Multiple sequence alignment - TraesCS3D01G422600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G422600 chr3D 100.000 3812 0 0 1 3812 535398782 535402593 0.000000e+00 7040
1 TraesCS3D01G422600 chr3D 87.657 1912 177 36 863 2760 533960402 533958536 0.000000e+00 2169
2 TraesCS3D01G422600 chr3D 86.928 1836 194 35 944 2765 534115381 534117184 0.000000e+00 2019
3 TraesCS3D01G422600 chr3D 81.070 243 43 3 2357 2597 134963071 134962830 1.400000e-44 191
4 TraesCS3D01G422600 chr3B 95.128 2114 83 6 1138 3235 706754647 706756756 0.000000e+00 3315
5 TraesCS3D01G422600 chr3B 94.288 1593 81 4 1681 3267 706185586 706187174 0.000000e+00 2429
6 TraesCS3D01G422600 chr3B 86.902 1901 184 39 885 2765 706029185 706027330 0.000000e+00 2071
7 TraesCS3D01G422600 chr3B 86.143 1898 192 38 885 2765 706182596 706184439 0.000000e+00 1982
8 TraesCS3D01G422600 chr3B 86.382 1241 121 20 1532 2765 706711680 706712879 0.000000e+00 1312
9 TraesCS3D01G422600 chr3B 93.231 325 16 4 827 1145 706753904 706754228 1.240000e-129 473
10 TraesCS3D01G422600 chr3B 85.465 344 35 6 3216 3557 706187170 706187500 1.010000e-90 344
11 TraesCS3D01G422600 chr3B 92.135 178 8 4 3636 3812 706187491 706187663 2.940000e-61 246
12 TraesCS3D01G422600 chr3B 92.771 166 8 3 3216 3378 706756828 706756992 1.770000e-58 237
13 TraesCS3D01G422600 chr3B 81.124 249 37 10 1 244 712574534 712574291 1.400000e-44 191
14 TraesCS3D01G422600 chr3A 93.396 1605 86 10 1665 3267 670545601 670547187 0.000000e+00 2359
15 TraesCS3D01G422600 chr3A 93.365 844 39 5 827 1665 670535421 670536252 0.000000e+00 1232
16 TraesCS3D01G422600 chr3A 94.714 227 11 1 3587 3812 670547506 670547732 6.060000e-93 351
17 TraesCS3D01G422600 chr3A 85.000 340 33 9 3216 3553 670547183 670547506 2.840000e-86 329
18 TraesCS3D01G422600 chr3A 90.556 180 11 4 1 179 705591351 705591525 2.290000e-57 233
19 TraesCS3D01G422600 chr4D 81.423 1518 238 33 1176 2671 98015617 98014122 0.000000e+00 1201
20 TraesCS3D01G422600 chr4D 79.278 1578 256 39 1205 2760 435198925 435197397 0.000000e+00 1037
21 TraesCS3D01G422600 chr4D 78.192 1449 240 55 1176 2597 505358889 505357490 0.000000e+00 856
22 TraesCS3D01G422600 chr4D 79.083 1243 205 40 1375 2593 97962020 97960809 0.000000e+00 804
23 TraesCS3D01G422600 chr4D 78.074 1236 213 41 1375 2593 97969800 97968606 0.000000e+00 728
24 TraesCS3D01G422600 chr4D 78.333 1200 185 43 1582 2760 374041174 374040029 0.000000e+00 706
25 TraesCS3D01G422600 chr4D 83.213 417 66 4 1176 1590 374049412 374048998 2.780000e-101 379
26 TraesCS3D01G422600 chr4D 81.658 398 47 13 1176 1562 418854451 418854069 1.330000e-79 307
27 TraesCS3D01G422600 chr4B 81.787 1444 221 34 1176 2597 139593859 139592436 0.000000e+00 1171
28 TraesCS3D01G422600 chr4B 78.986 1242 209 37 1375 2593 139548785 139547573 0.000000e+00 800
29 TraesCS3D01G422600 chr4B 78.583 1242 207 43 1375 2593 139571761 139570556 0.000000e+00 765
30 TraesCS3D01G422600 chr4A 81.250 1440 237 24 1176 2597 478191212 478192636 0.000000e+00 1133
31 TraesCS3D01G422600 chr4A 78.857 350 65 9 2251 2593 478216299 478216646 1.070000e-55 228
32 TraesCS3D01G422600 chr7D 78.936 1448 241 42 1176 2597 63462346 63463755 0.000000e+00 926
33 TraesCS3D01G422600 chr7D 88.444 675 54 14 134 801 637148814 637149471 0.000000e+00 793
34 TraesCS3D01G422600 chr7D 86.538 676 71 14 134 799 119561324 119561989 0.000000e+00 726
35 TraesCS3D01G422600 chr7D 93.919 148 5 3 1 148 50711094 50711237 1.780000e-53 220
36 TraesCS3D01G422600 chr5A 87.206 680 60 15 134 801 320937153 320936489 0.000000e+00 749
37 TraesCS3D01G422600 chr5D 87.078 681 57 21 134 801 525456382 525455720 0.000000e+00 741
38 TraesCS3D01G422600 chr6D 86.647 689 62 18 134 801 428602808 428602129 0.000000e+00 736
39 TraesCS3D01G422600 chr6D 77.778 666 107 26 1667 2308 61003526 61004174 4.650000e-99 372
40 TraesCS3D01G422600 chr6D 78.414 454 49 24 1178 1602 61003091 61003524 2.270000e-62 250
41 TraesCS3D01G422600 chr6D 85.417 240 28 6 7 244 2196517 2196283 3.800000e-60 243
42 TraesCS3D01G422600 chr6D 75.839 447 92 16 1375 1813 56211923 56212361 2.980000e-51 213
43 TraesCS3D01G422600 chr6D 83.251 203 34 0 2392 2594 61004197 61004399 1.810000e-43 187
44 TraesCS3D01G422600 chr6D 86.184 152 21 0 1220 1371 39488529 39488680 8.470000e-37 165
45 TraesCS3D01G422600 chr6D 83.626 171 22 5 1202 1371 40061834 40061669 5.100000e-34 156
46 TraesCS3D01G422600 chr2B 86.726 678 66 17 134 801 168059604 168060267 0.000000e+00 732
47 TraesCS3D01G422600 chr7A 86.483 688 61 18 137 801 283157922 283157244 0.000000e+00 726
48 TraesCS3D01G422600 chr7A 86.297 686 69 18 134 799 628357299 628357979 0.000000e+00 723
49 TraesCS3D01G422600 chr1A 86.598 679 65 19 134 799 34980087 34980752 0.000000e+00 726
50 TraesCS3D01G422600 chr1A 76.532 1240 226 39 1375 2576 463219014 463220226 5.410000e-173 617
51 TraesCS3D01G422600 chr1A 79.249 559 60 35 3 555 251569372 251569880 4.720000e-89 339
52 TraesCS3D01G422600 chr1D 77.643 1239 214 39 1375 2576 363861582 363862794 0.000000e+00 695
53 TraesCS3D01G422600 chr5B 82.276 457 47 10 1 430 618209882 618209433 7.780000e-97 364
54 TraesCS3D01G422600 chr7B 90.355 197 19 0 1176 1372 3866991 3867187 3.780000e-65 259
55 TraesCS3D01G422600 chr7B 84.286 210 20 12 3 210 78575296 78575494 3.890000e-45 193
56 TraesCS3D01G422600 chr7B 81.301 246 32 12 1 244 145707263 145707030 1.810000e-43 187
57 TraesCS3D01G422600 chr6A 77.506 449 76 20 1179 1610 77607417 77607857 2.940000e-61 246
58 TraesCS3D01G422600 chr6A 86.275 153 19 2 1220 1371 51480096 51479945 8.470000e-37 165
59 TraesCS3D01G422600 chr6B 85.222 203 30 0 2392 2594 134839615 134839817 3.860000e-50 209
60 TraesCS3D01G422600 chr6B 75.103 486 83 22 1 454 593969667 593969188 3.890000e-45 193


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G422600 chr3D 535398782 535402593 3811 False 7040.000000 7040 100.000000 1 3812 1 chr3D.!!$F2 3811
1 TraesCS3D01G422600 chr3D 533958536 533960402 1866 True 2169.000000 2169 87.657000 863 2760 1 chr3D.!!$R2 1897
2 TraesCS3D01G422600 chr3D 534115381 534117184 1803 False 2019.000000 2019 86.928000 944 2765 1 chr3D.!!$F1 1821
3 TraesCS3D01G422600 chr3B 706027330 706029185 1855 True 2071.000000 2071 86.902000 885 2765 1 chr3B.!!$R1 1880
4 TraesCS3D01G422600 chr3B 706753904 706756992 3088 False 1341.666667 3315 93.710000 827 3378 3 chr3B.!!$F3 2551
5 TraesCS3D01G422600 chr3B 706711680 706712879 1199 False 1312.000000 1312 86.382000 1532 2765 1 chr3B.!!$F1 1233
6 TraesCS3D01G422600 chr3B 706182596 706187663 5067 False 1250.250000 2429 89.507750 885 3812 4 chr3B.!!$F2 2927
7 TraesCS3D01G422600 chr3A 670535421 670536252 831 False 1232.000000 1232 93.365000 827 1665 1 chr3A.!!$F1 838
8 TraesCS3D01G422600 chr3A 670545601 670547732 2131 False 1013.000000 2359 91.036667 1665 3812 3 chr3A.!!$F3 2147
9 TraesCS3D01G422600 chr4D 98014122 98015617 1495 True 1201.000000 1201 81.423000 1176 2671 1 chr4D.!!$R3 1495
10 TraesCS3D01G422600 chr4D 435197397 435198925 1528 True 1037.000000 1037 79.278000 1205 2760 1 chr4D.!!$R7 1555
11 TraesCS3D01G422600 chr4D 505357490 505358889 1399 True 856.000000 856 78.192000 1176 2597 1 chr4D.!!$R8 1421
12 TraesCS3D01G422600 chr4D 97960809 97962020 1211 True 804.000000 804 79.083000 1375 2593 1 chr4D.!!$R1 1218
13 TraesCS3D01G422600 chr4D 97968606 97969800 1194 True 728.000000 728 78.074000 1375 2593 1 chr4D.!!$R2 1218
14 TraesCS3D01G422600 chr4D 374040029 374041174 1145 True 706.000000 706 78.333000 1582 2760 1 chr4D.!!$R4 1178
15 TraesCS3D01G422600 chr4B 139592436 139593859 1423 True 1171.000000 1171 81.787000 1176 2597 1 chr4B.!!$R3 1421
16 TraesCS3D01G422600 chr4B 139547573 139548785 1212 True 800.000000 800 78.986000 1375 2593 1 chr4B.!!$R1 1218
17 TraesCS3D01G422600 chr4B 139570556 139571761 1205 True 765.000000 765 78.583000 1375 2593 1 chr4B.!!$R2 1218
18 TraesCS3D01G422600 chr4A 478191212 478192636 1424 False 1133.000000 1133 81.250000 1176 2597 1 chr4A.!!$F1 1421
19 TraesCS3D01G422600 chr7D 63462346 63463755 1409 False 926.000000 926 78.936000 1176 2597 1 chr7D.!!$F2 1421
20 TraesCS3D01G422600 chr7D 637148814 637149471 657 False 793.000000 793 88.444000 134 801 1 chr7D.!!$F4 667
21 TraesCS3D01G422600 chr7D 119561324 119561989 665 False 726.000000 726 86.538000 134 799 1 chr7D.!!$F3 665
22 TraesCS3D01G422600 chr5A 320936489 320937153 664 True 749.000000 749 87.206000 134 801 1 chr5A.!!$R1 667
23 TraesCS3D01G422600 chr5D 525455720 525456382 662 True 741.000000 741 87.078000 134 801 1 chr5D.!!$R1 667
24 TraesCS3D01G422600 chr6D 428602129 428602808 679 True 736.000000 736 86.647000 134 801 1 chr6D.!!$R3 667
25 TraesCS3D01G422600 chr6D 61003091 61004399 1308 False 269.666667 372 79.814333 1178 2594 3 chr6D.!!$F3 1416
26 TraesCS3D01G422600 chr2B 168059604 168060267 663 False 732.000000 732 86.726000 134 801 1 chr2B.!!$F1 667
27 TraesCS3D01G422600 chr7A 283157244 283157922 678 True 726.000000 726 86.483000 137 801 1 chr7A.!!$R1 664
28 TraesCS3D01G422600 chr7A 628357299 628357979 680 False 723.000000 723 86.297000 134 799 1 chr7A.!!$F1 665
29 TraesCS3D01G422600 chr1A 34980087 34980752 665 False 726.000000 726 86.598000 134 799 1 chr1A.!!$F1 665
30 TraesCS3D01G422600 chr1A 463219014 463220226 1212 False 617.000000 617 76.532000 1375 2576 1 chr1A.!!$F3 1201
31 TraesCS3D01G422600 chr1A 251569372 251569880 508 False 339.000000 339 79.249000 3 555 1 chr1A.!!$F2 552
32 TraesCS3D01G422600 chr1D 363861582 363862794 1212 False 695.000000 695 77.643000 1375 2576 1 chr1D.!!$F1 1201

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
900 912 0.037419 CCATTTCCTTGGGCCGTTTG 60.037 55.000 0.0 0.0 32.8 2.93 F
2106 2758 2.437651 TGGGTGAGTTGTGAATCTGTGA 59.562 45.455 0.0 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2117 2786 1.132554 ATCCCTATCCCAGCCTGCAG 61.133 60.0 6.78 6.78 0.0 4.41 R
3547 6684 0.037590 ATGACCGGTAAGCTGCCAAA 59.962 50.0 7.34 0.00 0.0 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.323939 GATTCATCGCGTCGAGATCT 57.676 50.000 8.63 0.00 39.91 2.75
50 51 7.056635 ACTAGATCCCATGTTGATAGGTTTTG 58.943 38.462 0.00 0.00 0.00 2.44
55 56 4.457603 CCCATGTTGATAGGTTTTGACGAA 59.542 41.667 0.00 0.00 0.00 3.85
56 57 5.390613 CCATGTTGATAGGTTTTGACGAAC 58.609 41.667 0.00 0.00 0.00 3.95
60 61 7.090953 TGTTGATAGGTTTTGACGAACTTTT 57.909 32.000 0.00 0.00 0.00 2.27
61 62 7.540299 TGTTGATAGGTTTTGACGAACTTTTT 58.460 30.769 0.00 0.00 0.00 1.94
62 63 7.698970 TGTTGATAGGTTTTGACGAACTTTTTC 59.301 33.333 0.00 0.00 0.00 2.29
63 64 7.562454 TGATAGGTTTTGACGAACTTTTTCT 57.438 32.000 0.00 0.00 0.00 2.52
64 65 7.992008 TGATAGGTTTTGACGAACTTTTTCTT 58.008 30.769 0.00 0.00 0.00 2.52
65 66 8.126700 TGATAGGTTTTGACGAACTTTTTCTTC 58.873 33.333 0.00 0.00 31.95 2.87
66 67 6.262193 AGGTTTTGACGAACTTTTTCTTCA 57.738 33.333 0.00 0.00 38.03 3.02
67 68 6.090783 AGGTTTTGACGAACTTTTTCTTCAC 58.909 36.000 0.00 0.00 39.15 3.18
68 69 5.003121 GGTTTTGACGAACTTTTTCTTCACG 59.997 40.000 0.00 0.00 39.15 4.35
225 229 1.067364 TCTCGTGAAAGCACAACCGTA 59.933 47.619 0.00 0.00 45.41 4.02
254 258 1.531578 GGAAGCAAAACCGTGACTCTC 59.468 52.381 0.00 0.00 0.00 3.20
370 375 2.440539 AACTGTGACTCTCGCGAAAT 57.559 45.000 11.33 0.00 0.00 2.17
401 406 4.110186 GAAAATGCGTTTTTCCGTTTCC 57.890 40.909 17.39 0.00 44.95 3.13
402 407 1.761206 AATGCGTTTTTCCGTTTCCG 58.239 45.000 0.00 0.00 0.00 4.30
403 408 0.945813 ATGCGTTTTTCCGTTTCCGA 59.054 45.000 0.00 0.00 35.63 4.55
404 409 0.305313 TGCGTTTTTCCGTTTCCGAG 59.695 50.000 0.00 0.00 35.63 4.63
405 410 0.582960 GCGTTTTTCCGTTTCCGAGA 59.417 50.000 0.00 0.00 35.63 4.04
406 411 1.398071 GCGTTTTTCCGTTTCCGAGAG 60.398 52.381 0.00 0.00 35.63 3.20
428 433 4.415332 GGCCACGACTCTCGCGAA 62.415 66.667 11.33 0.02 45.12 4.70
429 434 2.430244 GCCACGACTCTCGCGAAA 60.430 61.111 11.33 0.00 45.12 3.46
430 435 2.437343 GCCACGACTCTCGCGAAAG 61.437 63.158 11.33 9.68 45.12 2.62
442 447 3.557824 CGAAAGCACACCCGTACC 58.442 61.111 0.00 0.00 0.00 3.34
443 448 1.005394 CGAAAGCACACCCGTACCT 60.005 57.895 0.00 0.00 0.00 3.08
444 449 1.012486 CGAAAGCACACCCGTACCTC 61.012 60.000 0.00 0.00 0.00 3.85
445 450 0.320697 GAAAGCACACCCGTACCTCT 59.679 55.000 0.00 0.00 0.00 3.69
446 451 0.320697 AAAGCACACCCGTACCTCTC 59.679 55.000 0.00 0.00 0.00 3.20
447 452 1.874345 AAGCACACCCGTACCTCTCG 61.874 60.000 0.00 0.00 0.00 4.04
448 453 2.181021 CACACCCGTACCTCTCGC 59.819 66.667 0.00 0.00 0.00 5.03
449 454 3.437795 ACACCCGTACCTCTCGCG 61.438 66.667 0.00 0.00 0.00 5.87
450 455 4.189188 CACCCGTACCTCTCGCGG 62.189 72.222 6.13 0.00 44.55 6.46
465 470 4.914291 CGGAAGCAAAACCGTGAC 57.086 55.556 0.00 0.00 43.53 3.67
466 471 2.317230 CGGAAGCAAAACCGTGACT 58.683 52.632 0.00 0.00 43.53 3.41
467 472 0.234884 CGGAAGCAAAACCGTGACTC 59.765 55.000 0.00 0.00 43.53 3.36
468 473 1.594331 GGAAGCAAAACCGTGACTCT 58.406 50.000 0.00 0.00 0.00 3.24
469 474 1.531578 GGAAGCAAAACCGTGACTCTC 59.468 52.381 0.00 0.00 0.00 3.20
470 475 1.192534 GAAGCAAAACCGTGACTCTCG 59.807 52.381 0.00 0.00 0.00 4.04
471 476 1.204312 GCAAAACCGTGACTCTCGC 59.796 57.895 0.00 0.00 0.00 5.03
472 477 1.495584 GCAAAACCGTGACTCTCGCA 61.496 55.000 0.00 0.00 0.00 5.10
473 478 0.934496 CAAAACCGTGACTCTCGCAA 59.066 50.000 0.00 0.00 0.00 4.85
474 479 1.329292 CAAAACCGTGACTCTCGCAAA 59.671 47.619 0.00 0.00 0.00 3.68
475 480 1.658994 AAACCGTGACTCTCGCAAAA 58.341 45.000 0.00 0.00 0.00 2.44
476 481 1.217882 AACCGTGACTCTCGCAAAAG 58.782 50.000 0.00 0.00 0.00 2.27
477 482 0.600255 ACCGTGACTCTCGCAAAAGG 60.600 55.000 0.00 0.00 0.00 3.11
478 483 0.319555 CCGTGACTCTCGCAAAAGGA 60.320 55.000 0.00 0.00 0.00 3.36
479 484 1.497991 CGTGACTCTCGCAAAAGGAA 58.502 50.000 0.00 0.00 0.00 3.36
480 485 1.864711 CGTGACTCTCGCAAAAGGAAA 59.135 47.619 0.00 0.00 0.00 3.13
481 486 2.286833 CGTGACTCTCGCAAAAGGAAAA 59.713 45.455 0.00 0.00 0.00 2.29
482 487 3.242608 CGTGACTCTCGCAAAAGGAAAAA 60.243 43.478 0.00 0.00 0.00 1.94
521 526 2.861006 GTTTTCGAGAGGCACGGC 59.139 61.111 0.00 0.00 0.00 5.68
550 555 3.916439 CGAAAGCAAAACCGTGCC 58.084 55.556 0.00 0.00 46.14 5.01
551 556 1.358759 CGAAAGCAAAACCGTGCCT 59.641 52.632 0.00 0.00 46.14 4.75
552 557 0.660300 CGAAAGCAAAACCGTGCCTC 60.660 55.000 0.00 0.00 46.14 4.70
553 558 0.668535 GAAAGCAAAACCGTGCCTCT 59.331 50.000 0.00 0.00 46.14 3.69
554 559 0.668535 AAAGCAAAACCGTGCCTCTC 59.331 50.000 0.00 0.00 46.14 3.20
555 560 1.507141 AAGCAAAACCGTGCCTCTCG 61.507 55.000 0.00 0.00 46.14 4.04
556 561 2.556287 CAAAACCGTGCCTCTCGC 59.444 61.111 0.00 0.00 38.31 5.03
557 562 2.668550 AAAACCGTGCCTCTCGCC 60.669 61.111 0.00 0.00 36.24 5.54
563 568 4.742201 GTGCCTCTCGCCGAAGCA 62.742 66.667 2.41 2.41 36.76 3.91
564 569 4.002506 TGCCTCTCGCCGAAGCAA 62.003 61.111 3.93 0.00 36.19 3.91
565 570 2.742372 GCCTCTCGCCGAAGCAAA 60.742 61.111 0.00 0.00 39.83 3.68
566 571 2.325082 GCCTCTCGCCGAAGCAAAA 61.325 57.895 0.00 0.00 39.83 2.44
567 572 1.497722 CCTCTCGCCGAAGCAAAAC 59.502 57.895 0.00 0.00 39.83 2.43
568 573 1.497722 CTCTCGCCGAAGCAAAACC 59.502 57.895 0.00 0.00 39.83 3.27
569 574 2.173382 CTCGCCGAAGCAAAACCG 59.827 61.111 0.00 0.00 39.83 4.44
570 575 3.928618 CTCGCCGAAGCAAAACCGC 62.929 63.158 0.00 0.00 39.83 5.68
572 577 4.020378 GCCGAAGCAAAACCGCGA 62.020 61.111 8.23 0.00 39.53 5.87
573 578 2.127383 CCGAAGCAAAACCGCGAC 60.127 61.111 8.23 0.00 36.85 5.19
574 579 2.604174 CCGAAGCAAAACCGCGACT 61.604 57.895 8.23 0.00 36.85 4.18
575 580 1.154654 CGAAGCAAAACCGCGACTC 60.155 57.895 8.23 0.00 36.85 3.36
576 581 1.154654 GAAGCAAAACCGCGACTCG 60.155 57.895 8.23 0.00 36.85 4.18
586 591 3.545911 GCGACTCGCGAAAGGAAA 58.454 55.556 11.33 0.00 44.55 3.13
587 592 1.857364 GCGACTCGCGAAAGGAAAA 59.143 52.632 11.33 0.00 44.55 2.29
588 593 0.233848 GCGACTCGCGAAAGGAAAAA 59.766 50.000 11.33 0.00 44.55 1.94
656 661 6.660887 TTTTTGGTTGAAAAGCTAAGCAAG 57.339 33.333 10.49 0.00 46.34 4.01
657 662 5.590530 TTTGGTTGAAAAGCTAAGCAAGA 57.409 34.783 10.49 2.36 46.34 3.02
658 663 4.568152 TGGTTGAAAAGCTAAGCAAGAC 57.432 40.909 0.00 0.00 46.34 3.01
659 664 3.317993 TGGTTGAAAAGCTAAGCAAGACC 59.682 43.478 0.00 0.00 46.34 3.85
660 665 3.555518 GTTGAAAAGCTAAGCAAGACCG 58.444 45.455 0.00 0.00 0.00 4.79
661 666 2.151202 TGAAAAGCTAAGCAAGACCGG 58.849 47.619 0.00 0.00 0.00 5.28
662 667 2.152016 GAAAAGCTAAGCAAGACCGGT 58.848 47.619 6.92 6.92 0.00 5.28
663 668 1.523758 AAAGCTAAGCAAGACCGGTG 58.476 50.000 14.63 0.00 0.00 4.94
664 669 0.321653 AAGCTAAGCAAGACCGGTGG 60.322 55.000 14.63 1.63 0.00 4.61
665 670 1.192146 AGCTAAGCAAGACCGGTGGA 61.192 55.000 14.63 0.00 0.00 4.02
666 671 0.321298 GCTAAGCAAGACCGGTGGAA 60.321 55.000 14.63 0.00 0.00 3.53
667 672 1.880646 GCTAAGCAAGACCGGTGGAAA 60.881 52.381 14.63 0.00 0.00 3.13
668 673 2.500229 CTAAGCAAGACCGGTGGAAAA 58.500 47.619 14.63 0.00 0.00 2.29
669 674 1.029681 AAGCAAGACCGGTGGAAAAC 58.970 50.000 14.63 0.00 0.00 2.43
670 675 0.822121 AGCAAGACCGGTGGAAAACC 60.822 55.000 14.63 0.00 46.60 3.27
683 688 5.593183 GTGGAAAACCAAAACGTTGAAAA 57.407 34.783 0.00 0.00 36.83 2.29
684 689 5.986936 GTGGAAAACCAAAACGTTGAAAAA 58.013 33.333 0.00 0.00 36.83 1.94
685 690 5.846994 GTGGAAAACCAAAACGTTGAAAAAC 59.153 36.000 0.00 0.00 36.83 2.43
686 691 5.758784 TGGAAAACCAAAACGTTGAAAAACT 59.241 32.000 0.00 0.00 36.83 2.66
687 692 6.073711 TGGAAAACCAAAACGTTGAAAAACTC 60.074 34.615 0.00 0.00 36.83 3.01
688 693 5.849357 AAACCAAAACGTTGAAAAACTCC 57.151 34.783 0.00 0.00 36.83 3.85
689 694 3.503891 ACCAAAACGTTGAAAAACTCCG 58.496 40.909 0.00 0.00 36.83 4.63
690 695 3.190953 ACCAAAACGTTGAAAAACTCCGA 59.809 39.130 0.00 0.00 36.83 4.55
691 696 4.167268 CCAAAACGTTGAAAAACTCCGAA 58.833 39.130 0.00 0.00 36.83 4.30
692 697 4.621886 CCAAAACGTTGAAAAACTCCGAAA 59.378 37.500 0.00 0.00 36.83 3.46
693 698 5.118817 CCAAAACGTTGAAAAACTCCGAAAA 59.881 36.000 0.00 0.00 36.83 2.29
694 699 6.346678 CCAAAACGTTGAAAAACTCCGAAAAA 60.347 34.615 0.00 0.00 36.83 1.94
715 720 7.854934 AAAAACCGTTTAAAAAGCCAAAAAC 57.145 28.000 0.00 0.00 0.00 2.43
718 723 3.265259 CGTTTAAAAAGCCAAAAACGCG 58.735 40.909 3.53 3.53 44.94 6.01
719 724 3.241709 CGTTTAAAAAGCCAAAAACGCGT 60.242 39.130 5.58 5.58 44.94 6.01
720 725 3.909019 TTAAAAAGCCAAAAACGCGTG 57.091 38.095 14.98 0.00 0.00 5.34
721 726 0.371989 AAAAAGCCAAAAACGCGTGC 59.628 45.000 14.98 12.13 0.00 5.34
722 727 1.747686 AAAAGCCAAAAACGCGTGCG 61.748 50.000 14.98 13.39 46.03 5.34
723 728 4.622456 AGCCAAAAACGCGTGCGG 62.622 61.111 14.98 12.46 44.69 5.69
724 729 4.615834 GCCAAAAACGCGTGCGGA 62.616 61.111 14.98 0.00 44.69 5.54
725 730 2.024871 CCAAAAACGCGTGCGGAA 59.975 55.556 14.98 0.00 44.69 4.30
726 731 1.586564 CCAAAAACGCGTGCGGAAA 60.587 52.632 14.98 0.00 44.69 3.13
727 732 1.140407 CCAAAAACGCGTGCGGAAAA 61.140 50.000 14.98 0.00 44.69 2.29
728 733 0.640768 CAAAAACGCGTGCGGAAAAA 59.359 45.000 14.98 0.00 44.69 1.94
729 734 1.256635 CAAAAACGCGTGCGGAAAAAT 59.743 42.857 14.98 0.00 44.69 1.82
730 735 2.402640 AAAACGCGTGCGGAAAAATA 57.597 40.000 14.98 0.00 44.69 1.40
731 736 2.402640 AAACGCGTGCGGAAAAATAA 57.597 40.000 14.98 0.00 44.69 1.40
732 737 2.402640 AACGCGTGCGGAAAAATAAA 57.597 40.000 14.98 0.00 44.69 1.40
733 738 2.402640 ACGCGTGCGGAAAAATAAAA 57.597 40.000 12.93 0.00 44.69 1.52
734 739 2.728922 ACGCGTGCGGAAAAATAAAAA 58.271 38.095 12.93 0.00 44.69 1.94
767 772 3.490890 GAGCATCCAGACCGCAAC 58.509 61.111 0.00 0.00 0.00 4.17
768 773 1.375908 GAGCATCCAGACCGCAACA 60.376 57.895 0.00 0.00 0.00 3.33
769 774 1.639298 GAGCATCCAGACCGCAACAC 61.639 60.000 0.00 0.00 0.00 3.32
770 775 1.965930 GCATCCAGACCGCAACACA 60.966 57.895 0.00 0.00 0.00 3.72
771 776 1.308069 GCATCCAGACCGCAACACAT 61.308 55.000 0.00 0.00 0.00 3.21
772 777 0.448990 CATCCAGACCGCAACACATG 59.551 55.000 0.00 0.00 0.00 3.21
773 778 0.677731 ATCCAGACCGCAACACATGG 60.678 55.000 0.00 0.00 0.00 3.66
774 779 2.562912 CAGACCGCAACACATGGC 59.437 61.111 0.00 0.00 0.00 4.40
775 780 2.112928 AGACCGCAACACATGGCA 59.887 55.556 0.00 0.00 0.00 4.92
776 781 1.528076 AGACCGCAACACATGGCAA 60.528 52.632 0.00 0.00 0.00 4.52
777 782 1.106351 AGACCGCAACACATGGCAAA 61.106 50.000 0.00 0.00 0.00 3.68
778 783 0.038343 GACCGCAACACATGGCAAAT 60.038 50.000 0.00 0.00 0.00 2.32
779 784 0.319727 ACCGCAACACATGGCAAATG 60.320 50.000 0.00 0.00 0.00 2.32
780 785 1.015085 CCGCAACACATGGCAAATGG 61.015 55.000 0.00 0.00 0.00 3.16
781 786 0.319727 CGCAACACATGGCAAATGGT 60.320 50.000 0.00 0.00 0.00 3.55
782 787 1.873069 CGCAACACATGGCAAATGGTT 60.873 47.619 0.00 0.00 0.00 3.67
783 788 2.608998 CGCAACACATGGCAAATGGTTA 60.609 45.455 0.00 0.00 0.00 2.85
784 789 3.397482 GCAACACATGGCAAATGGTTAA 58.603 40.909 0.00 0.00 0.00 2.01
785 790 3.432933 GCAACACATGGCAAATGGTTAAG 59.567 43.478 0.00 0.00 0.00 1.85
786 791 4.798924 GCAACACATGGCAAATGGTTAAGA 60.799 41.667 0.00 0.00 0.00 2.10
787 792 4.789012 ACACATGGCAAATGGTTAAGAG 57.211 40.909 0.00 0.00 0.00 2.85
788 793 3.056607 ACACATGGCAAATGGTTAAGAGC 60.057 43.478 0.00 0.00 0.00 4.09
789 794 3.056678 CACATGGCAAATGGTTAAGAGCA 60.057 43.478 0.00 0.00 37.73 4.26
790 795 3.056607 ACATGGCAAATGGTTAAGAGCAC 60.057 43.478 0.00 0.00 35.86 4.40
791 796 1.539388 TGGCAAATGGTTAAGAGCACG 59.461 47.619 0.00 0.00 35.86 5.34
792 797 1.617740 GCAAATGGTTAAGAGCACGC 58.382 50.000 0.00 0.00 35.86 5.34
793 798 1.732405 GCAAATGGTTAAGAGCACGCC 60.732 52.381 0.00 0.00 35.86 5.68
794 799 1.539388 CAAATGGTTAAGAGCACGCCA 59.461 47.619 0.00 0.00 35.86 5.69
795 800 1.904287 AATGGTTAAGAGCACGCCAA 58.096 45.000 0.00 0.00 35.86 4.52
796 801 1.453155 ATGGTTAAGAGCACGCCAAG 58.547 50.000 0.00 0.00 35.86 3.61
797 802 0.107831 TGGTTAAGAGCACGCCAAGT 59.892 50.000 0.00 0.00 0.00 3.16
810 815 2.846371 CCAAGTGGCTCCGAAAGAG 58.154 57.895 0.00 0.00 46.29 2.85
818 823 3.723554 CTCCGAAAGAGCGCTAGTT 57.276 52.632 11.50 7.46 35.31 2.24
819 824 1.272781 CTCCGAAAGAGCGCTAGTTG 58.727 55.000 11.50 1.89 35.31 3.16
820 825 0.736325 TCCGAAAGAGCGCTAGTTGC 60.736 55.000 11.50 4.67 38.57 4.17
840 845 1.748493 CTCTCTAGATAGCCATCCCGC 59.252 57.143 0.00 0.00 0.00 6.13
864 875 0.386731 AAAAACGCGATGCCCTTTCG 60.387 50.000 15.93 0.00 39.55 3.46
900 912 0.037419 CCATTTCCTTGGGCCGTTTG 60.037 55.000 0.00 0.00 32.80 2.93
2046 2681 4.288366 TCCATTGGTTCAATCCTACACTGA 59.712 41.667 1.86 0.00 31.05 3.41
2047 2682 5.044919 TCCATTGGTTCAATCCTACACTGAT 60.045 40.000 1.86 0.00 31.05 2.90
2048 2683 5.653769 CCATTGGTTCAATCCTACACTGATT 59.346 40.000 0.00 0.00 31.05 2.57
2049 2684 6.828273 CCATTGGTTCAATCCTACACTGATTA 59.172 38.462 0.00 0.00 31.05 1.75
2102 2754 3.864789 AACTGGGTGAGTTGTGAATCT 57.135 42.857 0.00 0.00 43.71 2.40
2103 2755 3.131709 ACTGGGTGAGTTGTGAATCTG 57.868 47.619 0.00 0.00 0.00 2.90
2104 2756 2.439507 ACTGGGTGAGTTGTGAATCTGT 59.560 45.455 0.00 0.00 0.00 3.41
2105 2757 2.810274 CTGGGTGAGTTGTGAATCTGTG 59.190 50.000 0.00 0.00 0.00 3.66
2106 2758 2.437651 TGGGTGAGTTGTGAATCTGTGA 59.562 45.455 0.00 0.00 0.00 3.58
2117 2786 5.463286 TGTGAATCTGTGATTGATTGCAAC 58.537 37.500 0.00 0.00 36.72 4.17
2290 5159 2.994671 GCCCCTGGCGCTTCTTTTC 61.995 63.158 7.64 0.00 39.62 2.29
2313 5184 4.289379 CATCTGCACCATCGCGCG 62.289 66.667 26.76 26.76 33.35 6.86
2320 5191 4.812476 ACCATCGCGCGCTAGCAA 62.812 61.111 30.48 7.09 45.49 3.91
2577 5576 1.547372 GCGTTTGTACTGGAGGAGGTA 59.453 52.381 0.00 0.00 0.00 3.08
2792 5821 3.301274 TGTATCGTATGTCATCACCCCA 58.699 45.455 0.00 0.00 0.00 4.96
2956 5992 0.677288 ACAGCTGTGTTGCATTGCAT 59.323 45.000 20.97 0.00 38.76 3.96
3004 6040 2.030893 AGATTGTGACAATGGTGTTGCG 60.031 45.455 16.52 0.00 38.41 4.85
3077 6114 2.898729 TCGGATCCTCTTCTTCATGC 57.101 50.000 10.75 0.00 0.00 4.06
3120 6158 2.223157 GCTTTGTGTCTTGTGCGTTGTA 60.223 45.455 0.00 0.00 0.00 2.41
3146 6184 4.923281 GTGTTTGTGTGCATATTTCCTTCC 59.077 41.667 0.00 0.00 0.00 3.46
3171 6209 0.179200 GTTGGCAATTACAGACCGCG 60.179 55.000 1.92 0.00 0.00 6.46
3178 6216 0.172803 ATTACAGACCGCGGTGTCTC 59.827 55.000 39.65 21.95 43.63 3.36
3303 6435 6.983984 TGATCAAATTTTCTTCATGCTGTGA 58.016 32.000 0.00 0.00 34.25 3.58
3321 6453 5.673568 GCTGTGATAGCGTTGATTTGCTTTA 60.674 40.000 0.00 0.00 43.63 1.85
3343 6478 2.751837 TTGTGGGTGTGCGTTGCA 60.752 55.556 0.00 0.00 35.60 4.08
3392 6528 6.153000 CGGGTAATTCTAGCTATAGATGTGGT 59.847 42.308 3.21 0.00 37.86 4.16
3424 6560 4.222588 TCTGCAAAATAAAAGGATGGGGTG 59.777 41.667 0.00 0.00 0.00 4.61
3427 6563 5.544176 TGCAAAATAAAAGGATGGGGTGTTA 59.456 36.000 0.00 0.00 0.00 2.41
3437 6573 0.994591 TGGGGTGTTACTTGGGTGGT 60.995 55.000 0.00 0.00 0.00 4.16
3441 6577 2.227194 GGTGTTACTTGGGTGGTTCAG 58.773 52.381 0.00 0.00 0.00 3.02
3456 6592 3.206150 GGTTCAGAGTTGCAGAAACAGA 58.794 45.455 0.00 0.00 41.61 3.41
3458 6594 4.496507 GGTTCAGAGTTGCAGAAACAGAAC 60.497 45.833 12.55 12.55 41.53 3.01
3465 6601 2.923121 TGCAGAAACAGAACTGAAGCT 58.077 42.857 8.87 0.00 36.38 3.74
3467 6603 2.604132 GCAGAAACAGAACTGAAGCTGC 60.604 50.000 20.56 20.56 40.57 5.25
3469 6605 3.314635 CAGAAACAGAACTGAAGCTGCTT 59.685 43.478 15.92 15.92 36.38 3.91
3477 6613 1.466167 ACTGAAGCTGCTTTGTATGCG 59.534 47.619 17.10 3.20 0.00 4.73
3478 6614 0.168788 TGAAGCTGCTTTGTATGCGC 59.831 50.000 17.10 0.00 0.00 6.09
3479 6615 0.858961 GAAGCTGCTTTGTATGCGCG 60.859 55.000 17.10 0.00 36.00 6.86
3480 6616 2.855728 AAGCTGCTTTGTATGCGCGC 62.856 55.000 27.26 27.26 36.00 6.86
3481 6617 2.787249 CTGCTTTGTATGCGCGCT 59.213 55.556 33.29 19.73 0.00 5.92
3482 6618 1.135315 CTGCTTTGTATGCGCGCTT 59.865 52.632 33.29 28.14 0.00 4.68
3483 6619 0.454957 CTGCTTTGTATGCGCGCTTT 60.455 50.000 33.29 21.61 0.00 3.51
3484 6620 0.728803 TGCTTTGTATGCGCGCTTTG 60.729 50.000 33.29 15.30 0.00 2.77
3485 6621 0.729140 GCTTTGTATGCGCGCTTTGT 60.729 50.000 33.29 17.39 0.00 2.83
3486 6622 0.976963 CTTTGTATGCGCGCTTTGTG 59.023 50.000 33.29 12.23 0.00 3.33
3487 6623 0.386605 TTTGTATGCGCGCTTTGTGG 60.387 50.000 33.29 0.00 0.00 4.17
3488 6624 2.576847 GTATGCGCGCTTTGTGGC 60.577 61.111 33.29 11.26 0.00 5.01
3489 6625 3.052686 TATGCGCGCTTTGTGGCA 61.053 55.556 33.29 9.65 40.06 4.92
3490 6626 3.321315 TATGCGCGCTTTGTGGCAC 62.321 57.895 33.29 11.55 38.36 5.01
3551 6688 3.661758 CTTGCAAGCTTTTGTGTTTGG 57.338 42.857 14.65 0.00 0.00 3.28
3552 6689 1.367659 TGCAAGCTTTTGTGTTTGGC 58.632 45.000 0.00 0.00 0.00 4.52
3553 6690 1.338484 TGCAAGCTTTTGTGTTTGGCA 60.338 42.857 0.00 0.00 0.00 4.92
3554 6691 1.328374 GCAAGCTTTTGTGTTTGGCAG 59.672 47.619 0.00 0.00 0.00 4.85
3555 6692 1.328374 CAAGCTTTTGTGTTTGGCAGC 59.672 47.619 0.00 0.00 0.00 5.25
3556 6693 0.826062 AGCTTTTGTGTTTGGCAGCT 59.174 45.000 0.00 0.00 0.00 4.24
3557 6694 1.207811 AGCTTTTGTGTTTGGCAGCTT 59.792 42.857 0.00 0.00 0.00 3.74
3558 6695 2.430332 AGCTTTTGTGTTTGGCAGCTTA 59.570 40.909 0.00 0.00 0.00 3.09
3559 6696 2.539688 GCTTTTGTGTTTGGCAGCTTAC 59.460 45.455 0.00 0.00 0.00 2.34
3560 6697 2.880963 TTTGTGTTTGGCAGCTTACC 57.119 45.000 0.00 0.00 0.00 2.85
3561 6698 0.665835 TTGTGTTTGGCAGCTTACCG 59.334 50.000 0.00 0.00 0.00 4.02
3562 6699 1.169661 TGTGTTTGGCAGCTTACCGG 61.170 55.000 0.00 0.00 0.00 5.28
3563 6700 1.149627 TGTTTGGCAGCTTACCGGT 59.850 52.632 13.98 13.98 0.00 5.28
3564 6701 0.887387 TGTTTGGCAGCTTACCGGTC 60.887 55.000 12.40 0.00 0.00 4.79
3565 6702 0.887387 GTTTGGCAGCTTACCGGTCA 60.887 55.000 12.40 0.00 0.00 4.02
3566 6703 0.037590 TTTGGCAGCTTACCGGTCAT 59.962 50.000 12.40 0.00 0.00 3.06
3567 6704 0.037590 TTGGCAGCTTACCGGTCATT 59.962 50.000 12.40 0.00 0.00 2.57
3568 6705 0.906066 TGGCAGCTTACCGGTCATTA 59.094 50.000 12.40 0.00 0.00 1.90
3569 6706 1.134521 TGGCAGCTTACCGGTCATTAG 60.135 52.381 12.40 5.93 0.00 1.73
3570 6707 1.134491 GGCAGCTTACCGGTCATTAGT 60.134 52.381 12.40 0.00 0.00 2.24
3571 6708 2.629051 GCAGCTTACCGGTCATTAGTT 58.371 47.619 12.40 0.00 0.00 2.24
3572 6709 3.007635 GCAGCTTACCGGTCATTAGTTT 58.992 45.455 12.40 0.00 0.00 2.66
3573 6710 3.181510 GCAGCTTACCGGTCATTAGTTTG 60.182 47.826 12.40 8.85 0.00 2.93
3574 6711 4.250464 CAGCTTACCGGTCATTAGTTTGA 58.750 43.478 12.40 0.00 0.00 2.69
3575 6712 4.876107 CAGCTTACCGGTCATTAGTTTGAT 59.124 41.667 12.40 0.00 0.00 2.57
3576 6713 5.354234 CAGCTTACCGGTCATTAGTTTGATT 59.646 40.000 12.40 0.00 0.00 2.57
3577 6714 5.944007 AGCTTACCGGTCATTAGTTTGATTT 59.056 36.000 12.40 0.00 0.00 2.17
3578 6715 6.433093 AGCTTACCGGTCATTAGTTTGATTTT 59.567 34.615 12.40 0.00 0.00 1.82
3579 6716 7.039993 AGCTTACCGGTCATTAGTTTGATTTTT 60.040 33.333 12.40 0.00 0.00 1.94
3580 6717 7.061789 GCTTACCGGTCATTAGTTTGATTTTTG 59.938 37.037 12.40 0.00 0.00 2.44
3581 6718 5.778862 ACCGGTCATTAGTTTGATTTTTGG 58.221 37.500 0.00 0.00 0.00 3.28
3582 6719 5.303333 ACCGGTCATTAGTTTGATTTTTGGT 59.697 36.000 0.00 0.00 0.00 3.67
3583 6720 6.490721 ACCGGTCATTAGTTTGATTTTTGGTA 59.509 34.615 0.00 0.00 0.00 3.25
3584 6721 7.177744 ACCGGTCATTAGTTTGATTTTTGGTAT 59.822 33.333 0.00 0.00 0.00 2.73
3585 6722 7.700656 CCGGTCATTAGTTTGATTTTTGGTATC 59.299 37.037 0.00 0.00 0.00 2.24
3586 6723 7.700656 CGGTCATTAGTTTGATTTTTGGTATCC 59.299 37.037 0.00 0.00 0.00 2.59
3587 6724 7.700656 GGTCATTAGTTTGATTTTTGGTATCCG 59.299 37.037 0.00 0.00 0.00 4.18
3588 6725 8.241367 GTCATTAGTTTGATTTTTGGTATCCGT 58.759 33.333 0.00 0.00 0.00 4.69
3589 6726 8.798402 TCATTAGTTTGATTTTTGGTATCCGTT 58.202 29.630 0.00 0.00 0.00 4.44
3590 6727 8.859156 CATTAGTTTGATTTTTGGTATCCGTTG 58.141 33.333 0.00 0.00 0.00 4.10
3591 6728 5.778862 AGTTTGATTTTTGGTATCCGTTGG 58.221 37.500 0.00 0.00 0.00 3.77
3592 6729 3.859411 TGATTTTTGGTATCCGTTGGC 57.141 42.857 0.00 0.00 0.00 4.52
3593 6730 3.426615 TGATTTTTGGTATCCGTTGGCT 58.573 40.909 0.00 0.00 0.00 4.75
3594 6731 4.590918 TGATTTTTGGTATCCGTTGGCTA 58.409 39.130 0.00 0.00 0.00 3.93
3595 6732 5.197451 TGATTTTTGGTATCCGTTGGCTAT 58.803 37.500 0.00 0.00 0.00 2.97
3596 6733 5.654650 TGATTTTTGGTATCCGTTGGCTATT 59.345 36.000 0.00 0.00 0.00 1.73
3597 6734 6.829298 TGATTTTTGGTATCCGTTGGCTATTA 59.171 34.615 0.00 0.00 0.00 0.98
3598 6735 6.439675 TTTTTGGTATCCGTTGGCTATTAC 57.560 37.500 0.00 0.00 0.00 1.89
3599 6736 4.757019 TTGGTATCCGTTGGCTATTACA 57.243 40.909 0.00 0.00 0.00 2.41
3600 6737 4.330944 TGGTATCCGTTGGCTATTACAG 57.669 45.455 0.00 0.00 0.00 2.74
3601 6738 3.962063 TGGTATCCGTTGGCTATTACAGA 59.038 43.478 0.00 0.00 0.00 3.41
3602 6739 4.202182 TGGTATCCGTTGGCTATTACAGAC 60.202 45.833 0.00 0.00 0.00 3.51
3603 6740 2.973694 TCCGTTGGCTATTACAGACC 57.026 50.000 0.00 0.00 0.00 3.85
3604 6741 2.181125 TCCGTTGGCTATTACAGACCA 58.819 47.619 0.00 0.00 0.00 4.02
3605 6742 2.093869 TCCGTTGGCTATTACAGACCAC 60.094 50.000 0.00 0.00 32.35 4.16
3606 6743 2.093658 CCGTTGGCTATTACAGACCACT 60.094 50.000 0.00 0.00 32.35 4.00
3620 6757 4.631131 CAGACCACTGTATCTGTGTTTCA 58.369 43.478 11.30 0.00 38.03 2.69
3621 6758 5.240891 CAGACCACTGTATCTGTGTTTCAT 58.759 41.667 11.30 0.00 38.03 2.57
3622 6759 5.121298 CAGACCACTGTATCTGTGTTTCATG 59.879 44.000 11.30 0.00 38.03 3.07
3623 6760 4.973168 ACCACTGTATCTGTGTTTCATGT 58.027 39.130 0.00 0.00 32.65 3.21
3624 6761 4.756642 ACCACTGTATCTGTGTTTCATGTG 59.243 41.667 0.00 0.00 32.65 3.21
3625 6762 4.996758 CCACTGTATCTGTGTTTCATGTGA 59.003 41.667 0.00 0.00 32.65 3.58
3626 6763 5.645067 CCACTGTATCTGTGTTTCATGTGAT 59.355 40.000 0.00 0.00 32.65 3.06
3627 6764 6.149973 CCACTGTATCTGTGTTTCATGTGATT 59.850 38.462 0.00 0.00 32.65 2.57
3628 6765 7.308770 CCACTGTATCTGTGTTTCATGTGATTT 60.309 37.037 0.00 0.00 32.65 2.17
3629 6766 7.747799 CACTGTATCTGTGTTTCATGTGATTTC 59.252 37.037 0.00 0.00 0.00 2.17
3630 6767 7.445096 ACTGTATCTGTGTTTCATGTGATTTCA 59.555 33.333 0.00 0.00 0.00 2.69
3631 6768 8.339344 TGTATCTGTGTTTCATGTGATTTCAT 57.661 30.769 0.00 0.00 0.00 2.57
3632 6769 8.795513 TGTATCTGTGTTTCATGTGATTTCATT 58.204 29.630 0.00 0.00 0.00 2.57
3649 6840 4.592485 TCATTACTTAGGCAGCTAGCTC 57.408 45.455 16.15 9.87 44.79 4.09
3666 6857 1.274728 GCTCTGGTCTGATGACAGTGT 59.725 52.381 0.00 0.00 44.61 3.55
3667 6858 2.930023 GCTCTGGTCTGATGACAGTGTG 60.930 54.545 0.00 0.00 44.61 3.82
3668 6859 2.298446 CTCTGGTCTGATGACAGTGTGT 59.702 50.000 0.00 0.00 44.61 3.72
3669 6860 2.700371 TCTGGTCTGATGACAGTGTGTT 59.300 45.455 0.00 0.00 44.61 3.32
3670 6861 2.804527 CTGGTCTGATGACAGTGTGTTG 59.195 50.000 0.00 0.00 44.61 3.33
3671 6862 1.532868 GGTCTGATGACAGTGTGTTGC 59.467 52.381 0.00 0.00 44.61 4.17
3672 6863 2.212652 GTCTGATGACAGTGTGTTGCA 58.787 47.619 0.00 0.00 43.81 4.08
3673 6864 2.032549 GTCTGATGACAGTGTGTTGCAC 60.033 50.000 0.00 0.00 43.81 4.57
3703 6900 3.619038 GCACGGTTTTGGTTCAAAAATGA 59.381 39.130 7.29 0.00 43.50 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.323939 AGATCTCGACGCGATGAATC 57.676 50.000 15.93 14.20 34.61 2.52
1 2 2.033424 TGAAGATCTCGACGCGATGAAT 59.967 45.455 15.93 6.44 34.61 2.57
2 3 1.400494 TGAAGATCTCGACGCGATGAA 59.600 47.619 15.93 1.63 34.61 2.57
6 7 1.983605 GTTTTGAAGATCTCGACGCGA 59.016 47.619 15.93 0.00 0.00 5.87
7 8 1.986378 AGTTTTGAAGATCTCGACGCG 59.014 47.619 3.53 3.53 0.00 6.01
14 15 7.205515 ACATGGGATCTAGTTTTGAAGATCT 57.794 36.000 11.05 0.00 37.77 2.75
19 20 7.775093 CCTATCAACATGGGATCTAGTTTTGAA 59.225 37.037 5.52 0.00 32.06 2.69
120 121 2.719354 ACGGTGCGTGCCTTTTTC 59.281 55.556 0.00 0.00 39.18 2.29
246 250 3.854286 TTTTTCTTTCGCGAGAGTCAC 57.146 42.857 24.05 0.00 43.69 3.67
290 295 0.734253 CAGTCGTGCCTCTCGGAAAG 60.734 60.000 0.00 0.00 0.00 2.62
415 420 1.729838 GTGCTTTCGCGAGAGTCGT 60.730 57.895 25.34 0.00 42.81 4.34
416 421 1.729484 TGTGCTTTCGCGAGAGTCG 60.729 57.895 25.34 4.35 43.69 4.18
417 422 1.618640 GGTGTGCTTTCGCGAGAGTC 61.619 60.000 25.34 18.16 43.69 3.36
418 423 1.664965 GGTGTGCTTTCGCGAGAGT 60.665 57.895 25.34 0.00 43.69 3.24
419 424 2.383527 GGGTGTGCTTTCGCGAGAG 61.384 63.158 21.42 21.42 43.69 3.20
420 425 2.357034 GGGTGTGCTTTCGCGAGA 60.357 61.111 9.59 3.35 39.65 4.04
421 426 3.777925 CGGGTGTGCTTTCGCGAG 61.778 66.667 9.59 0.00 41.28 5.03
422 427 3.210223 TACGGGTGTGCTTTCGCGA 62.210 57.895 3.71 3.71 41.28 5.87
423 428 2.735478 TACGGGTGTGCTTTCGCG 60.735 61.111 0.00 0.00 43.61 5.87
424 429 2.674084 GGTACGGGTGTGCTTTCGC 61.674 63.158 0.00 0.00 0.00 4.70
425 430 1.005394 AGGTACGGGTGTGCTTTCG 60.005 57.895 0.00 0.00 0.00 3.46
426 431 0.320697 AGAGGTACGGGTGTGCTTTC 59.679 55.000 0.00 0.00 0.00 2.62
427 432 0.320697 GAGAGGTACGGGTGTGCTTT 59.679 55.000 0.00 0.00 0.00 3.51
428 433 1.874345 CGAGAGGTACGGGTGTGCTT 61.874 60.000 0.00 0.00 0.00 3.91
429 434 2.341101 CGAGAGGTACGGGTGTGCT 61.341 63.158 0.00 0.00 0.00 4.40
430 435 2.181021 CGAGAGGTACGGGTGTGC 59.819 66.667 0.00 0.00 0.00 4.57
431 436 2.181021 GCGAGAGGTACGGGTGTG 59.819 66.667 0.00 0.00 0.00 3.82
432 437 3.437795 CGCGAGAGGTACGGGTGT 61.438 66.667 0.00 0.00 38.51 4.16
433 438 4.189188 CCGCGAGAGGTACGGGTG 62.189 72.222 8.23 0.00 43.23 4.61
434 439 3.925630 TTCCGCGAGAGGTACGGGT 62.926 63.158 8.23 0.00 46.87 5.28
435 440 3.122250 CTTCCGCGAGAGGTACGGG 62.122 68.421 8.23 0.00 46.87 5.28
437 442 2.278013 GCTTCCGCGAGAGGTACG 60.278 66.667 8.23 0.00 0.00 3.67
438 443 0.389426 TTTGCTTCCGCGAGAGGTAC 60.389 55.000 8.23 0.00 39.65 3.34
439 444 0.319083 TTTTGCTTCCGCGAGAGGTA 59.681 50.000 8.23 0.00 39.65 3.08
440 445 1.070786 TTTTGCTTCCGCGAGAGGT 59.929 52.632 8.23 0.00 39.65 3.85
441 446 1.497722 GTTTTGCTTCCGCGAGAGG 59.502 57.895 8.23 4.88 39.65 3.69
442 447 1.497722 GGTTTTGCTTCCGCGAGAG 59.502 57.895 8.23 5.93 39.65 3.20
443 448 2.314647 CGGTTTTGCTTCCGCGAGA 61.315 57.895 8.23 0.00 40.28 4.04
444 449 2.173382 CGGTTTTGCTTCCGCGAG 59.827 61.111 8.23 0.00 40.28 5.03
449 454 1.531578 GAGAGTCACGGTTTTGCTTCC 59.468 52.381 0.00 0.00 0.00 3.46
450 455 1.192534 CGAGAGTCACGGTTTTGCTTC 59.807 52.381 1.62 0.00 0.00 3.86
451 456 1.217882 CGAGAGTCACGGTTTTGCTT 58.782 50.000 1.62 0.00 0.00 3.91
452 457 1.222115 GCGAGAGTCACGGTTTTGCT 61.222 55.000 11.95 0.00 0.00 3.91
453 458 1.204312 GCGAGAGTCACGGTTTTGC 59.796 57.895 11.95 0.00 0.00 3.68
454 459 0.934496 TTGCGAGAGTCACGGTTTTG 59.066 50.000 11.95 0.00 0.00 2.44
455 460 1.658994 TTTGCGAGAGTCACGGTTTT 58.341 45.000 11.95 0.00 0.00 2.43
456 461 1.597663 CTTTTGCGAGAGTCACGGTTT 59.402 47.619 11.95 0.00 0.00 3.27
457 462 1.217882 CTTTTGCGAGAGTCACGGTT 58.782 50.000 11.95 0.00 0.00 4.44
458 463 0.600255 CCTTTTGCGAGAGTCACGGT 60.600 55.000 11.95 0.00 0.00 4.83
459 464 0.319555 TCCTTTTGCGAGAGTCACGG 60.320 55.000 11.95 0.00 0.00 4.94
460 465 1.497991 TTCCTTTTGCGAGAGTCACG 58.502 50.000 5.53 5.53 0.00 4.35
461 466 3.963383 TTTTCCTTTTGCGAGAGTCAC 57.037 42.857 0.00 0.00 0.00 3.67
497 502 2.032426 GTGCCTCTCGAAAACGGAAAAA 59.968 45.455 0.00 0.00 0.00 1.94
498 503 1.600485 GTGCCTCTCGAAAACGGAAAA 59.400 47.619 0.00 0.00 0.00 2.29
499 504 1.223187 GTGCCTCTCGAAAACGGAAA 58.777 50.000 0.00 0.00 0.00 3.13
500 505 0.942410 CGTGCCTCTCGAAAACGGAA 60.942 55.000 0.00 0.00 0.00 4.30
501 506 1.372499 CGTGCCTCTCGAAAACGGA 60.372 57.895 0.00 0.00 0.00 4.69
502 507 2.380410 CCGTGCCTCTCGAAAACGG 61.380 63.158 8.89 8.89 46.69 4.44
503 508 3.011760 GCCGTGCCTCTCGAAAACG 62.012 63.158 0.00 0.00 0.00 3.60
504 509 2.677979 GGCCGTGCCTCTCGAAAAC 61.678 63.158 7.58 0.00 46.69 2.43
505 510 2.358247 GGCCGTGCCTCTCGAAAA 60.358 61.111 7.58 0.00 46.69 2.29
519 524 3.909258 TTTCGCGAGAGTCACGGCC 62.909 63.158 9.59 0.00 43.69 6.13
520 525 2.430244 TTTCGCGAGAGTCACGGC 60.430 61.111 9.59 3.61 43.69 5.68
521 526 2.437343 GCTTTCGCGAGAGTCACGG 61.437 63.158 25.34 2.90 43.69 4.94
522 527 1.275471 TTGCTTTCGCGAGAGTCACG 61.275 55.000 25.34 5.53 43.69 4.35
523 528 0.859232 TTTGCTTTCGCGAGAGTCAC 59.141 50.000 25.34 11.41 43.69 3.67
524 529 1.260561 GTTTTGCTTTCGCGAGAGTCA 59.739 47.619 25.34 20.22 43.69 3.41
525 530 1.398578 GGTTTTGCTTTCGCGAGAGTC 60.399 52.381 25.34 18.16 43.69 3.36
526 531 0.586802 GGTTTTGCTTTCGCGAGAGT 59.413 50.000 25.34 0.00 43.69 3.24
527 532 0.451135 CGGTTTTGCTTTCGCGAGAG 60.451 55.000 21.42 21.42 43.69 3.20
528 533 1.155424 ACGGTTTTGCTTTCGCGAGA 61.155 50.000 9.59 3.35 39.65 4.04
529 534 0.991770 CACGGTTTTGCTTTCGCGAG 60.992 55.000 9.59 0.00 39.65 5.03
530 535 1.010574 CACGGTTTTGCTTTCGCGA 60.011 52.632 3.71 3.71 39.65 5.87
531 536 2.635305 GCACGGTTTTGCTTTCGCG 61.635 57.895 0.00 0.00 39.59 5.87
532 537 2.300066 GGCACGGTTTTGCTTTCGC 61.300 57.895 0.00 0.00 42.56 4.70
533 538 0.660300 GAGGCACGGTTTTGCTTTCG 60.660 55.000 0.00 0.00 42.56 3.46
534 539 0.668535 AGAGGCACGGTTTTGCTTTC 59.331 50.000 0.00 0.00 42.56 2.62
535 540 0.668535 GAGAGGCACGGTTTTGCTTT 59.331 50.000 0.00 0.00 42.56 3.51
536 541 1.507141 CGAGAGGCACGGTTTTGCTT 61.507 55.000 0.00 0.00 42.56 3.91
537 542 1.961277 CGAGAGGCACGGTTTTGCT 60.961 57.895 0.00 0.00 42.56 3.91
538 543 2.556287 CGAGAGGCACGGTTTTGC 59.444 61.111 0.00 0.00 42.18 3.68
539 544 2.556287 GCGAGAGGCACGGTTTTG 59.444 61.111 0.00 0.00 42.87 2.44
549 554 1.497722 GTTTTGCTTCGGCGAGAGG 59.502 57.895 10.46 5.97 45.37 3.69
550 555 1.497722 GGTTTTGCTTCGGCGAGAG 59.502 57.895 10.46 11.82 45.37 3.20
551 556 2.314647 CGGTTTTGCTTCGGCGAGA 61.315 57.895 10.46 0.33 45.37 4.04
552 557 2.173382 CGGTTTTGCTTCGGCGAG 59.827 61.111 10.46 5.82 45.37 5.03
553 558 4.020378 GCGGTTTTGCTTCGGCGA 62.020 61.111 4.99 4.99 45.37 5.54
555 560 4.020378 TCGCGGTTTTGCTTCGGC 62.020 61.111 6.13 0.00 42.19 5.54
556 561 2.127383 GTCGCGGTTTTGCTTCGG 60.127 61.111 6.13 0.00 0.00 4.30
557 562 1.154654 GAGTCGCGGTTTTGCTTCG 60.155 57.895 6.13 0.00 0.00 3.79
558 563 1.154654 CGAGTCGCGGTTTTGCTTC 60.155 57.895 6.13 0.00 36.03 3.86
559 564 2.935955 CGAGTCGCGGTTTTGCTT 59.064 55.556 6.13 0.00 36.03 3.91
560 565 3.712881 GCGAGTCGCGGTTTTGCT 61.713 61.111 23.39 0.00 44.55 3.91
633 638 6.312672 GTCTTGCTTAGCTTTTCAACCAAAAA 59.687 34.615 5.60 0.00 33.40 1.94
634 639 5.810074 GTCTTGCTTAGCTTTTCAACCAAAA 59.190 36.000 5.60 0.00 32.77 2.44
635 640 5.348164 GTCTTGCTTAGCTTTTCAACCAAA 58.652 37.500 5.60 0.00 0.00 3.28
636 641 4.202111 GGTCTTGCTTAGCTTTTCAACCAA 60.202 41.667 5.60 0.00 0.00 3.67
637 642 3.317993 GGTCTTGCTTAGCTTTTCAACCA 59.682 43.478 5.60 0.00 0.00 3.67
638 643 3.609409 CGGTCTTGCTTAGCTTTTCAACC 60.609 47.826 5.60 4.07 0.00 3.77
639 644 3.555518 CGGTCTTGCTTAGCTTTTCAAC 58.444 45.455 5.60 0.00 0.00 3.18
640 645 2.552315 CCGGTCTTGCTTAGCTTTTCAA 59.448 45.455 5.60 0.00 0.00 2.69
641 646 2.151202 CCGGTCTTGCTTAGCTTTTCA 58.849 47.619 5.60 0.00 0.00 2.69
642 647 2.095718 CACCGGTCTTGCTTAGCTTTTC 60.096 50.000 2.59 0.00 0.00 2.29
643 648 1.880027 CACCGGTCTTGCTTAGCTTTT 59.120 47.619 2.59 0.00 0.00 2.27
644 649 1.523758 CACCGGTCTTGCTTAGCTTT 58.476 50.000 2.59 0.00 0.00 3.51
645 650 0.321653 CCACCGGTCTTGCTTAGCTT 60.322 55.000 2.59 0.00 0.00 3.74
646 651 1.192146 TCCACCGGTCTTGCTTAGCT 61.192 55.000 2.59 0.00 0.00 3.32
647 652 0.321298 TTCCACCGGTCTTGCTTAGC 60.321 55.000 2.59 0.00 0.00 3.09
648 653 2.178912 TTTCCACCGGTCTTGCTTAG 57.821 50.000 2.59 0.00 0.00 2.18
649 654 2.223745 GTTTTCCACCGGTCTTGCTTA 58.776 47.619 2.59 0.00 0.00 3.09
650 655 1.029681 GTTTTCCACCGGTCTTGCTT 58.970 50.000 2.59 0.00 0.00 3.91
651 656 0.822121 GGTTTTCCACCGGTCTTGCT 60.822 55.000 2.59 0.00 40.31 3.91
652 657 1.658114 GGTTTTCCACCGGTCTTGC 59.342 57.895 2.59 0.00 40.31 4.01
660 665 9.110066 AGTTTTTCAACGTTTTGGTTTTCCACC 62.110 37.037 0.00 0.00 43.06 4.61
661 666 6.292973 AGTTTTTCAACGTTTTGGTTTTCCAC 60.293 34.615 0.00 0.00 43.06 4.02
662 667 5.758784 AGTTTTTCAACGTTTTGGTTTTCCA 59.241 32.000 0.00 0.00 42.30 3.53
663 668 6.230849 AGTTTTTCAACGTTTTGGTTTTCC 57.769 33.333 0.00 0.00 38.03 3.13
664 669 6.301108 GGAGTTTTTCAACGTTTTGGTTTTC 58.699 36.000 0.00 0.00 38.03 2.29
665 670 5.107414 CGGAGTTTTTCAACGTTTTGGTTTT 60.107 36.000 0.00 0.00 38.03 2.43
666 671 4.386350 CGGAGTTTTTCAACGTTTTGGTTT 59.614 37.500 0.00 0.00 38.03 3.27
667 672 3.921630 CGGAGTTTTTCAACGTTTTGGTT 59.078 39.130 0.00 0.00 38.03 3.67
668 673 3.190953 TCGGAGTTTTTCAACGTTTTGGT 59.809 39.130 0.00 0.00 38.03 3.67
669 674 3.760537 TCGGAGTTTTTCAACGTTTTGG 58.239 40.909 0.00 0.00 38.03 3.28
670 675 5.748872 TTTCGGAGTTTTTCAACGTTTTG 57.251 34.783 0.00 0.00 38.03 2.44
671 676 6.766452 TTTTTCGGAGTTTTTCAACGTTTT 57.234 29.167 0.00 0.00 38.03 2.43
691 696 6.577800 CGTTTTTGGCTTTTTAAACGGTTTTT 59.422 30.769 11.87 0.00 45.26 1.94
692 697 6.078479 CGTTTTTGGCTTTTTAAACGGTTTT 58.922 32.000 11.87 0.00 45.26 2.43
693 698 5.619513 CGTTTTTGGCTTTTTAAACGGTTT 58.380 33.333 11.33 11.33 45.26 3.27
694 699 5.205988 CGTTTTTGGCTTTTTAAACGGTT 57.794 34.783 10.17 0.00 45.26 4.44
695 700 4.843879 CGTTTTTGGCTTTTTAAACGGT 57.156 36.364 10.17 0.00 45.26 4.83
698 703 4.016623 CACGCGTTTTTGGCTTTTTAAAC 58.983 39.130 10.22 0.00 0.00 2.01
699 704 3.483738 GCACGCGTTTTTGGCTTTTTAAA 60.484 39.130 10.22 0.00 0.00 1.52
700 705 2.029365 GCACGCGTTTTTGGCTTTTTAA 59.971 40.909 10.22 0.00 0.00 1.52
701 706 1.588861 GCACGCGTTTTTGGCTTTTTA 59.411 42.857 10.22 0.00 0.00 1.52
702 707 0.371989 GCACGCGTTTTTGGCTTTTT 59.628 45.000 10.22 0.00 0.00 1.94
703 708 1.747686 CGCACGCGTTTTTGGCTTTT 61.748 50.000 10.22 0.00 34.35 2.27
704 709 2.227568 CGCACGCGTTTTTGGCTTT 61.228 52.632 10.22 0.00 34.35 3.51
705 710 2.653766 CGCACGCGTTTTTGGCTT 60.654 55.556 10.22 0.00 34.35 4.35
706 711 4.622456 CCGCACGCGTTTTTGGCT 62.622 61.111 10.22 0.00 37.81 4.75
707 712 4.615834 TCCGCACGCGTTTTTGGC 62.616 61.111 10.22 9.05 37.81 4.52
708 713 1.140407 TTTTCCGCACGCGTTTTTGG 61.140 50.000 10.22 9.42 37.81 3.28
709 714 0.640768 TTTTTCCGCACGCGTTTTTG 59.359 45.000 10.22 0.00 37.81 2.44
710 715 1.562017 ATTTTTCCGCACGCGTTTTT 58.438 40.000 10.22 0.00 37.81 1.94
711 716 2.402640 TATTTTTCCGCACGCGTTTT 57.597 40.000 10.22 0.00 37.81 2.43
712 717 2.402640 TTATTTTTCCGCACGCGTTT 57.597 40.000 10.22 0.00 37.81 3.60
713 718 2.402640 TTTATTTTTCCGCACGCGTT 57.597 40.000 10.22 0.00 37.81 4.84
714 719 2.402640 TTTTATTTTTCCGCACGCGT 57.597 40.000 5.58 5.58 37.81 6.01
732 737 2.299013 GCTCCCTCCGGATTTTGTTTTT 59.701 45.455 3.57 0.00 37.60 1.94
733 738 1.893137 GCTCCCTCCGGATTTTGTTTT 59.107 47.619 3.57 0.00 37.60 2.43
734 739 1.203001 TGCTCCCTCCGGATTTTGTTT 60.203 47.619 3.57 0.00 37.60 2.83
735 740 0.404040 TGCTCCCTCCGGATTTTGTT 59.596 50.000 3.57 0.00 37.60 2.83
736 741 0.625849 ATGCTCCCTCCGGATTTTGT 59.374 50.000 3.57 0.00 37.60 2.83
737 742 1.312815 GATGCTCCCTCCGGATTTTG 58.687 55.000 3.57 0.00 37.60 2.44
738 743 0.183731 GGATGCTCCCTCCGGATTTT 59.816 55.000 3.57 0.00 37.60 1.82
739 744 0.988145 TGGATGCTCCCTCCGGATTT 60.988 55.000 3.57 0.00 37.60 2.17
740 745 1.384502 TGGATGCTCCCTCCGGATT 60.385 57.895 3.57 0.00 37.60 3.01
741 746 1.840650 CTGGATGCTCCCTCCGGAT 60.841 63.158 3.57 0.00 41.00 4.18
742 747 2.444706 CTGGATGCTCCCTCCGGA 60.445 66.667 2.93 2.93 41.00 5.14
743 748 2.444706 TCTGGATGCTCCCTCCGG 60.445 66.667 0.00 0.00 40.04 5.14
744 749 2.801631 GGTCTGGATGCTCCCTCCG 61.802 68.421 0.50 0.00 35.03 4.63
745 750 2.801631 CGGTCTGGATGCTCCCTCC 61.802 68.421 0.50 0.00 35.03 4.30
746 751 2.818132 CGGTCTGGATGCTCCCTC 59.182 66.667 0.50 0.00 35.03 4.30
747 752 3.474570 GCGGTCTGGATGCTCCCT 61.475 66.667 0.50 0.00 35.03 4.20
748 753 3.329542 TTGCGGTCTGGATGCTCCC 62.330 63.158 0.50 0.00 35.03 4.30
749 754 2.109126 GTTGCGGTCTGGATGCTCC 61.109 63.158 0.00 0.00 36.96 4.70
750 755 1.375908 TGTTGCGGTCTGGATGCTC 60.376 57.895 0.00 0.00 0.00 4.26
751 756 1.672356 GTGTTGCGGTCTGGATGCT 60.672 57.895 0.00 0.00 0.00 3.79
752 757 1.308069 ATGTGTTGCGGTCTGGATGC 61.308 55.000 0.00 0.00 0.00 3.91
753 758 0.448990 CATGTGTTGCGGTCTGGATG 59.551 55.000 0.00 0.00 0.00 3.51
754 759 0.677731 CCATGTGTTGCGGTCTGGAT 60.678 55.000 0.00 0.00 0.00 3.41
755 760 1.302431 CCATGTGTTGCGGTCTGGA 60.302 57.895 0.00 0.00 0.00 3.86
756 761 2.981560 GCCATGTGTTGCGGTCTGG 61.982 63.158 0.00 0.00 0.00 3.86
757 762 1.794151 TTGCCATGTGTTGCGGTCTG 61.794 55.000 0.00 0.00 0.00 3.51
758 763 1.106351 TTTGCCATGTGTTGCGGTCT 61.106 50.000 0.00 0.00 0.00 3.85
759 764 0.038343 ATTTGCCATGTGTTGCGGTC 60.038 50.000 0.00 0.00 0.00 4.79
760 765 0.319727 CATTTGCCATGTGTTGCGGT 60.320 50.000 0.00 0.00 0.00 5.68
761 766 1.015085 CCATTTGCCATGTGTTGCGG 61.015 55.000 0.00 0.00 0.00 5.69
762 767 0.319727 ACCATTTGCCATGTGTTGCG 60.320 50.000 0.00 0.00 0.00 4.85
763 768 1.881591 AACCATTTGCCATGTGTTGC 58.118 45.000 0.00 0.00 0.00 4.17
764 769 4.880759 TCTTAACCATTTGCCATGTGTTG 58.119 39.130 0.00 0.00 0.00 3.33
765 770 4.561326 GCTCTTAACCATTTGCCATGTGTT 60.561 41.667 0.00 0.00 0.00 3.32
766 771 3.056607 GCTCTTAACCATTTGCCATGTGT 60.057 43.478 0.00 0.00 0.00 3.72
767 772 3.056678 TGCTCTTAACCATTTGCCATGTG 60.057 43.478 0.00 0.00 0.00 3.21
768 773 3.056607 GTGCTCTTAACCATTTGCCATGT 60.057 43.478 0.00 0.00 0.00 3.21
769 774 3.514645 GTGCTCTTAACCATTTGCCATG 58.485 45.455 0.00 0.00 0.00 3.66
770 775 2.164219 CGTGCTCTTAACCATTTGCCAT 59.836 45.455 0.00 0.00 0.00 4.40
771 776 1.539388 CGTGCTCTTAACCATTTGCCA 59.461 47.619 0.00 0.00 0.00 4.92
772 777 1.732405 GCGTGCTCTTAACCATTTGCC 60.732 52.381 0.00 0.00 0.00 4.52
773 778 1.617740 GCGTGCTCTTAACCATTTGC 58.382 50.000 0.00 0.00 0.00 3.68
774 779 1.539388 TGGCGTGCTCTTAACCATTTG 59.461 47.619 0.00 0.00 0.00 2.32
775 780 1.904287 TGGCGTGCTCTTAACCATTT 58.096 45.000 0.00 0.00 0.00 2.32
776 781 1.812571 CTTGGCGTGCTCTTAACCATT 59.187 47.619 0.00 0.00 0.00 3.16
777 782 1.271379 ACTTGGCGTGCTCTTAACCAT 60.271 47.619 0.00 0.00 0.00 3.55
778 783 0.107831 ACTTGGCGTGCTCTTAACCA 59.892 50.000 0.00 0.00 0.00 3.67
779 784 0.517316 CACTTGGCGTGCTCTTAACC 59.483 55.000 0.00 0.00 36.72 2.85
780 785 0.517316 CCACTTGGCGTGCTCTTAAC 59.483 55.000 0.00 0.00 42.42 2.01
781 786 2.927004 CCACTTGGCGTGCTCTTAA 58.073 52.632 0.00 0.00 42.42 1.85
782 787 4.693532 CCACTTGGCGTGCTCTTA 57.306 55.556 0.00 0.00 42.42 2.10
792 797 2.846371 CTCTTTCGGAGCCACTTGG 58.154 57.895 0.00 0.00 35.08 3.61
800 805 1.272781 CAACTAGCGCTCTTTCGGAG 58.727 55.000 16.34 6.33 44.49 4.63
801 806 0.736325 GCAACTAGCGCTCTTTCGGA 60.736 55.000 16.34 0.00 0.00 4.55
802 807 1.710339 GCAACTAGCGCTCTTTCGG 59.290 57.895 16.34 0.60 0.00 4.30
812 817 3.823873 TGGCTATCTAGAGAGCAACTAGC 59.176 47.826 33.70 21.65 46.70 3.42
813 818 5.125417 GGATGGCTATCTAGAGAGCAACTAG 59.875 48.000 33.70 14.21 46.70 2.57
814 819 5.013547 GGATGGCTATCTAGAGAGCAACTA 58.986 45.833 33.70 20.00 46.70 2.24
815 820 3.831911 GGATGGCTATCTAGAGAGCAACT 59.168 47.826 33.70 20.51 46.70 3.16
816 821 3.056179 GGGATGGCTATCTAGAGAGCAAC 60.056 52.174 33.70 24.04 46.70 4.17
817 822 3.169099 GGGATGGCTATCTAGAGAGCAA 58.831 50.000 33.70 26.98 46.70 3.91
818 823 2.813907 GGGATGGCTATCTAGAGAGCA 58.186 52.381 33.70 22.50 46.70 4.26
819 824 1.748493 CGGGATGGCTATCTAGAGAGC 59.252 57.143 27.56 27.56 44.36 4.09
820 825 1.748493 GCGGGATGGCTATCTAGAGAG 59.252 57.143 10.12 10.12 33.68 3.20
821 826 1.075536 TGCGGGATGGCTATCTAGAGA 59.924 52.381 10.15 0.00 33.68 3.10
822 827 1.550327 TGCGGGATGGCTATCTAGAG 58.450 55.000 10.15 0.87 33.68 2.43
823 828 2.009681 TTGCGGGATGGCTATCTAGA 57.990 50.000 10.15 0.00 33.68 2.43
824 829 2.839486 TTTGCGGGATGGCTATCTAG 57.161 50.000 10.15 5.60 33.68 2.43
825 830 3.569194 TTTTTGCGGGATGGCTATCTA 57.431 42.857 10.15 0.00 33.68 1.98
900 912 1.447317 CTGTGTGTGAAGTGGGGCAC 61.447 60.000 0.00 0.00 35.63 5.01
929 946 1.460273 TTGGGCTTTGGGCGTTTCTC 61.460 55.000 0.00 0.00 42.94 2.87
938 955 2.639327 CGAGGGCTTTGGGCTTTGG 61.639 63.158 0.00 0.00 41.46 3.28
1092 1114 0.522915 CTTCCGCCTCGTACTCGTTC 60.523 60.000 0.00 0.00 38.33 3.95
2046 2681 5.528043 TCACACAAACTTGCATTGGTAAT 57.472 34.783 3.73 0.00 32.02 1.89
2047 2682 4.991153 TCACACAAACTTGCATTGGTAA 57.009 36.364 3.73 0.00 32.02 2.85
2048 2683 4.826733 AGATCACACAAACTTGCATTGGTA 59.173 37.500 3.73 0.00 32.02 3.25
2049 2684 3.638160 AGATCACACAAACTTGCATTGGT 59.362 39.130 3.73 0.00 32.02 3.67
2117 2786 1.132554 ATCCCTATCCCAGCCTGCAG 61.133 60.000 6.78 6.78 0.00 4.41
2577 5576 2.594592 GCGGCCAACAGAACCACT 60.595 61.111 2.24 0.00 0.00 4.00
2792 5821 1.276622 CTAGCACAGGTACAAGGGGT 58.723 55.000 0.00 0.00 0.00 4.95
2891 5927 3.714016 CGAAATCGCATGAAACACATACG 59.286 43.478 0.00 0.00 44.32 3.06
2942 5978 2.612672 CAAAACCATGCAATGCAACACA 59.387 40.909 13.45 0.00 44.97 3.72
2983 6019 2.030893 CGCAACACCATTGTCACAATCT 60.031 45.455 0.00 0.00 33.55 2.40
3004 6040 1.335496 TCTTAGCCAAAACCGTGCAAC 59.665 47.619 0.00 0.00 0.00 4.17
3060 6097 3.204526 CACAGCATGAAGAAGAGGATCC 58.795 50.000 2.48 2.48 39.69 3.36
3077 6114 0.944386 AGCAAAGCAACGTACCACAG 59.056 50.000 0.00 0.00 0.00 3.66
3120 6158 4.584325 AGGAAATATGCACACAAACACAGT 59.416 37.500 0.00 0.00 0.00 3.55
3146 6184 2.095059 GTCTGTAATTGCCAACCAGCAG 60.095 50.000 0.00 0.00 45.13 4.24
3171 6209 4.573900 AGATCACATGAAACAGAGACACC 58.426 43.478 0.00 0.00 0.00 4.16
3303 6435 6.683974 AGTCATAAAGCAAATCAACGCTAT 57.316 33.333 0.00 0.00 37.54 2.97
3321 6453 0.465460 AACGCACACCCACAAGTCAT 60.465 50.000 0.00 0.00 0.00 3.06
3343 6478 3.209097 GGCAACACACAGCACCGT 61.209 61.111 0.00 0.00 0.00 4.83
3369 6504 7.897864 ACACCACATCTATAGCTAGAATTACC 58.102 38.462 0.00 0.00 37.52 2.85
3378 6513 6.382570 AGAGAAGAAACACCACATCTATAGCT 59.617 38.462 0.00 0.00 0.00 3.32
3392 6528 8.006298 TCCTTTTATTTTGCAGAGAAGAAACA 57.994 30.769 0.00 0.00 0.00 2.83
3424 6560 3.487120 ACTCTGAACCACCCAAGTAAC 57.513 47.619 0.00 0.00 0.00 2.50
3427 6563 1.750682 GCAACTCTGAACCACCCAAGT 60.751 52.381 0.00 0.00 0.00 3.16
3437 6573 4.333649 CAGTTCTGTTTCTGCAACTCTGAA 59.666 41.667 0.00 0.00 36.21 3.02
3441 6577 4.787882 GCTTCAGTTCTGTTTCTGCAACTC 60.788 45.833 0.00 0.00 36.21 3.01
3456 6592 2.095567 CGCATACAAAGCAGCTTCAGTT 60.096 45.455 8.48 0.00 0.00 3.16
3458 6594 1.792993 GCGCATACAAAGCAGCTTCAG 60.793 52.381 8.48 7.06 0.00 3.02
3465 6601 0.728803 CAAAGCGCGCATACAAAGCA 60.729 50.000 35.10 0.00 0.00 3.91
3467 6603 0.976963 CACAAAGCGCGCATACAAAG 59.023 50.000 35.10 17.03 0.00 2.77
3469 6605 1.208870 CCACAAAGCGCGCATACAA 59.791 52.632 35.10 0.00 0.00 2.41
3477 6613 2.395367 TTAACGGTGCCACAAAGCGC 62.395 55.000 0.00 0.00 42.03 5.92
3478 6614 0.239879 ATTAACGGTGCCACAAAGCG 59.760 50.000 0.00 0.00 43.79 4.68
3479 6615 1.727857 CGATTAACGGTGCCACAAAGC 60.728 52.381 0.00 0.00 38.46 3.51
3480 6616 2.241259 CGATTAACGGTGCCACAAAG 57.759 50.000 0.00 0.00 38.46 2.77
3531 6668 2.223089 GCCAAACACAAAAGCTTGCAAG 60.223 45.455 22.44 22.44 35.84 4.01
3539 6676 3.123050 GGTAAGCTGCCAAACACAAAAG 58.877 45.455 0.00 0.00 0.00 2.27
3544 6681 1.170290 ACCGGTAAGCTGCCAAACAC 61.170 55.000 4.49 0.00 0.00 3.32
3547 6684 0.037590 ATGACCGGTAAGCTGCCAAA 59.962 50.000 7.34 0.00 0.00 3.28
3548 6685 0.037590 AATGACCGGTAAGCTGCCAA 59.962 50.000 7.34 0.00 0.00 4.52
3549 6686 0.906066 TAATGACCGGTAAGCTGCCA 59.094 50.000 7.34 0.00 0.00 4.92
3550 6687 1.134491 ACTAATGACCGGTAAGCTGCC 60.134 52.381 7.34 0.00 0.00 4.85
3551 6688 2.311124 ACTAATGACCGGTAAGCTGC 57.689 50.000 7.34 0.00 0.00 5.25
3552 6689 4.250464 TCAAACTAATGACCGGTAAGCTG 58.750 43.478 7.34 0.25 0.00 4.24
3553 6690 4.546829 TCAAACTAATGACCGGTAAGCT 57.453 40.909 7.34 0.00 0.00 3.74
3554 6691 5.813080 AATCAAACTAATGACCGGTAAGC 57.187 39.130 7.34 0.00 30.82 3.09
3555 6692 7.540745 CCAAAAATCAAACTAATGACCGGTAAG 59.459 37.037 7.34 5.57 30.82 2.34
3556 6693 7.014422 ACCAAAAATCAAACTAATGACCGGTAA 59.986 33.333 7.34 0.00 30.82 2.85
3557 6694 6.490721 ACCAAAAATCAAACTAATGACCGGTA 59.509 34.615 7.34 0.00 30.82 4.02
3558 6695 5.303333 ACCAAAAATCAAACTAATGACCGGT 59.697 36.000 6.92 6.92 30.82 5.28
3559 6696 5.778862 ACCAAAAATCAAACTAATGACCGG 58.221 37.500 0.00 0.00 30.82 5.28
3560 6697 7.700656 GGATACCAAAAATCAAACTAATGACCG 59.299 37.037 0.00 0.00 30.82 4.79
3561 6698 7.700656 CGGATACCAAAAATCAAACTAATGACC 59.299 37.037 0.00 0.00 30.82 4.02
3562 6699 8.241367 ACGGATACCAAAAATCAAACTAATGAC 58.759 33.333 0.00 0.00 30.82 3.06
3563 6700 8.343168 ACGGATACCAAAAATCAAACTAATGA 57.657 30.769 0.00 0.00 0.00 2.57
3564 6701 8.859156 CAACGGATACCAAAAATCAAACTAATG 58.141 33.333 0.00 0.00 0.00 1.90
3565 6702 8.032451 CCAACGGATACCAAAAATCAAACTAAT 58.968 33.333 0.00 0.00 0.00 1.73
3566 6703 7.371936 CCAACGGATACCAAAAATCAAACTAA 58.628 34.615 0.00 0.00 0.00 2.24
3567 6704 6.570764 GCCAACGGATACCAAAAATCAAACTA 60.571 38.462 0.00 0.00 0.00 2.24
3568 6705 5.778862 CCAACGGATACCAAAAATCAAACT 58.221 37.500 0.00 0.00 0.00 2.66
3569 6706 4.387559 GCCAACGGATACCAAAAATCAAAC 59.612 41.667 0.00 0.00 0.00 2.93
3570 6707 4.282195 AGCCAACGGATACCAAAAATCAAA 59.718 37.500 0.00 0.00 0.00 2.69
3571 6708 3.829601 AGCCAACGGATACCAAAAATCAA 59.170 39.130 0.00 0.00 0.00 2.57
3572 6709 3.426615 AGCCAACGGATACCAAAAATCA 58.573 40.909 0.00 0.00 0.00 2.57
3573 6710 5.767816 ATAGCCAACGGATACCAAAAATC 57.232 39.130 0.00 0.00 0.00 2.17
3574 6711 6.603997 TGTAATAGCCAACGGATACCAAAAAT 59.396 34.615 0.00 0.00 0.00 1.82
3575 6712 5.944599 TGTAATAGCCAACGGATACCAAAAA 59.055 36.000 0.00 0.00 0.00 1.94
3576 6713 5.498393 TGTAATAGCCAACGGATACCAAAA 58.502 37.500 0.00 0.00 0.00 2.44
3577 6714 5.100344 TGTAATAGCCAACGGATACCAAA 57.900 39.130 0.00 0.00 0.00 3.28
3578 6715 4.406326 TCTGTAATAGCCAACGGATACCAA 59.594 41.667 0.00 0.00 0.00 3.67
3579 6716 3.962063 TCTGTAATAGCCAACGGATACCA 59.038 43.478 0.00 0.00 0.00 3.25
3580 6717 4.304939 GTCTGTAATAGCCAACGGATACC 58.695 47.826 0.00 0.00 33.74 2.73
3581 6718 4.202182 TGGTCTGTAATAGCCAACGGATAC 60.202 45.833 0.00 0.00 33.74 2.24
3582 6719 3.962063 TGGTCTGTAATAGCCAACGGATA 59.038 43.478 0.00 0.00 33.74 2.59
3583 6720 2.769663 TGGTCTGTAATAGCCAACGGAT 59.230 45.455 0.00 0.00 33.74 4.18
3584 6721 2.093869 GTGGTCTGTAATAGCCAACGGA 60.094 50.000 0.00 0.00 35.38 4.69
3585 6722 2.093658 AGTGGTCTGTAATAGCCAACGG 60.094 50.000 0.00 0.00 35.38 4.44
3586 6723 2.930040 CAGTGGTCTGTAATAGCCAACG 59.070 50.000 0.00 0.00 35.38 4.10
3598 6735 4.631131 TGAAACACAGATACAGTGGTCTG 58.369 43.478 20.10 20.10 45.65 3.51
3599 6736 4.955811 TGAAACACAGATACAGTGGTCT 57.044 40.909 0.00 0.00 41.21 3.85
3600 6737 4.997395 ACATGAAACACAGATACAGTGGTC 59.003 41.667 0.00 0.00 41.21 4.02
3601 6738 4.756642 CACATGAAACACAGATACAGTGGT 59.243 41.667 0.00 0.00 41.21 4.16
3602 6739 4.996758 TCACATGAAACACAGATACAGTGG 59.003 41.667 0.00 0.00 41.21 4.00
3603 6740 6.732531 ATCACATGAAACACAGATACAGTG 57.267 37.500 0.00 0.00 42.56 3.66
3604 6741 7.445096 TGAAATCACATGAAACACAGATACAGT 59.555 33.333 0.00 0.00 0.00 3.55
3605 6742 7.809665 TGAAATCACATGAAACACAGATACAG 58.190 34.615 0.00 0.00 0.00 2.74
3606 6743 7.742556 TGAAATCACATGAAACACAGATACA 57.257 32.000 0.00 0.00 0.00 2.29
3609 6746 9.017509 AGTAATGAAATCACATGAAACACAGAT 57.982 29.630 0.00 0.00 0.00 2.90
3610 6747 8.394971 AGTAATGAAATCACATGAAACACAGA 57.605 30.769 0.00 0.00 0.00 3.41
3613 6750 9.559958 CCTAAGTAATGAAATCACATGAAACAC 57.440 33.333 0.00 0.00 0.00 3.32
3614 6751 8.243426 GCCTAAGTAATGAAATCACATGAAACA 58.757 33.333 0.00 0.00 0.00 2.83
3615 6752 8.243426 TGCCTAAGTAATGAAATCACATGAAAC 58.757 33.333 0.00 0.00 0.00 2.78
3616 6753 8.347004 TGCCTAAGTAATGAAATCACATGAAA 57.653 30.769 0.00 0.00 0.00 2.69
3617 6754 7.415541 GCTGCCTAAGTAATGAAATCACATGAA 60.416 37.037 0.00 0.00 0.00 2.57
3618 6755 6.038603 GCTGCCTAAGTAATGAAATCACATGA 59.961 38.462 0.00 0.00 0.00 3.07
3619 6756 6.039047 AGCTGCCTAAGTAATGAAATCACATG 59.961 38.462 0.00 0.00 0.00 3.21
3620 6757 6.125029 AGCTGCCTAAGTAATGAAATCACAT 58.875 36.000 0.00 0.00 0.00 3.21
3621 6758 5.500234 AGCTGCCTAAGTAATGAAATCACA 58.500 37.500 0.00 0.00 0.00 3.58
3622 6759 6.293135 GCTAGCTGCCTAAGTAATGAAATCAC 60.293 42.308 7.70 0.00 35.15 3.06
3623 6760 5.760253 GCTAGCTGCCTAAGTAATGAAATCA 59.240 40.000 7.70 0.00 35.15 2.57
3624 6761 5.994668 AGCTAGCTGCCTAAGTAATGAAATC 59.005 40.000 18.57 0.00 44.23 2.17
3625 6762 5.934781 AGCTAGCTGCCTAAGTAATGAAAT 58.065 37.500 18.57 0.00 44.23 2.17
3626 6763 5.129485 AGAGCTAGCTGCCTAAGTAATGAAA 59.871 40.000 24.99 0.00 44.23 2.69
3627 6764 4.651503 AGAGCTAGCTGCCTAAGTAATGAA 59.348 41.667 24.99 0.00 44.23 2.57
3628 6765 4.038522 CAGAGCTAGCTGCCTAAGTAATGA 59.961 45.833 24.99 0.00 44.23 2.57
3629 6766 4.305769 CAGAGCTAGCTGCCTAAGTAATG 58.694 47.826 24.99 2.21 44.23 1.90
3630 6767 3.323403 CCAGAGCTAGCTGCCTAAGTAAT 59.677 47.826 24.99 0.00 44.23 1.89
3631 6768 2.695666 CCAGAGCTAGCTGCCTAAGTAA 59.304 50.000 24.99 0.00 44.23 2.24
3632 6769 2.311463 CCAGAGCTAGCTGCCTAAGTA 58.689 52.381 24.99 0.00 44.23 2.24
3633 6770 1.118838 CCAGAGCTAGCTGCCTAAGT 58.881 55.000 24.99 0.00 44.23 2.24
3634 6771 1.068434 GACCAGAGCTAGCTGCCTAAG 59.932 57.143 24.99 11.00 44.23 2.18
3637 6774 1.001503 AGACCAGAGCTAGCTGCCT 59.998 57.895 24.99 11.44 44.23 4.75
3649 6840 2.804527 CAACACACTGTCATCAGACCAG 59.195 50.000 2.17 0.00 44.33 4.00
3671 6862 0.179140 AAAACCGTGCAGTGCAAGTG 60.179 50.000 25.96 19.80 41.47 3.16
3672 6863 0.179140 CAAAACCGTGCAGTGCAAGT 60.179 50.000 25.96 20.37 41.47 3.16
3673 6864 0.871163 CCAAAACCGTGCAGTGCAAG 60.871 55.000 21.67 22.03 41.47 4.01
3683 6880 8.669946 AATAATCATTTTTGAACCAAAACCGT 57.330 26.923 4.55 0.00 42.02 4.83
3703 6900 9.461312 ACAGTGTAACACCAATGTCATAATAAT 57.539 29.630 0.00 0.00 39.21 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.