140225 GACCGGCGGCTTAGGAGAG 62.140 68.421 28.71 0.00 0.00 3.20
156 157 2.833582 CCGGCGGCTTAGGAGAGA 60.834 66.667 15.42 0.00 0.00 3.10
157 158 2.725008 CGGCGGCTTAGGAGAGAG 59.275 66.667 7.61 0.00 0.00 3.20
158 159 2.419620 GGCGGCTTAGGAGAGAGC 59.580 66.667 0.00 0.00 38.17 4.09
159 160 2.427245 GGCGGCTTAGGAGAGAGCA 61.427 63.158 0.00 0.00 40.63 4.26
160 161 1.067250 GCGGCTTAGGAGAGAGCAG 59.933 63.158 0.00 0.00 40.63 4.24
161 162 1.388065 GCGGCTTAGGAGAGAGCAGA 61.388 60.000 0.00 0.00 40.63 4.26
162 163 0.667993 CGGCTTAGGAGAGAGCAGAG 59.332 60.000 0.00 0.00 40.63 3.35
163 164 1.748939 CGGCTTAGGAGAGAGCAGAGA 60.749 57.143 0.00 0.00 40.63 3.10
164 165 1.681264 GGCTTAGGAGAGAGCAGAGAC 59.319 57.143 0.00 0.00 40.63 3.36
165 166 1.681264 GCTTAGGAGAGAGCAGAGACC 59.319 57.143 0.00 0.00 38.73 3.85
166 167 2.948147 GCTTAGGAGAGAGCAGAGACCA 60.948 54.545 0.00 0.00 38.73 4.02
167 168 3.565307 CTTAGGAGAGAGCAGAGACCAT 58.435 50.000 0.00 0.00 0.00 3.55
168 169 1.779221 AGGAGAGAGCAGAGACCATG 58.221 55.000 0.00 0.00 0.00 3.66
169 170 0.752054 GGAGAGAGCAGAGACCATGG 59.248 60.000 11.19 11.19 0.00 3.66
170 171 0.104671 GAGAGAGCAGAGACCATGGC 59.895 60.000 13.04 4.70 0.00 4.40
171 172 1.227205 GAGAGCAGAGACCATGGCG 60.227 63.158 13.04 0.00 0.00 5.69
172 173 1.670949 GAGAGCAGAGACCATGGCGA 61.671 60.000 13.04 0.00 0.00 5.54
173 174 1.520342 GAGCAGAGACCATGGCGAC 60.520 63.158 13.04 3.69 0.00 5.19
174 175 2.512515 GCAGAGACCATGGCGACC 60.513 66.667 13.04 0.00 0.00 4.79
175 176 2.187946 CAGAGACCATGGCGACCC 59.812 66.667 13.04 0.00 0.00 4.46
176 177 3.083997 AGAGACCATGGCGACCCC 61.084 66.667 13.04 0.00 0.00 4.95
177 178 3.083997 GAGACCATGGCGACCCCT 61.084 66.667 13.04 0.00 0.00 4.79
178 179 2.610859 AGACCATGGCGACCCCTT 60.611 61.111 13.04 0.00 0.00 3.95
179 180 2.438434 GACCATGGCGACCCCTTG 60.438 66.667 13.04 0.00 38.24 3.61
180 181 3.256960 ACCATGGCGACCCCTTGT 61.257 61.111 13.04 0.00 37.11 3.16
181 182 1.906105 GACCATGGCGACCCCTTGTA 61.906 60.000 13.04 0.00 37.11 2.41
182 183 1.451387 CCATGGCGACCCCTTGTAC 60.451 63.158 0.00 0.00 37.11 2.90
183 184 1.451387 CATGGCGACCCCTTGTACC 60.451 63.158 0.00 0.00 34.80 3.34
184 185 1.921346 ATGGCGACCCCTTGTACCA 60.921 57.895 0.00 0.00 37.60 3.25
185 186 1.910580 ATGGCGACCCCTTGTACCAG 61.911 60.000 0.00 0.00 36.87 4.00
186 187 2.590114 GGCGACCCCTTGTACCAGT 61.590 63.158 0.00 0.00 0.00 4.00
187 188 1.079336 GCGACCCCTTGTACCAGTC 60.079 63.158 0.00 0.00 0.00 3.51
188 189 1.595357 CGACCCCTTGTACCAGTCC 59.405 63.158 0.00 0.00 0.00 3.85
189 190 1.595357 GACCCCTTGTACCAGTCCG 59.405 63.158 0.00 0.00 0.00 4.79
190 191 2.267961 CCCCTTGTACCAGTCCGC 59.732 66.667 0.00 0.00 0.00 5.54
191 192 2.267961 CCCTTGTACCAGTCCGCC 59.732 66.667 0.00 0.00 0.00 6.13
192 193 2.589157 CCCTTGTACCAGTCCGCCA 61.589 63.158 0.00 0.00 0.00 5.69
193 194 1.602237 CCTTGTACCAGTCCGCCAT 59.398 57.895 0.00 0.00 0.00 4.40
194 195 0.744414 CCTTGTACCAGTCCGCCATG 60.744 60.000 0.00 0.00 0.00 3.66
195 196 0.744414 CTTGTACCAGTCCGCCATGG 60.744 60.000 7.63 7.63 42.60 3.66
196 197 2.189521 GTACCAGTCCGCCATGGG 59.810 66.667 15.13 3.37 41.13 4.00
197 198 2.285069 TACCAGTCCGCCATGGGT 60.285 61.111 15.13 3.17 41.13 4.51
198 199 1.921346 TACCAGTCCGCCATGGGTT 60.921 57.895 15.13 0.00 41.13 4.11
199 200 1.906105 TACCAGTCCGCCATGGGTTC 61.906 60.000 15.13 0.00 41.13 3.62
200 201 2.350895 CAGTCCGCCATGGGTTCA 59.649 61.111 15.13 0.00 38.76 3.18
201 202 2.040544 CAGTCCGCCATGGGTTCAC 61.041 63.158 15.13 0.00 38.76 3.18
202 203 2.750237 GTCCGCCATGGGTTCACC 60.750 66.667 15.13 0.00 38.76 4.02
203 204 4.402528 TCCGCCATGGGTTCACCG 62.403 66.667 15.13 7.06 44.64 4.94
205 206 4.715523 CGCCATGGGTTCACCGGT 62.716 66.667 15.13 0.00 44.64 5.28
206 207 2.750237 GCCATGGGTTCACCGGTC 60.750 66.667 15.13 0.00 44.64 4.79
207 208 2.045340 CCATGGGTTCACCGGTCC 60.045 66.667 2.59 2.88 44.64 4.46
208 209 2.435938 CATGGGTTCACCGGTCCG 60.436 66.667 2.59 3.60 44.64 4.79
218 219 2.281208 CCGGTCCGGCAAAGTCAA 60.281 61.111 19.48 0.00 41.17 3.18
219 220 1.894756 CCGGTCCGGCAAAGTCAAA 60.895 57.895 19.48 0.00 41.17 2.69
220 221 1.574428 CGGTCCGGCAAAGTCAAAG 59.426 57.895 2.34 0.00 0.00 2.77
221 222 1.164041 CGGTCCGGCAAAGTCAAAGT 61.164 55.000 2.34 0.00 0.00 2.66
222 223 0.310854 GGTCCGGCAAAGTCAAAGTG 59.689 55.000 0.00 0.00 0.00 3.16
223 224 0.317854 GTCCGGCAAAGTCAAAGTGC 60.318 55.000 0.00 0.00 37.55 4.40
224 225 1.370414 CCGGCAAAGTCAAAGTGCG 60.370 57.895 0.00 0.00 39.22 5.34
225 226 1.370414 CGGCAAAGTCAAAGTGCGG 60.370 57.895 0.00 0.00 39.22 5.69
226 227 1.661509 GGCAAAGTCAAAGTGCGGC 60.662 57.895 0.00 0.00 39.22 6.53
227 228 1.360192 GCAAAGTCAAAGTGCGGCT 59.640 52.632 0.00 0.00 0.00 5.52
228 229 0.249031 GCAAAGTCAAAGTGCGGCTT 60.249 50.000 0.00 0.00 39.52 4.35
229 230 1.758783 CAAAGTCAAAGTGCGGCTTC 58.241 50.000 0.00 0.00 36.17 3.86
230 231 1.065401 CAAAGTCAAAGTGCGGCTTCA 59.935 47.619 0.00 0.00 36.17 3.02
231 232 0.663153 AAGTCAAAGTGCGGCTTCAC 59.337 50.000 0.00 1.48 36.17 3.18
232 233 1.082756 GTCAAAGTGCGGCTTCACG 60.083 57.895 0.00 0.00 41.61 4.35
233 234 1.227409 TCAAAGTGCGGCTTCACGA 60.227 52.632 0.00 0.00 41.61 4.35
234 235 0.602638 TCAAAGTGCGGCTTCACGAT 60.603 50.000 0.00 0.00 41.61 3.73
235 236 0.453282 CAAAGTGCGGCTTCACGATG 60.453 55.000 0.00 3.94 41.61 3.84
236 237 1.577328 AAAGTGCGGCTTCACGATGG 61.577 55.000 0.00 0.00 41.61 3.51
237 238 4.166011 GTGCGGCTTCACGATGGC 62.166 66.667 0.00 0.00 35.47 4.40
238 239 4.393155 TGCGGCTTCACGATGGCT 62.393 61.111 0.00 0.00 35.47 4.75
239 240 3.869272 GCGGCTTCACGATGGCTG 61.869 66.667 0.00 0.00 35.47 4.85
240 241 3.869272 CGGCTTCACGATGGCTGC 61.869 66.667 0.00 0.00 35.47 5.25
241 242 2.747460 GGCTTCACGATGGCTGCA 60.747 61.111 0.50 0.00 0.00 4.41
242 243 2.482374 GCTTCACGATGGCTGCAC 59.518 61.111 0.50 0.00 0.00 4.57
243 244 2.780643 CTTCACGATGGCTGCACG 59.219 61.111 0.50 6.77 0.00 5.34
244 245 2.029288 CTTCACGATGGCTGCACGT 61.029 57.895 11.51 11.51 40.87 4.49
245 246 1.959899 CTTCACGATGGCTGCACGTC 61.960 60.000 13.66 7.71 38.18 4.34
246 247 3.490759 CACGATGGCTGCACGTCC 61.491 66.667 13.66 0.00 38.18 4.79
252 253 4.735132 GGCTGCACGTCCGCACTA 62.735 66.667 0.50 0.00 36.86 2.74
253 254 3.181967 GCTGCACGTCCGCACTAG 61.182 66.667 0.00 0.00 36.86 2.57
276 277 7.141758 AGCTAAGAAATTGGTCTCCATCATA 57.858 36.000 0.00 0.00 31.53 2.15
277 278 7.577303 AGCTAAGAAATTGGTCTCCATCATAA 58.423 34.615 0.00 0.00 31.53 1.90
338 339 1.846541 GACCAAGCTCATCTACTCGC 58.153 55.000 0.00 0.00 0.00 5.03
340 341 2.619177 GACCAAGCTCATCTACTCGCTA 59.381 50.000 0.00 0.00 31.48 4.26
384 391 3.580319 GGCCACTTCCACCCACCT 61.580 66.667 0.00 0.00 0.00 4.00
425 435 3.507009 CCGTCGTCGTCCTCTCCC 61.507 72.222 0.71 0.00 35.01 4.30
515 525 1.086634 CGCTGCTAGCCTTCAAGGAC 61.087 60.000 7.98 0.00 37.67 3.85
571 581 1.657751 CTGGCGACGAGGATCAGACA 61.658 60.000 0.00 0.00 33.17 3.41
578 588 1.903294 GAGGATCAGACAGCTGCCA 59.097 57.895 15.27 0.00 42.01 4.92
579 589 0.251354 GAGGATCAGACAGCTGCCAA 59.749 55.000 15.27 0.00 42.01 4.52
756 766 2.581354 CTGGACCTCAGCCGGAAG 59.419 66.667 5.05 0.00 36.60 3.46
1012 1022 1.800286 CGATCGACATGAGCAGAGCAA 60.800 52.381 10.26 0.00 30.45 3.91
1013 1023 2.481854 GATCGACATGAGCAGAGCAAT 58.518 47.619 0.00 0.00 31.75 3.56
1052 1062 0.252479 AGCATGCTCCCTTCACTCAG 59.748 55.000 16.30 0.00 0.00 3.35
1056 1066 0.687354 TGCTCCCTTCACTCAGAACC 59.313 55.000 0.00 0.00 31.61 3.62
1060 1070 0.615850 CCCTTCACTCAGAACCCTCC 59.384 60.000 0.00 0.00 31.61 4.30
1099 1109 2.639286 CAAGCACGAACCAGTGGC 59.361 61.111 9.78 0.00 42.09 5.01
1401 1411 2.203070 GTAGGCGGCCAGGACATG 60.203 66.667 23.09 0.00 0.00 3.21
1477 1487 5.643379 ATTGTACCTAGCAAACAATGGTG 57.357 39.130 12.21 0.00 41.14 4.17
1478 1488 4.093472 TGTACCTAGCAAACAATGGTGT 57.907 40.909 0.00 0.00 40.70 4.16
1565 1575 4.602340 TCTCTCTTACAACAACCTCACC 57.398 45.455 0.00 0.00 0.00 4.02
1566 1576 3.005472 TCTCTCTTACAACAACCTCACCG 59.995 47.826 0.00 0.00 0.00 4.94
1567 1577 2.036733 TCTCTTACAACAACCTCACCGG 59.963 50.000 0.00 0.00 39.35 5.28
1568 1578 2.036733 CTCTTACAACAACCTCACCGGA 59.963 50.000 9.46 0.00 36.31 5.14
1617 1627 5.646577 TCTTACTAGCTTGGACACTCTTC 57.353 43.478 0.00 0.00 0.00 2.87
1623 1633 4.199432 AGCTTGGACACTCTTCACATAG 57.801 45.455 0.00 0.00 0.00 2.23
1691 1891 0.670162 CTGGTTTGAGCACCCTTGTG 59.330 55.000 0.00 0.00 45.65 3.33
1860 4237 8.051535 ACATTAGTCTCAATGATCTTCATGGTT 58.948 33.333 3.01 0.00 37.15 3.67
2015 4392 2.430694 GTGCATTATGGGTCCCCTTTTC 59.569 50.000 5.13 0.00 36.94 2.29
2115 4492 2.361757 TGGTTCACCACTGCATTTTCAG 59.638 45.455 0.00 0.00 42.01 3.02
2135 4512 7.664552 TTCAGCAATGGATTTTCTGGATATT 57.335 32.000 0.00 0.00 0.00 1.28
2137 4514 8.081517 TCAGCAATGGATTTTCTGGATATTTT 57.918 30.769 0.00 0.00 0.00 1.82
2159 4536 9.814899 ATTTTCAACAATTCAATATATGGCGAA 57.185 25.926 0.00 0.00 0.00 4.70
2328 4705 1.819903 GAGCTCCAGGACTAGAAACGT 59.180 52.381 0.87 0.00 0.00 3.99
2531 4908 4.445385 CCATTTGTACAGAGCTGCAAAAAC 59.555 41.667 1.02 0.00 34.99 2.43
2732 5109 1.630878 GGATCCATCCCACTGGGTATC 59.369 57.143 14.25 11.96 44.74 2.24
2759 5136 3.196901 ACCTAACAGCAATGACACGGATA 59.803 43.478 0.00 0.00 0.00 2.59
2774 5151 1.343465 CGGATAGCGGTAAGGATTGGT 59.657 52.381 0.00 0.00 0.00 3.67
2855 5232 0.110486 TCACCAAGGGGCAAGAACTC 59.890 55.000 0.00 0.00 37.90 3.01
2875 5252 7.824779 AGAACTCAAGTATGGTGTAGGAATTTC 59.175 37.037 0.00 0.00 0.00 2.17
2955 5332 1.224069 TGCTTCTCTTGACGCACTGC 61.224 55.000 0.00 0.00 41.55 4.40
3004 5382 3.756434 CTGAGCGGTAAAATCCCAGAAAA 59.244 43.478 0.00 0.00 0.00 2.29
3458 5836 8.934507 TTGTCGTTGTTAAATGGAAAAGATTT 57.065 26.923 0.00 0.00 0.00 2.17
3459 5837 8.934507 TGTCGTTGTTAAATGGAAAAGATTTT 57.065 26.923 0.00 0.00 0.00 1.82
3488 5866 4.728882 GCAAGAACAACAGATTAGGCATCG 60.729 45.833 0.00 0.00 36.93 3.84
3534 5912 9.167311 GATCTTAATAAAGAGCTTTGAAGACCA 57.833 33.333 13.91 0.00 44.79 4.02
3547 5925 0.253044 AAGACCAGTGCGGCATACAT 59.747 50.000 5.72 0.00 39.03 2.29
3608 5986 8.103935 TGTACAACAATAATCCTGGTGTATTCA 58.896 33.333 4.20 0.00 45.94 2.57
3620 5998 5.760253 CCTGGTGTATTCACTGGAATATGTC 59.240 44.000 2.29 0.00 45.19 3.06
3625 6003 7.653713 GGTGTATTCACTGGAATATGTCTGTAG 59.346 40.741 2.29 0.00 45.19 2.74
3646 6024 6.883756 TGTAGTACTTGGCAATCATCATTTGA 59.116 34.615 0.00 0.00 39.12 2.69
3680 6058 8.846943 TTTTGTGTTCTGTGAGTCATATATGT 57.153 30.769 12.42 0.00 0.00 2.29
3681 6059 9.936759 TTTTGTGTTCTGTGAGTCATATATGTA 57.063 29.630 12.42 0.00 0.00 2.29
3682 6060 8.926715 TTGTGTTCTGTGAGTCATATATGTAC 57.073 34.615 12.42 9.30 0.00 2.90
3683 6061 8.293699 TGTGTTCTGTGAGTCATATATGTACT 57.706 34.615 12.42 13.38 0.00 2.73
3684 6062 9.403583 TGTGTTCTGTGAGTCATATATGTACTA 57.596 33.333 12.42 0.96 0.00 1.82
3685 6063 9.666626 GTGTTCTGTGAGTCATATATGTACTAC 57.333 37.037 12.42 3.65 0.00 2.73
3686 6064 9.403583 TGTTCTGTGAGTCATATATGTACTACA 57.596 33.333 12.42 12.08 0.00 2.74
3687 6065 9.666626 GTTCTGTGAGTCATATATGTACTACAC 57.333 37.037 12.42 18.63 0.00 2.90
3688 6066 9.628500 TTCTGTGAGTCATATATGTACTACACT 57.372 33.333 24.08 17.12 0.00 3.55
3689 6067 9.628500 TCTGTGAGTCATATATGTACTACACTT 57.372 33.333 24.08 8.84 0.00 3.16
3690 6068 9.885934 CTGTGAGTCATATATGTACTACACTTC 57.114 37.037 24.08 15.07 0.00 3.01
3691 6069 9.403583 TGTGAGTCATATATGTACTACACTTCA 57.596 33.333 24.08 16.35 0.00 3.02
3722 6100 6.607004 TTCTAGAGAAGAAAAGACGGGAAT 57.393 37.500 0.00 0.00 41.35 3.01
3723 6101 7.713734 TTCTAGAGAAGAAAAGACGGGAATA 57.286 36.000 0.00 0.00 41.35 1.75
3724 6102 7.899648 TCTAGAGAAGAAAAGACGGGAATAT 57.100 36.000 0.00 0.00 0.00 1.28
3725 6103 7.717568 TCTAGAGAAGAAAAGACGGGAATATG 58.282 38.462 0.00 0.00 0.00 1.78
3726 6104 5.119694 AGAGAAGAAAAGACGGGAATATGC 58.880 41.667 0.00 0.00 0.00 3.14
3727 6105 4.843728 AGAAGAAAAGACGGGAATATGCA 58.156 39.130 0.00 0.00 0.00 3.96
3728 6106 5.440610 AGAAGAAAAGACGGGAATATGCAT 58.559 37.500 3.79 3.79 0.00 3.96
3729 6107 5.297776 AGAAGAAAAGACGGGAATATGCATG 59.702 40.000 10.16 0.00 0.00 4.06
3730 6108 4.526970 AGAAAAGACGGGAATATGCATGT 58.473 39.130 10.16 0.00 0.00 3.21
3731 6109 5.680619 AGAAAAGACGGGAATATGCATGTA 58.319 37.500 10.16 0.00 0.00 2.29
3732 6110 6.299141 AGAAAAGACGGGAATATGCATGTAT 58.701 36.000 10.16 0.82 0.00 2.29
3733 6111 6.772716 AGAAAAGACGGGAATATGCATGTATT 59.227 34.615 10.16 1.28 0.00 1.89
3734 6112 7.936847 AGAAAAGACGGGAATATGCATGTATTA 59.063 33.333 10.16 0.00 0.00 0.98
3735 6113 8.458573 AAAAGACGGGAATATGCATGTATTAA 57.541 30.769 10.16 0.00 0.00 1.40
3736 6114 7.435068 AAGACGGGAATATGCATGTATTAAC 57.565 36.000 10.16 0.00 0.00 2.01
3737 6115 5.938125 AGACGGGAATATGCATGTATTAACC 59.062 40.000 10.16 7.29 0.00 2.85
3738 6116 5.007682 ACGGGAATATGCATGTATTAACCC 58.992 41.667 10.16 16.04 30.33 4.11
3739 6117 4.094294 CGGGAATATGCATGTATTAACCCG 59.906 45.833 25.68 25.68 41.32 5.28
3740 6118 4.142469 GGGAATATGCATGTATTAACCCGC 60.142 45.833 10.16 0.00 0.00 6.13
3741 6119 4.457603 GGAATATGCATGTATTAACCCGCA 59.542 41.667 10.16 0.00 36.54 5.69
3742 6120 5.048364 GGAATATGCATGTATTAACCCGCAA 60.048 40.000 10.16 0.00 35.95 4.85
3743 6121 6.398234 AATATGCATGTATTAACCCGCAAA 57.602 33.333 10.16 0.00 35.95 3.68
3744 6122 4.727507 ATGCATGTATTAACCCGCAAAA 57.272 36.364 0.00 0.00 35.95 2.44
3745 6123 4.521130 TGCATGTATTAACCCGCAAAAA 57.479 36.364 0.00 0.00 31.12 1.94
3769 6147 7.719689 AAAAAGAATGTATTACGCGTGAATG 57.280 32.000 24.59 0.00 0.00 2.67
3770 6148 4.452890 AGAATGTATTACGCGTGAATGC 57.547 40.909 24.59 19.26 0.00 3.56
3771 6149 3.868661 AGAATGTATTACGCGTGAATGCA 59.131 39.130 24.59 23.54 34.12 3.96
3772 6150 4.511454 AGAATGTATTACGCGTGAATGCAT 59.489 37.500 24.59 24.50 40.13 3.96
3773 6151 5.694458 AGAATGTATTACGCGTGAATGCATA 59.306 36.000 27.28 10.02 38.27 3.14
3774 6152 4.702247 TGTATTACGCGTGAATGCATAC 57.298 40.909 24.59 13.03 34.15 2.39
3775 6153 4.113354 TGTATTACGCGTGAATGCATACA 58.887 39.130 24.59 15.56 32.26 2.29
3776 6154 3.859745 ATTACGCGTGAATGCATACAG 57.140 42.857 24.59 0.00 34.15 2.74
3777 6155 2.570442 TACGCGTGAATGCATACAGA 57.430 45.000 24.59 0.00 34.15 3.41
3778 6156 0.999406 ACGCGTGAATGCATACAGAC 59.001 50.000 12.93 0.00 34.15 3.51
3779 6157 0.998669 CGCGTGAATGCATACAGACA 59.001 50.000 0.00 0.00 34.15 3.41
3780 6158 1.594397 CGCGTGAATGCATACAGACAT 59.406 47.619 0.00 0.00 34.15 3.06
3781 6159 2.030823 CGCGTGAATGCATACAGACATT 59.969 45.455 0.00 0.00 39.16 2.71
3786 6164 4.125912 GAATGCATACAGACATTCTCGC 57.874 45.455 0.00 0.00 45.59 5.03
3787 6165 2.671130 TGCATACAGACATTCTCGCA 57.329 45.000 0.00 0.00 0.00 5.10
3788 6166 2.971307 TGCATACAGACATTCTCGCAA 58.029 42.857 0.00 0.00 0.00 4.85
3789 6167 3.333804 TGCATACAGACATTCTCGCAAA 58.666 40.909 0.00 0.00 0.00 3.68
3790 6168 3.750652 TGCATACAGACATTCTCGCAAAA 59.249 39.130 0.00 0.00 0.00 2.44
3791 6169 4.215185 TGCATACAGACATTCTCGCAAAAA 59.785 37.500 0.00 0.00 0.00 1.94
3792 6170 4.790140 GCATACAGACATTCTCGCAAAAAG 59.210 41.667 0.00 0.00 0.00 2.27
3793 6171 5.390885 GCATACAGACATTCTCGCAAAAAGA 60.391 40.000 0.00 0.00 0.00 2.52
3794 6172 6.602179 CATACAGACATTCTCGCAAAAAGAA 58.398 36.000 0.00 0.00 37.18 2.52
3795 6173 5.695851 ACAGACATTCTCGCAAAAAGAAT 57.304 34.783 0.00 0.00 42.74 2.40
3804 6182 6.676237 TCTCGCAAAAAGAATGCATACATA 57.324 33.333 0.00 0.00 44.01 2.29
3971 6349 3.053019 TCCATATGATGAAGGGGTGCAAA 60.053 43.478 3.65 0.00 0.00 3.68
4099 6477 2.813908 GTCGTCGCCGCCATCTTT 60.814 61.111 0.00 0.00 0.00 2.52
4120 6498 3.974719 TCACTAGTCCATCTTCAGAGCT 58.025 45.455 0.00 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.520120 CGGCGATGCATCACAGTCT 60.520 57.895 25.70 0.00 0.00 3.24
1 2 1.485838 CTCGGCGATGCATCACAGTC 61.486 60.000 25.70 10.72 0.00 3.51
2 3 1.520120 CTCGGCGATGCATCACAGT 60.520 57.895 25.70 0.00 0.00 3.55
3 4 1.227060 TCTCGGCGATGCATCACAG 60.227 57.895 25.70 17.05 0.00 3.66
5 6 2.580470 CGTCTCGGCGATGCATCAC 61.580 63.158 25.70 16.60 0.00 3.06
6 7 2.278792 CGTCTCGGCGATGCATCA 60.279 61.111 25.70 5.90 0.00 3.07
7 8 2.013483 CTCGTCTCGGCGATGCATC 61.013 63.158 17.10 17.10 40.29 3.91
8 9 2.026734 CTCGTCTCGGCGATGCAT 59.973 61.111 11.27 0.00 40.29 3.96
9 10 4.193334 CCTCGTCTCGGCGATGCA 62.193 66.667 11.27 0.00 40.29 3.96
15 16 4.539881 GTCTCGCCTCGTCTCGGC 62.540 72.222 0.00 0.00 44.11 5.54
16 17 4.225340 CGTCTCGCCTCGTCTCGG 62.225 72.222 0.00 0.00 0.00 4.63
28 29 2.753966 TACGGCAGGTACGCGTCTC 61.754 63.158 18.63 10.75 34.00 3.36
29 30 2.747460 TACGGCAGGTACGCGTCT 60.747 61.111 18.63 4.34 34.00 4.18
30 31 2.577911 GTACGGCAGGTACGCGTC 60.578 66.667 18.63 7.69 41.91 5.19
35 36 2.222911 GTCTATCTCGTACGGCAGGTAC 59.777 54.545 16.52 4.32 46.54 3.34
36 37 2.487934 GTCTATCTCGTACGGCAGGTA 58.512 52.381 16.52 6.11 0.00 3.08
37 38 1.307097 GTCTATCTCGTACGGCAGGT 58.693 55.000 16.52 5.13 0.00 4.00
38 39 0.592148 GGTCTATCTCGTACGGCAGG 59.408 60.000 16.52 3.93 0.00 4.85
39 40 1.532007 GAGGTCTATCTCGTACGGCAG 59.468 57.143 16.52 6.53 0.00 4.85
40 41 1.140452 AGAGGTCTATCTCGTACGGCA 59.860 52.381 16.52 2.13 38.71 5.69
41 42 1.532007 CAGAGGTCTATCTCGTACGGC 59.468 57.143 16.52 0.00 38.71 5.68
42 43 2.801679 GTCAGAGGTCTATCTCGTACGG 59.198 54.545 16.52 6.42 38.71 4.02
43 44 2.472115 CGTCAGAGGTCTATCTCGTACG 59.528 54.545 9.53 9.53 38.93 3.67
44 45 3.245754 CACGTCAGAGGTCTATCTCGTAC 59.754 52.174 0.00 0.00 38.71 3.67
45 46 3.131755 TCACGTCAGAGGTCTATCTCGTA 59.868 47.826 0.00 0.00 38.71 3.43
46 47 2.093606 TCACGTCAGAGGTCTATCTCGT 60.094 50.000 0.00 0.00 38.71 4.18
47 48 2.542178 CTCACGTCAGAGGTCTATCTCG 59.458 54.545 0.00 0.00 38.71 4.04
48 49 3.799366 TCTCACGTCAGAGGTCTATCTC 58.201 50.000 3.33 0.00 36.30 2.75
49 50 3.804036 CTCTCACGTCAGAGGTCTATCT 58.196 50.000 8.85 0.00 36.94 1.98
57 58 4.383850 AATGAATCCTCTCACGTCAGAG 57.616 45.455 9.85 9.85 39.89 3.35
58 59 4.808414 AAATGAATCCTCTCACGTCAGA 57.192 40.909 0.00 0.00 0.00 3.27
59 60 4.331168 GGAAAATGAATCCTCTCACGTCAG 59.669 45.833 0.00 0.00 33.98 3.51
60 61 4.253685 GGAAAATGAATCCTCTCACGTCA 58.746 43.478 0.00 0.00 33.98 4.35
61 62 4.093556 GTGGAAAATGAATCCTCTCACGTC 59.906 45.833 0.00 0.00 37.85 4.34
62 63 4.003648 GTGGAAAATGAATCCTCTCACGT 58.996 43.478 0.00 0.00 37.85 4.49
63 64 4.002982 TGTGGAAAATGAATCCTCTCACG 58.997 43.478 0.00 0.00 37.85 4.35
64 65 5.964958 TTGTGGAAAATGAATCCTCTCAC 57.035 39.130 0.00 0.00 37.85 3.51
65 66 5.355071 CGATTGTGGAAAATGAATCCTCTCA 59.645 40.000 0.00 0.00 37.85 3.27
66 67 5.355350 ACGATTGTGGAAAATGAATCCTCTC 59.645 40.000 0.00 0.00 37.85 3.20
67 68 5.256474 ACGATTGTGGAAAATGAATCCTCT 58.744 37.500 0.00 0.00 37.85 3.69
68 69 5.567138 ACGATTGTGGAAAATGAATCCTC 57.433 39.130 0.00 0.00 37.85 3.71
69 70 5.982890 AACGATTGTGGAAAATGAATCCT 57.017 34.783 0.00 0.00 37.85 3.24
70 71 9.450807 CTTATAACGATTGTGGAAAATGAATCC 57.549 33.333 0.00 0.00 37.48 3.01
74 75 9.104965 CCTACTTATAACGATTGTGGAAAATGA 57.895 33.333 0.00 0.00 0.00 2.57
75 76 9.104965 TCCTACTTATAACGATTGTGGAAAATG 57.895 33.333 0.00 0.00 0.00 2.32
76 77 9.106070 GTCCTACTTATAACGATTGTGGAAAAT 57.894 33.333 0.00 0.00 0.00 1.82
77 78 8.316214 AGTCCTACTTATAACGATTGTGGAAAA 58.684 33.333 0.00 0.00 0.00 2.29
78 79 7.762615 CAGTCCTACTTATAACGATTGTGGAAA 59.237 37.037 0.00 0.00 0.00 3.13
79 80 7.262772 CAGTCCTACTTATAACGATTGTGGAA 58.737 38.462 0.00 0.00 0.00 3.53
80 81 6.183360 CCAGTCCTACTTATAACGATTGTGGA 60.183 42.308 0.00 0.00 0.00 4.02
81 82 5.983720 CCAGTCCTACTTATAACGATTGTGG 59.016 44.000 0.00 0.00 0.00 4.17
82 83 6.696148 GTCCAGTCCTACTTATAACGATTGTG 59.304 42.308 0.00 0.00 0.00 3.33
83 84 6.379133 TGTCCAGTCCTACTTATAACGATTGT 59.621 38.462 0.00 0.00 0.00 2.71
84 85 6.802608 TGTCCAGTCCTACTTATAACGATTG 58.197 40.000 0.00 0.00 0.00 2.67
85 86 7.414222 TTGTCCAGTCCTACTTATAACGATT 57.586 36.000 0.00 0.00 0.00 3.34
86 87 7.506261 AGATTGTCCAGTCCTACTTATAACGAT 59.494 37.037 0.00 0.00 0.00 3.73
87 88 6.832384 AGATTGTCCAGTCCTACTTATAACGA 59.168 38.462 0.00 0.00 0.00 3.85
88 89 6.918569 CAGATTGTCCAGTCCTACTTATAACG 59.081 42.308 0.00 0.00 0.00 3.18
89 90 6.702282 GCAGATTGTCCAGTCCTACTTATAAC 59.298 42.308 0.00 0.00 0.00 1.89
90 91 6.183360 GGCAGATTGTCCAGTCCTACTTATAA 60.183 42.308 0.00 0.00 0.00 0.98
91 92 5.304614 GGCAGATTGTCCAGTCCTACTTATA 59.695 44.000 0.00 0.00 0.00 0.98
92 93 4.101741 GGCAGATTGTCCAGTCCTACTTAT 59.898 45.833 0.00 0.00 0.00 1.73
93 94 3.451178 GGCAGATTGTCCAGTCCTACTTA 59.549 47.826 0.00 0.00 0.00 2.24
94 95 2.237392 GGCAGATTGTCCAGTCCTACTT 59.763 50.000 0.00 0.00 0.00 2.24
95 96 1.834263 GGCAGATTGTCCAGTCCTACT 59.166 52.381 0.00 0.00 0.00 2.57
96 97 1.134371 GGGCAGATTGTCCAGTCCTAC 60.134 57.143 0.00 0.00 42.98 3.18
97 98 1.204146 GGGCAGATTGTCCAGTCCTA 58.796 55.000 0.00 0.00 42.98 2.94
98 99 1.903877 CGGGCAGATTGTCCAGTCCT 61.904 60.000 0.18 0.00 43.88 3.85
99 100 1.450312 CGGGCAGATTGTCCAGTCC 60.450 63.158 0.18 0.00 43.88 3.85
100 101 2.109126 GCGGGCAGATTGTCCAGTC 61.109 63.158 0.18 0.00 43.88 3.51
101 102 2.045926 GCGGGCAGATTGTCCAGT 60.046 61.111 0.18 0.00 43.88 4.00
102 103 2.046023 TGCGGGCAGATTGTCCAG 60.046 61.111 0.18 0.00 43.88 3.86
103 104 1.549243 TAGTGCGGGCAGATTGTCCA 61.549 55.000 0.18 0.00 43.88 4.02
104 105 0.811616 CTAGTGCGGGCAGATTGTCC 60.812 60.000 0.00 0.00 39.19 4.02
105 106 0.108138 ACTAGTGCGGGCAGATTGTC 60.108 55.000 0.00 0.00 0.00 3.18
106 107 0.324943 AACTAGTGCGGGCAGATTGT 59.675 50.000 0.00 0.00 0.00 2.71
107 108 2.205074 CTAACTAGTGCGGGCAGATTG 58.795 52.381 0.00 0.00 0.00 2.67
108 109 1.831736 ACTAACTAGTGCGGGCAGATT 59.168 47.619 0.00 0.00 34.72 2.40
109 110 1.486211 ACTAACTAGTGCGGGCAGAT 58.514 50.000 0.00 0.00 34.72 2.90
110 111 1.263356 AACTAACTAGTGCGGGCAGA 58.737 50.000 0.00 0.00 36.50 4.26
111 112 2.165845 ACTAACTAACTAGTGCGGGCAG 59.834 50.000 0.00 0.00 36.50 4.85
112 113 2.094390 CACTAACTAACTAGTGCGGGCA 60.094 50.000 0.00 0.00 41.65 5.36
113 114 2.537401 CACTAACTAACTAGTGCGGGC 58.463 52.381 0.00 0.00 41.65 6.13
114 115 2.159142 CCCACTAACTAACTAGTGCGGG 60.159 54.545 0.00 0.00 45.01 6.13
115 116 2.756760 TCCCACTAACTAACTAGTGCGG 59.243 50.000 0.00 8.05 45.01 5.69
116 117 3.693085 TCTCCCACTAACTAACTAGTGCG 59.307 47.826 0.00 0.00 45.01 5.34
117 118 4.142204 GGTCTCCCACTAACTAACTAGTGC 60.142 50.000 0.00 0.00 45.01 4.40
118 119 4.096081 CGGTCTCCCACTAACTAACTAGTG 59.904 50.000 0.00 4.17 45.64 2.74
119 120 4.268359 CGGTCTCCCACTAACTAACTAGT 58.732 47.826 0.00 0.00 38.39 2.57
120 121 3.631227 CCGGTCTCCCACTAACTAACTAG 59.369 52.174 0.00 0.00 0.00 2.57
121 122 3.624777 CCGGTCTCCCACTAACTAACTA 58.375 50.000 0.00 0.00 0.00 2.24
122 123 2.454538 CCGGTCTCCCACTAACTAACT 58.545 52.381 0.00 0.00 0.00 2.24
123 124 1.134877 GCCGGTCTCCCACTAACTAAC 60.135 57.143 1.90 0.00 0.00 2.34
124 125 1.188863 GCCGGTCTCCCACTAACTAA 58.811 55.000 1.90 0.00 0.00 2.24
125 126 1.033746 CGCCGGTCTCCCACTAACTA 61.034 60.000 1.90 0.00 0.00 2.24
126 127 2.348888 CGCCGGTCTCCCACTAACT 61.349 63.158 1.90 0.00 0.00 2.24
127 128 2.183555 CGCCGGTCTCCCACTAAC 59.816 66.667 1.90 0.00 0.00 2.34
128 129 3.072468 CCGCCGGTCTCCCACTAA 61.072 66.667 1.90 0.00 0.00 2.24
133 134 4.222847 CTAAGCCGCCGGTCTCCC 62.223 72.222 4.45 0.00 0.00 4.30
134 135 4.222847 CCTAAGCCGCCGGTCTCC 62.223 72.222 4.45 0.00 0.00 3.71
135 136 3.140225 CTCCTAAGCCGCCGGTCTC 62.140 68.421 4.45 0.00 0.00 3.36
136 137 3.148279 CTCCTAAGCCGCCGGTCT 61.148 66.667 4.45 0.00 0.00 3.85
137 138 3.140225 CTCTCCTAAGCCGCCGGTC 62.140 68.421 4.45 0.00 0.00 4.79
138 139 3.148279 CTCTCCTAAGCCGCCGGT 61.148 66.667 4.45 0.00 0.00 5.28
139 140 2.833582 TCTCTCCTAAGCCGCCGG 60.834 66.667 0.00 0.00 0.00 6.13
140 141 2.725008 CTCTCTCCTAAGCCGCCG 59.275 66.667 0.00 0.00 0.00 6.46
141 142 2.362329 CTGCTCTCTCCTAAGCCGCC 62.362 65.000 0.00 0.00 37.73 6.13
142 143 1.067250 CTGCTCTCTCCTAAGCCGC 59.933 63.158 0.00 0.00 37.73 6.53
143 144 0.667993 CTCTGCTCTCTCCTAAGCCG 59.332 60.000 0.00 0.00 37.73 5.52
144 145 1.681264 GTCTCTGCTCTCTCCTAAGCC 59.319 57.143 0.00 0.00 37.73 4.35
145 146 1.681264 GGTCTCTGCTCTCTCCTAAGC 59.319 57.143 0.00 0.00 39.02 3.09
146 147 3.011566 TGGTCTCTGCTCTCTCCTAAG 57.988 52.381 0.00 0.00 0.00 2.18
147 148 3.295093 CATGGTCTCTGCTCTCTCCTAA 58.705 50.000 0.00 0.00 0.00 2.69
148 149 2.424091 CCATGGTCTCTGCTCTCTCCTA 60.424 54.545 2.57 0.00 0.00 2.94
149 150 1.688942 CCATGGTCTCTGCTCTCTCCT 60.689 57.143 2.57 0.00 0.00 3.69
150 151 0.752054 CCATGGTCTCTGCTCTCTCC 59.248 60.000 2.57 0.00 0.00 3.71
151 152 0.104671 GCCATGGTCTCTGCTCTCTC 59.895 60.000 14.67 0.00 0.00 3.20
152 153 1.674764 CGCCATGGTCTCTGCTCTCT 61.675 60.000 14.67 0.00 0.00 3.10
153 154 1.227205 CGCCATGGTCTCTGCTCTC 60.227 63.158 14.67 0.00 0.00 3.20
154 155 1.683707 TCGCCATGGTCTCTGCTCT 60.684 57.895 14.67 0.00 0.00 4.09
155 156 1.520342 GTCGCCATGGTCTCTGCTC 60.520 63.158 14.67 0.00 0.00 4.26
156 157 2.581354 GTCGCCATGGTCTCTGCT 59.419 61.111 14.67 0.00 0.00 4.24
157 158 2.512515 GGTCGCCATGGTCTCTGC 60.513 66.667 14.67 0.00 0.00 4.26
158 159 2.187946 GGGTCGCCATGGTCTCTG 59.812 66.667 14.67 0.00 0.00 3.35
159 160 3.083997 GGGGTCGCCATGGTCTCT 61.084 66.667 14.67 0.00 0.00 3.10
160 161 2.670148 AAGGGGTCGCCATGGTCTC 61.670 63.158 14.67 4.35 0.00 3.36
161 162 2.610859 AAGGGGTCGCCATGGTCT 60.611 61.111 14.67 0.00 0.00 3.85
162 163 1.906105 TACAAGGGGTCGCCATGGTC 61.906 60.000 14.67 4.79 0.00 4.02
163 164 1.921346 TACAAGGGGTCGCCATGGT 60.921 57.895 14.67 8.76 0.00 3.55
164 165 1.451387 GTACAAGGGGTCGCCATGG 60.451 63.158 14.81 7.63 0.00 3.66
165 166 1.451387 GGTACAAGGGGTCGCCATG 60.451 63.158 8.89 9.18 0.00 3.66
166 167 1.910580 CTGGTACAAGGGGTCGCCAT 61.911 60.000 8.89 0.00 38.70 4.40
167 168 2.527123 TGGTACAAGGGGTCGCCA 60.527 61.111 8.89 0.00 33.83 5.69
168 169 2.267961 CTGGTACAAGGGGTCGCC 59.732 66.667 0.00 0.00 38.70 5.54
169 170 1.079336 GACTGGTACAAGGGGTCGC 60.079 63.158 1.45 0.00 38.70 5.19
170 171 1.595357 GGACTGGTACAAGGGGTCG 59.405 63.158 1.45 0.00 38.70 4.79
171 172 1.595357 CGGACTGGTACAAGGGGTC 59.405 63.158 1.45 0.00 38.70 4.46
172 173 2.590114 GCGGACTGGTACAAGGGGT 61.590 63.158 1.45 0.00 38.70 4.95
173 174 2.267961 GCGGACTGGTACAAGGGG 59.732 66.667 1.45 0.00 38.70 4.79
174 175 1.910580 ATGGCGGACTGGTACAAGGG 61.911 60.000 1.45 0.00 38.70 3.95
175 176 0.744414 CATGGCGGACTGGTACAAGG 60.744 60.000 1.45 0.00 38.70 3.61
176 177 0.744414 CCATGGCGGACTGGTACAAG 60.744 60.000 0.00 0.00 34.68 3.16
177 178 1.298340 CCATGGCGGACTGGTACAA 59.702 57.895 0.00 0.00 34.68 2.41
178 179 2.665089 CCCATGGCGGACTGGTACA 61.665 63.158 6.09 0.00 36.56 2.90
179 180 2.189521 CCCATGGCGGACTGGTAC 59.810 66.667 6.09 0.00 36.56 3.34
180 181 1.906105 GAACCCATGGCGGACTGGTA 61.906 60.000 6.09 0.00 36.56 3.25
181 182 3.256960 AACCCATGGCGGACTGGT 61.257 61.111 6.09 0.00 36.56 4.00
182 183 2.438434 GAACCCATGGCGGACTGG 60.438 66.667 6.09 0.00 36.56 4.00
183 184 2.040544 GTGAACCCATGGCGGACTG 61.041 63.158 6.09 0.00 36.56 3.51
184 185 2.351276 GTGAACCCATGGCGGACT 59.649 61.111 6.09 0.00 36.56 3.85
185 186 2.750237 GGTGAACCCATGGCGGAC 60.750 66.667 6.09 0.00 36.56 4.79
186 187 4.402528 CGGTGAACCCATGGCGGA 62.403 66.667 6.09 0.00 36.56 5.54
188 189 4.715523 ACCGGTGAACCCATGGCG 62.716 66.667 6.12 2.90 0.00 5.69
189 190 2.750237 GACCGGTGAACCCATGGC 60.750 66.667 14.63 0.00 0.00 4.40
190 191 2.045340 GGACCGGTGAACCCATGG 60.045 66.667 14.63 4.14 0.00 3.66
191 192 2.435938 CGGACCGGTGAACCCATG 60.436 66.667 14.63 0.00 0.00 3.66
192 193 3.712907 CCGGACCGGTGAACCCAT 61.713 66.667 25.54 0.00 42.73 4.00
202 203 1.164041 ACTTTGACTTTGCCGGACCG 61.164 55.000 5.05 6.99 0.00 4.79
203 204 0.310854 CACTTTGACTTTGCCGGACC 59.689 55.000 5.05 0.00 0.00 4.46
204 205 0.317854 GCACTTTGACTTTGCCGGAC 60.318 55.000 5.05 0.00 0.00 4.79
205 206 1.781025 CGCACTTTGACTTTGCCGGA 61.781 55.000 5.05 0.00 32.31 5.14
206 207 1.370414 CGCACTTTGACTTTGCCGG 60.370 57.895 0.00 0.00 32.31 6.13
207 208 1.370414 CCGCACTTTGACTTTGCCG 60.370 57.895 0.00 0.00 32.31 5.69
208 209 1.661509 GCCGCACTTTGACTTTGCC 60.662 57.895 0.00 0.00 32.31 4.52
209 210 0.249031 AAGCCGCACTTTGACTTTGC 60.249 50.000 0.00 0.00 33.71 3.68
210 211 1.065401 TGAAGCCGCACTTTGACTTTG 59.935 47.619 0.00 0.00 39.29 2.77
211 212 1.065551 GTGAAGCCGCACTTTGACTTT 59.934 47.619 0.00 0.00 39.29 2.66
212 213 0.663153 GTGAAGCCGCACTTTGACTT 59.337 50.000 0.00 0.00 39.29 3.01
213 214 1.498865 CGTGAAGCCGCACTTTGACT 61.499 55.000 5.20 0.00 39.29 3.41
214 215 1.082756 CGTGAAGCCGCACTTTGAC 60.083 57.895 5.20 0.00 39.29 3.18
215 216 0.602638 ATCGTGAAGCCGCACTTTGA 60.603 50.000 5.20 0.00 39.29 2.69
216 217 0.453282 CATCGTGAAGCCGCACTTTG 60.453 55.000 5.20 0.00 39.29 2.77
217 218 1.577328 CCATCGTGAAGCCGCACTTT 61.577 55.000 5.20 0.00 39.29 2.66
218 219 2.034879 CCATCGTGAAGCCGCACTT 61.035 57.895 5.20 0.00 42.98 3.16
219 220 2.434884 CCATCGTGAAGCCGCACT 60.435 61.111 5.20 0.00 36.65 4.40
220 221 4.166011 GCCATCGTGAAGCCGCAC 62.166 66.667 0.00 0.00 35.46 5.34
221 222 4.393155 AGCCATCGTGAAGCCGCA 62.393 61.111 0.00 0.00 0.00 5.69
222 223 3.869272 CAGCCATCGTGAAGCCGC 61.869 66.667 0.00 0.00 0.00 6.53
223 224 3.869272 GCAGCCATCGTGAAGCCG 61.869 66.667 0.00 0.00 0.00 5.52
224 225 2.747460 TGCAGCCATCGTGAAGCC 60.747 61.111 0.00 0.00 0.00 4.35
225 226 2.482374 GTGCAGCCATCGTGAAGC 59.518 61.111 0.00 0.00 0.00 3.86
226 227 1.959899 GACGTGCAGCCATCGTGAAG 61.960 60.000 3.86 0.00 37.92 3.02
227 228 2.027073 GACGTGCAGCCATCGTGAA 61.027 57.895 3.86 0.00 37.92 3.18
228 229 2.432456 GACGTGCAGCCATCGTGA 60.432 61.111 3.86 0.00 37.92 4.35
229 230 3.490759 GGACGTGCAGCCATCGTG 61.491 66.667 0.63 0.00 37.92 4.35
238 239 1.868987 TTAGCTAGTGCGGACGTGCA 61.869 55.000 23.21 1.42 45.42 4.57
239 240 1.140407 CTTAGCTAGTGCGGACGTGC 61.140 60.000 16.50 16.50 45.42 5.34
240 241 0.450583 TCTTAGCTAGTGCGGACGTG 59.549 55.000 0.00 0.00 45.42 4.49
241 242 1.171308 TTCTTAGCTAGTGCGGACGT 58.829 50.000 0.00 0.00 45.42 4.34
242 243 2.273370 TTTCTTAGCTAGTGCGGACG 57.727 50.000 0.00 0.00 45.42 4.79
243 244 3.309954 CCAATTTCTTAGCTAGTGCGGAC 59.690 47.826 0.00 0.00 45.42 4.79
244 245 3.055385 ACCAATTTCTTAGCTAGTGCGGA 60.055 43.478 0.00 0.00 45.42 5.54
245 246 3.270877 ACCAATTTCTTAGCTAGTGCGG 58.729 45.455 0.00 0.00 45.42 5.69
246 247 4.184629 AGACCAATTTCTTAGCTAGTGCG 58.815 43.478 0.00 0.00 45.42 5.34
247 248 4.572795 GGAGACCAATTTCTTAGCTAGTGC 59.427 45.833 0.00 0.00 40.05 4.40
248 249 5.734720 TGGAGACCAATTTCTTAGCTAGTG 58.265 41.667 0.00 0.00 0.00 2.74
249 250 6.156949 TGATGGAGACCAATTTCTTAGCTAGT 59.843 38.462 0.00 0.00 36.95 2.57
250 251 6.586344 TGATGGAGACCAATTTCTTAGCTAG 58.414 40.000 0.00 0.00 36.95 3.42
251 252 6.560003 TGATGGAGACCAATTTCTTAGCTA 57.440 37.500 0.00 0.00 36.95 3.32
252 253 5.441718 TGATGGAGACCAATTTCTTAGCT 57.558 39.130 0.00 0.00 36.95 3.32
253 254 7.521261 GCTTATGATGGAGACCAATTTCTTAGC 60.521 40.741 0.00 0.00 36.95 3.09
295 296 1.553248 CGGTGGTGGTAGAGATGGAAA 59.447 52.381 0.00 0.00 0.00 3.13
381 388 3.860930 AATTTGGTGGCGGCGAGGT 62.861 57.895 12.98 0.00 0.00 3.85
384 391 0.321741 TAAGAATTTGGTGGCGGCGA 60.322 50.000 12.98 0.00 0.00 5.54
459 469 2.583593 GCAGATCGGCCGTCTGAC 60.584 66.667 38.66 30.11 44.57 3.51
472 482 4.074526 GCTCCTCAGGCACGCAGA 62.075 66.667 0.00 0.00 0.00 4.26
536 546 4.467107 AGGAGGCGAGGAGTCCCC 62.467 72.222 5.25 0.00 0.00 4.81
586 596 1.376683 GGTTGCTGCACCGGACATA 60.377 57.895 9.46 0.00 0.00 2.29
756 766 2.838693 GGGGAGCCCTCGAGGTAC 60.839 72.222 29.25 20.60 41.34 3.34
927 937 3.691744 GAGGTCTGACGAGCGCAGG 62.692 68.421 11.47 2.47 42.35 4.85
928 938 2.202544 GAGGTCTGACGAGCGCAG 60.203 66.667 11.47 5.62 42.35 5.18
966 976 4.827087 CTGAGGTGCCGCAGCGAT 62.827 66.667 18.75 0.14 44.31 4.58
1052 1062 2.433970 CAGGAAGAGAGATGGAGGGTTC 59.566 54.545 0.00 0.00 0.00 3.62
1056 1066 1.688197 GAGCAGGAAGAGAGATGGAGG 59.312 57.143 0.00 0.00 0.00 4.30
1060 1070 0.746063 AGCGAGCAGGAAGAGAGATG 59.254 55.000 0.00 0.00 0.00 2.90
1184 1194 0.320771 CACGTTCCAGAACCAGGAGG 60.321 60.000 4.99 0.00 38.03 4.30
1277 1287 5.181748 AGAAATCAAGAATCTCAAGGGACG 58.818 41.667 0.00 0.00 0.00 4.79
1371 1381 3.423179 CCTACGAGGCTCGACTCC 58.577 66.667 40.35 0.46 43.74 3.85
1401 1411 1.514553 GCTTTCCATCAGCTTGCCC 59.485 57.895 0.00 0.00 34.15 5.36
1445 1455 3.885901 TGCTAGGTACAATTGTTGCAACA 59.114 39.130 27.96 27.96 37.08 3.33
1494 1504 4.681483 GTGCCTCAAACTCTTGTAATTTGC 59.319 41.667 0.00 0.00 34.09 3.68
1565 1575 0.666913 ACAACGGTATCGATCCTCCG 59.333 55.000 24.66 24.66 46.98 4.63
1566 1576 1.000496 GGACAACGGTATCGATCCTCC 60.000 57.143 0.34 2.55 40.11 4.30
1567 1577 1.679680 TGGACAACGGTATCGATCCTC 59.320 52.381 0.34 0.00 40.11 3.71
1568 1578 1.771565 TGGACAACGGTATCGATCCT 58.228 50.000 0.34 0.00 40.11 3.24
1617 1627 7.549134 TCCAGTGAGTTTATTGTAAGCTATGTG 59.451 37.037 0.00 0.00 0.00 3.21
1623 1633 6.595716 ACTGATCCAGTGAGTTTATTGTAAGC 59.404 38.462 0.00 0.00 43.63 3.09
1691 1891 1.093159 CAAGGAGATTGCAGGACAGC 58.907 55.000 0.00 0.00 30.65 4.40
1884 4261 5.393461 CCAATGTCTCTAAACTGGCCATTTC 60.393 44.000 5.51 0.00 0.00 2.17
2115 4492 8.606602 GTTGAAAATATCCAGAAAATCCATTGC 58.393 33.333 0.00 0.00 0.00 3.56
2135 4512 9.814899 AATTCGCCATATATTGAATTGTTGAAA 57.185 25.926 12.94 0.00 39.03 2.69
2137 4514 8.800231 CAATTCGCCATATATTGAATTGTTGA 57.200 30.769 22.37 0.00 46.27 3.18
2159 4536 3.222603 GTCCTCCATATTTTCCGGCAAT 58.777 45.455 0.00 0.00 0.00 3.56
2328 4705 3.342719 TGCCATTCGAGAACATAAGCAA 58.657 40.909 0.00 0.00 0.00 3.91
2437 4814 8.277197 TCAAGGATTCCATTCTAGAACATGAAT 58.723 33.333 18.62 18.62 33.69 2.57
2531 4908 2.892852 TGCAAGATCCAAGAAACCCAAG 59.107 45.455 0.00 0.00 0.00 3.61
2732 5109 4.611355 CGTGTCATTGCTGTTAGGTTTGAG 60.611 45.833 0.00 0.00 0.00 3.02
2759 5136 2.579410 ACAAACCAATCCTTACCGCT 57.421 45.000 0.00 0.00 0.00 5.52
2774 5151 4.095782 GCATACGCCTGATAAGGAAACAAA 59.904 41.667 0.00 0.00 0.00 2.83
2855 5232 5.424757 TCCGAAATTCCTACACCATACTTG 58.575 41.667 0.00 0.00 0.00 3.16
2875 5252 3.117491 AGTCAATGCTCACCATATCCG 57.883 47.619 0.00 0.00 32.67 4.18
2955 5332 7.429340 GCGATTCCAAGACACATTTATGTTTAG 59.571 37.037 0.00 0.00 39.39 1.85
3004 5382 3.056080 AGTGACTGTATGGCCCCAATAT 58.944 45.455 0.00 0.00 0.00 1.28
3458 5836 3.558931 TCTGTTGTTCTTGCTCTGGAA 57.441 42.857 0.00 0.00 0.00 3.53
3459 5837 3.777106 ATCTGTTGTTCTTGCTCTGGA 57.223 42.857 0.00 0.00 0.00 3.86
3488 5866 1.389106 CTGTAACGTCGGCTACTTTGC 59.611 52.381 0.00 0.00 0.00 3.68
3534 5912 5.793817 TCAGAATTATATGTATGCCGCACT 58.206 37.500 0.00 0.00 0.00 4.40
3578 5956 5.471797 CACCAGGATTATTGTTGTACACACA 59.528 40.000 0.00 0.69 33.98 3.72
3608 5986 6.407074 GCCAAGTACTACAGACATATTCCAGT 60.407 42.308 0.00 0.00 0.00 4.00
3620 5998 6.932356 AATGATGATTGCCAAGTACTACAG 57.068 37.500 0.00 0.00 0.00 2.74
3625 6003 5.807011 GGTTCAAATGATGATTGCCAAGTAC 59.193 40.000 0.00 0.00 38.03 2.73
3646 6024 5.144100 TCACAGAACACAAAATATGGGGTT 58.856 37.500 0.00 0.00 36.45 4.11
3699 6077 6.607004 ATTCCCGTCTTTTCTTCTCTAGAA 57.393 37.500 0.00 0.00 41.11 2.10
3700 6078 7.684670 GCATATTCCCGTCTTTTCTTCTCTAGA 60.685 40.741 0.00 0.00 0.00 2.43
3701 6079 6.422400 GCATATTCCCGTCTTTTCTTCTCTAG 59.578 42.308 0.00 0.00 0.00 2.43
3702 6080 6.127168 TGCATATTCCCGTCTTTTCTTCTCTA 60.127 38.462 0.00 0.00 0.00 2.43
3703 6081 5.119694 GCATATTCCCGTCTTTTCTTCTCT 58.880 41.667 0.00 0.00 0.00 3.10
3704 6082 4.876107 TGCATATTCCCGTCTTTTCTTCTC 59.124 41.667 0.00 0.00 0.00 2.87
3705 6083 4.843728 TGCATATTCCCGTCTTTTCTTCT 58.156 39.130 0.00 0.00 0.00 2.85
3706 6084 5.066505 ACATGCATATTCCCGTCTTTTCTTC 59.933 40.000 0.00 0.00 0.00 2.87
3707 6085 4.949856 ACATGCATATTCCCGTCTTTTCTT 59.050 37.500 0.00 0.00 0.00 2.52
3708 6086 4.526970 ACATGCATATTCCCGTCTTTTCT 58.473 39.130 0.00 0.00 0.00 2.52
3709 6087 4.900635 ACATGCATATTCCCGTCTTTTC 57.099 40.909 0.00 0.00 0.00 2.29
3710 6088 6.959639 AATACATGCATATTCCCGTCTTTT 57.040 33.333 0.00 0.00 0.00 2.27
3711 6089 7.040686 GGTTAATACATGCATATTCCCGTCTTT 60.041 37.037 0.00 0.00 0.00 2.52
3712 6090 6.430000 GGTTAATACATGCATATTCCCGTCTT 59.570 38.462 0.00 0.00 0.00 3.01
3713 6091 5.938125 GGTTAATACATGCATATTCCCGTCT 59.062 40.000 0.00 0.00 0.00 4.18
3714 6092 5.123344 GGGTTAATACATGCATATTCCCGTC 59.877 44.000 0.00 0.00 0.00 4.79
3715 6093 5.007682 GGGTTAATACATGCATATTCCCGT 58.992 41.667 0.00 0.00 0.00 5.28
3716 6094 4.094294 CGGGTTAATACATGCATATTCCCG 59.906 45.833 19.24 19.24 41.72 5.14
3717 6095 4.142469 GCGGGTTAATACATGCATATTCCC 60.142 45.833 0.00 4.05 30.32 3.97
3718 6096 4.457603 TGCGGGTTAATACATGCATATTCC 59.542 41.667 0.00 0.00 32.97 3.01
3719 6097 5.621197 TGCGGGTTAATACATGCATATTC 57.379 39.130 0.00 0.00 32.97 1.75
3720 6098 6.398234 TTTGCGGGTTAATACATGCATATT 57.602 33.333 0.00 0.00 36.32 1.28
3721 6099 6.398234 TTTTGCGGGTTAATACATGCATAT 57.602 33.333 0.00 0.00 36.32 1.78
3722 6100 5.836821 TTTTGCGGGTTAATACATGCATA 57.163 34.783 0.00 0.00 36.32 3.14
3723 6101 4.727507 TTTTGCGGGTTAATACATGCAT 57.272 36.364 0.00 0.00 36.32 3.96
3724 6102 4.521130 TTTTTGCGGGTTAATACATGCA 57.479 36.364 0.00 0.00 35.14 3.96
3745 6123 6.250527 GCATTCACGCGTAATACATTCTTTTT 59.749 34.615 13.44 0.00 0.00 1.94
3746 6124 5.737290 GCATTCACGCGTAATACATTCTTTT 59.263 36.000 13.44 0.00 0.00 2.27
3747 6125 5.163804 TGCATTCACGCGTAATACATTCTTT 60.164 36.000 13.44 0.00 33.35 2.52
3748 6126 4.331443 TGCATTCACGCGTAATACATTCTT 59.669 37.500 13.44 0.00 33.35 2.52
3749 6127 3.868661 TGCATTCACGCGTAATACATTCT 59.131 39.130 13.44 0.00 33.35 2.40
3750 6128 4.190304 TGCATTCACGCGTAATACATTC 57.810 40.909 13.44 0.00 33.35 2.67
3751 6129 4.811555 ATGCATTCACGCGTAATACATT 57.188 36.364 13.44 0.00 33.35 2.71
3752 6130 4.747605 TGTATGCATTCACGCGTAATACAT 59.252 37.500 13.44 18.62 35.23 2.29
3753 6131 4.113354 TGTATGCATTCACGCGTAATACA 58.887 39.130 13.44 15.46 35.23 2.29
3754 6132 4.443063 TCTGTATGCATTCACGCGTAATAC 59.557 41.667 13.44 13.21 35.23 1.89
3755 6133 4.443063 GTCTGTATGCATTCACGCGTAATA 59.557 41.667 13.44 0.00 35.23 0.98
3756 6134 3.245284 GTCTGTATGCATTCACGCGTAAT 59.755 43.478 13.44 9.73 35.23 1.89
3757 6135 2.601314 GTCTGTATGCATTCACGCGTAA 59.399 45.455 13.44 7.56 35.23 3.18
3758 6136 2.190161 GTCTGTATGCATTCACGCGTA 58.810 47.619 13.44 0.00 32.18 4.42
3759 6137 0.999406 GTCTGTATGCATTCACGCGT 59.001 50.000 5.58 5.58 34.82 6.01
3760 6138 0.998669 TGTCTGTATGCATTCACGCG 59.001 50.000 3.54 3.53 33.35 6.01
3761 6139 3.611517 GAATGTCTGTATGCATTCACGC 58.388 45.455 3.54 0.00 45.98 5.34
3765 6143 3.557185 TGCGAGAATGTCTGTATGCATTC 59.443 43.478 3.54 0.00 46.65 2.67
3766 6144 3.534554 TGCGAGAATGTCTGTATGCATT 58.465 40.909 3.54 0.00 37.94 3.56
3767 6145 3.183793 TGCGAGAATGTCTGTATGCAT 57.816 42.857 3.79 3.79 0.00 3.96
3768 6146 2.671130 TGCGAGAATGTCTGTATGCA 57.329 45.000 0.00 0.00 0.00 3.96
3769 6147 4.340894 TTTTGCGAGAATGTCTGTATGC 57.659 40.909 0.00 0.00 0.00 3.14
3770 6148 6.169419 TCTTTTTGCGAGAATGTCTGTATG 57.831 37.500 0.00 0.00 0.00 2.39
3771 6149 6.801539 TTCTTTTTGCGAGAATGTCTGTAT 57.198 33.333 0.00 0.00 0.00 2.29
3772 6150 6.801539 ATTCTTTTTGCGAGAATGTCTGTA 57.198 33.333 0.00 0.00 41.13 2.74
3773 6151 5.695851 ATTCTTTTTGCGAGAATGTCTGT 57.304 34.783 0.00 0.00 41.13 3.41
3779 6157 5.953183 TGTATGCATTCTTTTTGCGAGAAT 58.047 33.333 3.54 0.00 42.89 2.40
3780 6158 5.369685 TGTATGCATTCTTTTTGCGAGAA 57.630 34.783 3.54 0.00 43.10 2.87
3781 6159 5.565592 ATGTATGCATTCTTTTTGCGAGA 57.434 34.783 3.54 0.00 43.10 4.04
3782 6160 7.919313 AATATGTATGCATTCTTTTTGCGAG 57.081 32.000 3.54 0.00 43.10 5.03
3783 6161 8.700722 AAAATATGTATGCATTCTTTTTGCGA 57.299 26.923 3.54 0.00 43.10 5.10
4099 6477 3.698539 CAGCTCTGAAGATGGACTAGTGA 59.301 47.826 0.00 0.00 35.22 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.