Multiple sequence alignment - TraesCS3D01G422000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G422000 chr3D 100.000 3545 0 0 613 4157 533960693 533957149 0.000000e+00 6547.0
1 TraesCS3D01G422000 chr3D 93.608 1940 108 8 920 2852 534115330 534117260 0.000000e+00 2881.0
2 TraesCS3D01G422000 chr3D 87.644 1910 181 32 901 2767 535399641 535401538 0.000000e+00 2169.0
3 TraesCS3D01G422000 chr3D 100.000 374 0 0 1 374 533961305 533960932 0.000000e+00 691.0
4 TraesCS3D01G422000 chr3D 90.000 390 35 2 2466 2852 534762952 534763340 6.200000e-138 501.0
5 TraesCS3D01G422000 chr3D 88.442 199 17 4 3804 4000 533921752 533921558 6.950000e-58 235.0
6 TraesCS3D01G422000 chr3D 86.111 144 16 4 3219 3360 534117558 534117699 7.200000e-33 152.0
7 TraesCS3D01G422000 chr3D 94.286 70 4 0 3549 3618 534765623 534765692 1.580000e-19 108.0
8 TraesCS3D01G422000 chr3D 85.849 106 7 4 4050 4155 533921422 533921325 5.680000e-19 106.0
9 TraesCS3D01G422000 chr3B 93.009 2918 144 17 626 3517 706029491 706026608 0.000000e+00 4204.0
10 TraesCS3D01G422000 chr3B 93.214 2004 100 20 867 2852 706182530 706184515 0.000000e+00 2915.0
11 TraesCS3D01G422000 chr3B 89.404 1595 131 16 1202 2767 706754685 706756270 0.000000e+00 1975.0
12 TraesCS3D01G422000 chr3B 92.723 1278 75 9 1567 2844 706711688 706712947 0.000000e+00 1829.0
13 TraesCS3D01G422000 chr3B 85.557 1087 122 15 1707 2767 706185586 706186663 0.000000e+00 1105.0
14 TraesCS3D01G422000 chr3B 91.731 387 31 1 2466 2852 706560941 706561326 1.700000e-148 536.0
15 TraesCS3D01G422000 chr3B 89.302 430 27 4 3572 4000 706026615 706026204 4.760000e-144 521.0
16 TraesCS3D01G422000 chr3B 90.501 379 35 1 2466 2844 706603936 706604313 2.230000e-137 499.0
17 TraesCS3D01G422000 chr3B 88.418 354 40 1 1 353 706029924 706029571 3.840000e-115 425.0
18 TraesCS3D01G422000 chr3B 79.568 509 69 13 3141 3640 706185098 706185580 8.610000e-87 331.0
19 TraesCS3D01G422000 chr3B 86.806 144 14 5 3219 3360 706713249 706713389 5.560000e-34 156.0
20 TraesCS3D01G422000 chr3B 85.211 142 18 3 3219 3359 706184810 706184949 4.330000e-30 143.0
21 TraesCS3D01G422000 chr3B 84.000 125 17 3 3116 3239 706756788 706756910 2.630000e-22 117.0
22 TraesCS3D01G422000 chr3B 95.714 70 3 0 3549 3618 706606250 706606319 3.400000e-21 113.0
23 TraesCS3D01G422000 chr3B 84.762 105 8 4 4050 4154 705996852 705996756 9.510000e-17 99.0
24 TraesCS3D01G422000 chr4D 82.692 1456 208 30 1173 2602 98015643 98014206 0.000000e+00 1253.0
25 TraesCS3D01G422000 chr4D 82.265 998 138 20 1607 2599 374041175 374040212 0.000000e+00 826.0
26 TraesCS3D01G422000 chr4B 82.603 1460 210 29 1173 2602 139593885 139592440 0.000000e+00 1249.0
27 TraesCS3D01G422000 chr4A 82.317 1459 217 24 1173 2602 478191186 478192632 0.000000e+00 1227.0
28 TraesCS3D01G422000 chr4A 79.715 1405 237 21 1198 2587 90439257 90440628 0.000000e+00 972.0
29 TraesCS3D01G422000 chr3A 86.612 1098 118 17 1691 2772 670545601 670546685 0.000000e+00 1186.0
30 TraesCS3D01G422000 chr3A 84.010 788 86 18 925 1691 670535484 670536252 0.000000e+00 721.0
31 TraesCS3D01G422000 chr3A 84.815 270 30 6 3732 4000 669768490 669768231 1.150000e-65 261.0
32 TraesCS3D01G422000 chr3A 80.693 202 28 5 3047 3238 670546796 670546996 3.350000e-31 147.0
33 TraesCS3D01G422000 chr3A 84.906 106 8 4 4050 4155 669768078 669767981 2.640000e-17 100.0
34 TraesCS3D01G422000 chr5A 78.218 101 16 6 729 827 598074118 598074022 4.490000e-05 60.2
35 TraesCS3D01G422000 chrUn 88.000 50 3 2 3277 3326 226754478 226754524 5.810000e-04 56.5
36 TraesCS3D01G422000 chrUn 88.000 50 3 2 3277 3326 300244419 300244465 5.810000e-04 56.5
37 TraesCS3D01G422000 chrUn 88.000 50 3 2 3277 3326 300249131 300249177 5.810000e-04 56.5
38 TraesCS3D01G422000 chr6B 88.000 50 3 2 3277 3326 73666336 73666382 5.810000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G422000 chr3D 533957149 533961305 4156 True 3619.000000 6547 100.0000 1 4157 2 chr3D.!!$R2 4156
1 TraesCS3D01G422000 chr3D 535399641 535401538 1897 False 2169.000000 2169 87.6440 901 2767 1 chr3D.!!$F1 1866
2 TraesCS3D01G422000 chr3D 534115330 534117699 2369 False 1516.500000 2881 89.8595 920 3360 2 chr3D.!!$F2 2440
3 TraesCS3D01G422000 chr3D 534762952 534765692 2740 False 304.500000 501 92.1430 2466 3618 2 chr3D.!!$F3 1152
4 TraesCS3D01G422000 chr3B 706026204 706029924 3720 True 1716.666667 4204 90.2430 1 4000 3 chr3B.!!$R2 3999
5 TraesCS3D01G422000 chr3B 706182530 706186663 4133 False 1123.500000 2915 85.8875 867 3640 4 chr3B.!!$F2 2773
6 TraesCS3D01G422000 chr3B 706754685 706756910 2225 False 1046.000000 1975 86.7020 1202 3239 2 chr3B.!!$F5 2037
7 TraesCS3D01G422000 chr3B 706711688 706713389 1701 False 992.500000 1829 89.7645 1567 3360 2 chr3B.!!$F4 1793
8 TraesCS3D01G422000 chr3B 706603936 706606319 2383 False 306.000000 499 93.1075 2466 3618 2 chr3B.!!$F3 1152
9 TraesCS3D01G422000 chr4D 98014206 98015643 1437 True 1253.000000 1253 82.6920 1173 2602 1 chr4D.!!$R1 1429
10 TraesCS3D01G422000 chr4D 374040212 374041175 963 True 826.000000 826 82.2650 1607 2599 1 chr4D.!!$R2 992
11 TraesCS3D01G422000 chr4B 139592440 139593885 1445 True 1249.000000 1249 82.6030 1173 2602 1 chr4B.!!$R1 1429
12 TraesCS3D01G422000 chr4A 478191186 478192632 1446 False 1227.000000 1227 82.3170 1173 2602 1 chr4A.!!$F2 1429
13 TraesCS3D01G422000 chr4A 90439257 90440628 1371 False 972.000000 972 79.7150 1198 2587 1 chr4A.!!$F1 1389
14 TraesCS3D01G422000 chr3A 670535484 670536252 768 False 721.000000 721 84.0100 925 1691 1 chr3A.!!$F1 766
15 TraesCS3D01G422000 chr3A 670545601 670546996 1395 False 666.500000 1186 83.6525 1691 3238 2 chr3A.!!$F2 1547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
130 132 0.039618 GGAGAAATTGGGCCACCTCA 59.960 55.0 5.23 0.0 37.76 3.86 F
707 729 0.248949 GTACTGTCGGATTCGCCTCC 60.249 60.0 0.00 0.0 36.13 4.30 F
823 846 0.467290 TCTCCACACCCAAAACCAGC 60.467 55.0 0.00 0.0 0.00 4.85 F
2448 2595 0.250640 ACTGGCAAGCTCAACCTGAG 60.251 55.0 11.78 0.0 46.90 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2075 2161 5.216566 TGTCAAATTTACATAGCTCGTGC 57.783 39.130 0.07 0.07 40.05 5.34 R
2448 2595 0.179018 ACCTGACTTGTGCCAGAACC 60.179 55.000 0.00 0.00 32.37 3.62 R
2772 5156 1.153588 GGCGATTGCAACCCAATGG 60.154 57.895 0.00 0.00 44.02 3.16 R
3555 8026 0.179134 ACTGATAACCTGACGCTCGC 60.179 55.000 0.00 0.00 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.620556 TCCCACAGGATCCTTGAAGC 59.379 55.000 13.00 0.00 37.19 3.86
34 35 0.329261 CCCACAGGATCCTTGAAGCA 59.671 55.000 13.00 0.00 33.47 3.91
44 45 1.417517 TCCTTGAAGCAGTGCTCAAGA 59.582 47.619 34.52 25.06 41.53 3.02
91 93 2.045326 TGTGTAGGGAGGGGAACATACT 59.955 50.000 0.00 0.00 0.00 2.12
93 95 1.416772 GTAGGGAGGGGAACATACTGC 59.583 57.143 0.00 0.00 0.00 4.40
95 97 1.279025 GGGAGGGGAACATACTGCCA 61.279 60.000 0.00 0.00 41.73 4.92
101 103 0.940126 GGAACATACTGCCATGCTCG 59.060 55.000 0.00 0.00 0.00 5.03
130 132 0.039618 GGAGAAATTGGGCCACCTCA 59.960 55.000 5.23 0.00 37.76 3.86
131 133 1.342374 GGAGAAATTGGGCCACCTCAT 60.342 52.381 5.23 0.00 37.76 2.90
141 143 1.718757 GCCACCTCATGTCGATTGCC 61.719 60.000 0.00 0.00 0.00 4.52
143 145 1.293924 CACCTCATGTCGATTGCCTC 58.706 55.000 0.00 0.00 0.00 4.70
161 163 2.037381 CCTCGCCTTATTTACCCTCCTC 59.963 54.545 0.00 0.00 0.00 3.71
164 166 2.224305 CGCCTTATTTACCCTCCTCCAG 60.224 54.545 0.00 0.00 0.00 3.86
171 173 0.468214 TACCCTCCTCCAGCTCATCG 60.468 60.000 0.00 0.00 0.00 3.84
180 182 0.526954 CCAGCTCATCGCCAAAATGC 60.527 55.000 0.00 0.00 40.39 3.56
194 196 1.102978 AAATGCGTGCTACCATTCCC 58.897 50.000 0.00 0.00 31.67 3.97
206 208 2.617215 ATTCCCCCACACCCCTCC 60.617 66.667 0.00 0.00 0.00 4.30
245 247 2.421619 CCAAGGAGCTTCTTCACTGAC 58.578 52.381 3.55 0.00 0.00 3.51
257 259 3.255888 TCTTCACTGACGAGCACATAAGT 59.744 43.478 0.00 0.00 0.00 2.24
263 265 0.673644 ACGAGCACATAAGTGGCACC 60.674 55.000 15.27 0.00 45.98 5.01
275 277 1.918293 TGGCACCATCTTCTCCGGT 60.918 57.895 0.00 0.00 0.00 5.28
277 279 1.153349 GCACCATCTTCTCCGGTCC 60.153 63.158 0.00 0.00 0.00 4.46
291 293 4.309950 GTCCGCGGTGGTCCAACT 62.310 66.667 27.15 0.00 39.52 3.16
303 305 2.303022 TGGTCCAACTGAGACAATCCTC 59.697 50.000 0.00 0.00 35.89 3.71
304 306 2.303022 GGTCCAACTGAGACAATCCTCA 59.697 50.000 0.00 0.00 40.57 3.86
319 321 5.666718 ACAATCCTCATTCCTCATCTTCTCT 59.333 40.000 0.00 0.00 0.00 3.10
324 326 5.816777 CCTCATTCCTCATCTTCTCTGAAAC 59.183 44.000 0.00 0.00 0.00 2.78
329 331 6.918067 TCCTCATCTTCTCTGAAACTAACA 57.082 37.500 0.00 0.00 0.00 2.41
332 334 5.470368 TCATCTTCTCTGAAACTAACACCG 58.530 41.667 0.00 0.00 0.00 4.94
335 337 3.026630 TCTCTGAAACTAACACCGCAG 57.973 47.619 0.00 0.00 0.00 5.18
336 338 2.364324 TCTCTGAAACTAACACCGCAGT 59.636 45.455 0.00 0.00 0.00 4.40
337 339 2.731976 CTCTGAAACTAACACCGCAGTC 59.268 50.000 0.00 0.00 0.00 3.51
370 372 2.365068 CGTCTGTCGTTCCACTGCG 61.365 63.158 0.00 0.00 34.52 5.18
371 373 2.355837 TCTGTCGTTCCACTGCGC 60.356 61.111 0.00 0.00 0.00 6.09
373 375 2.355837 TGTCGTTCCACTGCGCTC 60.356 61.111 9.73 0.00 0.00 5.03
639 641 1.403687 GGCTATCCTTGAGCTCCCGT 61.404 60.000 12.15 0.00 39.98 5.28
665 687 1.366111 CGGATTCCGCCATCAACGTT 61.366 55.000 12.95 0.00 41.17 3.99
676 698 2.859165 ATCAACGTTGATGTCCCTGT 57.141 45.000 36.26 15.86 45.63 4.00
692 714 0.745128 CTGTCGAGCTCCTCCGTACT 60.745 60.000 8.47 0.00 0.00 2.73
707 729 0.248949 GTACTGTCGGATTCGCCTCC 60.249 60.000 0.00 0.00 36.13 4.30
710 732 4.587189 GTCGGATTCGCCTCCCGG 62.587 72.222 0.00 0.00 43.16 5.73
726 748 2.434359 GGCTTCGCCGCTGTTAGT 60.434 61.111 0.00 0.00 39.62 2.24
761 784 6.208599 TCATGTGGTTCTCAAATTTTAGGGTC 59.791 38.462 0.00 0.00 0.00 4.46
794 817 2.624838 AGAAATGTTGCCAGTGTCCAAG 59.375 45.455 0.00 0.00 0.00 3.61
805 828 3.304928 CCAGTGTCCAAGCACATTTTCTC 60.305 47.826 0.00 0.00 41.52 2.87
814 837 1.541588 GCACATTTTCTCTCCACACCC 59.458 52.381 0.00 0.00 0.00 4.61
823 846 0.467290 TCTCCACACCCAAAACCAGC 60.467 55.000 0.00 0.00 0.00 4.85
824 847 0.468029 CTCCACACCCAAAACCAGCT 60.468 55.000 0.00 0.00 0.00 4.24
843 875 5.221126 CCAGCTTTCAAATTATAGGGCTGTC 60.221 44.000 16.02 0.00 42.68 3.51
844 876 5.591877 CAGCTTTCAAATTATAGGGCTGTCT 59.408 40.000 11.79 0.00 40.36 3.41
845 877 6.096001 CAGCTTTCAAATTATAGGGCTGTCTT 59.904 38.462 11.79 0.00 40.36 3.01
846 878 6.096001 AGCTTTCAAATTATAGGGCTGTCTTG 59.904 38.462 0.00 0.00 0.00 3.02
847 879 6.681368 GCTTTCAAATTATAGGGCTGTCTTGG 60.681 42.308 0.00 0.00 0.00 3.61
848 880 5.708736 TCAAATTATAGGGCTGTCTTGGA 57.291 39.130 0.00 0.00 0.00 3.53
849 881 5.684704 TCAAATTATAGGGCTGTCTTGGAG 58.315 41.667 0.00 0.00 0.00 3.86
850 882 5.428457 TCAAATTATAGGGCTGTCTTGGAGA 59.572 40.000 0.00 0.00 0.00 3.71
851 883 6.101734 TCAAATTATAGGGCTGTCTTGGAGAT 59.898 38.462 0.00 0.00 0.00 2.75
852 884 4.963318 TTATAGGGCTGTCTTGGAGATG 57.037 45.455 0.00 0.00 0.00 2.90
853 885 0.833287 TAGGGCTGTCTTGGAGATGC 59.167 55.000 0.00 0.00 0.00 3.91
854 886 0.913451 AGGGCTGTCTTGGAGATGCT 60.913 55.000 0.00 0.00 30.85 3.79
860 892 3.365767 GCTGTCTTGGAGATGCTTTGAAC 60.366 47.826 0.00 0.00 0.00 3.18
861 893 3.149196 TGTCTTGGAGATGCTTTGAACC 58.851 45.455 0.00 0.00 0.00 3.62
887 919 1.993301 CCCTAGGAAAAGTTCAGGGGT 59.007 52.381 11.48 0.00 38.65 4.95
891 923 5.458508 CCCTAGGAAAAGTTCAGGGGTTAAA 60.459 44.000 11.48 0.00 38.65 1.52
963 1006 0.809636 TCCACTTCACACACAGCACG 60.810 55.000 0.00 0.00 0.00 5.34
965 1019 2.180204 ACTTCACACACAGCACGCC 61.180 57.895 0.00 0.00 0.00 5.68
1061 1129 2.507324 GCGGAGTTCGAGTGCCTC 60.507 66.667 0.00 0.00 42.43 4.70
1159 1227 4.752879 GCAAGTCCGCCGCCTGTA 62.753 66.667 0.00 0.00 0.00 2.74
1161 1229 4.430765 AAGTCCGCCGCCTGTACG 62.431 66.667 0.00 0.00 0.00 3.67
2075 2161 7.339212 TCCATTAATTGGTTCAATCCTACACTG 59.661 37.037 0.00 0.00 46.52 3.66
2448 2595 0.250640 ACTGGCAAGCTCAACCTGAG 60.251 55.000 11.78 0.00 46.90 3.35
2464 2611 0.836606 TGAGGTTCTGGCACAAGTCA 59.163 50.000 0.00 0.00 38.70 3.41
2772 5156 1.886542 CCCTTTTGCCAACTACTGTCC 59.113 52.381 0.00 0.00 0.00 4.02
2785 5169 0.105760 ACTGTCCCATTGGGTTGCAA 60.106 50.000 21.31 0.00 44.74 4.08
2844 5228 5.069914 TCTGGAAGCTGTTAGTGTTCTGTTA 59.930 40.000 0.00 0.00 0.00 2.41
2872 5256 0.396435 TGTGCACCAAGGGTAGACAG 59.604 55.000 15.69 0.00 32.11 3.51
2873 5257 0.955919 GTGCACCAAGGGTAGACAGC 60.956 60.000 5.22 0.00 32.11 4.40
2874 5258 1.377333 GCACCAAGGGTAGACAGCC 60.377 63.158 0.00 0.00 43.09 4.85
2882 5266 1.760192 GGGTAGACAGCCGTTAGAGA 58.240 55.000 0.00 0.00 31.35 3.10
2883 5267 2.308690 GGGTAGACAGCCGTTAGAGAT 58.691 52.381 0.00 0.00 31.35 2.75
2884 5268 2.034812 GGGTAGACAGCCGTTAGAGATG 59.965 54.545 0.00 0.00 31.35 2.90
2885 5269 2.688958 GGTAGACAGCCGTTAGAGATGT 59.311 50.000 0.00 0.00 0.00 3.06
2886 5270 2.949451 AGACAGCCGTTAGAGATGTG 57.051 50.000 0.00 0.00 0.00 3.21
2887 5271 2.171840 AGACAGCCGTTAGAGATGTGT 58.828 47.619 0.00 0.00 0.00 3.72
2888 5272 2.563179 AGACAGCCGTTAGAGATGTGTT 59.437 45.455 0.00 0.00 0.00 3.32
2889 5273 3.006967 AGACAGCCGTTAGAGATGTGTTT 59.993 43.478 0.00 0.00 0.00 2.83
2890 5274 3.740115 ACAGCCGTTAGAGATGTGTTTT 58.260 40.909 0.00 0.00 0.00 2.43
2891 5275 3.746492 ACAGCCGTTAGAGATGTGTTTTC 59.254 43.478 0.00 0.00 0.00 2.29
2892 5276 3.745975 CAGCCGTTAGAGATGTGTTTTCA 59.254 43.478 0.00 0.00 0.00 2.69
2893 5277 3.997021 AGCCGTTAGAGATGTGTTTTCAG 59.003 43.478 0.00 0.00 0.00 3.02
2894 5278 3.746492 GCCGTTAGAGATGTGTTTTCAGT 59.254 43.478 0.00 0.00 0.00 3.41
2895 5279 4.377431 GCCGTTAGAGATGTGTTTTCAGTG 60.377 45.833 0.00 0.00 0.00 3.66
2896 5280 4.750098 CCGTTAGAGATGTGTTTTCAGTGT 59.250 41.667 0.00 0.00 0.00 3.55
2897 5281 5.107453 CCGTTAGAGATGTGTTTTCAGTGTC 60.107 44.000 0.00 0.00 0.00 3.67
2898 5282 5.462068 CGTTAGAGATGTGTTTTCAGTGTCA 59.538 40.000 0.00 0.00 0.00 3.58
2899 5283 6.346120 CGTTAGAGATGTGTTTTCAGTGTCAG 60.346 42.308 0.00 0.00 0.00 3.51
2923 5307 4.988540 CCGTTAGAGATGTGTTTTCAGTGA 59.011 41.667 0.00 0.00 0.00 3.41
2938 5322 1.066573 CAGTGACTGAAGATTCGCCCT 60.067 52.381 6.79 0.00 32.44 5.19
3021 5406 3.407698 TGCACATTCACGACTACCATTT 58.592 40.909 0.00 0.00 0.00 2.32
3025 5410 5.382303 CACATTCACGACTACCATTTTGTC 58.618 41.667 0.00 0.00 0.00 3.18
3028 5413 3.850207 CGACTACCATTTTGTCGCG 57.150 52.632 0.00 0.00 45.00 5.87
3112 5505 1.663379 TAGGCCGTGATCTGGTGACG 61.663 60.000 0.00 0.00 0.00 4.35
3138 5531 4.295051 GTGTTACATTGCACGGTTTTGAT 58.705 39.130 0.00 0.00 0.00 2.57
3268 5985 2.757868 TCTTTTTAACATGGGGATGGCG 59.242 45.455 0.00 0.00 0.00 5.69
3270 5987 1.380403 TTTAACATGGGGATGGCGCG 61.380 55.000 0.00 0.00 0.00 6.86
3352 6076 4.983538 CAGTACATTGTGAAGCAATTGCAA 59.016 37.500 30.89 16.86 44.82 4.08
3361 6085 3.493877 TGAAGCAATTGCAAAATTGGACG 59.506 39.130 30.89 0.00 45.16 4.79
3394 6118 5.362430 AGCAGGTTCTGAAGATCTACTAAGG 59.638 44.000 0.00 0.00 32.44 2.69
3480 6204 6.660521 TGGATAAGCTGTGATGATTTTTCTGT 59.339 34.615 0.00 0.00 0.00 3.41
3502 6227 2.158475 AGAAATTGTTGAGGGTGGCTGA 60.158 45.455 0.00 0.00 0.00 4.26
3514 7985 3.650950 GGCTGACTTGCCCCAGGA 61.651 66.667 0.00 0.00 46.82 3.86
3515 7986 2.045536 GCTGACTTGCCCCAGGAG 60.046 66.667 0.00 0.00 0.00 3.69
3516 7987 2.673523 CTGACTTGCCCCAGGAGG 59.326 66.667 0.00 0.00 0.00 4.30
3517 7988 2.121963 TGACTTGCCCCAGGAGGT 60.122 61.111 0.00 0.00 0.00 3.85
3518 7989 2.190488 CTGACTTGCCCCAGGAGGTC 62.190 65.000 0.00 0.00 0.00 3.85
3519 7990 2.936032 ACTTGCCCCAGGAGGTCC 60.936 66.667 0.00 0.00 0.00 4.46
3520 7991 3.732849 CTTGCCCCAGGAGGTCCC 61.733 72.222 0.00 0.00 36.42 4.46
3522 7993 3.829311 TTGCCCCAGGAGGTCCCTT 62.829 63.158 0.00 0.00 44.85 3.95
3523 7994 3.412408 GCCCCAGGAGGTCCCTTC 61.412 72.222 0.00 0.00 44.85 3.46
3524 7995 2.124996 CCCCAGGAGGTCCCTTCA 59.875 66.667 0.00 0.00 44.85 3.02
3525 7996 1.997874 CCCCAGGAGGTCCCTTCAG 60.998 68.421 0.00 0.00 44.85 3.02
3526 7997 2.674220 CCCAGGAGGTCCCTTCAGC 61.674 68.421 0.00 0.00 44.85 4.26
3527 7998 2.581354 CAGGAGGTCCCTTCAGCG 59.419 66.667 0.00 0.00 44.85 5.18
3528 7999 3.394836 AGGAGGTCCCTTCAGCGC 61.395 66.667 0.00 0.00 44.85 5.92
3529 8000 4.475135 GGAGGTCCCTTCAGCGCC 62.475 72.222 2.29 0.00 0.00 6.53
3530 8001 4.821589 GAGGTCCCTTCAGCGCCG 62.822 72.222 2.29 0.00 0.00 6.46
3532 8003 4.821589 GGTCCCTTCAGCGCCGAG 62.822 72.222 2.29 0.00 0.00 4.63
3533 8004 3.760035 GTCCCTTCAGCGCCGAGA 61.760 66.667 2.29 0.00 0.00 4.04
3534 8005 2.759973 TCCCTTCAGCGCCGAGAT 60.760 61.111 2.29 0.00 0.00 2.75
3535 8006 2.279784 CCCTTCAGCGCCGAGATC 60.280 66.667 2.29 0.00 0.00 2.75
3536 8007 2.279784 CCTTCAGCGCCGAGATCC 60.280 66.667 2.29 0.00 0.00 3.36
3537 8008 2.279784 CTTCAGCGCCGAGATCCC 60.280 66.667 2.29 0.00 0.00 3.85
3538 8009 2.759973 TTCAGCGCCGAGATCCCT 60.760 61.111 2.29 0.00 0.00 4.20
3539 8010 2.967929 CTTCAGCGCCGAGATCCCTG 62.968 65.000 2.29 0.00 0.00 4.45
3543 8014 4.598894 CGCCGAGATCCCTGCTGG 62.599 72.222 1.89 1.89 0.00 4.85
3544 8015 4.925861 GCCGAGATCCCTGCTGGC 62.926 72.222 3.63 0.00 35.04 4.85
3545 8016 4.247380 CCGAGATCCCTGCTGGCC 62.247 72.222 3.63 0.00 0.00 5.36
3546 8017 4.598894 CGAGATCCCTGCTGGCCG 62.599 72.222 3.63 0.00 0.00 6.13
3547 8018 4.925861 GAGATCCCTGCTGGCCGC 62.926 72.222 11.92 11.92 39.77 6.53
3565 8036 4.749310 AGCCTTGGCGAGCGTCAG 62.749 66.667 5.95 0.00 0.00 3.51
3567 8038 4.379243 CCTTGGCGAGCGTCAGGT 62.379 66.667 5.90 0.00 0.00 4.00
3568 8039 2.357517 CTTGGCGAGCGTCAGGTT 60.358 61.111 0.00 0.00 0.00 3.50
3569 8040 1.080093 CTTGGCGAGCGTCAGGTTA 60.080 57.895 0.00 0.00 0.00 2.85
3570 8041 0.460284 CTTGGCGAGCGTCAGGTTAT 60.460 55.000 0.00 0.00 0.00 1.89
3571 8042 0.459585 TTGGCGAGCGTCAGGTTATC 60.460 55.000 0.00 0.00 0.00 1.75
3572 8043 1.141019 GGCGAGCGTCAGGTTATCA 59.859 57.895 0.00 0.00 0.00 2.15
3573 8044 0.872021 GGCGAGCGTCAGGTTATCAG 60.872 60.000 0.00 0.00 0.00 2.90
3657 8128 3.304829 GGCAGAAGAAGAGGAGAGGTAT 58.695 50.000 0.00 0.00 0.00 2.73
3669 8140 3.277936 AGGAGAGGTATAGGGGAAAGGTT 59.722 47.826 0.00 0.00 0.00 3.50
3671 8142 5.042065 AGGAGAGGTATAGGGGAAAGGTTTA 60.042 44.000 0.00 0.00 0.00 2.01
3673 8144 5.225227 AGAGGTATAGGGGAAAGGTTTAGG 58.775 45.833 0.00 0.00 0.00 2.69
3674 8145 4.313362 AGGTATAGGGGAAAGGTTTAGGG 58.687 47.826 0.00 0.00 0.00 3.53
3675 8146 4.050037 GGTATAGGGGAAAGGTTTAGGGT 58.950 47.826 0.00 0.00 0.00 4.34
3676 8147 4.479796 GGTATAGGGGAAAGGTTTAGGGTT 59.520 45.833 0.00 0.00 0.00 4.11
3677 8148 5.043881 GGTATAGGGGAAAGGTTTAGGGTTT 60.044 44.000 0.00 0.00 0.00 3.27
3679 8150 2.792967 AGGGGAAAGGTTTAGGGTTTCA 59.207 45.455 0.00 0.00 32.77 2.69
3682 8153 4.220724 GGGAAAGGTTTAGGGTTTCACTT 58.779 43.478 0.00 0.00 31.96 3.16
3683 8154 4.038763 GGGAAAGGTTTAGGGTTTCACTTG 59.961 45.833 0.00 0.00 31.96 3.16
3684 8155 4.038763 GGAAAGGTTTAGGGTTTCACTTGG 59.961 45.833 0.00 0.00 32.77 3.61
3685 8156 3.238788 AGGTTTAGGGTTTCACTTGGG 57.761 47.619 0.00 0.00 0.00 4.12
3686 8157 2.516702 AGGTTTAGGGTTTCACTTGGGT 59.483 45.455 0.00 0.00 0.00 4.51
3687 8158 2.626266 GGTTTAGGGTTTCACTTGGGTG 59.374 50.000 0.00 0.00 44.23 4.61
3688 8159 3.293337 GTTTAGGGTTTCACTTGGGTGT 58.707 45.455 0.00 0.00 43.41 4.16
3689 8160 4.463070 GTTTAGGGTTTCACTTGGGTGTA 58.537 43.478 0.00 0.00 43.41 2.90
3690 8161 2.651382 AGGGTTTCACTTGGGTGTAC 57.349 50.000 0.00 0.00 43.41 2.90
3691 8162 2.132686 AGGGTTTCACTTGGGTGTACT 58.867 47.619 0.00 0.00 43.41 2.73
3692 8163 2.105993 AGGGTTTCACTTGGGTGTACTC 59.894 50.000 0.00 0.00 43.41 2.59
3693 8164 2.105993 GGGTTTCACTTGGGTGTACTCT 59.894 50.000 0.00 0.00 43.41 3.24
3710 8181 2.023501 ACTCTCACCCCTTATCTCAGCT 60.024 50.000 0.00 0.00 0.00 4.24
3729 8200 2.630158 CTGTCCAGCTCCTTGAGATTG 58.370 52.381 0.00 0.00 0.00 2.67
3753 8224 9.725019 TTGACAATACACAAATGAATCTAGACT 57.275 29.630 0.00 0.00 0.00 3.24
3787 8258 5.048782 TGGTTTCTTTCATGCTGATACACAC 60.049 40.000 0.00 0.00 0.00 3.82
3845 8316 7.951347 AATGAATAATCACCAGAAGCTCTTT 57.049 32.000 0.00 0.00 38.69 2.52
3859 8330 6.093219 CAGAAGCTCTTTCAAGCATTTAGCTA 59.907 38.462 0.00 0.00 44.75 3.32
3860 8331 6.827762 AGAAGCTCTTTCAAGCATTTAGCTAT 59.172 34.615 0.00 0.00 44.75 2.97
3861 8332 7.338957 AGAAGCTCTTTCAAGCATTTAGCTATT 59.661 33.333 0.00 0.00 44.75 1.73
3971 8442 9.034544 CCAAACAAAAAGAGGAATCTGTTAAAG 57.965 33.333 0.00 0.00 0.00 1.85
3974 8445 8.753497 ACAAAAAGAGGAATCTGTTAAAGAGT 57.247 30.769 0.00 0.00 38.67 3.24
3985 8456 8.697507 AATCTGTTAAAGAGTTGGAAGTGAAT 57.302 30.769 0.00 0.00 38.67 2.57
4000 8471 7.669427 TGGAAGTGAATTGCAATAATCTGTTT 58.331 30.769 13.39 4.14 36.14 2.83
4001 8472 8.801299 TGGAAGTGAATTGCAATAATCTGTTTA 58.199 29.630 13.39 0.00 36.14 2.01
4002 8473 9.294030 GGAAGTGAATTGCAATAATCTGTTTAG 57.706 33.333 13.39 0.00 0.00 1.85
4003 8474 9.294030 GAAGTGAATTGCAATAATCTGTTTAGG 57.706 33.333 13.39 0.00 0.00 2.69
4004 8475 8.579850 AGTGAATTGCAATAATCTGTTTAGGA 57.420 30.769 13.39 0.00 0.00 2.94
4005 8476 9.023962 AGTGAATTGCAATAATCTGTTTAGGAA 57.976 29.630 13.39 0.00 0.00 3.36
4006 8477 9.076596 GTGAATTGCAATAATCTGTTTAGGAAC 57.923 33.333 13.39 0.00 36.29 3.62
4007 8478 8.250332 TGAATTGCAATAATCTGTTTAGGAACC 58.750 33.333 13.39 0.00 34.80 3.62
4008 8479 7.716799 ATTGCAATAATCTGTTTAGGAACCA 57.283 32.000 11.02 0.00 34.80 3.67
4009 8480 6.509418 TGCAATAATCTGTTTAGGAACCAC 57.491 37.500 0.00 0.00 34.80 4.16
4010 8481 5.417580 TGCAATAATCTGTTTAGGAACCACC 59.582 40.000 0.00 0.00 34.80 4.61
4011 8482 5.417580 GCAATAATCTGTTTAGGAACCACCA 59.582 40.000 0.00 0.00 42.04 4.17
4012 8483 6.096846 GCAATAATCTGTTTAGGAACCACCAT 59.903 38.462 0.00 0.00 42.04 3.55
4013 8484 7.483307 CAATAATCTGTTTAGGAACCACCATG 58.517 38.462 0.00 0.00 42.04 3.66
4014 8485 4.927267 ATCTGTTTAGGAACCACCATGA 57.073 40.909 0.00 0.00 42.04 3.07
4015 8486 4.715534 TCTGTTTAGGAACCACCATGAA 57.284 40.909 0.00 0.00 42.04 2.57
4016 8487 5.255397 TCTGTTTAGGAACCACCATGAAT 57.745 39.130 0.00 0.00 42.04 2.57
4017 8488 5.009631 TCTGTTTAGGAACCACCATGAATG 58.990 41.667 0.00 0.00 42.04 2.67
4018 8489 3.509575 TGTTTAGGAACCACCATGAATGC 59.490 43.478 0.00 0.00 42.04 3.56
4019 8490 3.448093 TTAGGAACCACCATGAATGCA 57.552 42.857 0.00 0.00 42.04 3.96
4020 8491 2.307496 AGGAACCACCATGAATGCAA 57.693 45.000 0.00 0.00 42.04 4.08
4021 8492 2.173519 AGGAACCACCATGAATGCAAG 58.826 47.619 0.00 0.00 42.04 4.01
4022 8493 2.170166 GGAACCACCATGAATGCAAGA 58.830 47.619 0.00 0.00 38.79 3.02
4023 8494 2.762327 GGAACCACCATGAATGCAAGAT 59.238 45.455 0.00 0.00 38.79 2.40
4024 8495 3.196254 GGAACCACCATGAATGCAAGATT 59.804 43.478 0.00 0.00 38.79 2.40
4025 8496 4.322953 GGAACCACCATGAATGCAAGATTT 60.323 41.667 0.00 0.00 38.79 2.17
4026 8497 4.196626 ACCACCATGAATGCAAGATTTG 57.803 40.909 0.00 0.00 0.00 2.32
4027 8498 3.579586 ACCACCATGAATGCAAGATTTGT 59.420 39.130 0.00 0.00 0.00 2.83
4028 8499 3.930229 CCACCATGAATGCAAGATTTGTG 59.070 43.478 0.00 0.00 0.00 3.33
4029 8500 3.369756 CACCATGAATGCAAGATTTGTGC 59.630 43.478 0.00 0.00 42.55 4.57
4030 8501 3.259876 ACCATGAATGCAAGATTTGTGCT 59.740 39.130 0.00 0.00 42.69 4.40
4031 8502 4.463539 ACCATGAATGCAAGATTTGTGCTA 59.536 37.500 0.00 0.00 42.69 3.49
4032 8503 4.802039 CCATGAATGCAAGATTTGTGCTAC 59.198 41.667 0.00 0.00 42.69 3.58
4033 8504 4.439305 TGAATGCAAGATTTGTGCTACC 57.561 40.909 0.00 0.00 42.69 3.18
4034 8505 3.825585 TGAATGCAAGATTTGTGCTACCA 59.174 39.130 0.00 0.00 42.69 3.25
4035 8506 3.855689 ATGCAAGATTTGTGCTACCAC 57.144 42.857 0.00 0.00 42.69 4.16
4036 8507 2.862541 TGCAAGATTTGTGCTACCACT 58.137 42.857 0.00 0.00 42.69 4.00
4037 8508 2.813754 TGCAAGATTTGTGCTACCACTC 59.186 45.455 0.00 0.00 42.69 3.51
4038 8509 2.813754 GCAAGATTTGTGCTACCACTCA 59.186 45.455 0.00 0.00 42.54 3.41
4039 8510 3.120060 GCAAGATTTGTGCTACCACTCAG 60.120 47.826 0.00 0.00 42.54 3.35
4040 8511 4.067896 CAAGATTTGTGCTACCACTCAGT 58.932 43.478 0.00 0.00 42.54 3.41
4041 8512 4.357918 AGATTTGTGCTACCACTCAGTT 57.642 40.909 0.00 0.00 42.54 3.16
4042 8513 4.718961 AGATTTGTGCTACCACTCAGTTT 58.281 39.130 0.00 0.00 42.54 2.66
4043 8514 4.516698 AGATTTGTGCTACCACTCAGTTTG 59.483 41.667 0.00 0.00 42.54 2.93
4044 8515 3.552132 TTGTGCTACCACTCAGTTTGA 57.448 42.857 0.00 0.00 42.54 2.69
4045 8516 3.552132 TGTGCTACCACTCAGTTTGAA 57.448 42.857 0.00 0.00 42.54 2.69
4046 8517 3.466836 TGTGCTACCACTCAGTTTGAAG 58.533 45.455 0.00 0.00 42.54 3.02
4047 8518 2.808543 GTGCTACCACTCAGTTTGAAGG 59.191 50.000 0.00 0.00 38.93 3.46
4048 8519 2.438021 TGCTACCACTCAGTTTGAAGGT 59.562 45.455 7.66 7.66 38.13 3.50
4049 8520 3.118038 TGCTACCACTCAGTTTGAAGGTT 60.118 43.478 7.79 0.00 36.58 3.50
4050 8521 3.883489 GCTACCACTCAGTTTGAAGGTTT 59.117 43.478 7.79 0.00 36.58 3.27
4051 8522 4.023963 GCTACCACTCAGTTTGAAGGTTTC 60.024 45.833 7.79 0.00 36.58 2.78
4052 8523 3.963129 ACCACTCAGTTTGAAGGTTTCA 58.037 40.909 0.00 0.00 32.88 2.69
4053 8524 3.947834 ACCACTCAGTTTGAAGGTTTCAG 59.052 43.478 0.00 0.00 41.38 3.02
4054 8525 4.199310 CCACTCAGTTTGAAGGTTTCAGA 58.801 43.478 0.00 0.00 41.38 3.27
4055 8526 4.823989 CCACTCAGTTTGAAGGTTTCAGAT 59.176 41.667 0.00 0.00 41.38 2.90
4056 8527 5.300286 CCACTCAGTTTGAAGGTTTCAGATT 59.700 40.000 0.00 0.00 41.38 2.40
4057 8528 6.486657 CCACTCAGTTTGAAGGTTTCAGATTA 59.513 38.462 0.00 0.00 41.38 1.75
4058 8529 7.175641 CCACTCAGTTTGAAGGTTTCAGATTAT 59.824 37.037 0.00 0.00 41.38 1.28
4059 8530 8.571336 CACTCAGTTTGAAGGTTTCAGATTATT 58.429 33.333 0.00 0.00 41.38 1.40
4060 8531 8.571336 ACTCAGTTTGAAGGTTTCAGATTATTG 58.429 33.333 0.00 0.00 41.38 1.90
4061 8532 8.463930 TCAGTTTGAAGGTTTCAGATTATTGT 57.536 30.769 0.00 0.00 41.38 2.71
4062 8533 9.567776 TCAGTTTGAAGGTTTCAGATTATTGTA 57.432 29.630 0.00 0.00 41.38 2.41
4071 8542 9.995003 AGGTTTCAGATTATTGTAATTTTTGCA 57.005 25.926 0.00 0.00 0.00 4.08
4084 8555 8.885494 TGTAATTTTTGCATCTAAAAAGTGCT 57.115 26.923 9.92 0.00 41.29 4.40
4085 8556 9.323985 TGTAATTTTTGCATCTAAAAAGTGCTT 57.676 25.926 9.92 0.00 41.29 3.91
4089 8560 8.940768 TTTTTGCATCTAAAAAGTGCTTAACT 57.059 26.923 0.00 0.00 42.60 2.24
4092 8563 9.624697 TTTGCATCTAAAAAGTGCTTAACTATG 57.375 29.630 0.00 0.00 38.56 2.23
4093 8564 8.335532 TGCATCTAAAAAGTGCTTAACTATGT 57.664 30.769 0.00 0.00 38.56 2.29
4094 8565 8.450964 TGCATCTAAAAAGTGCTTAACTATGTC 58.549 33.333 0.00 0.00 38.56 3.06
4095 8566 8.450964 GCATCTAAAAAGTGCTTAACTATGTCA 58.549 33.333 0.00 0.00 38.56 3.58
4099 8570 7.908193 AAAAAGTGCTTAACTATGTCAAACG 57.092 32.000 0.00 0.00 38.56 3.60
4100 8571 6.613755 AAAGTGCTTAACTATGTCAAACGT 57.386 33.333 0.00 0.00 38.56 3.99
4101 8572 5.591643 AGTGCTTAACTATGTCAAACGTG 57.408 39.130 0.00 0.00 37.36 4.49
4102 8573 5.054477 AGTGCTTAACTATGTCAAACGTGT 58.946 37.500 0.00 0.00 37.36 4.49
4103 8574 5.526111 AGTGCTTAACTATGTCAAACGTGTT 59.474 36.000 0.00 0.00 37.36 3.32
4104 8575 6.037830 AGTGCTTAACTATGTCAAACGTGTTT 59.962 34.615 0.00 0.00 37.36 2.83
4105 8576 7.225145 AGTGCTTAACTATGTCAAACGTGTTTA 59.775 33.333 0.00 0.00 37.36 2.01
4106 8577 7.851963 GTGCTTAACTATGTCAAACGTGTTTAA 59.148 33.333 0.00 0.00 0.00 1.52
4107 8578 8.561212 TGCTTAACTATGTCAAACGTGTTTAAT 58.439 29.630 0.00 0.00 0.00 1.40
4108 8579 9.047871 GCTTAACTATGTCAAACGTGTTTAATC 57.952 33.333 0.00 0.00 0.00 1.75
4110 8581 9.866936 TTAACTATGTCAAACGTGTTTAATCAC 57.133 29.630 6.60 6.60 35.28 3.06
4111 8582 7.724305 ACTATGTCAAACGTGTTTAATCACT 57.276 32.000 13.38 0.52 36.33 3.41
4112 8583 7.572759 ACTATGTCAAACGTGTTTAATCACTG 58.427 34.615 13.38 9.80 36.33 3.66
4113 8584 5.804692 TGTCAAACGTGTTTAATCACTGT 57.195 34.783 13.38 10.31 36.33 3.55
4114 8585 6.905544 TGTCAAACGTGTTTAATCACTGTA 57.094 33.333 13.38 0.00 36.33 2.74
4115 8586 7.304919 TGTCAAACGTGTTTAATCACTGTAA 57.695 32.000 13.38 2.97 36.33 2.41
4116 8587 7.749808 TGTCAAACGTGTTTAATCACTGTAAA 58.250 30.769 13.38 2.71 36.33 2.01
4117 8588 8.235226 TGTCAAACGTGTTTAATCACTGTAAAA 58.765 29.630 13.38 2.46 36.33 1.52
4118 8589 9.063739 GTCAAACGTGTTTAATCACTGTAAAAA 57.936 29.630 13.38 1.21 36.33 1.94
4137 8608 2.729028 AAAATACATGGGCGCTACCT 57.271 45.000 7.64 0.00 39.10 3.08
4138 8609 2.256117 AAATACATGGGCGCTACCTC 57.744 50.000 7.64 0.00 39.10 3.85
4139 8610 1.424638 AATACATGGGCGCTACCTCT 58.575 50.000 7.64 0.00 39.10 3.69
4140 8611 1.424638 ATACATGGGCGCTACCTCTT 58.575 50.000 7.64 0.00 39.10 2.85
4141 8612 0.750850 TACATGGGCGCTACCTCTTC 59.249 55.000 7.64 0.00 39.10 2.87
4142 8613 1.592669 CATGGGCGCTACCTCTTCG 60.593 63.158 7.64 0.00 39.10 3.79
4143 8614 1.756950 ATGGGCGCTACCTCTTCGA 60.757 57.895 7.64 0.00 39.10 3.71
4144 8615 1.115930 ATGGGCGCTACCTCTTCGAT 61.116 55.000 7.64 0.00 39.10 3.59
4145 8616 0.466739 TGGGCGCTACCTCTTCGATA 60.467 55.000 7.64 0.00 39.10 2.92
4146 8617 0.889306 GGGCGCTACCTCTTCGATAT 59.111 55.000 7.64 0.00 39.10 1.63
4147 8618 2.089980 GGGCGCTACCTCTTCGATATA 58.910 52.381 7.64 0.00 39.10 0.86
4148 8619 2.490903 GGGCGCTACCTCTTCGATATAA 59.509 50.000 7.64 0.00 39.10 0.98
4149 8620 3.057033 GGGCGCTACCTCTTCGATATAAA 60.057 47.826 7.64 0.00 39.10 1.40
4150 8621 4.167268 GGCGCTACCTCTTCGATATAAAG 58.833 47.826 7.64 0.00 34.51 1.85
4151 8622 4.167268 GCGCTACCTCTTCGATATAAAGG 58.833 47.826 0.00 0.00 0.00 3.11
4152 8623 4.734917 CGCTACCTCTTCGATATAAAGGG 58.265 47.826 0.00 0.00 0.00 3.95
4153 8624 4.496360 GCTACCTCTTCGATATAAAGGGC 58.504 47.826 0.00 0.00 0.00 5.19
4154 8625 4.021368 GCTACCTCTTCGATATAAAGGGCA 60.021 45.833 0.00 0.00 0.00 5.36
4155 8626 5.510861 GCTACCTCTTCGATATAAAGGGCAA 60.511 44.000 0.00 0.00 0.00 4.52
4156 8627 5.568620 ACCTCTTCGATATAAAGGGCAAT 57.431 39.130 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.004044 ACTGCTTCAAGGATCCTGTGG 59.996 52.381 17.02 8.54 0.00 4.17
18 19 1.612726 GCACTGCTTCAAGGATCCTGT 60.613 52.381 17.02 3.65 0.00 4.00
33 34 1.085091 GAGCACCATCTTGAGCACTG 58.915 55.000 0.00 0.00 0.00 3.66
34 35 0.689055 TGAGCACCATCTTGAGCACT 59.311 50.000 0.00 0.00 0.00 4.40
101 103 0.371645 CAATTTCTCCTCGCTCGCAC 59.628 55.000 0.00 0.00 0.00 5.34
108 110 1.032114 GGTGGCCCAATTTCTCCTCG 61.032 60.000 0.00 0.00 0.00 4.63
141 143 2.037381 GGAGGAGGGTAAATAAGGCGAG 59.963 54.545 0.00 0.00 0.00 5.03
143 145 1.766496 TGGAGGAGGGTAAATAAGGCG 59.234 52.381 0.00 0.00 0.00 5.52
171 173 0.173255 ATGGTAGCACGCATTTTGGC 59.827 50.000 0.00 0.00 0.00 4.52
180 182 1.451387 GTGGGGGAATGGTAGCACG 60.451 63.158 0.00 0.00 0.00 5.34
182 184 1.688811 GTGTGGGGGAATGGTAGCA 59.311 57.895 0.00 0.00 0.00 3.49
206 208 1.652012 GATGGAGAGCTCGAGGACG 59.348 63.158 15.58 0.00 41.26 4.79
208 210 1.152652 GGGATGGAGAGCTCGAGGA 60.153 63.158 15.58 0.00 0.00 3.71
245 247 0.673333 TGGTGCCACTTATGTGCTCG 60.673 55.000 3.24 0.00 42.54 5.03
257 259 1.899437 GACCGGAGAAGATGGTGCCA 61.899 60.000 9.46 0.00 35.75 4.92
263 265 2.278857 CGCGGACCGGAGAAGATG 60.279 66.667 17.22 0.00 0.00 2.90
275 277 4.308458 CAGTTGGACCACCGCGGA 62.308 66.667 35.90 4.54 39.42 5.54
277 279 2.738521 CTCAGTTGGACCACCGCG 60.739 66.667 0.00 0.00 39.42 6.46
291 293 4.967442 AGATGAGGAATGAGGATTGTCTCA 59.033 41.667 0.00 0.00 46.32 3.27
303 305 7.821359 TGTTAGTTTCAGAGAAGATGAGGAATG 59.179 37.037 0.00 0.00 0.00 2.67
304 306 7.821846 GTGTTAGTTTCAGAGAAGATGAGGAAT 59.178 37.037 0.00 0.00 0.00 3.01
319 321 1.493772 CGACTGCGGTGTTAGTTTCA 58.506 50.000 0.80 0.00 0.00 2.69
353 355 2.658707 GCGCAGTGGAACGACAGAC 61.659 63.158 0.30 0.00 45.86 3.51
354 356 2.355837 GCGCAGTGGAACGACAGA 60.356 61.111 0.30 0.00 45.86 3.41
355 357 2.356313 AGCGCAGTGGAACGACAG 60.356 61.111 11.47 0.00 45.86 3.51
356 358 2.355837 GAGCGCAGTGGAACGACA 60.356 61.111 11.47 0.00 45.86 4.35
618 620 1.403687 GGGAGCTCAAGGATAGCCGT 61.404 60.000 17.19 0.00 41.02 5.68
624 626 1.078143 GCAACGGGAGCTCAAGGAT 60.078 57.895 17.19 0.00 0.00 3.24
628 630 1.301716 GACTGCAACGGGAGCTCAA 60.302 57.895 17.19 0.00 35.59 3.02
649 671 1.750193 ATCAACGTTGATGGCGGAAT 58.250 45.000 36.26 15.86 45.63 3.01
661 683 0.243907 CTCGACAGGGACATCAACGT 59.756 55.000 0.00 0.00 0.00 3.99
662 684 1.078759 GCTCGACAGGGACATCAACG 61.079 60.000 0.00 0.00 0.00 4.10
665 687 1.323271 GGAGCTCGACAGGGACATCA 61.323 60.000 7.83 0.00 0.00 3.07
674 696 1.025113 CAGTACGGAGGAGCTCGACA 61.025 60.000 7.83 0.00 0.00 4.35
676 698 0.743701 GACAGTACGGAGGAGCTCGA 60.744 60.000 7.83 0.00 0.00 4.04
715 737 1.156736 ACATGACAACTAACAGCGGC 58.843 50.000 0.00 0.00 0.00 6.53
717 739 4.466567 TGAAACATGACAACTAACAGCG 57.533 40.909 0.00 0.00 0.00 5.18
720 742 5.592282 ACCACATGAAACATGACAACTAACA 59.408 36.000 16.86 0.00 0.00 2.41
724 746 4.889409 AGAACCACATGAAACATGACAACT 59.111 37.500 16.86 7.63 0.00 3.16
726 748 4.886489 TGAGAACCACATGAAACATGACAA 59.114 37.500 16.86 0.00 0.00 3.18
779 802 1.360192 GTGCTTGGACACTGGCAAC 59.640 57.895 0.00 0.00 37.58 4.17
782 805 0.675633 AAATGTGCTTGGACACTGGC 59.324 50.000 0.00 0.00 41.30 4.85
784 807 3.567164 AGAGAAAATGTGCTTGGACACTG 59.433 43.478 0.00 0.00 41.30 3.66
785 808 3.817647 GAGAGAAAATGTGCTTGGACACT 59.182 43.478 0.00 0.00 41.30 3.55
794 817 1.541588 GGGTGTGGAGAGAAAATGTGC 59.458 52.381 0.00 0.00 0.00 4.57
805 828 0.468029 AGCTGGTTTTGGGTGTGGAG 60.468 55.000 0.00 0.00 0.00 3.86
814 837 6.313658 GCCCTATAATTTGAAAGCTGGTTTTG 59.686 38.462 6.27 0.00 0.00 2.44
823 846 6.603201 TCCAAGACAGCCCTATAATTTGAAAG 59.397 38.462 0.00 0.00 0.00 2.62
824 847 6.489603 TCCAAGACAGCCCTATAATTTGAAA 58.510 36.000 0.00 0.00 0.00 2.69
843 875 2.800250 AGGGTTCAAAGCATCTCCAAG 58.200 47.619 0.00 0.00 0.00 3.61
844 876 2.978156 AGGGTTCAAAGCATCTCCAA 57.022 45.000 0.00 0.00 0.00 3.53
845 877 4.079253 GTTTAGGGTTCAAAGCATCTCCA 58.921 43.478 0.00 0.00 0.00 3.86
846 878 3.444034 GGTTTAGGGTTCAAAGCATCTCC 59.556 47.826 0.00 0.00 34.37 3.71
847 879 3.444034 GGGTTTAGGGTTCAAAGCATCTC 59.556 47.826 0.00 0.00 35.57 2.75
848 880 3.076032 AGGGTTTAGGGTTCAAAGCATCT 59.924 43.478 0.00 0.00 35.57 2.90
849 881 3.431415 AGGGTTTAGGGTTCAAAGCATC 58.569 45.455 0.00 0.00 35.57 3.91
850 882 3.542969 AGGGTTTAGGGTTCAAAGCAT 57.457 42.857 0.00 0.00 35.57 3.79
851 883 3.245122 CCTAGGGTTTAGGGTTCAAAGCA 60.245 47.826 0.00 0.00 35.57 3.91
852 884 3.009805 TCCTAGGGTTTAGGGTTCAAAGC 59.990 47.826 9.46 0.00 35.45 3.51
853 885 4.921644 TCCTAGGGTTTAGGGTTCAAAG 57.078 45.455 9.46 0.00 35.45 2.77
854 886 5.666474 TTTCCTAGGGTTTAGGGTTCAAA 57.334 39.130 9.46 0.00 35.45 2.69
860 892 5.251182 TGAACTTTTCCTAGGGTTTAGGG 57.749 43.478 9.46 0.00 35.45 3.53
861 893 5.254115 CCTGAACTTTTCCTAGGGTTTAGG 58.746 45.833 18.64 18.64 38.45 2.69
891 923 7.930217 TGTTTGTTTCTCGAGAGAATTTCAAT 58.070 30.769 15.94 0.00 45.78 2.57
963 1006 1.221466 GCTTTCTTTTTGGGCGTGGC 61.221 55.000 0.00 0.00 0.00 5.01
965 1019 0.599991 GGGCTTTCTTTTTGGGCGTG 60.600 55.000 0.00 0.00 0.00 5.34
973 1027 1.342074 GAGGGCTTGGGCTTTCTTTT 58.658 50.000 0.00 0.00 38.73 2.27
2075 2161 5.216566 TGTCAAATTTACATAGCTCGTGC 57.783 39.130 0.07 0.07 40.05 5.34
2182 2287 2.683211 AGCCAGGATTTTCACACCTT 57.317 45.000 0.00 0.00 31.06 3.50
2448 2595 0.179018 ACCTGACTTGTGCCAGAACC 60.179 55.000 0.00 0.00 32.37 3.62
2464 2611 3.901844 ACCGTATGCATTCTATGGTACCT 59.098 43.478 14.36 1.08 36.84 3.08
2625 2772 2.668550 GGGACACCACCTTGCGAC 60.669 66.667 0.00 0.00 36.50 5.19
2731 5115 1.825474 TCACCGAGGGAGAAATCAGAC 59.175 52.381 0.00 0.00 0.00 3.51
2772 5156 1.153588 GGCGATTGCAACCCAATGG 60.154 57.895 0.00 0.00 44.02 3.16
2872 5256 3.746492 ACTGAAAACACATCTCTAACGGC 59.254 43.478 0.00 0.00 0.00 5.68
2873 5257 4.750098 ACACTGAAAACACATCTCTAACGG 59.250 41.667 0.00 0.00 0.00 4.44
2874 5258 5.462068 TGACACTGAAAACACATCTCTAACG 59.538 40.000 0.00 0.00 0.00 3.18
2875 5259 6.564873 GCTGACACTGAAAACACATCTCTAAC 60.565 42.308 0.00 0.00 0.00 2.34
2876 5260 5.466728 GCTGACACTGAAAACACATCTCTAA 59.533 40.000 0.00 0.00 0.00 2.10
2877 5261 4.991056 GCTGACACTGAAAACACATCTCTA 59.009 41.667 0.00 0.00 0.00 2.43
2878 5262 3.812053 GCTGACACTGAAAACACATCTCT 59.188 43.478 0.00 0.00 0.00 3.10
2879 5263 3.058639 GGCTGACACTGAAAACACATCTC 60.059 47.826 0.00 0.00 0.00 2.75
2880 5264 2.880890 GGCTGACACTGAAAACACATCT 59.119 45.455 0.00 0.00 0.00 2.90
2881 5265 2.349817 CGGCTGACACTGAAAACACATC 60.350 50.000 0.00 0.00 0.00 3.06
2882 5266 1.603802 CGGCTGACACTGAAAACACAT 59.396 47.619 0.00 0.00 0.00 3.21
2883 5267 1.013596 CGGCTGACACTGAAAACACA 58.986 50.000 0.00 0.00 0.00 3.72
2884 5268 1.014352 ACGGCTGACACTGAAAACAC 58.986 50.000 0.00 0.00 0.00 3.32
2885 5269 1.745232 AACGGCTGACACTGAAAACA 58.255 45.000 0.00 0.00 0.00 2.83
2886 5270 3.128349 TCTAACGGCTGACACTGAAAAC 58.872 45.455 0.00 0.00 0.00 2.43
2887 5271 3.069016 TCTCTAACGGCTGACACTGAAAA 59.931 43.478 0.00 0.00 0.00 2.29
2888 5272 2.626266 TCTCTAACGGCTGACACTGAAA 59.374 45.455 0.00 0.00 0.00 2.69
2889 5273 2.235891 TCTCTAACGGCTGACACTGAA 58.764 47.619 0.00 0.00 0.00 3.02
2890 5274 1.905637 TCTCTAACGGCTGACACTGA 58.094 50.000 0.00 0.00 0.00 3.41
2891 5275 2.094494 ACATCTCTAACGGCTGACACTG 60.094 50.000 0.00 0.00 0.00 3.66
2892 5276 2.094494 CACATCTCTAACGGCTGACACT 60.094 50.000 0.00 0.00 0.00 3.55
2893 5277 2.263077 CACATCTCTAACGGCTGACAC 58.737 52.381 0.00 0.00 0.00 3.67
2894 5278 1.893137 ACACATCTCTAACGGCTGACA 59.107 47.619 0.00 0.00 0.00 3.58
2895 5279 2.656560 ACACATCTCTAACGGCTGAC 57.343 50.000 0.00 0.00 0.00 3.51
2896 5280 3.678056 AAACACATCTCTAACGGCTGA 57.322 42.857 0.00 0.00 0.00 4.26
2897 5281 3.745975 TGAAAACACATCTCTAACGGCTG 59.254 43.478 0.00 0.00 0.00 4.85
2898 5282 3.997021 CTGAAAACACATCTCTAACGGCT 59.003 43.478 0.00 0.00 0.00 5.52
2899 5283 3.746492 ACTGAAAACACATCTCTAACGGC 59.254 43.478 0.00 0.00 0.00 5.68
2923 5307 1.078143 GGCAGGGCGAATCTTCAGT 60.078 57.895 0.00 0.00 0.00 3.41
2938 5322 1.876416 GCTAAACACGGACAAGAGGCA 60.876 52.381 0.00 0.00 0.00 4.75
3021 5406 0.865111 CAGAACAATGGTCGCGACAA 59.135 50.000 37.26 29.97 0.00 3.18
3025 5410 0.453282 CAAGCAGAACAATGGTCGCG 60.453 55.000 0.00 0.00 0.00 5.87
3028 5413 1.068055 CCAGCAAGCAGAACAATGGTC 60.068 52.381 0.00 0.00 0.00 4.02
3112 5505 0.239879 CCGTGCAATGTAACACCACC 59.760 55.000 0.00 0.00 33.09 4.61
3195 5912 2.715749 TGAGGTGATGCCATAACAGG 57.284 50.000 0.00 0.00 40.61 4.00
3204 5921 3.139850 CTGATCAAGGATGAGGTGATGC 58.860 50.000 0.00 0.00 39.39 3.91
3268 5985 0.237235 TGAAATGAAGTTGACGCCGC 59.763 50.000 0.00 0.00 0.00 6.53
3270 5987 1.537202 AGCTGAAATGAAGTTGACGCC 59.463 47.619 0.00 0.00 0.00 5.68
3352 6076 4.380867 CCTGCTTTTAGATGCGTCCAATTT 60.381 41.667 1.23 0.00 0.00 1.82
3361 6085 4.697352 TCTTCAGAACCTGCTTTTAGATGC 59.303 41.667 0.00 0.00 0.00 3.91
3394 6118 1.329906 CAGAATTGCGCTCATCAGGTC 59.670 52.381 9.73 0.00 0.00 3.85
3444 6168 6.519382 TCACAGCTTATCCATTCTGTCTATG 58.481 40.000 0.00 0.00 37.66 2.23
3480 6204 3.073798 TCAGCCACCCTCAACAATTTCTA 59.926 43.478 0.00 0.00 0.00 2.10
3513 7984 4.821589 CGGCGCTGAAGGGACCTC 62.822 72.222 11.90 0.00 31.42 3.85
3515 7986 4.821589 CTCGGCGCTGAAGGGACC 62.822 72.222 21.34 0.00 31.42 4.46
3516 7987 2.962697 GATCTCGGCGCTGAAGGGAC 62.963 65.000 21.34 6.60 0.00 4.46
3517 7988 2.759973 ATCTCGGCGCTGAAGGGA 60.760 61.111 21.34 14.59 0.00 4.20
3518 7989 2.279784 GATCTCGGCGCTGAAGGG 60.280 66.667 21.34 9.09 0.00 3.95
3519 7990 2.279784 GGATCTCGGCGCTGAAGG 60.280 66.667 21.34 9.88 0.00 3.46
3520 7991 2.279784 GGGATCTCGGCGCTGAAG 60.280 66.667 21.34 14.13 0.00 3.02
3521 7992 2.759973 AGGGATCTCGGCGCTGAA 60.760 61.111 21.34 11.68 0.00 3.02
3522 7993 3.531207 CAGGGATCTCGGCGCTGA 61.531 66.667 19.73 19.73 45.83 4.26
3526 7997 4.598894 CCAGCAGGGATCTCGGCG 62.599 72.222 12.25 0.00 40.01 6.46
3527 7998 4.925861 GCCAGCAGGGATCTCGGC 62.926 72.222 10.01 10.01 40.01 5.54
3528 7999 4.247380 GGCCAGCAGGGATCTCGG 62.247 72.222 0.00 0.00 40.01 4.63
3529 8000 4.598894 CGGCCAGCAGGGATCTCG 62.599 72.222 2.24 0.00 40.01 4.04
3548 8019 4.749310 CTGACGCTCGCCAAGGCT 62.749 66.667 9.73 0.00 39.32 4.58
3550 8021 2.501223 TAACCTGACGCTCGCCAAGG 62.501 60.000 4.59 4.59 0.00 3.61
3551 8022 0.460284 ATAACCTGACGCTCGCCAAG 60.460 55.000 0.00 0.00 0.00 3.61
3552 8023 0.459585 GATAACCTGACGCTCGCCAA 60.460 55.000 0.00 0.00 0.00 4.52
3553 8024 1.141019 GATAACCTGACGCTCGCCA 59.859 57.895 0.00 0.00 0.00 5.69
3554 8025 0.872021 CTGATAACCTGACGCTCGCC 60.872 60.000 0.00 0.00 0.00 5.54
3555 8026 0.179134 ACTGATAACCTGACGCTCGC 60.179 55.000 0.00 0.00 0.00 5.03
3556 8027 1.132453 TCACTGATAACCTGACGCTCG 59.868 52.381 0.00 0.00 0.00 5.03
3557 8028 2.480416 CCTCACTGATAACCTGACGCTC 60.480 54.545 0.00 0.00 0.00 5.03
3558 8029 1.478510 CCTCACTGATAACCTGACGCT 59.521 52.381 0.00 0.00 0.00 5.07
3559 8030 1.476891 TCCTCACTGATAACCTGACGC 59.523 52.381 0.00 0.00 0.00 5.19
3560 8031 3.868757 TTCCTCACTGATAACCTGACG 57.131 47.619 0.00 0.00 0.00 4.35
3561 8032 4.872691 CACATTCCTCACTGATAACCTGAC 59.127 45.833 0.00 0.00 0.00 3.51
3562 8033 4.777366 TCACATTCCTCACTGATAACCTGA 59.223 41.667 0.00 0.00 0.00 3.86
3563 8034 4.872691 GTCACATTCCTCACTGATAACCTG 59.127 45.833 0.00 0.00 0.00 4.00
3564 8035 4.080863 GGTCACATTCCTCACTGATAACCT 60.081 45.833 0.00 0.00 0.00 3.50
3565 8036 4.080863 AGGTCACATTCCTCACTGATAACC 60.081 45.833 0.00 0.00 0.00 2.85
3566 8037 4.872691 CAGGTCACATTCCTCACTGATAAC 59.127 45.833 0.00 0.00 32.37 1.89
3567 8038 4.623886 GCAGGTCACATTCCTCACTGATAA 60.624 45.833 0.00 0.00 32.37 1.75
3568 8039 3.118629 GCAGGTCACATTCCTCACTGATA 60.119 47.826 0.00 0.00 32.37 2.15
3569 8040 2.355513 GCAGGTCACATTCCTCACTGAT 60.356 50.000 0.00 0.00 32.37 2.90
3570 8041 1.002430 GCAGGTCACATTCCTCACTGA 59.998 52.381 0.00 0.00 32.37 3.41
3571 8042 1.446907 GCAGGTCACATTCCTCACTG 58.553 55.000 0.00 0.00 32.37 3.66
3572 8043 0.326264 GGCAGGTCACATTCCTCACT 59.674 55.000 0.00 0.00 32.37 3.41
3573 8044 0.326264 AGGCAGGTCACATTCCTCAC 59.674 55.000 0.00 0.00 32.37 3.51
3634 8105 1.622173 CCTCTCCTCTTCTTCTGCCCT 60.622 57.143 0.00 0.00 0.00 5.19
3638 8109 5.076873 CCCTATACCTCTCCTCTTCTTCTG 58.923 50.000 0.00 0.00 0.00 3.02
3657 8128 3.988871 TGAAACCCTAAACCTTTCCCCTA 59.011 43.478 0.00 0.00 0.00 3.53
3685 8156 4.279145 TGAGATAAGGGGTGAGAGTACAC 58.721 47.826 0.00 0.00 39.70 2.90
3686 8157 4.537751 CTGAGATAAGGGGTGAGAGTACA 58.462 47.826 0.00 0.00 0.00 2.90
3687 8158 3.319689 GCTGAGATAAGGGGTGAGAGTAC 59.680 52.174 0.00 0.00 0.00 2.73
3688 8159 3.205507 AGCTGAGATAAGGGGTGAGAGTA 59.794 47.826 0.00 0.00 0.00 2.59
3689 8160 2.023501 AGCTGAGATAAGGGGTGAGAGT 60.024 50.000 0.00 0.00 0.00 3.24
3690 8161 2.364970 CAGCTGAGATAAGGGGTGAGAG 59.635 54.545 8.42 0.00 0.00 3.20
3691 8162 2.292521 ACAGCTGAGATAAGGGGTGAGA 60.293 50.000 23.35 0.00 0.00 3.27
3692 8163 2.102252 GACAGCTGAGATAAGGGGTGAG 59.898 54.545 23.35 0.00 0.00 3.51
3693 8164 2.111384 GACAGCTGAGATAAGGGGTGA 58.889 52.381 23.35 0.00 0.00 4.02
3710 8181 2.027745 GTCAATCTCAAGGAGCTGGACA 60.028 50.000 0.00 0.00 0.00 4.02
3753 8224 7.706179 CAGCATGAAAGAAACCAAAGAAACTAA 59.294 33.333 0.00 0.00 39.69 2.24
3814 8285 7.716998 GCTTCTGGTGATTATTCATTTCTCCTA 59.283 37.037 0.00 0.00 33.56 2.94
3834 8305 5.094134 GCTAAATGCTTGAAAGAGCTTCTG 58.906 41.667 0.00 0.00 43.11 3.02
3865 8336 9.708092 GTCAGACTAAGTTTTTGGAGTACTAAT 57.292 33.333 0.00 0.00 0.00 1.73
3872 8343 4.214332 GCCAGTCAGACTAAGTTTTTGGAG 59.786 45.833 1.67 0.00 0.00 3.86
3910 8381 7.255555 CCAGCATGCCATTTTGATTATGTAGTA 60.256 37.037 15.66 0.00 31.97 1.82
3931 8402 1.028905 GTTTGGTACAGTTGCCAGCA 58.971 50.000 0.00 0.00 42.39 4.41
3971 8442 7.487189 CAGATTATTGCAATTCACTTCCAACTC 59.513 37.037 18.75 0.00 0.00 3.01
3973 8444 7.092716 ACAGATTATTGCAATTCACTTCCAAC 58.907 34.615 18.75 0.00 0.00 3.77
3974 8445 7.230849 ACAGATTATTGCAATTCACTTCCAA 57.769 32.000 18.75 3.23 0.00 3.53
3985 8456 6.071616 GGTGGTTCCTAAACAGATTATTGCAA 60.072 38.462 0.00 0.00 37.10 4.08
3995 8466 4.380867 GCATTCATGGTGGTTCCTAAACAG 60.381 45.833 0.00 0.00 37.10 3.16
4000 8471 3.010027 TCTTGCATTCATGGTGGTTCCTA 59.990 43.478 0.00 0.00 37.07 2.94
4001 8472 2.173519 CTTGCATTCATGGTGGTTCCT 58.826 47.619 0.00 0.00 37.07 3.36
4002 8473 2.170166 TCTTGCATTCATGGTGGTTCC 58.830 47.619 0.00 0.00 0.00 3.62
4003 8474 4.460948 AATCTTGCATTCATGGTGGTTC 57.539 40.909 0.00 0.00 0.00 3.62
4004 8475 4.040706 ACAAATCTTGCATTCATGGTGGTT 59.959 37.500 0.00 0.00 0.00 3.67
4005 8476 3.579586 ACAAATCTTGCATTCATGGTGGT 59.420 39.130 0.00 0.00 0.00 4.16
4006 8477 3.930229 CACAAATCTTGCATTCATGGTGG 59.070 43.478 0.00 0.00 0.00 4.61
4007 8478 3.369756 GCACAAATCTTGCATTCATGGTG 59.630 43.478 0.00 0.00 39.93 4.17
4008 8479 3.259876 AGCACAAATCTTGCATTCATGGT 59.740 39.130 0.00 0.00 42.83 3.55
4009 8480 3.857052 AGCACAAATCTTGCATTCATGG 58.143 40.909 0.00 0.00 42.83 3.66
4010 8481 4.802039 GGTAGCACAAATCTTGCATTCATG 59.198 41.667 0.00 0.00 42.83 3.07
4011 8482 4.463539 TGGTAGCACAAATCTTGCATTCAT 59.536 37.500 0.00 0.00 42.83 2.57
4012 8483 3.825585 TGGTAGCACAAATCTTGCATTCA 59.174 39.130 0.00 0.00 42.83 2.57
4013 8484 4.082571 AGTGGTAGCACAAATCTTGCATTC 60.083 41.667 25.75 0.00 42.83 2.67
4014 8485 3.828451 AGTGGTAGCACAAATCTTGCATT 59.172 39.130 25.75 0.00 42.83 3.56
4015 8486 3.424703 AGTGGTAGCACAAATCTTGCAT 58.575 40.909 25.75 0.00 42.83 3.96
4016 8487 2.813754 GAGTGGTAGCACAAATCTTGCA 59.186 45.455 25.75 0.00 42.83 4.08
4017 8488 2.813754 TGAGTGGTAGCACAAATCTTGC 59.186 45.455 25.75 6.15 40.52 4.01
4018 8489 4.067896 ACTGAGTGGTAGCACAAATCTTG 58.932 43.478 25.75 13.68 0.00 3.02
4019 8490 4.357918 ACTGAGTGGTAGCACAAATCTT 57.642 40.909 25.75 4.88 0.00 2.40
4020 8491 4.357918 AACTGAGTGGTAGCACAAATCT 57.642 40.909 25.75 5.64 0.00 2.40
4021 8492 4.515191 TCAAACTGAGTGGTAGCACAAATC 59.485 41.667 25.75 15.37 0.00 2.17
4022 8493 4.460263 TCAAACTGAGTGGTAGCACAAAT 58.540 39.130 25.75 6.41 0.00 2.32
4023 8494 3.879998 TCAAACTGAGTGGTAGCACAAA 58.120 40.909 25.75 12.79 0.00 2.83
4024 8495 3.552132 TCAAACTGAGTGGTAGCACAA 57.448 42.857 25.75 13.13 0.00 3.33
4025 8496 3.466836 CTTCAAACTGAGTGGTAGCACA 58.533 45.455 25.75 6.45 0.00 4.57
4026 8497 2.808543 CCTTCAAACTGAGTGGTAGCAC 59.191 50.000 17.29 17.29 0.00 4.40
4027 8498 2.438021 ACCTTCAAACTGAGTGGTAGCA 59.562 45.455 0.00 0.00 34.76 3.49
4028 8499 3.127425 ACCTTCAAACTGAGTGGTAGC 57.873 47.619 0.00 0.00 34.76 3.58
4029 8500 5.123227 TGAAACCTTCAAACTGAGTGGTAG 58.877 41.667 0.00 0.00 35.21 3.18
4030 8501 5.104693 TCTGAAACCTTCAAACTGAGTGGTA 60.105 40.000 0.00 0.00 39.58 3.25
4031 8502 3.947834 CTGAAACCTTCAAACTGAGTGGT 59.052 43.478 0.00 0.00 39.58 4.16
4032 8503 4.199310 TCTGAAACCTTCAAACTGAGTGG 58.801 43.478 0.00 0.00 39.58 4.00
4033 8504 6.382869 AATCTGAAACCTTCAAACTGAGTG 57.617 37.500 0.00 0.00 39.58 3.51
4034 8505 8.571336 CAATAATCTGAAACCTTCAAACTGAGT 58.429 33.333 0.00 0.00 39.58 3.41
4035 8506 8.571336 ACAATAATCTGAAACCTTCAAACTGAG 58.429 33.333 0.00 0.00 39.58 3.35
4036 8507 8.463930 ACAATAATCTGAAACCTTCAAACTGA 57.536 30.769 0.00 0.00 39.58 3.41
4045 8516 9.995003 TGCAAAAATTACAATAATCTGAAACCT 57.005 25.926 0.00 0.00 0.00 3.50
4058 8529 9.323985 AGCACTTTTTAGATGCAAAAATTACAA 57.676 25.926 0.00 0.00 41.97 2.41
4059 8530 8.885494 AGCACTTTTTAGATGCAAAAATTACA 57.115 26.923 0.00 0.00 41.97 2.41
4063 8534 9.546428 AGTTAAGCACTTTTTAGATGCAAAAAT 57.454 25.926 0.00 0.00 41.97 1.82
4064 8535 8.940768 AGTTAAGCACTTTTTAGATGCAAAAA 57.059 26.923 0.00 0.00 41.97 1.94
4066 8537 9.624697 CATAGTTAAGCACTTTTTAGATGCAAA 57.375 29.630 0.00 0.00 41.97 3.68
4067 8538 8.792633 ACATAGTTAAGCACTTTTTAGATGCAA 58.207 29.630 0.00 0.00 41.97 4.08
4068 8539 8.335532 ACATAGTTAAGCACTTTTTAGATGCA 57.664 30.769 0.00 0.00 41.97 3.96
4069 8540 8.450964 TGACATAGTTAAGCACTTTTTAGATGC 58.549 33.333 0.00 0.00 36.88 3.91
4073 8544 9.103048 CGTTTGACATAGTTAAGCACTTTTTAG 57.897 33.333 0.00 0.00 36.88 1.85
4074 8545 8.614346 ACGTTTGACATAGTTAAGCACTTTTTA 58.386 29.630 0.00 0.00 36.88 1.52
4075 8546 7.431084 CACGTTTGACATAGTTAAGCACTTTTT 59.569 33.333 0.00 0.00 36.88 1.94
4076 8547 6.910433 CACGTTTGACATAGTTAAGCACTTTT 59.090 34.615 0.00 0.00 36.88 2.27
4077 8548 6.037830 ACACGTTTGACATAGTTAAGCACTTT 59.962 34.615 0.00 0.00 36.88 2.66
4078 8549 5.526111 ACACGTTTGACATAGTTAAGCACTT 59.474 36.000 0.00 0.00 36.88 3.16
4079 8550 5.054477 ACACGTTTGACATAGTTAAGCACT 58.946 37.500 0.00 0.00 39.87 4.40
4080 8551 5.338614 ACACGTTTGACATAGTTAAGCAC 57.661 39.130 0.00 0.00 0.00 4.40
4081 8552 5.994887 AACACGTTTGACATAGTTAAGCA 57.005 34.783 0.00 0.00 0.00 3.91
4082 8553 8.944212 ATTAAACACGTTTGACATAGTTAAGC 57.056 30.769 5.42 0.00 34.23 3.09
4084 8555 9.866936 GTGATTAAACACGTTTGACATAGTTAA 57.133 29.630 5.42 0.00 34.23 2.01
4085 8556 9.263538 AGTGATTAAACACGTTTGACATAGTTA 57.736 29.630 9.88 0.00 44.35 2.24
4086 8557 8.067784 CAGTGATTAAACACGTTTGACATAGTT 58.932 33.333 9.88 0.00 44.35 2.24
4087 8558 7.225931 ACAGTGATTAAACACGTTTGACATAGT 59.774 33.333 9.88 3.91 44.35 2.12
4088 8559 7.572759 ACAGTGATTAAACACGTTTGACATAG 58.427 34.615 9.88 3.44 44.35 2.23
4089 8560 7.485418 ACAGTGATTAAACACGTTTGACATA 57.515 32.000 9.88 0.00 44.35 2.29
4090 8561 6.371809 ACAGTGATTAAACACGTTTGACAT 57.628 33.333 9.88 0.00 44.35 3.06
4091 8562 5.804692 ACAGTGATTAAACACGTTTGACA 57.195 34.783 9.88 0.94 44.35 3.58
4092 8563 8.603983 TTTTACAGTGATTAAACACGTTTGAC 57.396 30.769 14.67 0.00 44.35 3.18
4117 8588 2.949644 GAGGTAGCGCCCATGTATTTTT 59.050 45.455 2.29 0.00 38.26 1.94
4118 8589 2.172717 AGAGGTAGCGCCCATGTATTTT 59.827 45.455 2.29 0.00 38.26 1.82
4119 8590 1.768870 AGAGGTAGCGCCCATGTATTT 59.231 47.619 2.29 0.00 38.26 1.40
4120 8591 1.424638 AGAGGTAGCGCCCATGTATT 58.575 50.000 2.29 0.00 38.26 1.89
4121 8592 1.344763 GAAGAGGTAGCGCCCATGTAT 59.655 52.381 2.29 0.00 38.26 2.29
4122 8593 0.750850 GAAGAGGTAGCGCCCATGTA 59.249 55.000 2.29 0.00 38.26 2.29
4123 8594 1.522569 GAAGAGGTAGCGCCCATGT 59.477 57.895 2.29 0.00 38.26 3.21
4124 8595 1.592669 CGAAGAGGTAGCGCCCATG 60.593 63.158 2.29 0.00 38.26 3.66
4125 8596 1.115930 ATCGAAGAGGTAGCGCCCAT 61.116 55.000 2.29 0.00 43.63 4.00
4126 8597 0.466739 TATCGAAGAGGTAGCGCCCA 60.467 55.000 2.29 0.00 43.63 5.36
4127 8598 0.889306 ATATCGAAGAGGTAGCGCCC 59.111 55.000 2.29 0.00 43.63 6.13
4128 8599 3.844577 TTATATCGAAGAGGTAGCGCC 57.155 47.619 2.29 0.00 43.63 6.53
4129 8600 4.167268 CCTTTATATCGAAGAGGTAGCGC 58.833 47.826 0.00 0.00 43.63 5.92
4130 8601 4.734917 CCCTTTATATCGAAGAGGTAGCG 58.265 47.826 0.00 0.00 43.63 4.26
4131 8602 4.021368 TGCCCTTTATATCGAAGAGGTAGC 60.021 45.833 0.00 0.00 43.63 3.58
4132 8603 5.723672 TGCCCTTTATATCGAAGAGGTAG 57.276 43.478 0.00 0.00 43.63 3.18
4133 8604 6.681729 ATTGCCCTTTATATCGAAGAGGTA 57.318 37.500 0.00 0.00 43.63 3.08
4134 8605 5.568620 ATTGCCCTTTATATCGAAGAGGT 57.431 39.130 0.00 0.00 43.63 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.