Multiple sequence alignment - TraesCS3D01G420300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G420300 chr3D 100.000 7794 0 0 1 7794 532695017 532687224 0.000000e+00 14393.0
1 TraesCS3D01G420300 chr3D 91.837 245 17 3 7551 7793 406944880 406945123 9.690000e-89 339.0
2 TraesCS3D01G420300 chr3D 91.429 245 20 1 7551 7794 330634344 330634588 1.250000e-87 335.0
3 TraesCS3D01G420300 chr3D 91.429 245 20 1 7551 7794 476660440 476660684 1.250000e-87 335.0
4 TraesCS3D01G420300 chr3D 77.673 318 64 5 273 584 548729661 548729345 3.710000e-43 187.0
5 TraesCS3D01G420300 chr3D 76.471 306 58 9 392 692 504288993 504289289 3.770000e-33 154.0
6 TraesCS3D01G420300 chr3D 75.072 345 77 8 353 692 522296234 522295894 1.350000e-32 152.0
7 TraesCS3D01G420300 chr3B 94.841 5582 206 22 1852 7382 704711660 704706110 0.000000e+00 8637.0
8 TraesCS3D01G420300 chr3B 84.343 1584 179 29 11 1558 704713584 704712034 0.000000e+00 1487.0
9 TraesCS3D01G420300 chr3B 89.051 274 11 9 1599 1855 704712039 704711768 9.760000e-84 322.0
10 TraesCS3D01G420300 chr3B 92.308 65 4 1 3829 3892 704709430 704709366 2.990000e-14 91.6
11 TraesCS3D01G420300 chr3B 90.769 65 5 1 4076 4140 704709677 704709614 1.390000e-12 86.1
12 TraesCS3D01G420300 chr3B 95.556 45 1 1 3995 4038 704709313 704709357 3.900000e-08 71.3
13 TraesCS3D01G420300 chr3A 97.171 4348 108 6 1852 6199 667798410 667794078 0.000000e+00 7334.0
14 TraesCS3D01G420300 chr3A 97.321 1232 30 2 6179 7409 667794067 667792838 0.000000e+00 2089.0
15 TraesCS3D01G420300 chr3A 92.874 1235 55 15 639 1855 667799737 667798518 0.000000e+00 1762.0
16 TraesCS3D01G420300 chr3A 83.994 631 89 8 6 634 667800632 667800012 5.210000e-166 595.0
17 TraesCS3D01G420300 chr3A 85.882 170 20 3 5297 5463 184660497 184660665 2.230000e-40 178.0
18 TraesCS3D01G420300 chr3A 95.556 45 1 1 3995 4038 667796074 667796118 3.900000e-08 71.3
19 TraesCS3D01G420300 chr1D 89.250 400 37 5 3627 4024 480583552 480583947 5.430000e-136 496.0
20 TraesCS3D01G420300 chr1D 91.498 247 18 2 7551 7794 215025957 215026203 3.480000e-88 337.0
21 TraesCS3D01G420300 chr1D 90.179 112 9 1 7448 7559 466492073 466492182 2.270000e-30 145.0
22 TraesCS3D01G420300 chr6D 91.837 245 19 1 7551 7794 210673872 210674116 2.690000e-89 340.0
23 TraesCS3D01G420300 chr6D 76.923 208 46 2 6 212 461425112 461425318 4.940000e-22 117.0
24 TraesCS3D01G420300 chr5D 91.837 245 19 1 7551 7794 297586972 297587216 2.690000e-89 340.0
25 TraesCS3D01G420300 chr5D 77.632 304 62 6 392 692 388049936 388049636 6.210000e-41 180.0
26 TraesCS3D01G420300 chr5D 93.269 104 7 0 7447 7550 476824672 476824775 3.770000e-33 154.0
27 TraesCS3D01G420300 chr5D 91.589 107 9 0 7446 7552 549737798 549737692 1.750000e-31 148.0
28 TraesCS3D01G420300 chr4D 91.837 245 19 1 7551 7794 486358542 486358786 2.690000e-89 340.0
29 TraesCS3D01G420300 chr2B 91.770 243 18 2 7551 7792 413424836 413424595 3.480000e-88 337.0
30 TraesCS3D01G420300 chr2B 73.409 707 155 26 1 692 514995134 514994446 4.700000e-57 233.0
31 TraesCS3D01G420300 chr2B 79.630 270 49 5 412 679 27706392 27706657 1.030000e-43 189.0
32 TraesCS3D01G420300 chr1B 82.051 351 53 6 7446 7793 322683639 322683982 2.750000e-74 291.0
33 TraesCS3D01G420300 chr7D 75.604 455 95 14 233 679 29721270 29721716 2.200000e-50 211.0
34 TraesCS3D01G420300 chr7B 78.592 341 54 14 7462 7793 33470967 33470637 2.850000e-49 207.0
35 TraesCS3D01G420300 chr7B 74.376 441 84 23 235 665 706246743 706247164 2.250000e-35 161.0
36 TraesCS3D01G420300 chr5A 88.235 170 16 3 5297 5463 502611579 502611747 4.770000e-47 200.0
37 TraesCS3D01G420300 chr5A 76.687 326 55 14 7446 7764 20594557 20594246 2.250000e-35 161.0
38 TraesCS3D01G420300 chr2D 78.502 307 62 3 353 655 593354263 593354569 1.720000e-46 198.0
39 TraesCS3D01G420300 chr2D 92.523 107 8 0 7446 7552 623014092 623013986 3.770000e-33 154.0
40 TraesCS3D01G420300 chr2D 91.429 105 9 0 7446 7550 273333175 273333071 2.270000e-30 145.0
41 TraesCS3D01G420300 chr2D 83.333 114 17 2 6 118 43800722 43800610 3.850000e-18 104.0
42 TraesCS3D01G420300 chr1A 92.308 104 7 1 7447 7550 560055619 560055721 6.300000e-31 147.0
43 TraesCS3D01G420300 chr2A 77.593 241 52 2 414 653 73186135 73185896 2.270000e-30 145.0
44 TraesCS3D01G420300 chr4A 74.486 243 58 4 6 247 73541001 73540762 1.380000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G420300 chr3D 532687224 532695017 7793 True 14393.00 14393 100.0000 1 7794 1 chr3D.!!$R2 7793
1 TraesCS3D01G420300 chr3B 704706110 704713584 7474 True 2124.74 8637 90.2624 11 7382 5 chr3B.!!$R1 7371
2 TraesCS3D01G420300 chr3A 667792838 667800632 7794 True 2945.00 7334 92.8400 6 7409 4 chr3A.!!$R1 7403
3 TraesCS3D01G420300 chr2B 514994446 514995134 688 True 233.00 233 73.4090 1 692 1 chr2B.!!$R2 691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
771 1070 0.106669 ATTTCTTTCCTAGGCGGCCC 60.107 55.000 17.02 0.0 0.00 5.80 F
1878 2334 0.385390 AAGTTGGCTTGCACTTTCCG 59.615 50.000 0.00 0.0 32.92 4.30 F
2595 3054 1.875157 GCAGGTAAACCGAACCGAACT 60.875 52.381 0.00 0.0 42.15 3.01 F
3808 4275 2.042831 GCGCTGTCAAGGCCTGATT 61.043 57.895 5.69 0.0 36.14 2.57 F
5294 5768 0.250553 AGAATCCGGCCAACGTTCAA 60.251 50.000 2.24 0.0 42.24 2.69 F
5400 5874 1.136147 CGTGCCAGCAAGAAGATGC 59.864 57.895 0.00 0.0 46.78 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2245 2704 1.440938 CGCCCTCGTCGAGATCTTCT 61.441 60.000 23.74 0.0 0.00 2.85 R
2758 3224 1.583495 CGTAGCTCCAGTCCACGTCA 61.583 60.000 0.00 0.0 0.00 4.35 R
4090 4558 0.531657 TCAATGGGCAGCATTTTCCG 59.468 50.000 0.00 0.0 0.00 4.30 R
5678 6152 1.062121 AGCTTCCCTATGGTCTGCCTA 60.062 52.381 0.00 0.0 35.27 3.93 R
6552 7085 0.464373 TCGGCATCATCAAGCTTCCC 60.464 55.000 0.00 0.0 0.00 3.97 R
6942 7484 2.604046 ATAAGAGCACGTGATGGACC 57.396 50.000 22.23 0.0 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 2.729862 CGATCCGTCGCGAATCCC 60.730 66.667 12.06 0.00 41.49 3.85
89 90 1.219664 CCTCGCGTCCACCCAAATA 59.780 57.895 5.77 0.00 0.00 1.40
90 91 0.179056 CCTCGCGTCCACCCAAATAT 60.179 55.000 5.77 0.00 0.00 1.28
92 93 2.484065 CCTCGCGTCCACCCAAATATTA 60.484 50.000 5.77 0.00 0.00 0.98
94 95 2.168936 TCGCGTCCACCCAAATATTACT 59.831 45.455 5.77 0.00 0.00 2.24
102 103 5.435041 TCCACCCAAATATTACTTGGATCCT 59.565 40.000 14.23 0.00 45.31 3.24
130 131 1.115467 CAGATCGCCACTTCCTAGGT 58.885 55.000 9.08 0.00 0.00 3.08
142 143 0.116342 TCCTAGGTGGAGAAGGTGCA 59.884 55.000 9.08 0.00 40.56 4.57
215 216 2.583593 GACGACGAGGCCATCTGC 60.584 66.667 5.01 0.00 40.16 4.26
300 301 1.667830 GCAGTACTTGCGGCAGACA 60.668 57.895 1.67 0.00 44.09 3.41
312 313 3.147595 CAGACATCGGGGAGGCGA 61.148 66.667 0.00 0.00 0.00 5.54
317 318 2.363795 ATCGGGGAGGCGAAGTCA 60.364 61.111 0.00 0.00 0.00 3.41
342 343 3.362399 CTGGCGCCTCGAGTGATGT 62.362 63.158 29.70 0.00 0.00 3.06
410 418 3.785486 GACCATGACAGATTCATCGTCA 58.215 45.455 13.27 13.27 46.62 4.35
430 438 2.499098 CTCACGTCGACCGACACG 60.499 66.667 20.43 11.72 44.77 4.49
477 485 0.755698 GAGTAGGGCATGGGAGACGA 60.756 60.000 0.00 0.00 0.00 4.20
523 531 5.511234 GGTACGTGTCACATATCCTACTT 57.489 43.478 0.00 0.00 0.00 2.24
529 537 5.977725 CGTGTCACATATCCTACTTTACCTG 59.022 44.000 3.42 0.00 0.00 4.00
534 542 5.070446 CACATATCCTACTTTACCTGGCTGA 59.930 44.000 0.00 0.00 0.00 4.26
535 543 5.070580 ACATATCCTACTTTACCTGGCTGAC 59.929 44.000 0.00 0.00 0.00 3.51
549 557 1.079819 CTGACGACCGGAGCAACAT 60.080 57.895 9.46 0.00 0.00 2.71
556 564 2.151202 GACCGGAGCAACATTTTGAGA 58.849 47.619 9.46 0.00 34.24 3.27
586 594 2.654289 CACCGGACATGGACACGA 59.346 61.111 9.46 0.00 0.00 4.35
602 610 2.586357 GATGAAGCCGGACGAGCC 60.586 66.667 5.05 0.00 0.00 4.70
631 639 1.000717 ACTGGGTTTTACGTTGCATGC 60.001 47.619 11.82 11.82 0.00 4.06
643 921 2.250188 GTTGCATGCAATTGTACGGAC 58.750 47.619 33.94 16.23 38.28 4.79
693 974 6.426328 CAGTTGTGAAAGAGATTACTTGAGCT 59.574 38.462 0.00 0.00 0.00 4.09
702 983 3.939592 AGATTACTTGAGCTTTAACGGGC 59.060 43.478 0.00 0.00 0.00 6.13
703 984 1.717194 TACTTGAGCTTTAACGGGCG 58.283 50.000 0.00 0.00 0.00 6.13
737 1018 3.164268 CATTTGAGGGGGTTGAATGTGA 58.836 45.455 0.00 0.00 0.00 3.58
738 1019 3.320610 TTTGAGGGGGTTGAATGTGAA 57.679 42.857 0.00 0.00 0.00 3.18
739 1020 3.541242 TTGAGGGGGTTGAATGTGAAT 57.459 42.857 0.00 0.00 0.00 2.57
741 1022 3.164268 TGAGGGGGTTGAATGTGAATTG 58.836 45.455 0.00 0.00 0.00 2.32
743 1024 2.899256 AGGGGGTTGAATGTGAATTGTG 59.101 45.455 0.00 0.00 0.00 3.33
744 1025 2.896685 GGGGGTTGAATGTGAATTGTGA 59.103 45.455 0.00 0.00 0.00 3.58
745 1026 3.515104 GGGGGTTGAATGTGAATTGTGAT 59.485 43.478 0.00 0.00 0.00 3.06
746 1027 4.497300 GGGGTTGAATGTGAATTGTGATG 58.503 43.478 0.00 0.00 0.00 3.07
747 1028 4.021192 GGGGTTGAATGTGAATTGTGATGT 60.021 41.667 0.00 0.00 0.00 3.06
748 1029 5.184864 GGGGTTGAATGTGAATTGTGATGTA 59.815 40.000 0.00 0.00 0.00 2.29
752 1033 8.511321 GGTTGAATGTGAATTGTGATGTACTAA 58.489 33.333 0.00 0.00 0.00 2.24
769 1068 3.542648 ACTAATTTCTTTCCTAGGCGGC 58.457 45.455 2.96 0.00 0.00 6.53
771 1070 0.106669 ATTTCTTTCCTAGGCGGCCC 60.107 55.000 17.02 0.00 0.00 5.80
832 1132 4.971008 TCTCGAGAGAAACGAACATGTAG 58.029 43.478 12.08 0.00 41.32 2.74
840 1140 3.489180 AACGAACATGTAGACTCTCCG 57.511 47.619 0.00 0.00 0.00 4.63
1058 1377 0.468226 TCTCTCCCTCTCTCTCTCGC 59.532 60.000 0.00 0.00 0.00 5.03
1072 1391 4.629523 TCGCCCCCAACGGAACAC 62.630 66.667 0.00 0.00 0.00 3.32
1141 1460 4.442706 CAACGAGTGGATTAATGGCTACT 58.557 43.478 0.00 0.00 0.00 2.57
1149 1468 3.181439 GGATTAATGGCTACTTGGAGGCT 60.181 47.826 7.91 0.00 42.38 4.58
1284 1612 1.364721 CGCACACGATATTCAACCCA 58.635 50.000 0.00 0.00 43.93 4.51
1359 1687 1.802880 CGGACATGGATCAAGGTCGTC 60.803 57.143 8.73 0.00 0.00 4.20
1454 1782 0.969409 AAGAAGCAGGCAAGCCATCC 60.969 55.000 14.40 0.78 38.92 3.51
1455 1783 1.379576 GAAGCAGGCAAGCCATCCT 60.380 57.895 14.40 3.22 38.92 3.24
1495 1823 2.420372 TCTCTTCTTGATCGTCTCGTGG 59.580 50.000 0.00 0.00 0.00 4.94
1499 1827 0.523546 CTTGATCGTCTCGTGGTCGG 60.524 60.000 0.00 0.00 37.69 4.79
1647 1975 8.893219 TCTGCATGAGTCGATCTATTATTTTT 57.107 30.769 0.00 0.00 0.00 1.94
1682 2011 6.870439 TGATGATGAAAGTGATCGATGTATCC 59.130 38.462 0.54 0.00 0.00 2.59
1878 2334 0.385390 AAGTTGGCTTGCACTTTCCG 59.615 50.000 0.00 0.00 32.92 4.30
2245 2704 3.311110 GCCACGGAGGACCTGTCA 61.311 66.667 0.00 0.00 41.22 3.58
2404 2863 2.200067 GTGCTCATCAGGTCTCATTCG 58.800 52.381 0.00 0.00 0.00 3.34
2416 2875 4.039973 AGGTCTCATTCGTAAACCTCACAA 59.960 41.667 0.00 0.00 35.42 3.33
2595 3054 1.875157 GCAGGTAAACCGAACCGAACT 60.875 52.381 0.00 0.00 42.15 3.01
2658 3124 3.891977 TGACTTATGGCGAGCTATTCTCT 59.108 43.478 0.00 0.00 39.70 3.10
2758 3224 4.003788 CGCCAAGTGTCGTCCCCT 62.004 66.667 0.00 0.00 0.00 4.79
2788 3254 3.718210 GAGCTACGGGGAGCCAACG 62.718 68.421 0.00 0.00 43.97 4.10
3160 3626 2.632028 CATGTCCAAGGAGGAGATCGAT 59.368 50.000 0.00 0.00 46.95 3.59
3464 3931 2.142356 TTTGAGGTGGCATATGTGGG 57.858 50.000 4.29 0.00 0.00 4.61
3680 4147 7.649306 GTCTGGTTCCAAATTTCATATGCATAC 59.351 37.037 8.99 0.00 0.00 2.39
3808 4275 2.042831 GCGCTGTCAAGGCCTGATT 61.043 57.895 5.69 0.00 36.14 2.57
3834 4301 6.088749 CGAAGAAGAACATCACTACTCTTGTG 59.911 42.308 0.00 0.00 36.82 3.33
4090 4558 9.500864 GTTTCTGAATATCTTCTCAAAGCATTC 57.499 33.333 0.00 0.00 35.89 2.67
4205 4673 2.797177 AGGAACTGGATGAAAGGAGC 57.203 50.000 0.00 0.00 37.18 4.70
4485 4953 5.612725 ATTCAGTTGTTCCACCATGTTTT 57.387 34.783 0.00 0.00 0.00 2.43
4507 4975 8.671921 GTTTTAGATTCAGCATCTCATTCTGAA 58.328 33.333 6.40 6.40 46.72 3.02
4520 4988 6.449698 TCTCATTCTGAAGAAAAACATTGGC 58.550 36.000 0.00 0.00 37.61 4.52
4530 4998 3.473113 AAAACATTGGCTATCCCCTGT 57.527 42.857 0.00 0.00 31.78 4.00
4638 5112 4.019411 TGTCAATCACCTGATGCTTTCCTA 60.019 41.667 0.00 0.00 34.49 2.94
4689 5163 9.256477 CATAACTTTATACTGGCAATCTTACGA 57.744 33.333 0.00 0.00 0.00 3.43
4806 5280 5.790012 ACATCCTGTGTTGCAAATTTTGCG 61.790 41.667 24.67 12.04 46.30 4.85
5000 5474 1.204704 CGCAACATCCACCTCTACTCA 59.795 52.381 0.00 0.00 0.00 3.41
5252 5726 1.374758 CCACCAGTCGTCTTCTGCC 60.375 63.158 0.00 0.00 0.00 4.85
5294 5768 0.250553 AGAATCCGGCCAACGTTCAA 60.251 50.000 2.24 0.00 42.24 2.69
5400 5874 1.136147 CGTGCCAGCAAGAAGATGC 59.864 57.895 0.00 0.00 46.78 3.91
5742 6216 1.897137 AGTGTCGTCGAGCCTGACA 60.897 57.895 0.00 5.82 40.12 3.58
5823 6297 5.558818 AGGCTCCTGCATATCTTTATCTTG 58.441 41.667 0.00 0.00 41.91 3.02
5878 6352 7.479980 ACCATTGGTATATGAACGTGAATTTG 58.520 34.615 6.54 0.00 32.11 2.32
6932 7474 5.880332 TGAGTGCAAAAGCTAAATACCCTAG 59.120 40.000 0.00 0.00 0.00 3.02
7206 7748 3.208594 TGATGGGAAAAGCTCATGATCG 58.791 45.455 0.00 0.00 37.99 3.69
7276 7818 3.940209 TGCCAAATGAAAGTCATGTCC 57.060 42.857 0.00 0.00 37.15 4.02
7335 7877 8.956426 GTTGTAATTCCTCAATTTGTCAGGATA 58.044 33.333 7.46 0.00 36.18 2.59
7385 7927 6.819397 ACTCTTAAGTTGCCTACAATTTCC 57.181 37.500 1.63 0.00 37.04 3.13
7409 7951 7.073725 TCCTTAGATATAAGCCACCTTTCCAAT 59.926 37.037 1.36 0.00 32.47 3.16
7410 7952 7.725844 CCTTAGATATAAGCCACCTTTCCAATT 59.274 37.037 1.36 0.00 32.47 2.32
7411 7953 8.691661 TTAGATATAAGCCACCTTTCCAATTC 57.308 34.615 0.00 0.00 32.47 2.17
7412 7954 6.071320 AGATATAAGCCACCTTTCCAATTCC 58.929 40.000 0.00 0.00 32.47 3.01
7413 7955 1.644509 AAGCCACCTTTCCAATTCCC 58.355 50.000 0.00 0.00 0.00 3.97
7414 7956 0.611896 AGCCACCTTTCCAATTCCCG 60.612 55.000 0.00 0.00 0.00 5.14
7415 7957 1.890174 CCACCTTTCCAATTCCCGC 59.110 57.895 0.00 0.00 0.00 6.13
7416 7958 0.897863 CCACCTTTCCAATTCCCGCA 60.898 55.000 0.00 0.00 0.00 5.69
7417 7959 0.965439 CACCTTTCCAATTCCCGCAA 59.035 50.000 0.00 0.00 0.00 4.85
7418 7960 1.342819 CACCTTTCCAATTCCCGCAAA 59.657 47.619 0.00 0.00 0.00 3.68
7419 7961 2.043227 ACCTTTCCAATTCCCGCAAAA 58.957 42.857 0.00 0.00 0.00 2.44
7420 7962 2.436173 ACCTTTCCAATTCCCGCAAAAA 59.564 40.909 0.00 0.00 0.00 1.94
7440 7982 3.819564 AAAAAGCCACCTTTCCAAGAC 57.180 42.857 0.00 0.00 40.30 3.01
7441 7983 2.755952 AAAGCCACCTTTCCAAGACT 57.244 45.000 0.00 0.00 36.59 3.24
7442 7984 2.755952 AAGCCACCTTTCCAAGACTT 57.244 45.000 0.00 0.00 0.00 3.01
7443 7985 2.278332 AGCCACCTTTCCAAGACTTC 57.722 50.000 0.00 0.00 0.00 3.01
7444 7986 0.875059 GCCACCTTTCCAAGACTTCG 59.125 55.000 0.00 0.00 0.00 3.79
7445 7987 1.523758 CCACCTTTCCAAGACTTCGG 58.476 55.000 0.00 0.00 0.00 4.30
7446 7988 0.875059 CACCTTTCCAAGACTTCGGC 59.125 55.000 0.00 0.00 0.00 5.54
7447 7989 0.602905 ACCTTTCCAAGACTTCGGCG 60.603 55.000 0.00 0.00 0.00 6.46
7448 7990 1.497722 CTTTCCAAGACTTCGGCGC 59.502 57.895 0.00 0.00 0.00 6.53
7449 7991 0.951040 CTTTCCAAGACTTCGGCGCT 60.951 55.000 7.64 0.00 0.00 5.92
7450 7992 0.319083 TTTCCAAGACTTCGGCGCTA 59.681 50.000 7.64 0.00 0.00 4.26
7451 7993 0.389426 TTCCAAGACTTCGGCGCTAC 60.389 55.000 7.64 0.00 0.00 3.58
7452 7994 1.215647 CCAAGACTTCGGCGCTACT 59.784 57.895 7.64 0.00 0.00 2.57
7453 7995 0.802607 CCAAGACTTCGGCGCTACTC 60.803 60.000 7.64 0.00 0.00 2.59
7454 7996 0.802607 CAAGACTTCGGCGCTACTCC 60.803 60.000 7.64 0.00 0.00 3.85
7455 7997 0.966370 AAGACTTCGGCGCTACTCCT 60.966 55.000 7.64 0.00 0.00 3.69
7456 7998 0.107312 AGACTTCGGCGCTACTCCTA 60.107 55.000 7.64 0.00 0.00 2.94
7457 7999 0.029167 GACTTCGGCGCTACTCCTAC 59.971 60.000 7.64 0.00 0.00 3.18
7458 8000 0.679002 ACTTCGGCGCTACTCCTACA 60.679 55.000 7.64 0.00 0.00 2.74
7459 8001 0.454600 CTTCGGCGCTACTCCTACAA 59.545 55.000 7.64 0.00 0.00 2.41
7460 8002 0.454600 TTCGGCGCTACTCCTACAAG 59.545 55.000 7.64 0.00 0.00 3.16
7461 8003 0.679002 TCGGCGCTACTCCTACAAGT 60.679 55.000 7.64 0.00 0.00 3.16
7462 8004 0.172803 CGGCGCTACTCCTACAAGTT 59.827 55.000 7.64 0.00 0.00 2.66
7463 8005 1.402968 CGGCGCTACTCCTACAAGTTA 59.597 52.381 7.64 0.00 0.00 2.24
7464 8006 2.541178 CGGCGCTACTCCTACAAGTTAG 60.541 54.545 7.64 0.00 0.00 2.34
7465 8007 2.461903 GCGCTACTCCTACAAGTTAGC 58.538 52.381 0.00 0.00 0.00 3.09
7466 8008 2.099427 GCGCTACTCCTACAAGTTAGCT 59.901 50.000 0.00 0.00 0.00 3.32
7467 8009 3.696898 CGCTACTCCTACAAGTTAGCTG 58.303 50.000 0.00 0.00 0.00 4.24
7468 8010 3.128938 CGCTACTCCTACAAGTTAGCTGT 59.871 47.826 0.00 0.00 0.00 4.40
7469 8011 4.334759 CGCTACTCCTACAAGTTAGCTGTA 59.665 45.833 0.00 0.00 0.00 2.74
7470 8012 5.504337 CGCTACTCCTACAAGTTAGCTGTAG 60.504 48.000 0.00 0.00 36.29 2.74
7471 8013 4.722361 ACTCCTACAAGTTAGCTGTAGC 57.278 45.455 0.00 0.00 42.49 3.58
7481 8023 2.956964 GCTGTAGCGCCGTAGCAG 60.957 66.667 18.75 13.82 39.83 4.24
7482 8024 2.490217 CTGTAGCGCCGTAGCAGT 59.510 61.111 2.29 0.00 39.83 4.40
7483 8025 1.725665 CTGTAGCGCCGTAGCAGTA 59.274 57.895 2.29 0.00 39.83 2.74
7484 8026 0.317103 CTGTAGCGCCGTAGCAGTAG 60.317 60.000 2.29 0.00 39.83 2.57
7485 8027 1.657794 GTAGCGCCGTAGCAGTAGC 60.658 63.158 2.29 0.00 39.83 3.58
7495 8037 2.202892 GCAGTAGCGTAGGCACCC 60.203 66.667 10.48 0.00 43.41 4.61
7496 8038 2.104331 CAGTAGCGTAGGCACCCG 59.896 66.667 10.48 0.00 43.41 5.28
7503 8045 3.834799 GTAGGCACCCGCGCTACT 61.835 66.667 5.56 0.00 38.16 2.57
7504 8046 2.124193 TAGGCACCCGCGCTACTA 60.124 61.111 5.56 0.00 39.92 1.82
7505 8047 2.484062 TAGGCACCCGCGCTACTAC 61.484 63.158 5.56 0.00 39.92 2.73
7506 8048 2.898920 TAGGCACCCGCGCTACTACT 62.899 60.000 5.56 0.00 39.92 2.57
7507 8049 2.484062 GGCACCCGCGCTACTACTA 61.484 63.158 5.56 0.00 39.92 1.82
7508 8050 1.008767 GCACCCGCGCTACTACTAG 60.009 63.158 5.56 0.00 0.00 2.57
7509 8051 1.722636 GCACCCGCGCTACTACTAGT 61.723 60.000 5.56 0.00 0.00 2.57
7510 8052 0.737219 CACCCGCGCTACTACTAGTT 59.263 55.000 5.56 0.00 0.00 2.24
7511 8053 0.737219 ACCCGCGCTACTACTAGTTG 59.263 55.000 5.56 0.59 0.00 3.16
7512 8054 0.737219 CCCGCGCTACTACTAGTTGT 59.263 55.000 14.36 14.36 0.00 3.32
7513 8055 1.133790 CCCGCGCTACTACTAGTTGTT 59.866 52.381 15.11 0.67 0.00 2.83
7514 8056 2.416431 CCCGCGCTACTACTAGTTGTTT 60.416 50.000 15.11 0.00 0.00 2.83
7515 8057 3.181497 CCCGCGCTACTACTAGTTGTTTA 60.181 47.826 15.11 0.00 0.00 2.01
7516 8058 4.414852 CCGCGCTACTACTAGTTGTTTAA 58.585 43.478 15.11 0.00 0.00 1.52
7517 8059 4.263911 CCGCGCTACTACTAGTTGTTTAAC 59.736 45.833 15.11 3.36 37.06 2.01
7518 8060 4.263911 CGCGCTACTACTAGTTGTTTAACC 59.736 45.833 15.11 1.18 37.52 2.85
7519 8061 4.564372 GCGCTACTACTAGTTGTTTAACCC 59.436 45.833 15.11 0.00 37.52 4.11
7520 8062 4.795278 CGCTACTACTAGTTGTTTAACCCG 59.205 45.833 15.11 6.13 37.52 5.28
7521 8063 4.564372 GCTACTACTAGTTGTTTAACCCGC 59.436 45.833 15.11 4.30 37.52 6.13
7522 8064 3.578688 ACTACTAGTTGTTTAACCCGCG 58.421 45.455 0.00 0.00 37.52 6.46
7523 8065 2.531522 ACTAGTTGTTTAACCCGCGT 57.468 45.000 4.92 0.00 37.52 6.01
7524 8066 2.837498 ACTAGTTGTTTAACCCGCGTT 58.163 42.857 4.92 0.00 37.52 4.84
7525 8067 2.545106 ACTAGTTGTTTAACCCGCGTTG 59.455 45.455 4.92 0.00 37.52 4.10
7526 8068 0.029700 AGTTGTTTAACCCGCGTTGC 59.970 50.000 4.92 0.00 37.52 4.17
7527 8069 0.029700 GTTGTTTAACCCGCGTTGCT 59.970 50.000 4.92 0.00 33.17 3.91
7528 8070 1.263752 GTTGTTTAACCCGCGTTGCTA 59.736 47.619 4.92 0.00 33.17 3.49
7529 8071 0.867086 TGTTTAACCCGCGTTGCTAC 59.133 50.000 4.92 0.00 33.17 3.58
7530 8072 1.150827 GTTTAACCCGCGTTGCTACT 58.849 50.000 4.92 0.00 33.17 2.57
7531 8073 2.288702 TGTTTAACCCGCGTTGCTACTA 60.289 45.455 4.92 0.00 33.17 1.82
7532 8074 2.282701 TTAACCCGCGTTGCTACTAG 57.717 50.000 4.92 0.00 33.17 2.57
7533 8075 0.457035 TAACCCGCGTTGCTACTAGG 59.543 55.000 4.92 0.00 33.17 3.02
7534 8076 2.585247 CCCGCGTTGCTACTAGGC 60.585 66.667 4.92 0.00 0.00 3.93
7535 8077 2.494918 CCGCGTTGCTACTAGGCT 59.505 61.111 4.92 0.00 0.00 4.58
7536 8078 1.153628 CCGCGTTGCTACTAGGCTT 60.154 57.895 4.92 0.00 0.00 4.35
7537 8079 0.739813 CCGCGTTGCTACTAGGCTTT 60.740 55.000 4.92 0.00 0.00 3.51
7538 8080 1.076332 CGCGTTGCTACTAGGCTTTT 58.924 50.000 0.00 0.00 0.00 2.27
7539 8081 1.060698 CGCGTTGCTACTAGGCTTTTC 59.939 52.381 0.00 0.00 0.00 2.29
7540 8082 1.397343 GCGTTGCTACTAGGCTTTTCC 59.603 52.381 0.00 0.00 0.00 3.13
7541 8083 2.007608 CGTTGCTACTAGGCTTTTCCC 58.992 52.381 0.00 0.00 34.51 3.97
7542 8084 2.354805 CGTTGCTACTAGGCTTTTCCCT 60.355 50.000 0.00 0.00 39.05 4.20
7543 8085 3.118884 CGTTGCTACTAGGCTTTTCCCTA 60.119 47.826 0.00 0.00 36.41 3.53
7552 8094 6.394025 CTAGGCTTTTCCCTAGTAGTGTAG 57.606 45.833 0.00 0.00 46.16 2.74
7553 8095 4.031611 AGGCTTTTCCCTAGTAGTGTAGG 58.968 47.826 0.00 0.00 39.62 3.18
7562 8104 5.881923 CCTAGTAGTGTAGGGGCATAAAA 57.118 43.478 0.00 0.00 36.63 1.52
7563 8105 5.608449 CCTAGTAGTGTAGGGGCATAAAAC 58.392 45.833 0.00 0.00 36.63 2.43
7564 8106 5.129815 CCTAGTAGTGTAGGGGCATAAAACA 59.870 44.000 0.00 0.00 36.63 2.83
7565 8107 5.508280 AGTAGTGTAGGGGCATAAAACAA 57.492 39.130 0.00 0.00 0.00 2.83
7566 8108 6.074698 AGTAGTGTAGGGGCATAAAACAAT 57.925 37.500 0.00 0.00 0.00 2.71
7567 8109 7.202972 AGTAGTGTAGGGGCATAAAACAATA 57.797 36.000 0.00 0.00 0.00 1.90
7568 8110 7.280356 AGTAGTGTAGGGGCATAAAACAATAG 58.720 38.462 0.00 0.00 0.00 1.73
7569 8111 4.887655 AGTGTAGGGGCATAAAACAATAGC 59.112 41.667 0.00 0.00 0.00 2.97
7570 8112 3.880490 TGTAGGGGCATAAAACAATAGCG 59.120 43.478 0.00 0.00 0.00 4.26
7571 8113 1.681264 AGGGGCATAAAACAATAGCGC 59.319 47.619 0.00 0.00 37.42 5.92
7572 8114 1.681264 GGGGCATAAAACAATAGCGCT 59.319 47.619 17.26 17.26 38.11 5.92
7573 8115 2.100749 GGGGCATAAAACAATAGCGCTT 59.899 45.455 18.68 0.00 38.11 4.68
7574 8116 3.115554 GGGCATAAAACAATAGCGCTTG 58.884 45.455 18.68 12.18 35.58 4.01
7575 8117 3.428862 GGGCATAAAACAATAGCGCTTGT 60.429 43.478 18.68 13.01 41.01 3.16
7577 8119 4.031652 GGCATAAAACAATAGCGCTTGTTG 59.968 41.667 24.09 24.50 45.98 3.33
7578 8120 4.031652 GCATAAAACAATAGCGCTTGTTGG 59.968 41.667 24.09 15.96 45.98 3.77
7579 8121 2.723124 AAACAATAGCGCTTGTTGGG 57.277 45.000 24.09 8.98 45.98 4.12
7580 8122 1.904287 AACAATAGCGCTTGTTGGGA 58.096 45.000 27.86 8.02 45.21 4.37
7581 8123 1.453155 ACAATAGCGCTTGTTGGGAG 58.547 50.000 27.86 12.02 35.90 4.30
7582 8124 0.734889 CAATAGCGCTTGTTGGGAGG 59.265 55.000 18.68 0.00 0.00 4.30
7583 8125 1.032114 AATAGCGCTTGTTGGGAGGC 61.032 55.000 18.68 0.00 0.00 4.70
7584 8126 2.196997 ATAGCGCTTGTTGGGAGGCA 62.197 55.000 18.68 0.00 0.00 4.75
7585 8127 2.404566 TAGCGCTTGTTGGGAGGCAA 62.405 55.000 18.68 0.00 0.00 4.52
7586 8128 2.644992 CGCTTGTTGGGAGGCAAC 59.355 61.111 0.00 0.00 0.00 4.17
7587 8129 2.919494 CGCTTGTTGGGAGGCAACC 61.919 63.158 0.00 0.00 37.17 3.77
7599 8141 4.817318 GGAGGCAACCCAATGAATAAAA 57.183 40.909 0.00 0.00 37.17 1.52
7600 8142 5.357742 GGAGGCAACCCAATGAATAAAAT 57.642 39.130 0.00 0.00 37.17 1.82
7601 8143 5.744171 GGAGGCAACCCAATGAATAAAATT 58.256 37.500 0.00 0.00 37.17 1.82
7602 8144 6.179756 GGAGGCAACCCAATGAATAAAATTT 58.820 36.000 0.00 0.00 37.17 1.82
7603 8145 7.334858 GGAGGCAACCCAATGAATAAAATTTA 58.665 34.615 0.00 0.00 37.17 1.40
7604 8146 7.992608 GGAGGCAACCCAATGAATAAAATTTAT 59.007 33.333 0.00 0.00 37.17 1.40
7605 8147 9.394767 GAGGCAACCCAATGAATAAAATTTATT 57.605 29.630 10.43 10.43 37.17 1.40
7606 8148 9.752228 AGGCAACCCAATGAATAAAATTTATTT 57.248 25.926 11.73 0.00 37.17 1.40
7656 8198 8.655378 GTGTTTACACAATTATGCTACTGTTC 57.345 34.615 8.09 0.00 45.75 3.18
7657 8199 8.504005 GTGTTTACACAATTATGCTACTGTTCT 58.496 33.333 8.09 0.00 45.75 3.01
7658 8200 9.062524 TGTTTACACAATTATGCTACTGTTCTT 57.937 29.630 0.00 0.00 0.00 2.52
7663 8205 9.231297 ACACAATTATGCTACTGTTCTTATTGT 57.769 29.630 0.00 0.00 0.00 2.71
7664 8206 9.494479 CACAATTATGCTACTGTTCTTATTGTG 57.506 33.333 0.00 0.00 38.29 3.33
7665 8207 9.231297 ACAATTATGCTACTGTTCTTATTGTGT 57.769 29.630 0.00 0.00 0.00 3.72
7704 8246 8.863872 ATTAGTGTTTGTGCTAAGTAAATCCT 57.136 30.769 0.00 0.00 31.70 3.24
7705 8247 8.685838 TTAGTGTTTGTGCTAAGTAAATCCTT 57.314 30.769 0.00 0.00 0.00 3.36
7706 8248 7.582667 AGTGTTTGTGCTAAGTAAATCCTTT 57.417 32.000 0.00 0.00 0.00 3.11
7707 8249 7.425606 AGTGTTTGTGCTAAGTAAATCCTTTG 58.574 34.615 0.00 0.00 0.00 2.77
7708 8250 6.640907 GTGTTTGTGCTAAGTAAATCCTTTGG 59.359 38.462 0.00 0.00 0.00 3.28
7709 8251 5.975693 TTGTGCTAAGTAAATCCTTTGGG 57.024 39.130 0.00 0.00 0.00 4.12
7710 8252 5.249780 TGTGCTAAGTAAATCCTTTGGGA 57.750 39.130 0.00 0.00 46.81 4.37
7721 8263 3.541242 TCCTTTGGGATCATGTTTGGT 57.459 42.857 0.00 0.00 36.57 3.67
7722 8264 3.164268 TCCTTTGGGATCATGTTTGGTG 58.836 45.455 0.00 0.00 36.57 4.17
7723 8265 3.164268 CCTTTGGGATCATGTTTGGTGA 58.836 45.455 0.00 0.00 33.58 4.02
7724 8266 3.770933 CCTTTGGGATCATGTTTGGTGAT 59.229 43.478 0.00 0.00 38.94 3.06
7725 8267 4.955450 CCTTTGGGATCATGTTTGGTGATA 59.045 41.667 0.00 0.00 36.49 2.15
7726 8268 5.068198 CCTTTGGGATCATGTTTGGTGATAG 59.932 44.000 0.00 0.00 36.49 2.08
7727 8269 4.860802 TGGGATCATGTTTGGTGATAGT 57.139 40.909 0.00 0.00 36.49 2.12
7728 8270 5.191727 TGGGATCATGTTTGGTGATAGTT 57.808 39.130 0.00 0.00 36.49 2.24
7729 8271 4.949238 TGGGATCATGTTTGGTGATAGTTG 59.051 41.667 0.00 0.00 36.49 3.16
7730 8272 5.192927 GGGATCATGTTTGGTGATAGTTGA 58.807 41.667 0.00 0.00 36.49 3.18
7731 8273 5.829924 GGGATCATGTTTGGTGATAGTTGAT 59.170 40.000 0.00 0.00 36.49 2.57
7732 8274 6.322201 GGGATCATGTTTGGTGATAGTTGATT 59.678 38.462 0.00 0.00 36.49 2.57
7733 8275 7.147846 GGGATCATGTTTGGTGATAGTTGATTT 60.148 37.037 0.00 0.00 36.49 2.17
7734 8276 7.703621 GGATCATGTTTGGTGATAGTTGATTTG 59.296 37.037 0.00 0.00 36.49 2.32
7735 8277 7.757941 TCATGTTTGGTGATAGTTGATTTGA 57.242 32.000 0.00 0.00 0.00 2.69
7736 8278 8.352137 TCATGTTTGGTGATAGTTGATTTGAT 57.648 30.769 0.00 0.00 0.00 2.57
7737 8279 8.461222 TCATGTTTGGTGATAGTTGATTTGATC 58.539 33.333 0.00 0.00 0.00 2.92
7738 8280 8.464404 CATGTTTGGTGATAGTTGATTTGATCT 58.536 33.333 0.00 0.00 0.00 2.75
7739 8281 8.408043 TGTTTGGTGATAGTTGATTTGATCTT 57.592 30.769 0.00 0.00 0.00 2.40
7740 8282 8.298854 TGTTTGGTGATAGTTGATTTGATCTTG 58.701 33.333 0.00 0.00 0.00 3.02
7741 8283 8.299570 GTTTGGTGATAGTTGATTTGATCTTGT 58.700 33.333 0.00 0.00 0.00 3.16
7742 8284 8.408043 TTGGTGATAGTTGATTTGATCTTGTT 57.592 30.769 0.00 0.00 0.00 2.83
7743 8285 7.819644 TGGTGATAGTTGATTTGATCTTGTTG 58.180 34.615 0.00 0.00 0.00 3.33
7744 8286 7.665145 TGGTGATAGTTGATTTGATCTTGTTGA 59.335 33.333 0.00 0.00 0.00 3.18
7745 8287 8.514594 GGTGATAGTTGATTTGATCTTGTTGAA 58.485 33.333 0.00 0.00 0.00 2.69
7746 8288 9.897744 GTGATAGTTGATTTGATCTTGTTGAAA 57.102 29.630 0.00 0.00 0.00 2.69
7762 8304 8.591312 TCTTGTTGAAAAATAGAAACTTTTGCG 58.409 29.630 0.00 0.00 0.00 4.85
7763 8305 6.700978 TGTTGAAAAATAGAAACTTTTGCGC 58.299 32.000 0.00 0.00 0.00 6.09
7764 8306 5.898630 TGAAAAATAGAAACTTTTGCGCC 57.101 34.783 4.18 0.00 0.00 6.53
7765 8307 4.442733 TGAAAAATAGAAACTTTTGCGCCG 59.557 37.500 4.18 0.00 0.00 6.46
7766 8308 2.629639 AATAGAAACTTTTGCGCCGG 57.370 45.000 4.18 0.00 0.00 6.13
7767 8309 1.530323 ATAGAAACTTTTGCGCCGGT 58.470 45.000 4.18 0.00 0.00 5.28
7768 8310 2.166821 TAGAAACTTTTGCGCCGGTA 57.833 45.000 4.18 0.00 0.00 4.02
7769 8311 0.872388 AGAAACTTTTGCGCCGGTAG 59.128 50.000 4.18 0.00 0.00 3.18
7770 8312 0.728129 GAAACTTTTGCGCCGGTAGC 60.728 55.000 15.59 15.59 38.52 3.58
7771 8313 1.448922 AAACTTTTGCGCCGGTAGCA 61.449 50.000 20.08 20.08 44.04 3.49
7772 8314 1.852067 AACTTTTGCGCCGGTAGCAG 61.852 55.000 22.11 15.34 46.01 4.24
7773 8315 2.031314 TTTTGCGCCGGTAGCAGA 59.969 55.556 22.11 17.17 46.01 4.26
7774 8316 1.573829 CTTTTGCGCCGGTAGCAGAA 61.574 55.000 22.11 21.90 46.01 3.02
7775 8317 0.958382 TTTTGCGCCGGTAGCAGAAT 60.958 50.000 22.11 0.00 46.01 2.40
7776 8318 0.958382 TTTGCGCCGGTAGCAGAATT 60.958 50.000 22.11 0.00 46.01 2.17
7777 8319 0.958382 TTGCGCCGGTAGCAGAATTT 60.958 50.000 22.11 0.00 46.01 1.82
7778 8320 0.958382 TGCGCCGGTAGCAGAATTTT 60.958 50.000 20.08 0.00 44.04 1.82
7779 8321 1.011333 GCGCCGGTAGCAGAATTTTA 58.989 50.000 17.16 0.00 44.04 1.52
7780 8322 1.399089 GCGCCGGTAGCAGAATTTTAA 59.601 47.619 17.16 0.00 44.04 1.52
7781 8323 2.159490 GCGCCGGTAGCAGAATTTTAAA 60.159 45.455 17.16 0.00 44.04 1.52
7782 8324 3.671164 GCGCCGGTAGCAGAATTTTAAAA 60.671 43.478 17.16 2.51 44.04 1.52
7783 8325 4.477780 CGCCGGTAGCAGAATTTTAAAAA 58.522 39.130 1.90 0.00 44.04 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 1.663695 AATATTTGGGTGGACGCGAG 58.336 50.000 15.93 0.00 0.00 5.03
81 82 5.435041 TCCAGGATCCAAGTAATATTTGGGT 59.565 40.000 15.82 7.33 44.18 4.51
127 128 3.161557 GGTGCACCTTCTCCACCT 58.838 61.111 29.12 0.00 44.32 4.00
177 178 1.481055 GGCATGCCAATGAAGGGGATA 60.481 52.381 32.08 0.00 34.38 2.59
179 180 1.381599 GGCATGCCAATGAAGGGGA 60.382 57.895 32.08 0.00 35.67 4.81
215 216 3.300857 CATACACTCAGCGAATAGGACG 58.699 50.000 0.00 0.00 0.00 4.79
294 295 4.899239 CGCCTCCCCGATGTCTGC 62.899 72.222 0.00 0.00 0.00 4.26
300 301 2.363795 TGACTTCGCCTCCCCGAT 60.364 61.111 0.00 0.00 37.06 4.18
312 313 1.005630 GCGCCAGAGAGTGTGACTT 60.006 57.895 0.00 0.00 0.00 3.01
317 318 3.753434 CGAGGCGCCAGAGAGTGT 61.753 66.667 31.54 4.27 0.00 3.55
383 385 0.179000 AATCTGTCATGGTCGGAGGC 59.821 55.000 0.00 0.00 0.00 4.70
410 418 2.641559 GTCGGTCGACGTGAGGTT 59.358 61.111 9.92 0.00 44.69 3.50
430 438 2.579738 GAGTCCGGAGCCTTGACC 59.420 66.667 3.06 0.00 0.00 4.02
442 450 1.258676 ACTCTTCCTTGTCGGAGTCC 58.741 55.000 0.00 0.00 44.28 3.85
504 512 5.655532 AGGTAAAGTAGGATATGTGACACGT 59.344 40.000 5.47 5.47 0.00 4.49
523 531 2.642254 CCGGTCGTCAGCCAGGTAA 61.642 63.158 0.00 0.00 0.00 2.85
529 537 4.373116 TTGCTCCGGTCGTCAGCC 62.373 66.667 9.40 0.00 31.68 4.85
534 542 0.591170 CAAAATGTTGCTCCGGTCGT 59.409 50.000 0.00 0.00 0.00 4.34
535 543 0.871722 TCAAAATGTTGCTCCGGTCG 59.128 50.000 0.00 0.00 34.50 4.79
586 594 4.162690 GGGCTCGTCCGGCTTCAT 62.163 66.667 0.00 0.00 34.94 2.57
602 610 2.738314 CGTAAAACCCAGTCTAAACGGG 59.262 50.000 0.00 0.00 41.89 5.28
612 620 1.000827 TGCATGCAACGTAAAACCCAG 60.001 47.619 20.30 0.00 0.00 4.45
631 639 4.755123 AGAAACCTCAAGTCCGTACAATTG 59.245 41.667 3.24 3.24 0.00 2.32
643 921 9.231297 TGAATACCTTAATTCAGAAACCTCAAG 57.769 33.333 0.00 0.00 40.17 3.02
693 974 4.061949 GGACAACCGCCCGTTAAA 57.938 55.556 0.00 0.00 31.77 1.52
703 984 1.209127 CAAATGACCGCGGACAACC 59.791 57.895 35.90 15.09 0.00 3.77
714 995 3.056607 CACATTCAACCCCCTCAAATGAC 60.057 47.826 0.00 0.00 32.86 3.06
715 996 3.164268 CACATTCAACCCCCTCAAATGA 58.836 45.455 0.00 0.00 32.86 2.57
739 1020 9.667107 CCTAGGAAAGAAATTAGTACATCACAA 57.333 33.333 1.05 0.00 0.00 3.33
741 1022 7.042658 CGCCTAGGAAAGAAATTAGTACATCAC 60.043 40.741 14.75 0.00 0.00 3.06
743 1024 6.424207 CCGCCTAGGAAAGAAATTAGTACATC 59.576 42.308 14.75 0.00 45.00 3.06
744 1025 6.289064 CCGCCTAGGAAAGAAATTAGTACAT 58.711 40.000 14.75 0.00 45.00 2.29
745 1026 5.667466 CCGCCTAGGAAAGAAATTAGTACA 58.333 41.667 14.75 0.00 45.00 2.90
746 1027 4.510711 GCCGCCTAGGAAAGAAATTAGTAC 59.489 45.833 14.75 0.00 45.00 2.73
747 1028 4.443881 GGCCGCCTAGGAAAGAAATTAGTA 60.444 45.833 14.75 0.00 45.00 1.82
748 1029 3.542648 GCCGCCTAGGAAAGAAATTAGT 58.457 45.455 14.75 0.00 45.00 2.24
752 1033 0.106669 GGGCCGCCTAGGAAAGAAAT 60.107 55.000 14.75 0.00 45.00 2.17
774 1073 4.735132 CGTGTCGGGGCGTGATGT 62.735 66.667 0.00 0.00 0.00 3.06
775 1074 3.345209 TACGTGTCGGGGCGTGATG 62.345 63.158 0.00 0.00 41.68 3.07
776 1075 3.063704 TACGTGTCGGGGCGTGAT 61.064 61.111 0.00 0.00 41.68 3.06
777 1076 4.041917 GTACGTGTCGGGGCGTGA 62.042 66.667 0.00 0.00 41.68 4.35
795 1094 6.091437 TCTCTCGAGAAAAGGAATTACGTTC 58.909 40.000 17.36 0.00 33.91 3.95
1058 1377 2.975799 CGTGTGTTCCGTTGGGGG 60.976 66.667 0.00 0.00 36.01 5.40
1072 1391 4.147322 GCCCGATTCGTGTGCGTG 62.147 66.667 5.20 0.00 39.49 5.34
1131 1450 4.907875 AGAATAGCCTCCAAGTAGCCATTA 59.092 41.667 0.00 0.00 0.00 1.90
1141 1460 1.137086 GCTGTCGAGAATAGCCTCCAA 59.863 52.381 0.00 0.00 0.00 3.53
1149 1468 2.278596 GCGCCGCTGTCGAGAATA 60.279 61.111 0.00 0.00 38.10 1.75
1260 1588 1.522806 GAATATCGTGTGCGGCCCA 60.523 57.895 0.00 0.00 38.89 5.36
1454 1782 2.122783 AGGGAACACGAGAGAGAGAG 57.877 55.000 0.00 0.00 0.00 3.20
1455 1783 2.040545 AGAAGGGAACACGAGAGAGAGA 59.959 50.000 0.00 0.00 0.00 3.10
1499 1827 0.179084 TCAACAAGGGGATCGATCGC 60.179 55.000 28.94 28.94 38.84 4.58
1591 1919 4.142687 ACGATGCAGTTAACAATTGGCTAC 60.143 41.667 10.83 4.34 0.00 3.58
1878 2334 3.013219 GGTTGAGAGAAAATGGGAGAGC 58.987 50.000 0.00 0.00 0.00 4.09
1994 2453 3.428180 CGGTCCTGTACAGACTCATTCAG 60.428 52.174 24.68 4.10 0.00 3.02
2245 2704 1.440938 CGCCCTCGTCGAGATCTTCT 61.441 60.000 23.74 0.00 0.00 2.85
2404 2863 5.818857 TGGTTAACAGAGTTGTGAGGTTTAC 59.181 40.000 8.10 0.00 37.67 2.01
2416 2875 8.762481 AAGTTAAAGGAATTGGTTAACAGAGT 57.238 30.769 8.10 0.00 32.29 3.24
2658 3124 7.493971 CCACAACATATTTCACCTGAAAAACAA 59.506 33.333 4.61 0.00 45.81 2.83
2758 3224 1.583495 CGTAGCTCCAGTCCACGTCA 61.583 60.000 0.00 0.00 0.00 4.35
2839 3305 2.413963 GCGCACAATGTATGCCCCA 61.414 57.895 0.30 0.00 40.09 4.96
3160 3626 3.877559 CCTCATGATCTTGTAGGTTGCA 58.122 45.455 8.33 0.00 0.00 4.08
3464 3931 5.105756 CCATGGGGAAAAACTACACTCATTC 60.106 44.000 2.85 0.00 35.59 2.67
3680 4147 9.826574 ATTGATGTAGATTGAAATTGATTTGGG 57.173 29.630 0.00 0.00 0.00 4.12
3808 4275 6.016192 ACAAGAGTAGTGATGTTCTTCTTCGA 60.016 38.462 0.00 0.00 0.00 3.71
3899 4366 4.772886 ATTCAGGTAGGCCGTCTAAAAT 57.227 40.909 0.00 0.00 40.50 1.82
4090 4558 0.531657 TCAATGGGCAGCATTTTCCG 59.468 50.000 0.00 0.00 0.00 4.30
4185 4653 2.290514 TGCTCCTTTCATCCAGTTCCTG 60.291 50.000 0.00 0.00 0.00 3.86
4205 4673 9.132521 GATATTCTGAAACATGTTTTCTGGTTG 57.867 33.333 24.02 9.98 32.11 3.77
4267 4735 3.455910 CTGTTCCCCATGATCAGAACCTA 59.544 47.826 17.94 4.94 41.44 3.08
4507 4975 4.026052 CAGGGGATAGCCAATGTTTTTCT 58.974 43.478 0.00 0.00 35.15 2.52
4530 4998 4.660303 AGCAGGATTGATGAATACACCCTA 59.340 41.667 0.00 0.00 0.00 3.53
4687 5161 3.195698 GCCGCAGCCTAAAGGTCG 61.196 66.667 0.00 0.00 37.57 4.79
4711 5185 3.195698 GTGGCGACGATTGGGAGC 61.196 66.667 0.00 0.00 0.00 4.70
4806 5280 6.727824 ACTTTCACACATAACTAGTGCATC 57.272 37.500 0.00 0.00 40.59 3.91
5252 5726 3.200593 GTGGCAGCATCTGGAGCG 61.201 66.667 0.00 0.00 37.01 5.03
5339 5813 4.166011 GCCACGATGAACAGCCGC 62.166 66.667 0.00 0.00 0.00 6.53
5400 5874 1.270414 ACCTCCTGGATCACCTGCAG 61.270 60.000 6.78 6.78 42.62 4.41
5678 6152 1.062121 AGCTTCCCTATGGTCTGCCTA 60.062 52.381 0.00 0.00 35.27 3.93
5742 6216 2.117156 GCGCATTGCAGGACTCCAT 61.117 57.895 9.69 0.00 45.45 3.41
5823 6297 6.000891 TGTTCATTTGTCAGTGAGTAATGC 57.999 37.500 16.81 8.78 0.00 3.56
5878 6352 2.479566 TCTCACCTGTGGAATCAAGC 57.520 50.000 0.00 0.00 0.00 4.01
6030 6504 5.048083 TGAGGCTTCGCTCAATAAAACAATT 60.048 36.000 0.00 0.00 0.00 2.32
6208 6741 8.638685 ACAATTAATTGATATGCTTGTTGCTC 57.361 30.769 30.18 0.00 40.25 4.26
6552 7085 0.464373 TCGGCATCATCAAGCTTCCC 60.464 55.000 0.00 0.00 0.00 3.97
6932 7474 3.804325 CACGTGATGGACCAGTATCATTC 59.196 47.826 10.90 0.00 35.91 2.67
6942 7484 2.604046 ATAAGAGCACGTGATGGACC 57.396 50.000 22.23 0.00 0.00 4.46
7206 7748 7.475137 AGACTTGTGCTCTATATCCTAATCC 57.525 40.000 0.00 0.00 0.00 3.01
7276 7818 5.104259 AGTATTGGGCTCCTCTGTTTTAG 57.896 43.478 0.00 0.00 0.00 1.85
7385 7927 8.697507 AATTGGAAAGGTGGCTTATATCTAAG 57.302 34.615 0.00 0.00 37.90 2.18
7420 7962 3.374764 AGTCTTGGAAAGGTGGCTTTTT 58.625 40.909 0.00 0.00 46.24 1.94
7421 7963 3.032265 AGTCTTGGAAAGGTGGCTTTT 57.968 42.857 0.00 0.00 46.24 2.27
7422 7964 2.755952 AGTCTTGGAAAGGTGGCTTT 57.244 45.000 0.00 0.00 46.24 3.51
7423 7965 2.587522 GAAGTCTTGGAAAGGTGGCTT 58.412 47.619 0.00 0.00 46.24 4.35
7424 7966 1.543429 CGAAGTCTTGGAAAGGTGGCT 60.543 52.381 0.00 0.00 46.24 4.75
7425 7967 0.875059 CGAAGTCTTGGAAAGGTGGC 59.125 55.000 0.00 0.00 46.24 5.01
7426 7968 1.523758 CCGAAGTCTTGGAAAGGTGG 58.476 55.000 0.00 0.00 46.24 4.61
7427 7969 0.875059 GCCGAAGTCTTGGAAAGGTG 59.125 55.000 0.00 0.00 46.24 4.00
7428 7970 0.602905 CGCCGAAGTCTTGGAAAGGT 60.603 55.000 0.00 0.00 46.24 3.50
7429 7971 1.912371 GCGCCGAAGTCTTGGAAAGG 61.912 60.000 0.00 0.00 46.24 3.11
7431 7973 0.319083 TAGCGCCGAAGTCTTGGAAA 59.681 50.000 2.29 0.00 0.00 3.13
7432 7974 0.389426 GTAGCGCCGAAGTCTTGGAA 60.389 55.000 2.29 0.00 0.00 3.53
7433 7975 1.214589 GTAGCGCCGAAGTCTTGGA 59.785 57.895 2.29 0.00 0.00 3.53
7434 7976 0.802607 GAGTAGCGCCGAAGTCTTGG 60.803 60.000 2.29 0.00 0.00 3.61
7435 7977 0.802607 GGAGTAGCGCCGAAGTCTTG 60.803 60.000 2.29 0.00 0.00 3.02
7436 7978 0.966370 AGGAGTAGCGCCGAAGTCTT 60.966 55.000 2.29 0.00 0.00 3.01
7437 7979 0.107312 TAGGAGTAGCGCCGAAGTCT 60.107 55.000 2.29 0.00 0.00 3.24
7438 7980 0.029167 GTAGGAGTAGCGCCGAAGTC 59.971 60.000 2.29 2.18 0.00 3.01
7439 7981 0.679002 TGTAGGAGTAGCGCCGAAGT 60.679 55.000 2.29 0.00 0.00 3.01
7440 7982 0.454600 TTGTAGGAGTAGCGCCGAAG 59.545 55.000 2.29 0.00 0.00 3.79
7441 7983 0.454600 CTTGTAGGAGTAGCGCCGAA 59.545 55.000 2.29 0.00 0.00 4.30
7442 7984 0.679002 ACTTGTAGGAGTAGCGCCGA 60.679 55.000 2.29 0.00 0.00 5.54
7443 7985 0.172803 AACTTGTAGGAGTAGCGCCG 59.827 55.000 2.29 0.00 0.00 6.46
7444 7986 2.798853 GCTAACTTGTAGGAGTAGCGCC 60.799 54.545 2.29 0.00 0.00 6.53
7445 7987 2.099427 AGCTAACTTGTAGGAGTAGCGC 59.901 50.000 0.00 0.00 34.43 5.92
7446 7988 3.128938 ACAGCTAACTTGTAGGAGTAGCG 59.871 47.826 0.00 0.00 34.43 4.26
7447 7989 4.722361 ACAGCTAACTTGTAGGAGTAGC 57.278 45.455 0.00 0.00 31.88 3.58
7448 7990 5.504337 CGCTACAGCTAACTTGTAGGAGTAG 60.504 48.000 12.69 4.25 45.13 2.57
7449 7991 4.334759 CGCTACAGCTAACTTGTAGGAGTA 59.665 45.833 12.69 0.00 45.13 2.59
7450 7992 3.128938 CGCTACAGCTAACTTGTAGGAGT 59.871 47.826 12.69 0.00 45.13 3.85
7451 7993 3.696898 CGCTACAGCTAACTTGTAGGAG 58.303 50.000 12.69 0.00 45.13 3.69
7452 7994 2.159282 GCGCTACAGCTAACTTGTAGGA 60.159 50.000 0.00 0.00 45.13 2.94
7453 7995 2.194271 GCGCTACAGCTAACTTGTAGG 58.806 52.381 0.00 5.84 45.13 3.18
7454 7996 2.194271 GGCGCTACAGCTAACTTGTAG 58.806 52.381 7.64 7.80 46.82 2.74
7455 7997 1.468565 CGGCGCTACAGCTAACTTGTA 60.469 52.381 7.64 0.00 39.32 2.41
7456 7998 0.736325 CGGCGCTACAGCTAACTTGT 60.736 55.000 7.64 0.00 39.32 3.16
7457 7999 0.736325 ACGGCGCTACAGCTAACTTG 60.736 55.000 6.90 0.00 39.32 3.16
7458 8000 0.813184 TACGGCGCTACAGCTAACTT 59.187 50.000 6.90 0.00 39.32 2.66
7459 8001 0.381089 CTACGGCGCTACAGCTAACT 59.619 55.000 6.90 0.00 39.32 2.24
7460 8002 1.207377 GCTACGGCGCTACAGCTAAC 61.207 60.000 6.90 0.00 39.32 2.34
7461 8003 1.065273 GCTACGGCGCTACAGCTAA 59.935 57.895 6.90 0.00 39.32 3.09
7462 8004 2.060004 CTGCTACGGCGCTACAGCTA 62.060 60.000 21.86 11.68 42.25 3.32
7463 8005 3.417275 CTGCTACGGCGCTACAGCT 62.417 63.158 21.86 0.00 42.25 4.24
7464 8006 2.332362 TACTGCTACGGCGCTACAGC 62.332 60.000 19.41 16.77 42.25 4.40
7465 8007 0.317103 CTACTGCTACGGCGCTACAG 60.317 60.000 18.32 18.32 42.25 2.74
7466 8008 1.725665 CTACTGCTACGGCGCTACA 59.274 57.895 6.90 0.72 42.25 2.74
7467 8009 1.657794 GCTACTGCTACGGCGCTAC 60.658 63.158 6.90 0.00 42.25 3.58
7468 8010 2.719979 GCTACTGCTACGGCGCTA 59.280 61.111 6.90 0.00 42.25 4.26
7469 8011 4.554363 CGCTACTGCTACGGCGCT 62.554 66.667 6.90 0.00 41.08 5.92
7472 8014 1.008767 CCTACGCTACTGCTACGGC 60.009 63.158 0.00 0.00 36.97 5.68
7473 8015 1.008767 GCCTACGCTACTGCTACGG 60.009 63.158 0.00 0.00 36.97 4.02
7474 8016 0.591741 GTGCCTACGCTACTGCTACG 60.592 60.000 0.00 0.00 36.97 3.51
7475 8017 0.248949 GGTGCCTACGCTACTGCTAC 60.249 60.000 0.00 0.00 36.97 3.58
7476 8018 1.389609 GGGTGCCTACGCTACTGCTA 61.390 60.000 0.00 0.00 36.86 3.49
7477 8019 2.722201 GGGTGCCTACGCTACTGCT 61.722 63.158 0.00 0.00 36.86 4.24
7478 8020 2.202892 GGGTGCCTACGCTACTGC 60.203 66.667 0.00 0.00 36.86 4.40
7479 8021 2.104331 CGGGTGCCTACGCTACTG 59.896 66.667 0.00 0.00 37.59 2.74
7486 8028 2.484062 TAGTAGCGCGGGTGCCTAC 61.484 63.158 8.83 10.49 41.38 3.18
7487 8029 2.124193 TAGTAGCGCGGGTGCCTA 60.124 61.111 8.83 0.00 38.08 3.93
7488 8030 2.898920 TAGTAGTAGCGCGGGTGCCT 62.899 60.000 8.83 0.00 38.08 4.75
7489 8031 2.403671 CTAGTAGTAGCGCGGGTGCC 62.404 65.000 8.83 0.00 38.08 5.01
7490 8032 1.008767 CTAGTAGTAGCGCGGGTGC 60.009 63.158 8.83 0.00 37.91 5.01
7491 8033 0.737219 AACTAGTAGTAGCGCGGGTG 59.263 55.000 8.83 0.00 0.00 4.61
7492 8034 0.737219 CAACTAGTAGTAGCGCGGGT 59.263 55.000 8.83 0.00 0.00 5.28
7493 8035 0.737219 ACAACTAGTAGTAGCGCGGG 59.263 55.000 8.83 0.00 0.00 6.13
7494 8036 2.556534 AACAACTAGTAGTAGCGCGG 57.443 50.000 8.83 0.00 0.00 6.46
7495 8037 4.263911 GGTTAAACAACTAGTAGTAGCGCG 59.736 45.833 0.00 0.00 0.00 6.86
7496 8038 4.564372 GGGTTAAACAACTAGTAGTAGCGC 59.436 45.833 2.50 0.00 0.00 5.92
7497 8039 4.795278 CGGGTTAAACAACTAGTAGTAGCG 59.205 45.833 2.50 0.00 0.00 4.26
7498 8040 4.564372 GCGGGTTAAACAACTAGTAGTAGC 59.436 45.833 2.50 0.00 0.00 3.58
7499 8041 4.795278 CGCGGGTTAAACAACTAGTAGTAG 59.205 45.833 2.50 2.87 0.00 2.57
7500 8042 4.217550 ACGCGGGTTAAACAACTAGTAGTA 59.782 41.667 12.47 0.00 0.00 1.82
7501 8043 3.005791 ACGCGGGTTAAACAACTAGTAGT 59.994 43.478 12.47 0.00 0.00 2.73
7502 8044 3.578688 ACGCGGGTTAAACAACTAGTAG 58.421 45.455 12.47 0.00 0.00 2.57
7503 8045 3.658757 ACGCGGGTTAAACAACTAGTA 57.341 42.857 12.47 0.00 0.00 1.82
7504 8046 2.531522 ACGCGGGTTAAACAACTAGT 57.468 45.000 12.47 0.00 0.00 2.57
7505 8047 2.663606 GCAACGCGGGTTAAACAACTAG 60.664 50.000 18.17 3.47 33.72 2.57
7506 8048 1.263752 GCAACGCGGGTTAAACAACTA 59.736 47.619 18.17 0.00 33.72 2.24
7507 8049 0.029700 GCAACGCGGGTTAAACAACT 59.970 50.000 18.17 0.00 33.72 3.16
7508 8050 0.029700 AGCAACGCGGGTTAAACAAC 59.970 50.000 18.17 3.91 33.72 3.32
7509 8051 1.263752 GTAGCAACGCGGGTTAAACAA 59.736 47.619 18.17 0.00 33.72 2.83
7510 8052 0.867086 GTAGCAACGCGGGTTAAACA 59.133 50.000 18.17 1.00 33.72 2.83
7511 8053 1.150827 AGTAGCAACGCGGGTTAAAC 58.849 50.000 18.17 14.97 33.72 2.01
7512 8054 2.609350 CTAGTAGCAACGCGGGTTAAA 58.391 47.619 18.17 3.55 33.72 1.52
7513 8055 1.135024 CCTAGTAGCAACGCGGGTTAA 60.135 52.381 18.17 3.92 33.72 2.01
7514 8056 0.457035 CCTAGTAGCAACGCGGGTTA 59.543 55.000 18.17 1.21 33.72 2.85
7515 8057 1.217244 CCTAGTAGCAACGCGGGTT 59.783 57.895 12.67 12.67 36.63 4.11
7516 8058 2.890371 CCTAGTAGCAACGCGGGT 59.110 61.111 12.47 0.00 0.00 5.28
7517 8059 2.573609 AAGCCTAGTAGCAACGCGGG 62.574 60.000 12.47 2.74 34.23 6.13
7518 8060 0.739813 AAAGCCTAGTAGCAACGCGG 60.740 55.000 12.47 0.00 34.23 6.46
7519 8061 1.060698 GAAAAGCCTAGTAGCAACGCG 59.939 52.381 3.53 3.53 34.23 6.01
7520 8062 1.397343 GGAAAAGCCTAGTAGCAACGC 59.603 52.381 0.00 0.00 34.23 4.84
7521 8063 2.007608 GGGAAAAGCCTAGTAGCAACG 58.992 52.381 0.00 0.00 36.66 4.10
7522 8064 3.351794 AGGGAAAAGCCTAGTAGCAAC 57.648 47.619 0.00 0.00 36.66 4.17
7523 8065 4.101856 ACTAGGGAAAAGCCTAGTAGCAA 58.898 43.478 0.56 0.00 44.81 3.91
7524 8066 3.721021 ACTAGGGAAAAGCCTAGTAGCA 58.279 45.455 0.56 0.00 44.81 3.49
7527 8069 5.835582 ACACTACTAGGGAAAAGCCTAGTA 58.164 41.667 6.68 6.68 44.81 1.82
7529 8071 5.302313 CCTACACTACTAGGGAAAAGCCTAG 59.698 48.000 0.00 0.00 41.06 3.02
7530 8072 5.206587 CCTACACTACTAGGGAAAAGCCTA 58.793 45.833 0.00 0.00 36.66 3.93
7531 8073 4.031611 CCTACACTACTAGGGAAAAGCCT 58.968 47.826 0.00 0.00 36.66 4.58
7532 8074 4.403585 CCTACACTACTAGGGAAAAGCC 57.596 50.000 0.00 0.00 30.95 4.35
7540 8082 5.129815 TGTTTTATGCCCCTACACTACTAGG 59.870 44.000 0.00 0.00 34.04 3.02
7541 8083 6.229936 TGTTTTATGCCCCTACACTACTAG 57.770 41.667 0.00 0.00 0.00 2.57
7542 8084 6.623979 TTGTTTTATGCCCCTACACTACTA 57.376 37.500 0.00 0.00 0.00 1.82
7543 8085 5.508280 TTGTTTTATGCCCCTACACTACT 57.492 39.130 0.00 0.00 0.00 2.57
7544 8086 6.017357 GCTATTGTTTTATGCCCCTACACTAC 60.017 42.308 0.00 0.00 0.00 2.73
7545 8087 6.059484 GCTATTGTTTTATGCCCCTACACTA 58.941 40.000 0.00 0.00 0.00 2.74
7546 8088 4.887655 GCTATTGTTTTATGCCCCTACACT 59.112 41.667 0.00 0.00 0.00 3.55
7547 8089 4.261031 CGCTATTGTTTTATGCCCCTACAC 60.261 45.833 0.00 0.00 0.00 2.90
7548 8090 3.880490 CGCTATTGTTTTATGCCCCTACA 59.120 43.478 0.00 0.00 0.00 2.74
7549 8091 3.304458 GCGCTATTGTTTTATGCCCCTAC 60.304 47.826 0.00 0.00 0.00 3.18
7550 8092 2.882137 GCGCTATTGTTTTATGCCCCTA 59.118 45.455 0.00 0.00 0.00 3.53
7551 8093 1.681264 GCGCTATTGTTTTATGCCCCT 59.319 47.619 0.00 0.00 0.00 4.79
7552 8094 1.681264 AGCGCTATTGTTTTATGCCCC 59.319 47.619 8.99 0.00 0.00 5.80
7553 8095 3.115554 CAAGCGCTATTGTTTTATGCCC 58.884 45.455 12.05 0.00 0.00 5.36
7554 8096 3.769536 ACAAGCGCTATTGTTTTATGCC 58.230 40.909 12.05 0.00 40.47 4.40
7562 8104 1.453155 CTCCCAACAAGCGCTATTGT 58.547 50.000 24.74 18.41 45.18 2.71
7563 8105 0.734889 CCTCCCAACAAGCGCTATTG 59.265 55.000 21.67 21.67 36.22 1.90
7564 8106 1.032114 GCCTCCCAACAAGCGCTATT 61.032 55.000 12.05 5.52 0.00 1.73
7565 8107 1.452108 GCCTCCCAACAAGCGCTAT 60.452 57.895 12.05 0.00 0.00 2.97
7566 8108 2.046314 GCCTCCCAACAAGCGCTA 60.046 61.111 12.05 0.00 0.00 4.26
7567 8109 3.790416 TTGCCTCCCAACAAGCGCT 62.790 57.895 2.64 2.64 0.00 5.92
7568 8110 3.294493 TTGCCTCCCAACAAGCGC 61.294 61.111 0.00 0.00 0.00 5.92
7578 8120 4.817318 TTTTATTCATTGGGTTGCCTCC 57.183 40.909 0.00 0.00 0.00 4.30
7579 8121 8.962884 ATAAATTTTATTCATTGGGTTGCCTC 57.037 30.769 0.00 0.00 0.00 4.70
7580 8122 9.752228 AAATAAATTTTATTCATTGGGTTGCCT 57.248 25.926 13.37 0.00 0.00 4.75
7628 8170 9.496873 ACAGTAGCATAATTGTGTAAACACTTA 57.503 29.630 13.95 6.19 46.55 2.24
7629 8171 8.391075 ACAGTAGCATAATTGTGTAAACACTT 57.609 30.769 13.95 4.26 46.55 3.16
7630 8172 7.979444 ACAGTAGCATAATTGTGTAAACACT 57.021 32.000 13.95 0.00 46.55 3.55
7631 8173 8.504005 AGAACAGTAGCATAATTGTGTAAACAC 58.496 33.333 6.29 6.29 46.59 3.32
7632 8174 8.615878 AGAACAGTAGCATAATTGTGTAAACA 57.384 30.769 4.00 0.00 0.00 2.83
7637 8179 9.231297 ACAATAAGAACAGTAGCATAATTGTGT 57.769 29.630 4.00 0.00 34.66 3.72
7638 8180 9.494479 CACAATAAGAACAGTAGCATAATTGTG 57.506 33.333 9.21 9.21 42.72 3.33
7639 8181 9.231297 ACACAATAAGAACAGTAGCATAATTGT 57.769 29.630 0.00 0.00 35.92 2.71
7678 8220 9.297037 AGGATTTACTTAGCACAAACACTAATT 57.703 29.630 0.00 0.00 0.00 1.40
7679 8221 8.863872 AGGATTTACTTAGCACAAACACTAAT 57.136 30.769 0.00 0.00 0.00 1.73
7680 8222 8.685838 AAGGATTTACTTAGCACAAACACTAA 57.314 30.769 0.00 0.00 0.00 2.24
7681 8223 8.564574 CAAAGGATTTACTTAGCACAAACACTA 58.435 33.333 0.00 0.00 35.03 2.74
7682 8224 7.425606 CAAAGGATTTACTTAGCACAAACACT 58.574 34.615 0.00 0.00 35.03 3.55
7683 8225 6.640907 CCAAAGGATTTACTTAGCACAAACAC 59.359 38.462 0.00 0.00 35.03 3.32
7684 8226 6.239176 CCCAAAGGATTTACTTAGCACAAACA 60.239 38.462 0.00 0.00 35.03 2.83
7685 8227 6.015772 TCCCAAAGGATTTACTTAGCACAAAC 60.016 38.462 0.00 0.00 35.03 2.93
7686 8228 6.071984 TCCCAAAGGATTTACTTAGCACAAA 58.928 36.000 0.00 0.00 35.03 2.83
7687 8229 5.636123 TCCCAAAGGATTTACTTAGCACAA 58.364 37.500 0.00 0.00 35.03 3.33
7688 8230 5.249780 TCCCAAAGGATTTACTTAGCACA 57.750 39.130 0.00 0.00 35.03 4.57
7702 8244 3.164268 TCACCAAACATGATCCCAAAGG 58.836 45.455 0.00 0.00 0.00 3.11
7703 8245 5.653769 ACTATCACCAAACATGATCCCAAAG 59.346 40.000 0.00 0.00 37.89 2.77
7704 8246 5.579047 ACTATCACCAAACATGATCCCAAA 58.421 37.500 0.00 0.00 37.89 3.28
7705 8247 5.191727 ACTATCACCAAACATGATCCCAA 57.808 39.130 0.00 0.00 37.89 4.12
7706 8248 4.860802 ACTATCACCAAACATGATCCCA 57.139 40.909 0.00 0.00 37.89 4.37
7707 8249 5.192927 TCAACTATCACCAAACATGATCCC 58.807 41.667 0.00 0.00 37.89 3.85
7708 8250 6.949352 ATCAACTATCACCAAACATGATCC 57.051 37.500 0.00 0.00 37.89 3.36
7709 8251 8.461222 TCAAATCAACTATCACCAAACATGATC 58.539 33.333 0.00 0.00 37.89 2.92
7710 8252 8.352137 TCAAATCAACTATCACCAAACATGAT 57.648 30.769 0.00 0.00 40.02 2.45
7711 8253 7.757941 TCAAATCAACTATCACCAAACATGA 57.242 32.000 0.00 0.00 0.00 3.07
7712 8254 8.464404 AGATCAAATCAACTATCACCAAACATG 58.536 33.333 0.00 0.00 0.00 3.21
7713 8255 8.585471 AGATCAAATCAACTATCACCAAACAT 57.415 30.769 0.00 0.00 0.00 2.71
7714 8256 8.298854 CAAGATCAAATCAACTATCACCAAACA 58.701 33.333 0.00 0.00 0.00 2.83
7715 8257 8.299570 ACAAGATCAAATCAACTATCACCAAAC 58.700 33.333 0.00 0.00 0.00 2.93
7716 8258 8.408043 ACAAGATCAAATCAACTATCACCAAA 57.592 30.769 0.00 0.00 0.00 3.28
7717 8259 8.298854 CAACAAGATCAAATCAACTATCACCAA 58.701 33.333 0.00 0.00 0.00 3.67
7718 8260 7.665145 TCAACAAGATCAAATCAACTATCACCA 59.335 33.333 0.00 0.00 0.00 4.17
7719 8261 8.044060 TCAACAAGATCAAATCAACTATCACC 57.956 34.615 0.00 0.00 0.00 4.02
7720 8262 9.897744 TTTCAACAAGATCAAATCAACTATCAC 57.102 29.630 0.00 0.00 0.00 3.06
7736 8278 8.591312 CGCAAAAGTTTCTATTTTTCAACAAGA 58.409 29.630 0.00 0.00 0.00 3.02
7737 8279 7.370576 GCGCAAAAGTTTCTATTTTTCAACAAG 59.629 33.333 0.30 0.00 0.00 3.16
7738 8280 7.176741 GCGCAAAAGTTTCTATTTTTCAACAA 58.823 30.769 0.30 0.00 0.00 2.83
7739 8281 6.237969 GGCGCAAAAGTTTCTATTTTTCAACA 60.238 34.615 10.83 0.00 0.00 3.33
7740 8282 6.126741 GGCGCAAAAGTTTCTATTTTTCAAC 58.873 36.000 10.83 0.00 0.00 3.18
7741 8283 5.051374 CGGCGCAAAAGTTTCTATTTTTCAA 60.051 36.000 10.83 0.00 0.00 2.69
7742 8284 4.442733 CGGCGCAAAAGTTTCTATTTTTCA 59.557 37.500 10.83 0.00 0.00 2.69
7743 8285 4.143410 CCGGCGCAAAAGTTTCTATTTTTC 60.143 41.667 10.83 0.00 0.00 2.29
7744 8286 3.738791 CCGGCGCAAAAGTTTCTATTTTT 59.261 39.130 10.83 0.00 0.00 1.94
7745 8287 3.243602 ACCGGCGCAAAAGTTTCTATTTT 60.244 39.130 10.83 0.00 0.00 1.82
7746 8288 2.295070 ACCGGCGCAAAAGTTTCTATTT 59.705 40.909 10.83 0.00 0.00 1.40
7747 8289 1.883926 ACCGGCGCAAAAGTTTCTATT 59.116 42.857 10.83 0.00 0.00 1.73
7748 8290 1.530323 ACCGGCGCAAAAGTTTCTAT 58.470 45.000 10.83 0.00 0.00 1.98
7749 8291 2.070783 CTACCGGCGCAAAAGTTTCTA 58.929 47.619 10.83 0.00 0.00 2.10
7750 8292 0.872388 CTACCGGCGCAAAAGTTTCT 59.128 50.000 10.83 0.00 0.00 2.52
7751 8293 0.728129 GCTACCGGCGCAAAAGTTTC 60.728 55.000 10.83 0.00 0.00 2.78
7752 8294 1.284715 GCTACCGGCGCAAAAGTTT 59.715 52.632 10.83 0.00 0.00 2.66
7753 8295 1.852067 CTGCTACCGGCGCAAAAGTT 61.852 55.000 18.24 0.00 45.43 2.66
7754 8296 2.281208 TGCTACCGGCGCAAAAGT 60.281 55.556 15.80 2.56 45.43 2.66
7755 8297 1.573829 TTCTGCTACCGGCGCAAAAG 61.574 55.000 18.24 8.64 45.43 2.27
7756 8298 0.958382 ATTCTGCTACCGGCGCAAAA 60.958 50.000 18.24 12.99 45.43 2.44
7757 8299 0.958382 AATTCTGCTACCGGCGCAAA 60.958 50.000 18.24 14.98 45.43 3.68
7758 8300 0.958382 AAATTCTGCTACCGGCGCAA 60.958 50.000 18.24 6.80 45.43 4.85
7759 8301 0.958382 AAAATTCTGCTACCGGCGCA 60.958 50.000 16.96 16.96 45.43 6.09
7760 8302 1.011333 TAAAATTCTGCTACCGGCGC 58.989 50.000 0.00 5.13 45.43 6.53
7761 8303 3.750639 TTTAAAATTCTGCTACCGGCG 57.249 42.857 0.00 0.00 45.43 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.