Multiple sequence alignment - TraesCS3D01G420400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G420400 chr3D 100.000 5760 0 0 1 5760 532773023 532778782 0.000000e+00 10637.0
1 TraesCS3D01G420400 chr3D 78.420 519 95 12 3967 4478 533674581 533675089 7.200000e-84 322.0
2 TraesCS3D01G420400 chr3D 77.820 523 89 21 3967 4478 533670007 533670513 1.210000e-76 298.0
3 TraesCS3D01G420400 chr3D 87.864 206 24 1 4274 4478 533677836 533678041 2.070000e-59 241.0
4 TraesCS3D01G420400 chr3A 94.007 4288 164 27 776 5012 667947545 667951790 0.000000e+00 6408.0
5 TraesCS3D01G420400 chr3A 90.256 585 52 4 2 583 667946594 667947176 0.000000e+00 760.0
6 TraesCS3D01G420400 chr3A 78.161 522 89 19 3967 4478 669525470 669525976 5.610000e-80 309.0
7 TraesCS3D01G420400 chr3A 76.298 578 110 21 3967 4533 669564383 669564944 3.400000e-72 283.0
8 TraesCS3D01G420400 chr3B 93.703 2255 100 24 857 3078 705002253 705004498 0.000000e+00 3339.0
9 TraesCS3D01G420400 chr3B 93.120 1846 65 16 3126 4913 705004496 705006337 0.000000e+00 2649.0
10 TraesCS3D01G420400 chr3B 88.931 524 54 3 47 567 705001328 705001850 1.350000e-180 643.0
11 TraesCS3D01G420400 chr3B 86.577 447 22 22 4930 5349 705006322 705006757 5.260000e-125 459.0
12 TraesCS3D01G420400 chr3B 78.119 521 91 16 3967 4478 705547755 705548261 5.610000e-80 309.0
13 TraesCS3D01G420400 chr3B 77.308 520 99 14 3967 4478 705564613 705565121 7.300000e-74 289.0
14 TraesCS3D01G420400 chr3B 79.130 115 17 4 590 699 77696784 77696672 8.010000e-09 73.1
15 TraesCS3D01G420400 chr1D 90.777 206 18 1 5506 5710 161770511 161770306 2.040000e-69 274.0
16 TraesCS3D01G420400 chr1D 84.252 127 13 3 590 716 251397079 251396960 3.650000e-22 117.0
17 TraesCS3D01G420400 chr5A 87.805 205 25 0 5506 5710 485531460 485531256 2.070000e-59 241.0
18 TraesCS3D01G420400 chr5A 90.196 51 5 0 671 721 6793213 6793263 3.720000e-07 67.6
19 TraesCS3D01G420400 chr4A 89.286 168 18 0 5506 5673 637067896 637067729 1.630000e-50 211.0
20 TraesCS3D01G420400 chr2A 88.690 168 19 0 5506 5673 42596922 42596755 7.570000e-49 206.0
21 TraesCS3D01G420400 chr7A 88.690 168 18 1 5506 5673 666556852 666557018 2.720000e-48 204.0
22 TraesCS3D01G420400 chr7A 84.553 123 15 3 590 712 92881398 92881516 1.010000e-22 119.0
23 TraesCS3D01G420400 chr7A 84.553 123 15 3 590 712 92883100 92883218 1.010000e-22 119.0
24 TraesCS3D01G420400 chr7A 84.553 123 15 3 590 712 92884981 92885099 1.010000e-22 119.0
25 TraesCS3D01G420400 chr7A 82.524 103 15 2 598 700 6788854 6788755 2.860000e-13 87.9
26 TraesCS3D01G420400 chr7B 84.762 105 14 2 590 694 503281163 503281061 2.840000e-18 104.0
27 TraesCS3D01G420400 chr7B 90.000 50 5 0 5346 5395 666146427 666146378 1.340000e-06 65.8
28 TraesCS3D01G420400 chr2B 82.727 110 15 2 597 702 695000789 695000680 1.710000e-15 95.3
29 TraesCS3D01G420400 chr2B 91.176 68 5 1 590 657 782125890 782125824 2.210000e-14 91.6
30 TraesCS3D01G420400 chr6D 89.394 66 6 1 590 655 399021042 399020978 1.330000e-11 82.4
31 TraesCS3D01G420400 chr7D 92.683 41 3 0 5346 5386 462278573 462278533 6.230000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G420400 chr3D 532773023 532778782 5759 False 10637.0 10637 100.00000 1 5760 1 chr3D.!!$F1 5759
1 TraesCS3D01G420400 chr3D 533670007 533670513 506 False 298.0 298 77.82000 3967 4478 1 chr3D.!!$F2 511
2 TraesCS3D01G420400 chr3D 533674581 533678041 3460 False 281.5 322 83.14200 3967 4478 2 chr3D.!!$F3 511
3 TraesCS3D01G420400 chr3A 667946594 667951790 5196 False 3584.0 6408 92.13150 2 5012 2 chr3A.!!$F3 5010
4 TraesCS3D01G420400 chr3A 669525470 669525976 506 False 309.0 309 78.16100 3967 4478 1 chr3A.!!$F1 511
5 TraesCS3D01G420400 chr3A 669564383 669564944 561 False 283.0 283 76.29800 3967 4533 1 chr3A.!!$F2 566
6 TraesCS3D01G420400 chr3B 705001328 705006757 5429 False 1772.5 3339 90.58275 47 5349 4 chr3B.!!$F3 5302
7 TraesCS3D01G420400 chr3B 705547755 705548261 506 False 309.0 309 78.11900 3967 4478 1 chr3B.!!$F1 511
8 TraesCS3D01G420400 chr3B 705564613 705565121 508 False 289.0 289 77.30800 3967 4478 1 chr3B.!!$F2 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
592 596 0.032615 TCCATCCATTTTTCCGGGGG 60.033 55.000 0.00 0.0 0.00 5.40 F
1192 1481 0.322997 TGGTAATTTCCGTGCCCCAG 60.323 55.000 0.00 0.0 0.00 4.45 F
1432 1725 0.881796 GTTGGCGAAAGGGAGGAAAG 59.118 55.000 0.00 0.0 0.00 2.62 F
2032 2333 1.002430 CCAGCTGTTGAAGTAGCCAGA 59.998 52.381 13.81 0.0 40.76 3.86 F
3230 3557 2.157738 GGCTTGCACATTCTGAGTTCT 58.842 47.619 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2342 2644 0.390998 GCCTTGCCTGAGACAGAGAC 60.391 60.000 0.00 0.00 32.44 3.36 R
2897 3199 0.751643 GCGGAATGGCCACCAAGTAT 60.752 55.000 8.16 0.00 36.95 2.12 R
2914 3216 2.179018 CTTTCAACGGGCATGGCG 59.821 61.111 13.76 11.05 0.00 5.69 R
3616 3980 0.755327 ACAGAACAAACCACCAGCCC 60.755 55.000 0.00 0.00 0.00 5.19 R
4927 6597 0.465460 TCGAGCCCAGCAACAACTTT 60.465 50.000 0.00 0.00 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.756294 CGCCACCCACCTCATGTATA 59.244 55.000 0.00 0.00 0.00 1.47
25 26 1.347707 CGCCACCCACCTCATGTATAT 59.652 52.381 0.00 0.00 0.00 0.86
30 31 5.045578 GCCACCCACCTCATGTATATAGATT 60.046 44.000 0.00 0.00 0.00 2.40
33 34 7.256655 CCACCCACCTCATGTATATAGATTTCA 60.257 40.741 0.00 0.00 0.00 2.69
145 147 2.765969 CCTGCCACCACCTTCCAT 59.234 61.111 0.00 0.00 0.00 3.41
146 148 1.679977 CCTGCCACCACCTTCCATG 60.680 63.158 0.00 0.00 0.00 3.66
195 197 2.276740 CTGCCACCATCTTCCCCC 59.723 66.667 0.00 0.00 0.00 5.40
209 211 4.474642 CCCCCTTCCGACTAGGTT 57.525 61.111 0.00 0.00 41.99 3.50
233 235 0.469917 CCGCCCTTGGTGACATATCT 59.530 55.000 0.00 0.00 42.32 1.98
248 250 5.185828 TGACATATCTCATACCCTTCATCCG 59.814 44.000 0.00 0.00 0.00 4.18
285 287 2.031360 GCATCATTGCTGCCTCCTC 58.969 57.895 0.96 0.00 45.77 3.71
317 319 7.362229 CGACTACCAGTCTTCAATCTAACTTCT 60.362 40.741 4.91 0.00 42.92 2.85
332 334 4.901197 AACTTCTCTCTCCTCCTTTTCC 57.099 45.455 0.00 0.00 0.00 3.13
334 336 4.498493 ACTTCTCTCTCCTCCTTTTCCTT 58.502 43.478 0.00 0.00 0.00 3.36
345 347 5.900123 TCCTCCTTTTCCTTTAGATCTCGAT 59.100 40.000 0.00 0.00 0.00 3.59
354 356 8.722622 TTCCTTTAGATCTCGATAAATACCCT 57.277 34.615 0.00 0.00 0.00 4.34
357 359 8.585881 CCTTTAGATCTCGATAAATACCCTCAA 58.414 37.037 0.00 0.00 0.00 3.02
358 360 9.413048 CTTTAGATCTCGATAAATACCCTCAAC 57.587 37.037 0.00 0.00 0.00 3.18
373 375 2.387757 CTCAACCCACCCCCATAAATG 58.612 52.381 0.00 0.00 0.00 2.32
383 385 2.316108 CCCCATAAATGCTAACCACCC 58.684 52.381 0.00 0.00 0.00 4.61
393 395 2.325393 CTAACCACCCAGGCGATCCC 62.325 65.000 0.00 0.00 43.14 3.85
395 397 3.411517 CCACCCAGGCGATCCCTT 61.412 66.667 0.35 0.00 43.06 3.95
396 398 2.190578 CACCCAGGCGATCCCTTC 59.809 66.667 0.35 0.00 43.06 3.46
400 402 2.812619 CCAGGCGATCCCTTCTCCC 61.813 68.421 0.35 0.00 43.06 4.30
401 403 2.066393 CAGGCGATCCCTTCTCCCA 61.066 63.158 0.35 0.00 43.06 4.37
402 404 2.066999 AGGCGATCCCTTCTCCCAC 61.067 63.158 0.00 0.00 43.06 4.61
403 405 2.107141 GCGATCCCTTCTCCCACG 59.893 66.667 0.00 0.00 0.00 4.94
404 406 2.815308 CGATCCCTTCTCCCACGG 59.185 66.667 0.00 0.00 0.00 4.94
452 454 2.220133 AGACAACACGTTTGTATCACGC 59.780 45.455 13.57 4.00 41.53 5.34
494 498 2.092291 CGTCGCCGCACAAGTATGT 61.092 57.895 0.00 0.00 41.61 2.29
506 510 4.761745 CACAAGTATGTCGACACAAACTG 58.238 43.478 22.71 16.24 37.82 3.16
507 511 3.807622 ACAAGTATGTCGACACAAACTGG 59.192 43.478 22.71 22.06 33.41 4.00
576 580 7.465353 TGTGCTCTAAAATGATTTTCATCCA 57.535 32.000 6.40 0.00 35.76 3.41
587 591 8.741603 AATGATTTTCATCCATCCATTTTTCC 57.258 30.769 0.00 0.00 35.76 3.13
588 592 6.339730 TGATTTTCATCCATCCATTTTTCCG 58.660 36.000 0.00 0.00 0.00 4.30
589 593 4.734398 TTTCATCCATCCATTTTTCCGG 57.266 40.909 0.00 0.00 0.00 5.14
590 594 2.665165 TCATCCATCCATTTTTCCGGG 58.335 47.619 0.00 0.00 0.00 5.73
591 595 1.688197 CATCCATCCATTTTTCCGGGG 59.312 52.381 0.00 0.00 0.00 5.73
592 596 0.032615 TCCATCCATTTTTCCGGGGG 60.033 55.000 0.00 0.00 0.00 5.40
593 597 0.032615 CCATCCATTTTTCCGGGGGA 60.033 55.000 0.00 0.00 0.00 4.81
594 598 1.412937 CCATCCATTTTTCCGGGGGAT 60.413 52.381 0.00 2.24 38.87 3.85
595 599 2.397597 CATCCATTTTTCCGGGGGATT 58.602 47.619 0.00 0.00 36.24 3.01
596 600 3.571590 CATCCATTTTTCCGGGGGATTA 58.428 45.455 0.00 0.00 36.24 1.75
597 601 3.306472 TCCATTTTTCCGGGGGATTAG 57.694 47.619 0.00 0.00 0.00 1.73
598 602 2.853707 TCCATTTTTCCGGGGGATTAGA 59.146 45.455 0.00 0.00 0.00 2.10
599 603 3.465588 TCCATTTTTCCGGGGGATTAGAT 59.534 43.478 0.00 0.00 0.00 1.98
600 604 3.573967 CCATTTTTCCGGGGGATTAGATG 59.426 47.826 0.00 0.00 0.00 2.90
601 605 4.469657 CATTTTTCCGGGGGATTAGATGA 58.530 43.478 0.00 0.00 0.00 2.92
602 606 4.806952 TTTTTCCGGGGGATTAGATGAT 57.193 40.909 0.00 0.00 0.00 2.45
603 607 4.806952 TTTTCCGGGGGATTAGATGATT 57.193 40.909 0.00 0.00 0.00 2.57
604 608 5.915744 TTTTCCGGGGGATTAGATGATTA 57.084 39.130 0.00 0.00 0.00 1.75
605 609 5.499004 TTTCCGGGGGATTAGATGATTAG 57.501 43.478 0.00 0.00 0.00 1.73
606 610 2.838202 TCCGGGGGATTAGATGATTAGC 59.162 50.000 0.00 0.00 0.00 3.09
607 611 2.092914 CCGGGGGATTAGATGATTAGCC 60.093 54.545 0.00 0.00 0.00 3.93
608 612 2.092914 CGGGGGATTAGATGATTAGCCC 60.093 54.545 0.00 0.00 0.00 5.19
609 613 3.653835 GGGGATTAGATGATTAGCCCC 57.346 52.381 0.00 0.00 46.15 5.80
611 615 4.227864 GGGATTAGATGATTAGCCCCAG 57.772 50.000 0.00 0.00 32.98 4.45
612 616 3.846588 GGGATTAGATGATTAGCCCCAGA 59.153 47.826 0.00 0.00 32.98 3.86
613 617 4.323868 GGGATTAGATGATTAGCCCCAGAC 60.324 50.000 0.00 0.00 32.98 3.51
614 618 4.534103 GGATTAGATGATTAGCCCCAGACT 59.466 45.833 0.00 0.00 0.00 3.24
615 619 5.013599 GGATTAGATGATTAGCCCCAGACTT 59.986 44.000 0.00 0.00 0.00 3.01
616 620 3.853355 AGATGATTAGCCCCAGACTTG 57.147 47.619 0.00 0.00 0.00 3.16
617 621 3.118531 AGATGATTAGCCCCAGACTTGT 58.881 45.455 0.00 0.00 0.00 3.16
618 622 3.135530 AGATGATTAGCCCCAGACTTGTC 59.864 47.826 0.00 0.00 0.00 3.18
619 623 2.551270 TGATTAGCCCCAGACTTGTCT 58.449 47.619 0.00 0.00 0.00 3.41
620 624 2.501723 TGATTAGCCCCAGACTTGTCTC 59.498 50.000 0.00 0.00 0.00 3.36
621 625 2.024176 TTAGCCCCAGACTTGTCTCA 57.976 50.000 0.00 0.00 0.00 3.27
622 626 2.024176 TAGCCCCAGACTTGTCTCAA 57.976 50.000 0.00 0.00 0.00 3.02
623 627 1.366319 AGCCCCAGACTTGTCTCAAT 58.634 50.000 0.00 0.00 0.00 2.57
624 628 1.004044 AGCCCCAGACTTGTCTCAATG 59.996 52.381 0.00 0.00 0.00 2.82
625 629 1.952367 GCCCCAGACTTGTCTCAATGG 60.952 57.143 0.00 0.57 0.00 3.16
626 630 1.457346 CCCAGACTTGTCTCAATGGC 58.543 55.000 0.00 0.00 0.00 4.40
627 631 1.271543 CCCAGACTTGTCTCAATGGCA 60.272 52.381 0.00 0.00 0.00 4.92
628 632 2.507484 CCAGACTTGTCTCAATGGCAA 58.493 47.619 0.00 0.00 38.03 4.52
633 637 0.961019 TTGTCTCAATGGCAAGTGGC 59.039 50.000 0.00 0.00 35.04 5.01
654 658 3.728373 GGCCCCACCCGTCAATCT 61.728 66.667 0.00 0.00 0.00 2.40
655 659 2.124695 GCCCCACCCGTCAATCTC 60.125 66.667 0.00 0.00 0.00 2.75
656 660 2.966732 GCCCCACCCGTCAATCTCA 61.967 63.158 0.00 0.00 0.00 3.27
657 661 1.682849 CCCCACCCGTCAATCTCAA 59.317 57.895 0.00 0.00 0.00 3.02
658 662 0.676782 CCCCACCCGTCAATCTCAAC 60.677 60.000 0.00 0.00 0.00 3.18
659 663 0.676782 CCCACCCGTCAATCTCAACC 60.677 60.000 0.00 0.00 0.00 3.77
660 664 0.676782 CCACCCGTCAATCTCAACCC 60.677 60.000 0.00 0.00 0.00 4.11
661 665 1.019278 CACCCGTCAATCTCAACCCG 61.019 60.000 0.00 0.00 0.00 5.28
662 666 1.449601 CCCGTCAATCTCAACCCGG 60.450 63.158 0.00 0.00 35.32 5.73
663 667 1.449601 CCGTCAATCTCAACCCGGG 60.450 63.158 22.25 22.25 0.00 5.73
664 668 1.594833 CGTCAATCTCAACCCGGGA 59.405 57.895 32.02 3.67 0.00 5.14
665 669 0.460284 CGTCAATCTCAACCCGGGAG 60.460 60.000 32.02 19.82 0.00 4.30
702 926 5.830000 AGTGAAAAGTAAAGTGTGGGTTC 57.170 39.130 0.00 0.00 0.00 3.62
712 936 8.375493 AGTAAAGTGTGGGTTCTGATCTAATA 57.625 34.615 0.00 0.00 0.00 0.98
732 956 9.326413 TCTAATATCTCCCATTTTTCGTTCTTC 57.674 33.333 0.00 0.00 0.00 2.87
736 960 7.996098 ATCTCCCATTTTTCGTTCTTCTAAA 57.004 32.000 0.00 0.00 0.00 1.85
795 1052 3.304458 CGTCAGGTTTGGTAAGAAAAGCC 60.304 47.826 0.00 0.00 36.01 4.35
816 1073 3.219198 GAATCCCCATGTGCGGCC 61.219 66.667 0.00 0.00 0.00 6.13
885 1142 2.177580 CACGCGGTGGTTGTTGAGT 61.178 57.895 12.47 0.00 0.00 3.41
939 1196 1.227674 GATGGGCCTACAGCTTCCG 60.228 63.158 4.53 0.00 43.05 4.30
945 1202 1.218316 CCTACAGCTTCCGGTCCAC 59.782 63.158 0.00 0.00 0.00 4.02
946 1203 1.218316 CTACAGCTTCCGGTCCACC 59.782 63.158 0.00 0.00 0.00 4.61
1192 1481 0.322997 TGGTAATTTCCGTGCCCCAG 60.323 55.000 0.00 0.00 0.00 4.45
1364 1653 2.707257 GGAGATACGGGGTTTTGGGATA 59.293 50.000 0.00 0.00 0.00 2.59
1432 1725 0.881796 GTTGGCGAAAGGGAGGAAAG 59.118 55.000 0.00 0.00 0.00 2.62
1574 1870 1.773391 ATGGAGGGGAGGGCATGAG 60.773 63.158 0.00 0.00 0.00 2.90
1591 1887 6.767902 GGGCATGAGAAGATTAGATGTTTGTA 59.232 38.462 0.00 0.00 0.00 2.41
1723 2024 6.877611 TTTGTCCACAATCTAACCTCTTTC 57.122 37.500 0.00 0.00 35.55 2.62
1773 2074 4.946157 AGACATGCCTTTTCAGGAATAGTG 59.054 41.667 0.00 0.00 44.19 2.74
2008 2309 4.500887 CGACAGTTTCTGGACCTGAACTTA 60.501 45.833 12.96 0.00 35.51 2.24
2032 2333 1.002430 CCAGCTGTTGAAGTAGCCAGA 59.998 52.381 13.81 0.00 40.76 3.86
2179 2480 4.590222 GGCATGAATAGTTTCCCCATCAAT 59.410 41.667 0.00 0.00 0.00 2.57
2239 2540 2.203209 CCGCCCCCTCAAGTATGC 60.203 66.667 0.00 0.00 0.00 3.14
2257 2558 5.882557 AGTATGCTCCTTATGTTTGGTTCTG 59.117 40.000 0.00 0.00 0.00 3.02
2315 2617 6.500684 TTATGATTGTTTGAGAAGGAGCAC 57.499 37.500 0.00 0.00 0.00 4.40
2342 2644 9.778993 CAAGTACCTGATGATATTGTTTTTCAG 57.221 33.333 0.00 0.00 0.00 3.02
2350 2652 8.939929 TGATGATATTGTTTTTCAGTCTCTGTC 58.060 33.333 0.00 0.00 32.61 3.51
2784 3086 2.224378 TGTGCTCTTTCTGAGTCCAAGG 60.224 50.000 0.00 0.00 44.41 3.61
2825 3127 3.033659 TGTTTTAAGGGCCAGGTTTCA 57.966 42.857 6.18 0.00 0.00 2.69
2914 3216 6.717289 TGTATATATACTTGGTGGCCATTCC 58.283 40.000 20.80 7.18 34.41 3.01
2980 3287 6.237154 TGTTGTTGTCATGATCTGATGGTTA 58.763 36.000 0.00 0.00 35.97 2.85
3065 3372 7.329717 GGACATCACACTACAAAACAAACAAAA 59.670 33.333 0.00 0.00 0.00 2.44
3223 3550 4.592942 TGAAATCTAGGCTTGCACATTCT 58.407 39.130 0.00 0.00 0.00 2.40
3230 3557 2.157738 GGCTTGCACATTCTGAGTTCT 58.842 47.619 0.00 0.00 0.00 3.01
3268 3595 3.023119 AGATTTGCCTGTTGTGTGTTGA 58.977 40.909 0.00 0.00 0.00 3.18
3351 3688 6.602410 TTTCCATGATGCTTGGTGAAATTA 57.398 33.333 0.00 0.00 35.64 1.40
3400 3764 2.772077 TTGCCTTACACGCCTTATCA 57.228 45.000 0.00 0.00 0.00 2.15
3441 3805 5.474578 TGGTTGCCATTTACATTAAAGCA 57.525 34.783 0.00 0.00 30.19 3.91
3534 3898 3.055094 CCATGGATCCTTATTAGGGACGG 60.055 52.174 14.23 0.00 42.26 4.79
3616 3980 5.347364 ACTGTTCGTTCCATTTTGTTTGTTG 59.653 36.000 0.00 0.00 0.00 3.33
3790 4154 4.202223 TGTTAGCGTCAAGTCTCTTCCTTT 60.202 41.667 0.00 0.00 0.00 3.11
3791 4155 2.760374 AGCGTCAAGTCTCTTCCTTTG 58.240 47.619 0.00 0.00 0.00 2.77
3806 4170 7.445402 TCTCTTCCTTTGGATTTACTCAGTTTG 59.555 37.037 0.00 0.00 0.00 2.93
3945 4310 6.591834 CCTGTCTCAGAACTTTATGTTGTAGG 59.408 42.308 0.00 0.00 39.30 3.18
3950 4315 5.932303 TCAGAACTTTATGTTGTAGGCAGAC 59.068 40.000 0.00 0.00 39.30 3.51
3965 4330 8.867112 TGTAGGCAGACGTATATTTTCTTTAG 57.133 34.615 0.00 0.00 0.00 1.85
4013 4385 5.050490 CCGTCTTCCCATCTATTAACAGTG 58.950 45.833 0.00 0.00 0.00 3.66
4183 4555 3.391506 ACCGGTAAGAACTTGTACACC 57.608 47.619 4.49 0.00 0.00 4.16
4268 4642 4.982701 AGCCCAAGGTGGTGCAGC 62.983 66.667 9.47 9.47 36.55 5.25
4435 4809 4.392166 TGCCCTACCTGCCGGAGA 62.392 66.667 5.05 0.00 0.00 3.71
4490 4864 3.306780 CCTCCCGACGGCAGATAATTAAT 60.307 47.826 6.34 0.00 0.00 1.40
4803 6473 4.405680 AGCTTTTTCCTGCTTGTTTAGGTT 59.594 37.500 0.00 0.00 35.86 3.50
4898 6568 3.401033 TCCTGTCACACCAACACATAG 57.599 47.619 0.00 0.00 0.00 2.23
5012 6685 6.148186 TCATACCAGTTTAGGCCCTATTAGT 58.852 40.000 0.00 0.00 0.00 2.24
5035 6708 4.173036 ACGCATGAATGTTCGGAAAAAT 57.827 36.364 0.00 0.00 0.00 1.82
5204 7599 6.884832 CCACATGAATCTTAGTAGGTGGTTA 58.115 40.000 0.00 0.00 39.65 2.85
5217 7612 4.895668 AGGTGGTTAGATTACGGACAAA 57.104 40.909 0.00 0.00 0.00 2.83
5281 7677 5.617528 TCCAAACTATAATAGTGGCGGAA 57.382 39.130 0.00 0.00 39.39 4.30
5321 7717 2.511600 CTTGCCCGGGCTCGTTAG 60.512 66.667 43.34 27.08 42.51 2.34
5325 7721 3.090219 GCCCGGGCTCGTTAGTCAT 62.090 63.158 38.76 0.00 38.26 3.06
5407 7803 8.753497 AAAATACATTCTACTCCTTCCATTCC 57.247 34.615 0.00 0.00 0.00 3.01
5408 7804 7.451731 AATACATTCTACTCCTTCCATTCCA 57.548 36.000 0.00 0.00 0.00 3.53
5409 7805 5.983333 ACATTCTACTCCTTCCATTCCAT 57.017 39.130 0.00 0.00 0.00 3.41
5410 7806 8.742125 ATACATTCTACTCCTTCCATTCCATA 57.258 34.615 0.00 0.00 0.00 2.74
5411 7807 7.451731 ACATTCTACTCCTTCCATTCCATAA 57.548 36.000 0.00 0.00 0.00 1.90
5412 7808 8.050316 ACATTCTACTCCTTCCATTCCATAAT 57.950 34.615 0.00 0.00 0.00 1.28
5413 7809 7.941238 ACATTCTACTCCTTCCATTCCATAATG 59.059 37.037 0.00 0.00 41.90 1.90
5414 7810 7.451731 TTCTACTCCTTCCATTCCATAATGT 57.548 36.000 0.00 0.00 40.84 2.71
5415 7811 8.561536 TTCTACTCCTTCCATTCCATAATGTA 57.438 34.615 0.00 0.00 40.84 2.29
5416 7812 8.561536 TCTACTCCTTCCATTCCATAATGTAA 57.438 34.615 0.00 0.00 40.84 2.41
5417 7813 8.998814 TCTACTCCTTCCATTCCATAATGTAAA 58.001 33.333 0.00 0.00 40.84 2.01
5418 7814 9.627123 CTACTCCTTCCATTCCATAATGTAAAA 57.373 33.333 0.00 0.00 40.84 1.52
5419 7815 8.293699 ACTCCTTCCATTCCATAATGTAAAAC 57.706 34.615 0.00 0.00 40.84 2.43
5420 7816 7.067008 ACTCCTTCCATTCCATAATGTAAAACG 59.933 37.037 0.00 0.00 40.84 3.60
5421 7817 5.977129 CCTTCCATTCCATAATGTAAAACGC 59.023 40.000 0.00 0.00 40.84 4.84
5422 7818 6.183360 CCTTCCATTCCATAATGTAAAACGCT 60.183 38.462 0.00 0.00 40.84 5.07
5423 7819 6.767524 TCCATTCCATAATGTAAAACGCTT 57.232 33.333 0.00 0.00 40.84 4.68
5424 7820 7.164230 TCCATTCCATAATGTAAAACGCTTT 57.836 32.000 0.00 0.00 40.84 3.51
5425 7821 7.607250 TCCATTCCATAATGTAAAACGCTTTT 58.393 30.769 0.00 0.00 40.84 2.27
5426 7822 8.091449 TCCATTCCATAATGTAAAACGCTTTTT 58.909 29.630 6.16 6.16 40.84 1.94
5427 7823 8.167985 CCATTCCATAATGTAAAACGCTTTTTG 58.832 33.333 10.91 0.00 40.84 2.44
5428 7824 7.644986 TTCCATAATGTAAAACGCTTTTTGG 57.355 32.000 10.91 3.01 35.62 3.28
5429 7825 5.635700 TCCATAATGTAAAACGCTTTTTGGC 59.364 36.000 10.91 4.88 35.62 4.52
5430 7826 5.406780 CCATAATGTAAAACGCTTTTTGGCA 59.593 36.000 10.91 9.76 35.62 4.92
5431 7827 4.787381 AATGTAAAACGCTTTTTGGCAC 57.213 36.364 10.91 2.56 35.62 5.01
5432 7828 3.512033 TGTAAAACGCTTTTTGGCACT 57.488 38.095 10.91 0.00 35.62 4.40
5433 7829 4.634184 TGTAAAACGCTTTTTGGCACTA 57.366 36.364 10.91 0.00 35.62 2.74
5434 7830 5.189659 TGTAAAACGCTTTTTGGCACTAT 57.810 34.783 10.91 0.00 35.62 2.12
5435 7831 6.315091 TGTAAAACGCTTTTTGGCACTATA 57.685 33.333 10.91 0.00 35.62 1.31
5436 7832 6.144175 TGTAAAACGCTTTTTGGCACTATAC 58.856 36.000 10.91 0.00 35.62 1.47
5437 7833 5.447624 AAAACGCTTTTTGGCACTATACT 57.552 34.783 0.00 0.00 33.45 2.12
5438 7834 6.563222 AAAACGCTTTTTGGCACTATACTA 57.437 33.333 0.00 0.00 33.45 1.82
5439 7835 5.796350 AACGCTTTTTGGCACTATACTAG 57.204 39.130 0.00 0.00 0.00 2.57
5440 7836 5.080969 ACGCTTTTTGGCACTATACTAGA 57.919 39.130 0.00 0.00 0.00 2.43
5441 7837 5.109903 ACGCTTTTTGGCACTATACTAGAG 58.890 41.667 0.00 0.00 0.00 2.43
5442 7838 5.109903 CGCTTTTTGGCACTATACTAGAGT 58.890 41.667 0.00 0.00 0.00 3.24
5443 7839 6.127535 ACGCTTTTTGGCACTATACTAGAGTA 60.128 38.462 0.00 0.00 34.67 2.59
5444 7840 6.755141 CGCTTTTTGGCACTATACTAGAGTAA 59.245 38.462 0.00 0.00 33.76 2.24
5482 7878 8.789767 ACATTATGGGATAGAGGGAGTATATG 57.210 38.462 0.00 0.00 0.00 1.78
5483 7879 8.355256 ACATTATGGGATAGAGGGAGTATATGT 58.645 37.037 0.00 0.00 0.00 2.29
5484 7880 9.218525 CATTATGGGATAGAGGGAGTATATGTT 57.781 37.037 0.00 0.00 0.00 2.71
5486 7882 7.741554 ATGGGATAGAGGGAGTATATGTTTC 57.258 40.000 0.00 0.00 0.00 2.78
5488 7884 6.954684 TGGGATAGAGGGAGTATATGTTTCTC 59.045 42.308 0.00 0.00 0.00 2.87
5489 7885 7.186268 GGGATAGAGGGAGTATATGTTTCTCT 58.814 42.308 0.00 0.00 34.87 3.10
5490 7886 8.337739 GGGATAGAGGGAGTATATGTTTCTCTA 58.662 40.741 0.00 0.00 36.97 2.43
5491 7887 9.403583 GGATAGAGGGAGTATATGTTTCTCTAG 57.596 40.741 0.00 0.00 36.31 2.43
5493 7889 7.409408 AGAGGGAGTATATGTTTCTCTAGGA 57.591 40.000 0.00 0.00 0.00 2.94
5494 7890 7.235804 AGAGGGAGTATATGTTTCTCTAGGAC 58.764 42.308 0.00 0.00 0.00 3.85
5495 7891 6.005198 AGGGAGTATATGTTTCTCTAGGACG 58.995 44.000 0.00 0.00 0.00 4.79
5496 7892 5.183522 GGGAGTATATGTTTCTCTAGGACGG 59.816 48.000 0.00 0.00 0.00 4.79
5497 7893 5.335819 GGAGTATATGTTTCTCTAGGACGGC 60.336 48.000 0.00 0.00 0.00 5.68
5498 7894 3.644884 ATATGTTTCTCTAGGACGGCG 57.355 47.619 4.80 4.80 0.00 6.46
5499 7895 1.183549 ATGTTTCTCTAGGACGGCGT 58.816 50.000 14.65 14.65 0.00 5.68
5500 7896 0.242825 TGTTTCTCTAGGACGGCGTG 59.757 55.000 21.19 2.12 0.00 5.34
5502 7898 0.896940 TTTCTCTAGGACGGCGTGGT 60.897 55.000 21.19 6.62 0.00 4.16
5504 7900 0.035152 TCTCTAGGACGGCGTGGTTA 60.035 55.000 21.19 5.89 0.00 2.85
5505 7901 0.813184 CTCTAGGACGGCGTGGTTAA 59.187 55.000 21.19 0.00 0.00 2.01
5506 7902 1.203052 CTCTAGGACGGCGTGGTTAAA 59.797 52.381 21.19 0.00 0.00 1.52
5507 7903 1.826720 TCTAGGACGGCGTGGTTAAAT 59.173 47.619 21.19 0.00 0.00 1.40
5510 7906 1.826720 AGGACGGCGTGGTTAAATAGA 59.173 47.619 21.19 0.00 0.00 1.98
5512 7908 3.118519 AGGACGGCGTGGTTAAATAGATT 60.119 43.478 21.19 0.00 0.00 2.40
5514 7910 4.810491 GGACGGCGTGGTTAAATAGATTTA 59.190 41.667 21.19 0.00 0.00 1.40
5516 7912 4.812626 ACGGCGTGGTTAAATAGATTTAGG 59.187 41.667 13.76 0.00 34.13 2.69
5517 7913 4.212636 CGGCGTGGTTAAATAGATTTAGGG 59.787 45.833 0.00 0.00 34.13 3.53
5518 7914 4.023450 GGCGTGGTTAAATAGATTTAGGGC 60.023 45.833 0.00 0.00 34.13 5.19
5519 7915 4.820173 GCGTGGTTAAATAGATTTAGGGCT 59.180 41.667 0.00 0.00 34.13 5.19
5520 7916 5.298527 GCGTGGTTAAATAGATTTAGGGCTT 59.701 40.000 0.00 0.00 34.13 4.35
5537 7933 9.788889 TTTAGGGCTTAAATTTATAGGCTAGAC 57.211 33.333 21.61 10.16 35.08 2.59
5540 7936 7.038231 AGGGCTTAAATTTATAGGCTAGACGAT 60.038 37.037 21.61 0.00 35.08 3.73
5541 7937 7.278203 GGGCTTAAATTTATAGGCTAGACGATC 59.722 40.741 21.61 8.74 35.08 3.69
5542 7938 7.009357 GGCTTAAATTTATAGGCTAGACGATCG 59.991 40.741 14.88 14.88 0.00 3.69
5543 7939 7.009357 GCTTAAATTTATAGGCTAGACGATCGG 59.991 40.741 20.98 2.04 0.00 4.18
5545 7941 1.747709 TATAGGCTAGACGATCGGGC 58.252 55.000 20.98 16.44 0.00 6.13
5546 7942 0.251209 ATAGGCTAGACGATCGGGCA 60.251 55.000 20.98 2.25 0.00 5.36
5547 7943 0.251209 TAGGCTAGACGATCGGGCAT 60.251 55.000 20.98 16.58 0.00 4.40
5548 7944 1.115930 AGGCTAGACGATCGGGCATT 61.116 55.000 20.98 0.00 0.00 3.56
5549 7945 0.249911 GGCTAGACGATCGGGCATTT 60.250 55.000 20.98 0.00 0.00 2.32
5550 7946 0.861837 GCTAGACGATCGGGCATTTG 59.138 55.000 20.98 3.91 0.00 2.32
5566 7962 5.895216 GCATTTGCCTCATTATTTAGCAC 57.105 39.130 0.00 0.00 32.18 4.40
5568 7964 5.232838 GCATTTGCCTCATTATTTAGCACAC 59.767 40.000 0.00 0.00 32.18 3.82
5569 7965 4.981806 TTGCCTCATTATTTAGCACACC 57.018 40.909 0.00 0.00 32.18 4.16
5570 7966 3.961849 TGCCTCATTATTTAGCACACCA 58.038 40.909 0.00 0.00 0.00 4.17
5571 7967 3.947196 TGCCTCATTATTTAGCACACCAG 59.053 43.478 0.00 0.00 0.00 4.00
5572 7968 3.947834 GCCTCATTATTTAGCACACCAGT 59.052 43.478 0.00 0.00 0.00 4.00
5574 7970 4.336433 CCTCATTATTTAGCACACCAGTGG 59.664 45.833 7.91 7.91 45.98 4.00
5587 7983 7.834068 GCACACCAGTGGTATATTCTATATG 57.166 40.000 16.22 0.02 45.98 1.78
5589 7985 7.878127 GCACACCAGTGGTATATTCTATATGTT 59.122 37.037 16.22 0.00 45.98 2.71
5590 7986 9.778741 CACACCAGTGGTATATTCTATATGTTT 57.221 33.333 16.22 0.00 42.13 2.83
5591 7987 9.998106 ACACCAGTGGTATATTCTATATGTTTC 57.002 33.333 16.22 0.00 32.11 2.78
5611 8007 7.565680 TGTTTCTCTTTTCTTACAACCTCTCT 58.434 34.615 0.00 0.00 0.00 3.10
5613 8009 9.713713 GTTTCTCTTTTCTTACAACCTCTCTAT 57.286 33.333 0.00 0.00 0.00 1.98
5627 8023 9.739276 ACAACCTCTCTATTTTGAATATGTTCA 57.261 29.630 0.03 0.03 42.41 3.18
5640 8036 7.523293 TGAATATGTTCAAATCACAACACCT 57.477 32.000 1.92 0.00 41.22 4.00
5641 8037 8.628630 TGAATATGTTCAAATCACAACACCTA 57.371 30.769 1.92 0.00 41.22 3.08
5642 8038 9.072375 TGAATATGTTCAAATCACAACACCTAA 57.928 29.630 1.92 0.00 41.22 2.69
5648 8044 9.743057 TGTTCAAATCACAACACCTAATTTAAG 57.257 29.630 0.00 0.00 0.00 1.85
5649 8045 9.744468 GTTCAAATCACAACACCTAATTTAAGT 57.256 29.630 0.00 0.00 0.00 2.24
5650 8046 9.743057 TTCAAATCACAACACCTAATTTAAGTG 57.257 29.630 4.04 4.04 37.53 3.16
5651 8047 9.126151 TCAAATCACAACACCTAATTTAAGTGA 57.874 29.630 11.26 0.00 38.86 3.41
5652 8048 9.743057 CAAATCACAACACCTAATTTAAGTGAA 57.257 29.630 11.26 0.00 38.14 3.18
5699 8095 8.696374 TCTTGTAGTGTCTTCTAGGATATTTGG 58.304 37.037 0.00 0.00 0.00 3.28
5700 8096 8.603898 TTGTAGTGTCTTCTAGGATATTTGGA 57.396 34.615 0.00 0.00 0.00 3.53
5701 8097 8.783660 TGTAGTGTCTTCTAGGATATTTGGAT 57.216 34.615 0.00 0.00 0.00 3.41
5702 8098 8.642432 TGTAGTGTCTTCTAGGATATTTGGATG 58.358 37.037 0.00 0.00 0.00 3.51
5705 8101 7.510685 AGTGTCTTCTAGGATATTTGGATGCTA 59.489 37.037 0.00 0.00 0.00 3.49
5706 8102 8.150945 GTGTCTTCTAGGATATTTGGATGCTAA 58.849 37.037 0.00 0.00 30.36 3.09
5707 8103 8.884323 TGTCTTCTAGGATATTTGGATGCTAAT 58.116 33.333 0.00 0.00 30.36 1.73
5708 8104 9.732130 GTCTTCTAGGATATTTGGATGCTAATT 57.268 33.333 0.00 0.00 30.36 1.40
5722 8118 8.195165 TGGATGCTAATTTAGATAGCTACACT 57.805 34.615 7.63 1.28 44.79 3.55
5724 8120 9.145865 GGATGCTAATTTAGATAGCTACACTTC 57.854 37.037 7.63 0.00 44.79 3.01
5725 8121 9.921637 GATGCTAATTTAGATAGCTACACTTCT 57.078 33.333 7.63 0.00 44.79 2.85
5747 8143 1.136961 TGGTAACATGGCACCCTCCA 61.137 55.000 13.66 0.00 46.17 3.86
5748 8144 0.039035 GGTAACATGGCACCCTCCAA 59.961 55.000 6.71 0.00 39.96 3.53
5749 8145 1.549037 GGTAACATGGCACCCTCCAAA 60.549 52.381 6.71 0.00 39.96 3.28
5750 8146 2.456577 GTAACATGGCACCCTCCAAAT 58.543 47.619 0.00 0.00 39.96 2.32
5751 8147 2.917713 AACATGGCACCCTCCAAATA 57.082 45.000 0.00 0.00 39.96 1.40
5752 8148 2.143876 ACATGGCACCCTCCAAATAC 57.856 50.000 0.00 0.00 39.96 1.89
5754 8150 0.261696 ATGGCACCCTCCAAATACCC 59.738 55.000 0.00 0.00 39.96 3.69
5755 8151 1.453197 GGCACCCTCCAAATACCCG 60.453 63.158 0.00 0.00 0.00 5.28
5756 8152 2.119029 GCACCCTCCAAATACCCGC 61.119 63.158 0.00 0.00 0.00 6.13
5757 8153 1.301623 CACCCTCCAAATACCCGCA 59.698 57.895 0.00 0.00 0.00 5.69
5758 8154 0.322997 CACCCTCCAAATACCCGCAA 60.323 55.000 0.00 0.00 0.00 4.85
5759 8155 0.406361 ACCCTCCAAATACCCGCAAA 59.594 50.000 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.716531 CCATGAGTGTGTGAAATCTATATACAT 57.283 33.333 0.00 0.00 0.00 2.29
24 25 3.873361 CGCCATGAGTGTGTGAAATCTAT 59.127 43.478 0.00 0.00 0.00 1.98
25 26 3.261580 CGCCATGAGTGTGTGAAATCTA 58.738 45.455 0.00 0.00 0.00 1.98
30 31 1.965930 GGCGCCATGAGTGTGTGAA 60.966 57.895 24.80 0.00 0.00 3.18
33 34 2.046892 GAGGCGCCATGAGTGTGT 60.047 61.111 31.54 3.33 0.00 3.72
164 166 3.339093 GCAGGGGCCAAGGTAGGT 61.339 66.667 4.39 0.00 0.00 3.08
195 197 1.153628 CGGCAACCTAGTCGGAAGG 60.154 63.158 0.00 0.00 40.20 3.46
233 235 1.134220 GGTTGCGGATGAAGGGTATGA 60.134 52.381 0.00 0.00 0.00 2.15
277 279 1.907222 TAGTCGAGTCGGAGGAGGCA 61.907 60.000 13.54 0.00 0.00 4.75
317 319 6.507568 AGATCTAAAGGAAAAGGAGGAGAGA 58.492 40.000 0.00 0.00 0.00 3.10
332 334 9.413048 GTTGAGGGTATTTATCGAGATCTAAAG 57.587 37.037 0.00 0.00 0.00 1.85
334 336 7.039223 GGGTTGAGGGTATTTATCGAGATCTAA 60.039 40.741 0.00 0.00 0.00 2.10
345 347 1.924552 GGGGTGGGTTGAGGGTATTTA 59.075 52.381 0.00 0.00 0.00 1.40
354 356 1.621072 GCATTTATGGGGGTGGGTTGA 60.621 52.381 0.00 0.00 0.00 3.18
357 359 1.614449 TAGCATTTATGGGGGTGGGT 58.386 50.000 0.00 0.00 0.00 4.51
358 360 2.316108 GTTAGCATTTATGGGGGTGGG 58.684 52.381 0.00 0.00 0.00 4.61
373 375 1.523938 GATCGCCTGGGTGGTTAGC 60.524 63.158 0.00 0.00 38.35 3.09
383 385 2.066393 TGGGAGAAGGGATCGCCTG 61.066 63.158 6.09 0.00 46.43 4.85
393 395 1.817209 GGTAGAGCCGTGGGAGAAG 59.183 63.158 0.00 0.00 0.00 2.85
452 454 0.983378 AGCTAGGTGTGGCTTAGGGG 60.983 60.000 0.00 0.00 37.13 4.79
478 482 1.803922 CGACATACTTGTGCGGCGA 60.804 57.895 12.98 0.00 35.79 5.54
494 498 2.280524 CCGCCCAGTTTGTGTCGA 60.281 61.111 0.00 0.00 0.00 4.20
506 510 2.506881 CGAATTTTGCAGCCGCCC 60.507 61.111 0.00 0.00 37.32 6.13
507 511 3.181290 GCGAATTTTGCAGCCGCC 61.181 61.111 3.65 0.00 39.97 6.13
576 580 2.866923 AATCCCCCGGAAAAATGGAT 57.133 45.000 0.73 1.19 37.42 3.41
583 587 4.263331 GCTAATCATCTAATCCCCCGGAAA 60.263 45.833 0.73 0.00 34.34 3.13
584 588 3.263425 GCTAATCATCTAATCCCCCGGAA 59.737 47.826 0.73 0.00 34.34 4.30
585 589 2.838202 GCTAATCATCTAATCCCCCGGA 59.162 50.000 0.73 0.00 35.55 5.14
586 590 2.092914 GGCTAATCATCTAATCCCCCGG 60.093 54.545 0.00 0.00 0.00 5.73
587 591 2.092914 GGGCTAATCATCTAATCCCCCG 60.093 54.545 0.00 0.00 0.00 5.73
588 592 2.242452 GGGGCTAATCATCTAATCCCCC 59.758 54.545 2.02 0.00 44.72 5.40
589 593 3.653835 GGGGCTAATCATCTAATCCCC 57.346 52.381 0.00 0.00 44.32 4.81
590 594 3.846588 TCTGGGGCTAATCATCTAATCCC 59.153 47.826 0.00 0.00 0.00 3.85
591 595 4.534103 AGTCTGGGGCTAATCATCTAATCC 59.466 45.833 0.00 0.00 0.00 3.01
592 596 5.753721 AGTCTGGGGCTAATCATCTAATC 57.246 43.478 0.00 0.00 0.00 1.75
593 597 5.370880 ACAAGTCTGGGGCTAATCATCTAAT 59.629 40.000 0.00 0.00 0.00 1.73
594 598 4.721776 ACAAGTCTGGGGCTAATCATCTAA 59.278 41.667 0.00 0.00 0.00 2.10
595 599 4.298626 ACAAGTCTGGGGCTAATCATCTA 58.701 43.478 0.00 0.00 0.00 1.98
596 600 3.118531 ACAAGTCTGGGGCTAATCATCT 58.881 45.455 0.00 0.00 0.00 2.90
597 601 3.135530 AGACAAGTCTGGGGCTAATCATC 59.864 47.826 1.20 0.00 38.75 2.92
598 602 3.118531 AGACAAGTCTGGGGCTAATCAT 58.881 45.455 1.20 0.00 38.75 2.45
599 603 2.501723 GAGACAAGTCTGGGGCTAATCA 59.498 50.000 7.57 0.00 40.61 2.57
600 604 2.501723 TGAGACAAGTCTGGGGCTAATC 59.498 50.000 7.57 0.00 40.61 1.75
601 605 2.551270 TGAGACAAGTCTGGGGCTAAT 58.449 47.619 7.57 0.00 40.61 1.73
602 606 2.024176 TGAGACAAGTCTGGGGCTAA 57.976 50.000 7.57 0.00 40.61 3.09
603 607 2.024176 TTGAGACAAGTCTGGGGCTA 57.976 50.000 7.57 0.00 40.61 3.93
604 608 1.004044 CATTGAGACAAGTCTGGGGCT 59.996 52.381 7.57 0.00 40.61 5.19
605 609 1.457346 CATTGAGACAAGTCTGGGGC 58.543 55.000 7.57 0.00 40.61 5.80
606 610 1.952367 GCCATTGAGACAAGTCTGGGG 60.952 57.143 7.57 4.84 40.61 4.96
607 611 1.271543 TGCCATTGAGACAAGTCTGGG 60.272 52.381 7.57 5.17 40.61 4.45
608 612 2.189594 TGCCATTGAGACAAGTCTGG 57.810 50.000 7.57 4.76 40.61 3.86
609 613 3.826236 CTTGCCATTGAGACAAGTCTG 57.174 47.619 7.57 0.00 40.61 3.51
613 617 1.068055 GCCACTTGCCATTGAGACAAG 60.068 52.381 10.57 10.57 44.98 3.16
614 618 0.961019 GCCACTTGCCATTGAGACAA 59.039 50.000 0.00 0.00 0.00 3.18
615 619 2.644887 GCCACTTGCCATTGAGACA 58.355 52.632 0.00 0.00 0.00 3.41
637 641 3.699134 GAGATTGACGGGTGGGGCC 62.699 68.421 0.00 0.00 0.00 5.80
638 642 2.124695 GAGATTGACGGGTGGGGC 60.125 66.667 0.00 0.00 0.00 5.80
639 643 0.676782 GTTGAGATTGACGGGTGGGG 60.677 60.000 0.00 0.00 0.00 4.96
640 644 0.676782 GGTTGAGATTGACGGGTGGG 60.677 60.000 0.00 0.00 0.00 4.61
641 645 0.676782 GGGTTGAGATTGACGGGTGG 60.677 60.000 0.00 0.00 0.00 4.61
642 646 1.019278 CGGGTTGAGATTGACGGGTG 61.019 60.000 0.00 0.00 0.00 4.61
643 647 1.295423 CGGGTTGAGATTGACGGGT 59.705 57.895 0.00 0.00 0.00 5.28
644 648 1.449601 CCGGGTTGAGATTGACGGG 60.450 63.158 0.00 0.00 37.80 5.28
645 649 1.449601 CCCGGGTTGAGATTGACGG 60.450 63.158 14.18 0.00 40.89 4.79
646 650 0.460284 CTCCCGGGTTGAGATTGACG 60.460 60.000 22.86 0.00 31.26 4.35
647 651 0.107654 CCTCCCGGGTTGAGATTGAC 60.108 60.000 22.86 0.00 31.26 3.18
648 652 1.271840 CCCTCCCGGGTTGAGATTGA 61.272 60.000 22.86 0.00 46.12 2.57
649 653 1.224592 CCCTCCCGGGTTGAGATTG 59.775 63.158 22.86 0.00 46.12 2.67
650 654 3.741325 CCCTCCCGGGTTGAGATT 58.259 61.111 22.86 0.00 46.12 2.40
667 671 4.089361 ACTTTTCACTTTGATCATCCCCC 58.911 43.478 0.00 0.00 0.00 5.40
668 672 6.834168 TTACTTTTCACTTTGATCATCCCC 57.166 37.500 0.00 0.00 0.00 4.81
669 673 7.809806 CACTTTACTTTTCACTTTGATCATCCC 59.190 37.037 0.00 0.00 0.00 3.85
670 674 8.352942 ACACTTTACTTTTCACTTTGATCATCC 58.647 33.333 0.00 0.00 0.00 3.51
671 675 9.173939 CACACTTTACTTTTCACTTTGATCATC 57.826 33.333 0.00 0.00 0.00 2.92
672 676 8.137437 CCACACTTTACTTTTCACTTTGATCAT 58.863 33.333 0.00 0.00 0.00 2.45
673 677 7.416213 CCCACACTTTACTTTTCACTTTGATCA 60.416 37.037 0.00 0.00 0.00 2.92
674 678 6.918022 CCCACACTTTACTTTTCACTTTGATC 59.082 38.462 0.00 0.00 0.00 2.92
675 679 6.379988 ACCCACACTTTACTTTTCACTTTGAT 59.620 34.615 0.00 0.00 0.00 2.57
676 680 5.712917 ACCCACACTTTACTTTTCACTTTGA 59.287 36.000 0.00 0.00 0.00 2.69
677 681 5.961272 ACCCACACTTTACTTTTCACTTTG 58.039 37.500 0.00 0.00 0.00 2.77
702 926 8.839310 ACGAAAAATGGGAGATATTAGATCAG 57.161 34.615 0.00 0.00 0.00 2.90
712 936 7.996098 TTTAGAAGAACGAAAAATGGGAGAT 57.004 32.000 0.00 0.00 0.00 2.75
762 987 0.468226 AACCTGACGCCTGTTTCTCA 59.532 50.000 0.00 0.00 0.00 3.27
795 1052 1.889105 CGCACATGGGGATTCTCCG 60.889 63.158 0.00 0.00 37.43 4.63
816 1073 2.753966 CCATTCTCGGCCTTGTGCG 61.754 63.158 0.00 0.00 42.61 5.34
954 1211 2.747822 CCATCACTGCACTGCGCTC 61.748 63.158 9.73 0.00 43.06 5.03
956 1213 3.807538 CCCATCACTGCACTGCGC 61.808 66.667 0.00 0.00 42.89 6.09
958 1215 1.748122 CTCCCCATCACTGCACTGC 60.748 63.158 0.00 0.00 0.00 4.40
959 1216 1.077930 CCTCCCCATCACTGCACTG 60.078 63.158 0.00 0.00 0.00 3.66
962 1219 2.673200 GCTCCTCCCCATCACTGCA 61.673 63.158 0.00 0.00 0.00 4.41
994 1259 4.988716 TGGACTGGACCCGCGAGT 62.989 66.667 8.23 0.00 38.36 4.18
1225 1514 6.451393 CCCAAAATTCAGAAAAATACCACGA 58.549 36.000 0.00 0.00 0.00 4.35
1294 1583 1.950472 CGAGCACGGTTTCAACATTC 58.050 50.000 0.00 0.00 35.72 2.67
1320 1609 5.376625 CCTCGAAAATCCATCTAAATCCCA 58.623 41.667 0.00 0.00 0.00 4.37
1364 1653 7.147958 TGGAAAGAAAAATCCCCAAAATTCT 57.852 32.000 0.00 0.00 34.68 2.40
1623 1919 0.733566 GCGCACATGTCCACAATTGG 60.734 55.000 10.83 0.00 45.56 3.16
1632 1928 1.062525 GGAAATCGGCGCACATGTC 59.937 57.895 10.83 4.45 0.00 3.06
1634 1930 0.583438 CTAGGAAATCGGCGCACATG 59.417 55.000 10.83 0.00 0.00 3.21
1637 1933 0.461339 TTCCTAGGAAATCGGCGCAC 60.461 55.000 22.27 0.00 0.00 5.34
1723 2024 4.361451 AATCTACGCAATTCAAAGCAGG 57.639 40.909 0.00 0.00 0.00 4.85
1773 2074 8.309163 TCAATGGACAAATAAAGAAATGCAAC 57.691 30.769 0.00 0.00 0.00 4.17
1805 2106 6.238320 GGAATCAGATACAGTCACAATTCAGC 60.238 42.308 0.00 0.00 0.00 4.26
2008 2309 3.084786 GGCTACTTCAACAGCTGGAAAT 58.915 45.455 19.93 5.28 37.91 2.17
2032 2333 0.401395 TGGAGAGTGAACCCCCAGTT 60.401 55.000 0.00 0.00 43.07 3.16
2179 2480 5.503002 ACATCATCATCAATCACTTCCACA 58.497 37.500 0.00 0.00 0.00 4.17
2239 2540 7.989741 ACATAGATCAGAACCAAACATAAGGAG 59.010 37.037 0.00 0.00 0.00 3.69
2315 2617 8.739039 TGAAAAACAATATCATCAGGTACTTGG 58.261 33.333 5.01 0.00 34.60 3.61
2342 2644 0.390998 GCCTTGCCTGAGACAGAGAC 60.391 60.000 0.00 0.00 32.44 3.36
2350 2652 1.572085 CGACTGTTGCCTTGCCTGAG 61.572 60.000 0.00 0.00 0.00 3.35
2542 2844 4.284234 ACAGGCCATAAACAAAAGCTTCAT 59.716 37.500 5.01 0.00 0.00 2.57
2609 2911 2.029244 CGGACACTATTTTGCACGCTAG 59.971 50.000 0.00 0.00 0.00 3.42
2897 3199 0.751643 GCGGAATGGCCACCAAGTAT 60.752 55.000 8.16 0.00 36.95 2.12
2914 3216 2.179018 CTTTCAACGGGCATGGCG 59.821 61.111 13.76 11.05 0.00 5.69
2980 3287 6.441088 CCTCTAGGAGGCCAAAGTAATATT 57.559 41.667 5.01 0.00 43.29 1.28
3018 3325 6.101005 TGTCCATATTAACCTGTCCATGATCA 59.899 38.462 0.00 0.00 0.00 2.92
3073 3380 8.378172 TGTGCTCTAATGGTAATATTAACTGC 57.622 34.615 11.71 7.02 0.00 4.40
3086 3393 5.276461 TGTATACCACTGTGCTCTAATGG 57.724 43.478 1.29 0.00 36.46 3.16
3223 3550 2.677902 CGATAGCAAGGGCAAGAACTCA 60.678 50.000 0.00 0.00 44.61 3.41
3351 3688 9.777297 AAATACATGAAAAGCAAATGGTTAAGT 57.223 25.926 0.00 0.00 35.00 2.24
3400 3764 8.520351 GGCAACCATAAAACACTTAATCTTACT 58.480 33.333 0.00 0.00 0.00 2.24
3534 3898 5.869344 GGGATACAAGCCAAAAAGATGTTTC 59.131 40.000 0.00 0.00 39.74 2.78
3616 3980 0.755327 ACAGAACAAACCACCAGCCC 60.755 55.000 0.00 0.00 0.00 5.19
3750 4114 3.360249 AACAGAACTTTCATGCAGCAC 57.640 42.857 0.00 0.00 0.00 4.40
4013 4385 1.000938 CCTGGAACAAAAGCAGCAGAC 60.001 52.381 0.00 0.00 38.70 3.51
4183 4555 2.407361 GTCACGGTGTTGATGAAGTACG 59.593 50.000 8.17 0.00 0.00 3.67
4268 4642 0.764890 TTCACAGGTTCAGGGACAGG 59.235 55.000 0.00 0.00 0.00 4.00
4435 4809 2.283145 AGTTGCTCATGGTCAGCTTT 57.717 45.000 6.46 0.00 37.79 3.51
4779 6407 5.137551 ACCTAAACAAGCAGGAAAAAGCTA 58.862 37.500 0.00 0.00 40.90 3.32
4781 6409 4.322080 ACCTAAACAAGCAGGAAAAAGC 57.678 40.909 0.00 0.00 35.76 3.51
4898 6568 1.598701 GGGATGAGGCCAGCAACAAC 61.599 60.000 5.01 0.00 0.00 3.32
4927 6597 0.465460 TCGAGCCCAGCAACAACTTT 60.465 50.000 0.00 0.00 0.00 2.66
5012 6685 4.750952 TTTTCCGAACATTCATGCGTTA 57.249 36.364 0.00 0.00 0.00 3.18
5035 6708 4.352595 TCCCAGTGTTTCTTCCCATTCTTA 59.647 41.667 0.00 0.00 0.00 2.10
5204 7599 6.806739 GCAAAAGCTTAATTTGTCCGTAATCT 59.193 34.615 0.00 0.00 39.42 2.40
5217 7612 8.783093 GTTTTTATTTCCTGGCAAAAGCTTAAT 58.217 29.630 0.00 0.00 0.00 1.40
5259 7654 5.362263 GTTCCGCCACTATTATAGTTTGGA 58.638 41.667 11.61 11.25 36.76 3.53
5268 7663 0.179094 CGCTGGTTCCGCCACTATTA 60.179 55.000 0.00 0.00 43.61 0.98
5318 7714 2.172679 TGTACGCTGTCCCATGACTAA 58.827 47.619 0.00 0.00 42.28 2.24
5321 7717 2.470821 GTATGTACGCTGTCCCATGAC 58.529 52.381 0.00 0.00 42.12 3.06
5381 7777 9.190317 GGAATGGAAGGAGTAGAATGTATTTTT 57.810 33.333 0.00 0.00 0.00 1.94
5382 7778 8.336235 TGGAATGGAAGGAGTAGAATGTATTTT 58.664 33.333 0.00 0.00 0.00 1.82
5383 7779 7.872138 TGGAATGGAAGGAGTAGAATGTATTT 58.128 34.615 0.00 0.00 0.00 1.40
5384 7780 7.451731 TGGAATGGAAGGAGTAGAATGTATT 57.548 36.000 0.00 0.00 0.00 1.89
5385 7781 7.639062 ATGGAATGGAAGGAGTAGAATGTAT 57.361 36.000 0.00 0.00 0.00 2.29
5386 7782 8.561536 TTATGGAATGGAAGGAGTAGAATGTA 57.438 34.615 0.00 0.00 0.00 2.29
5387 7783 5.983333 ATGGAATGGAAGGAGTAGAATGT 57.017 39.130 0.00 0.00 0.00 2.71
5388 7784 7.941238 ACATTATGGAATGGAAGGAGTAGAATG 59.059 37.037 0.00 0.00 45.83 2.67
5389 7785 8.050316 ACATTATGGAATGGAAGGAGTAGAAT 57.950 34.615 0.00 0.00 45.83 2.40
5390 7786 7.451731 ACATTATGGAATGGAAGGAGTAGAA 57.548 36.000 0.00 0.00 45.83 2.10
5391 7787 8.561536 TTACATTATGGAATGGAAGGAGTAGA 57.438 34.615 0.00 0.00 45.83 2.59
5392 7788 9.627123 TTTTACATTATGGAATGGAAGGAGTAG 57.373 33.333 0.00 0.00 44.88 2.57
5393 7789 9.403583 GTTTTACATTATGGAATGGAAGGAGTA 57.596 33.333 0.00 0.00 44.88 2.59
5394 7790 7.067008 CGTTTTACATTATGGAATGGAAGGAGT 59.933 37.037 0.00 0.00 44.88 3.85
5395 7791 7.417612 CGTTTTACATTATGGAATGGAAGGAG 58.582 38.462 0.00 0.00 44.88 3.69
5396 7792 6.183360 GCGTTTTACATTATGGAATGGAAGGA 60.183 38.462 0.00 0.00 44.88 3.36
5397 7793 5.977129 GCGTTTTACATTATGGAATGGAAGG 59.023 40.000 0.00 0.00 44.88 3.46
5398 7794 6.795399 AGCGTTTTACATTATGGAATGGAAG 58.205 36.000 0.00 0.00 44.88 3.46
5399 7795 6.767524 AGCGTTTTACATTATGGAATGGAA 57.232 33.333 0.00 0.00 45.83 3.53
5400 7796 6.767524 AAGCGTTTTACATTATGGAATGGA 57.232 33.333 0.00 0.00 45.83 3.41
5401 7797 7.826260 AAAAGCGTTTTACATTATGGAATGG 57.174 32.000 0.00 0.00 45.83 3.16
5402 7798 8.167985 CCAAAAAGCGTTTTACATTATGGAATG 58.832 33.333 10.06 0.00 40.40 2.67
5403 7799 7.148490 GCCAAAAAGCGTTTTACATTATGGAAT 60.148 33.333 10.06 0.00 35.12 3.01
5404 7800 6.146347 GCCAAAAAGCGTTTTACATTATGGAA 59.854 34.615 10.06 0.00 35.12 3.53
5405 7801 5.635700 GCCAAAAAGCGTTTTACATTATGGA 59.364 36.000 10.06 0.00 35.12 3.41
5406 7802 5.406780 TGCCAAAAAGCGTTTTACATTATGG 59.593 36.000 10.06 7.57 35.12 2.74
5407 7803 6.145371 AGTGCCAAAAAGCGTTTTACATTATG 59.855 34.615 10.06 0.00 35.12 1.90
5408 7804 6.220201 AGTGCCAAAAAGCGTTTTACATTAT 58.780 32.000 10.06 1.36 35.12 1.28
5409 7805 5.593010 AGTGCCAAAAAGCGTTTTACATTA 58.407 33.333 10.06 0.00 35.12 1.90
5410 7806 4.438148 AGTGCCAAAAAGCGTTTTACATT 58.562 34.783 10.06 6.22 35.12 2.71
5411 7807 4.053469 AGTGCCAAAAAGCGTTTTACAT 57.947 36.364 10.06 1.29 35.12 2.29
5412 7808 3.512033 AGTGCCAAAAAGCGTTTTACA 57.488 38.095 10.06 8.94 35.12 2.41
5413 7809 6.376177 AGTATAGTGCCAAAAAGCGTTTTAC 58.624 36.000 10.06 5.70 35.12 2.01
5414 7810 6.563222 AGTATAGTGCCAAAAAGCGTTTTA 57.437 33.333 10.06 0.00 35.12 1.52
5415 7811 5.447624 AGTATAGTGCCAAAAAGCGTTTT 57.552 34.783 4.41 4.41 37.43 2.43
5416 7812 5.935789 TCTAGTATAGTGCCAAAAAGCGTTT 59.064 36.000 0.00 0.00 40.38 3.60
5417 7813 5.484715 TCTAGTATAGTGCCAAAAAGCGTT 58.515 37.500 0.00 0.00 40.38 4.84
5418 7814 5.080969 TCTAGTATAGTGCCAAAAAGCGT 57.919 39.130 0.00 0.00 40.38 5.07
5419 7815 5.109903 ACTCTAGTATAGTGCCAAAAAGCG 58.890 41.667 0.00 0.00 40.38 4.68
5420 7816 8.488651 TTTACTCTAGTATAGTGCCAAAAAGC 57.511 34.615 0.00 0.00 40.38 3.51
5449 7845 8.732854 TCCCTCTATCCCATAATGTAAAATGTT 58.267 33.333 0.00 0.00 0.00 2.71
5451 7847 8.386264 ACTCCCTCTATCCCATAATGTAAAATG 58.614 37.037 0.00 0.00 0.00 2.32
5452 7848 8.525729 ACTCCCTCTATCCCATAATGTAAAAT 57.474 34.615 0.00 0.00 0.00 1.82
5456 7852 9.883293 CATATACTCCCTCTATCCCATAATGTA 57.117 37.037 0.00 0.00 0.00 2.29
5457 7853 8.355256 ACATATACTCCCTCTATCCCATAATGT 58.645 37.037 0.00 0.00 0.00 2.71
5460 7856 9.268282 GAAACATATACTCCCTCTATCCCATAA 57.732 37.037 0.00 0.00 0.00 1.90
5462 7858 7.491681 AGAAACATATACTCCCTCTATCCCAT 58.508 38.462 0.00 0.00 0.00 4.00
5464 7860 7.186268 AGAGAAACATATACTCCCTCTATCCC 58.814 42.308 0.00 0.00 0.00 3.85
5466 7862 9.403583 CCTAGAGAAACATATACTCCCTCTATC 57.596 40.741 0.00 0.00 33.14 2.08
5467 7863 9.129870 TCCTAGAGAAACATATACTCCCTCTAT 57.870 37.037 0.00 0.00 33.14 1.98
5468 7864 8.384718 GTCCTAGAGAAACATATACTCCCTCTA 58.615 40.741 0.00 0.00 32.52 2.43
5469 7865 7.235804 GTCCTAGAGAAACATATACTCCCTCT 58.764 42.308 0.00 0.00 34.38 3.69
5480 7876 1.135083 CACGCCGTCCTAGAGAAACAT 60.135 52.381 0.00 0.00 0.00 2.71
5481 7877 0.242825 CACGCCGTCCTAGAGAAACA 59.757 55.000 0.00 0.00 0.00 2.83
5482 7878 0.458025 CCACGCCGTCCTAGAGAAAC 60.458 60.000 0.00 0.00 0.00 2.78
5483 7879 0.896940 ACCACGCCGTCCTAGAGAAA 60.897 55.000 0.00 0.00 0.00 2.52
5484 7880 0.896940 AACCACGCCGTCCTAGAGAA 60.897 55.000 0.00 0.00 0.00 2.87
5486 7882 0.813184 TTAACCACGCCGTCCTAGAG 59.187 55.000 0.00 0.00 0.00 2.43
5488 7884 2.304751 ATTTAACCACGCCGTCCTAG 57.695 50.000 0.00 0.00 0.00 3.02
5489 7885 3.023119 TCTATTTAACCACGCCGTCCTA 58.977 45.455 0.00 0.00 0.00 2.94
5490 7886 1.826720 TCTATTTAACCACGCCGTCCT 59.173 47.619 0.00 0.00 0.00 3.85
5491 7887 2.298411 TCTATTTAACCACGCCGTCC 57.702 50.000 0.00 0.00 0.00 4.79
5493 7889 4.812626 CCTAAATCTATTTAACCACGCCGT 59.187 41.667 0.00 0.00 32.39 5.68
5494 7890 4.212636 CCCTAAATCTATTTAACCACGCCG 59.787 45.833 0.00 0.00 32.39 6.46
5495 7891 4.023450 GCCCTAAATCTATTTAACCACGCC 60.023 45.833 0.00 0.00 32.39 5.68
5496 7892 4.820173 AGCCCTAAATCTATTTAACCACGC 59.180 41.667 0.00 0.00 32.39 5.34
5497 7893 6.937436 AAGCCCTAAATCTATTTAACCACG 57.063 37.500 0.00 0.00 32.39 4.94
5512 7908 8.092687 CGTCTAGCCTATAAATTTAAGCCCTAA 58.907 37.037 1.21 0.00 0.00 2.69
5514 7910 6.269307 TCGTCTAGCCTATAAATTTAAGCCCT 59.731 38.462 1.21 0.40 0.00 5.19
5516 7912 7.009357 CGATCGTCTAGCCTATAAATTTAAGCC 59.991 40.741 7.03 0.00 0.00 4.35
5517 7913 7.009357 CCGATCGTCTAGCCTATAAATTTAAGC 59.991 40.741 15.09 6.12 0.00 3.09
5518 7914 7.488471 CCCGATCGTCTAGCCTATAAATTTAAG 59.512 40.741 15.09 1.89 0.00 1.85
5519 7915 7.318141 CCCGATCGTCTAGCCTATAAATTTAA 58.682 38.462 15.09 0.00 0.00 1.52
5520 7916 6.626623 GCCCGATCGTCTAGCCTATAAATTTA 60.627 42.308 15.09 0.00 0.00 1.40
5524 7920 2.490903 GCCCGATCGTCTAGCCTATAAA 59.509 50.000 15.09 0.00 0.00 1.40
5527 7923 0.251209 TGCCCGATCGTCTAGCCTAT 60.251 55.000 15.09 0.00 0.00 2.57
5528 7924 0.251209 ATGCCCGATCGTCTAGCCTA 60.251 55.000 15.09 0.00 0.00 3.93
5529 7925 1.115930 AATGCCCGATCGTCTAGCCT 61.116 55.000 15.09 1.78 0.00 4.58
5530 7926 0.249911 AAATGCCCGATCGTCTAGCC 60.250 55.000 15.09 0.00 0.00 3.93
5531 7927 0.861837 CAAATGCCCGATCGTCTAGC 59.138 55.000 15.09 11.56 0.00 3.42
5532 7928 0.861837 GCAAATGCCCGATCGTCTAG 59.138 55.000 15.09 0.00 34.31 2.43
5533 7929 2.986311 GCAAATGCCCGATCGTCTA 58.014 52.632 15.09 0.00 34.31 2.59
5534 7930 3.813596 GCAAATGCCCGATCGTCT 58.186 55.556 15.09 0.00 34.31 4.18
5545 7941 5.750067 GGTGTGCTAAATAATGAGGCAAATG 59.250 40.000 0.00 0.00 34.65 2.32
5546 7942 5.421693 TGGTGTGCTAAATAATGAGGCAAAT 59.578 36.000 0.00 0.00 34.65 2.32
5547 7943 4.769488 TGGTGTGCTAAATAATGAGGCAAA 59.231 37.500 0.00 0.00 34.65 3.68
5548 7944 4.339748 TGGTGTGCTAAATAATGAGGCAA 58.660 39.130 0.00 0.00 34.65 4.52
5549 7945 3.947196 CTGGTGTGCTAAATAATGAGGCA 59.053 43.478 0.00 0.00 0.00 4.75
5550 7946 3.947834 ACTGGTGTGCTAAATAATGAGGC 59.052 43.478 0.00 0.00 0.00 4.70
5552 7948 4.943705 ACCACTGGTGTGCTAAATAATGAG 59.056 41.667 0.00 0.00 42.54 2.90
5554 7950 6.942532 ATACCACTGGTGTGCTAAATAATG 57.057 37.500 11.32 0.00 42.54 1.90
5555 7951 9.284968 GAATATACCACTGGTGTGCTAAATAAT 57.715 33.333 11.32 0.00 42.54 1.28
5556 7952 8.491134 AGAATATACCACTGGTGTGCTAAATAA 58.509 33.333 11.32 0.00 42.54 1.40
5557 7953 8.029782 AGAATATACCACTGGTGTGCTAAATA 57.970 34.615 11.32 0.00 42.54 1.40
5558 7954 6.900194 AGAATATACCACTGGTGTGCTAAAT 58.100 36.000 11.32 0.00 42.54 1.40
5559 7955 6.308015 AGAATATACCACTGGTGTGCTAAA 57.692 37.500 11.32 0.00 42.54 1.85
5560 7956 5.950544 AGAATATACCACTGGTGTGCTAA 57.049 39.130 11.32 0.00 42.54 3.09
5562 7958 7.235606 ACATATAGAATATACCACTGGTGTGCT 59.764 37.037 11.32 6.53 42.54 4.40
5563 7959 7.386851 ACATATAGAATATACCACTGGTGTGC 58.613 38.462 11.32 0.00 42.54 4.57
5564 7960 9.778741 AAACATATAGAATATACCACTGGTGTG 57.221 33.333 11.32 0.00 43.45 3.82
5565 7961 9.998106 GAAACATATAGAATATACCACTGGTGT 57.002 33.333 11.32 6.85 36.19 4.16
5584 7980 9.490379 GAGAGGTTGTAAGAAAAGAGAAACATA 57.510 33.333 0.00 0.00 0.00 2.29
5586 7982 7.565680 AGAGAGGTTGTAAGAAAAGAGAAACA 58.434 34.615 0.00 0.00 0.00 2.83
5587 7983 9.713713 ATAGAGAGGTTGTAAGAAAAGAGAAAC 57.286 33.333 0.00 0.00 0.00 2.78
5601 7997 9.739276 TGAACATATTCAAAATAGAGAGGTTGT 57.261 29.630 0.00 0.00 41.99 3.32
5616 8012 7.523293 AGGTGTTGTGATTTGAACATATTCA 57.477 32.000 0.00 0.00 43.28 2.57
5624 8020 9.743057 CACTTAAATTAGGTGTTGTGATTTGAA 57.257 29.630 7.05 0.00 31.83 2.69
5625 8021 9.126151 TCACTTAAATTAGGTGTTGTGATTTGA 57.874 29.630 13.68 0.00 37.11 2.69
5626 8022 9.743057 TTCACTTAAATTAGGTGTTGTGATTTG 57.257 29.630 13.68 0.00 37.11 2.32
5673 8069 8.696374 CCAAATATCCTAGAAGACACTACAAGA 58.304 37.037 0.00 0.00 0.00 3.02
5674 8070 8.696374 TCCAAATATCCTAGAAGACACTACAAG 58.304 37.037 0.00 0.00 0.00 3.16
5675 8071 8.603898 TCCAAATATCCTAGAAGACACTACAA 57.396 34.615 0.00 0.00 0.00 2.41
5676 8072 8.642432 CATCCAAATATCCTAGAAGACACTACA 58.358 37.037 0.00 0.00 0.00 2.74
5677 8073 7.600752 GCATCCAAATATCCTAGAAGACACTAC 59.399 40.741 0.00 0.00 0.00 2.73
5679 8075 6.328672 AGCATCCAAATATCCTAGAAGACACT 59.671 38.462 0.00 0.00 0.00 3.55
5680 8076 6.529220 AGCATCCAAATATCCTAGAAGACAC 58.471 40.000 0.00 0.00 0.00 3.67
5681 8077 6.753913 AGCATCCAAATATCCTAGAAGACA 57.246 37.500 0.00 0.00 0.00 3.41
5696 8092 8.651389 AGTGTAGCTATCTAAATTAGCATCCAA 58.349 33.333 0.00 0.00 39.16 3.53
5697 8093 8.195165 AGTGTAGCTATCTAAATTAGCATCCA 57.805 34.615 0.00 0.00 39.16 3.41
5698 8094 9.145865 GAAGTGTAGCTATCTAAATTAGCATCC 57.854 37.037 0.00 0.00 39.16 3.51
5699 8095 9.921637 AGAAGTGTAGCTATCTAAATTAGCATC 57.078 33.333 0.00 0.00 39.16 3.91
5712 8108 8.150945 CCATGTTACCATTAGAAGTGTAGCTAT 58.849 37.037 0.00 0.00 0.00 2.97
5713 8109 7.497595 CCATGTTACCATTAGAAGTGTAGCTA 58.502 38.462 0.00 0.00 0.00 3.32
5714 8110 6.349300 CCATGTTACCATTAGAAGTGTAGCT 58.651 40.000 0.00 0.00 0.00 3.32
5718 8114 4.700213 GTGCCATGTTACCATTAGAAGTGT 59.300 41.667 0.00 0.00 0.00 3.55
5719 8115 4.096382 GGTGCCATGTTACCATTAGAAGTG 59.904 45.833 9.96 0.00 36.94 3.16
5720 8116 4.270008 GGTGCCATGTTACCATTAGAAGT 58.730 43.478 9.96 0.00 36.94 3.01
5722 8118 3.268334 AGGGTGCCATGTTACCATTAGAA 59.732 43.478 15.16 0.00 38.74 2.10
5724 8120 3.214328 GAGGGTGCCATGTTACCATTAG 58.786 50.000 15.16 0.00 38.74 1.73
5725 8121 2.092103 GGAGGGTGCCATGTTACCATTA 60.092 50.000 15.16 0.00 38.74 1.90
5727 8123 0.258774 GGAGGGTGCCATGTTACCAT 59.741 55.000 15.16 9.59 38.74 3.55
5728 8124 1.136961 TGGAGGGTGCCATGTTACCA 61.137 55.000 15.16 0.00 38.74 3.25
5729 8125 0.039035 TTGGAGGGTGCCATGTTACC 59.961 55.000 7.00 7.00 37.86 2.85
5730 8126 1.917872 TTTGGAGGGTGCCATGTTAC 58.082 50.000 0.00 0.00 37.86 2.50
5732 8128 2.456577 GTATTTGGAGGGTGCCATGTT 58.543 47.619 0.00 0.00 37.86 2.71
5733 8129 1.341976 GGTATTTGGAGGGTGCCATGT 60.342 52.381 0.00 0.00 37.86 3.21
5736 8132 1.694856 GGGTATTTGGAGGGTGCCA 59.305 57.895 0.00 0.00 35.78 4.92
5737 8133 1.453197 CGGGTATTTGGAGGGTGCC 60.453 63.158 0.00 0.00 0.00 5.01
5739 8135 0.322997 TTGCGGGTATTTGGAGGGTG 60.323 55.000 0.00 0.00 0.00 4.61
5740 8136 0.406361 TTTGCGGGTATTTGGAGGGT 59.594 50.000 0.00 0.00 0.00 4.34
5741 8137 3.274601 TTTGCGGGTATTTGGAGGG 57.725 52.632 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.