Multiple sequence alignment - TraesCS3D01G419000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G419000 chr3D 100.000 2750 0 0 1 2750 531681606 531678857 0.000000e+00 5079.0
1 TraesCS3D01G419000 chr3D 91.813 171 14 0 1580 1750 361777144 361777314 3.540000e-59 239.0
2 TraesCS3D01G419000 chr3D 88.435 147 14 3 2605 2749 537023353 537023208 1.010000e-39 174.0
3 TraesCS3D01G419000 chr3B 90.772 1463 81 25 329 1750 703297887 703296438 0.000000e+00 1905.0
4 TraesCS3D01G419000 chr3B 90.680 397 32 5 2055 2447 703126443 703126048 8.730000e-145 523.0
5 TraesCS3D01G419000 chr3B 74.944 886 170 29 951 1812 703129926 703129069 2.600000e-95 359.0
6 TraesCS3D01G419000 chr3B 89.399 283 22 4 2080 2355 703296303 703296022 1.570000e-92 350.0
7 TraesCS3D01G419000 chr3B 94.304 158 9 0 1593 1750 471485762 471485919 2.740000e-60 243.0
8 TraesCS3D01G419000 chr3B 81.868 182 26 7 1856 2034 264973471 264973294 2.210000e-31 147.0
9 TraesCS3D01G419000 chr3A 88.423 1503 122 29 338 1801 666223347 666221858 0.000000e+00 1764.0
10 TraesCS3D01G419000 chr3A 88.869 566 38 15 2059 2609 666221798 666221243 0.000000e+00 673.0
11 TraesCS3D01G419000 chr3A 91.813 171 14 0 1580 1750 482093309 482093479 3.540000e-59 239.0
12 TraesCS3D01G419000 chr3A 88.000 50 2 1 1 50 666223615 666223570 3.830000e-04 56.5
13 TraesCS3D01G419000 chr7A 86.755 151 18 2 1601 1750 247251714 247251565 1.690000e-37 167.0
14 TraesCS3D01G419000 chr7B 86.093 151 19 2 1601 1750 206337076 206336927 7.880000e-36 161.0
15 TraesCS3D01G419000 chr2D 82.703 185 29 2 1851 2033 16155099 16154916 7.880000e-36 161.0
16 TraesCS3D01G419000 chr2D 85.345 116 12 1 2622 2737 3454871 3454981 6.220000e-22 115.0
17 TraesCS3D01G419000 chr7D 85.000 160 20 4 1594 1750 234348139 234347981 2.830000e-35 159.0
18 TraesCS3D01G419000 chr7D 80.682 176 31 3 1870 2043 397355945 397355771 1.720000e-27 134.0
19 TraesCS3D01G419000 chr6B 82.514 183 27 5 1857 2036 717632942 717633122 3.670000e-34 156.0
20 TraesCS3D01G419000 chrUn 81.481 189 31 4 1857 2042 311940378 311940191 4.740000e-33 152.0
21 TraesCS3D01G419000 chr5D 86.607 112 15 0 2633 2744 50860547 50860436 1.030000e-24 124.0
22 TraesCS3D01G419000 chr4B 80.864 162 27 4 1855 2013 12052404 12052244 1.030000e-24 124.0
23 TraesCS3D01G419000 chr1B 81.250 160 24 5 1856 2013 52063083 52062928 1.030000e-24 124.0
24 TraesCS3D01G419000 chr2B 79.070 172 33 2 1867 2036 15735373 15735543 6.220000e-22 115.0
25 TraesCS3D01G419000 chr5A 78.313 166 31 3 1878 2043 643927701 643927861 4.850000e-18 102.0
26 TraesCS3D01G419000 chr5B 100.000 30 0 0 2610 2639 536835810 536835839 3.830000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G419000 chr3D 531678857 531681606 2749 True 5079.000000 5079 100.000000 1 2750 1 chr3D.!!$R1 2749
1 TraesCS3D01G419000 chr3B 703296022 703297887 1865 True 1127.500000 1905 90.085500 329 2355 2 chr3B.!!$R3 2026
2 TraesCS3D01G419000 chr3B 703126048 703129926 3878 True 441.000000 523 82.812000 951 2447 2 chr3B.!!$R2 1496
3 TraesCS3D01G419000 chr3A 666221243 666223615 2372 True 831.166667 1764 88.430667 1 2609 3 chr3A.!!$R1 2608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 272 0.035152 AGAATGGCGATGCAGTTCCA 60.035 50.0 6.13 6.13 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1882 4551 0.096976 ATGCGTGTTTACATGAGCGC 59.903 50.0 0.0 0.0 44.29 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.611674 CCGGCCAACCAACCAACC 61.612 66.667 2.24 0.00 34.57 3.77
29 30 2.835431 CGGCCAACCAACCAACCA 60.835 61.111 2.24 0.00 34.57 3.67
30 31 2.427245 CGGCCAACCAACCAACCAA 61.427 57.895 2.24 0.00 34.57 3.67
31 32 1.145156 GGCCAACCAACCAACCAAC 59.855 57.895 0.00 0.00 35.26 3.77
41 42 4.072088 CAACCAACGCGCGTCCTC 62.072 66.667 37.77 0.00 0.00 3.71
64 65 1.771848 CGTACATACGTTCGCTACAGC 59.228 52.381 0.00 0.00 44.13 4.40
65 66 2.788750 CGTACATACGTTCGCTACAGCA 60.789 50.000 0.00 0.00 44.13 4.41
66 67 2.579207 ACATACGTTCGCTACAGCAT 57.421 45.000 0.00 0.00 42.21 3.79
67 68 3.703286 ACATACGTTCGCTACAGCATA 57.297 42.857 0.00 0.00 42.21 3.14
68 69 4.238761 ACATACGTTCGCTACAGCATAT 57.761 40.909 0.00 0.00 42.21 1.78
69 70 4.617959 ACATACGTTCGCTACAGCATATT 58.382 39.130 0.00 0.00 42.21 1.28
70 71 5.765176 ACATACGTTCGCTACAGCATATTA 58.235 37.500 0.00 0.00 42.21 0.98
92 93 2.262292 CATGCAGGCCAAAACCGG 59.738 61.111 5.01 0.00 33.69 5.28
93 94 2.996734 ATGCAGGCCAAAACCGGG 60.997 61.111 6.32 0.00 33.69 5.73
94 95 3.826265 ATGCAGGCCAAAACCGGGT 62.826 57.895 6.32 0.00 33.69 5.28
95 96 3.230990 GCAGGCCAAAACCGGGTT 61.231 61.111 6.59 6.59 33.69 4.11
96 97 2.733945 CAGGCCAAAACCGGGTTG 59.266 61.111 14.22 9.54 33.69 3.77
107 108 2.744709 CGGGTTGGGTTAGGTGCG 60.745 66.667 0.00 0.00 0.00 5.34
117 118 2.889606 TTAGGTGCGCAGGGCTTCA 61.890 57.895 12.22 0.00 44.05 3.02
135 136 4.781071 CTTCAGTTCAGCAATGTTCAGTC 58.219 43.478 0.00 0.00 0.00 3.51
136 137 3.807553 TCAGTTCAGCAATGTTCAGTCA 58.192 40.909 0.00 0.00 0.00 3.41
137 138 3.811497 TCAGTTCAGCAATGTTCAGTCAG 59.189 43.478 0.00 0.00 0.00 3.51
138 139 3.562973 CAGTTCAGCAATGTTCAGTCAGT 59.437 43.478 0.00 0.00 0.00 3.41
139 140 3.562973 AGTTCAGCAATGTTCAGTCAGTG 59.437 43.478 0.00 0.00 36.64 3.66
145 146 3.668447 CAATGTTCAGTCAGTGCCTACT 58.332 45.455 0.00 0.00 37.75 2.57
158 159 2.268730 GCCTACTGCAAATCAACAGC 57.731 50.000 0.00 0.00 40.77 4.40
159 160 1.541147 GCCTACTGCAAATCAACAGCA 59.459 47.619 0.00 0.00 40.77 4.41
160 161 2.030007 GCCTACTGCAAATCAACAGCAA 60.030 45.455 0.00 0.00 40.77 3.91
161 162 3.367703 GCCTACTGCAAATCAACAGCAAT 60.368 43.478 0.00 0.00 40.77 3.56
162 163 4.171005 CCTACTGCAAATCAACAGCAATG 58.829 43.478 0.00 0.00 37.89 2.82
163 164 3.738830 ACTGCAAATCAACAGCAATGT 57.261 38.095 0.00 0.00 37.89 2.71
164 165 4.062677 ACTGCAAATCAACAGCAATGTT 57.937 36.364 0.00 0.00 37.89 2.71
165 166 4.053295 ACTGCAAATCAACAGCAATGTTC 58.947 39.130 0.00 0.00 37.89 3.18
166 167 4.052608 CTGCAAATCAACAGCAATGTTCA 58.947 39.130 0.00 0.00 37.89 3.18
167 168 4.052608 TGCAAATCAACAGCAATGTTCAG 58.947 39.130 0.00 0.00 34.97 3.02
168 169 4.053295 GCAAATCAACAGCAATGTTCAGT 58.947 39.130 0.00 0.00 0.00 3.41
169 170 4.084745 GCAAATCAACAGCAATGTTCAGTG 60.085 41.667 0.00 0.00 0.00 3.66
170 171 4.924305 AATCAACAGCAATGTTCAGTGT 57.076 36.364 2.44 0.00 0.00 3.55
174 175 4.511454 TCAACAGCAATGTTCAGTGTCTAC 59.489 41.667 2.44 0.00 0.00 2.59
179 180 3.438087 GCAATGTTCAGTGTCTACAGCAT 59.562 43.478 2.44 0.00 0.00 3.79
184 185 2.897436 TCAGTGTCTACAGCATCATGC 58.103 47.619 0.00 0.00 45.46 4.06
201 202 6.348458 GCATCATGCTAACAGTGTACAGAAAA 60.348 38.462 1.02 0.00 40.96 2.29
202 203 7.627088 GCATCATGCTAACAGTGTACAGAAAAT 60.627 37.037 1.02 0.00 40.96 1.82
203 204 8.882736 CATCATGCTAACAGTGTACAGAAAATA 58.117 33.333 0.00 0.00 0.00 1.40
204 205 8.479313 TCATGCTAACAGTGTACAGAAAATAG 57.521 34.615 0.00 0.00 0.00 1.73
205 206 8.311109 TCATGCTAACAGTGTACAGAAAATAGA 58.689 33.333 0.00 0.00 0.00 1.98
206 207 9.102757 CATGCTAACAGTGTACAGAAAATAGAT 57.897 33.333 0.00 0.00 0.00 1.98
208 209 9.582431 TGCTAACAGTGTACAGAAAATAGATAC 57.418 33.333 0.00 0.00 0.00 2.24
209 210 9.804758 GCTAACAGTGTACAGAAAATAGATACT 57.195 33.333 0.00 0.00 0.00 2.12
213 214 8.414778 ACAGTGTACAGAAAATAGATACTAGGC 58.585 37.037 0.00 0.00 0.00 3.93
214 215 8.414003 CAGTGTACAGAAAATAGATACTAGGCA 58.586 37.037 0.00 0.00 0.00 4.75
216 217 8.414778 GTGTACAGAAAATAGATACTAGGCAGT 58.585 37.037 0.00 0.00 38.91 4.40
217 218 9.636789 TGTACAGAAAATAGATACTAGGCAGTA 57.363 33.333 0.00 0.00 41.47 2.74
218 219 9.896263 GTACAGAAAATAGATACTAGGCAGTAC 57.104 37.037 0.00 0.00 40.06 2.73
219 220 7.649973 ACAGAAAATAGATACTAGGCAGTACG 58.350 38.462 0.00 0.00 40.06 3.67
220 221 6.583050 CAGAAAATAGATACTAGGCAGTACGC 59.417 42.308 0.00 1.72 40.06 4.42
221 222 6.264744 AGAAAATAGATACTAGGCAGTACGCA 59.735 38.462 10.92 0.00 45.17 5.24
222 223 5.373981 AATAGATACTAGGCAGTACGCAC 57.626 43.478 10.92 2.41 45.17 5.34
223 224 1.602851 AGATACTAGGCAGTACGCACG 59.397 52.381 10.92 0.00 45.17 5.34
224 225 0.666913 ATACTAGGCAGTACGCACGG 59.333 55.000 10.92 0.00 45.17 4.94
225 226 1.996786 TACTAGGCAGTACGCACGGC 61.997 60.000 1.90 1.90 45.17 5.68
226 227 3.350909 CTAGGCAGTACGCACGGCA 62.351 63.158 12.97 0.00 46.36 5.69
227 228 3.636313 TAGGCAGTACGCACGGCAC 62.636 63.158 12.97 2.69 46.36 5.01
229 230 3.041940 GCAGTACGCACGGCACTT 61.042 61.111 6.00 0.00 44.27 3.16
230 231 3.011760 GCAGTACGCACGGCACTTC 62.012 63.158 6.00 0.00 44.27 3.01
231 232 2.048503 AGTACGCACGGCACTTCC 60.049 61.111 0.00 0.00 0.00 3.46
232 233 2.356553 GTACGCACGGCACTTCCA 60.357 61.111 0.00 0.00 34.01 3.53
233 234 2.048597 TACGCACGGCACTTCCAG 60.049 61.111 0.00 0.00 34.01 3.86
234 235 3.583276 TACGCACGGCACTTCCAGG 62.583 63.158 0.00 0.00 34.01 4.45
235 236 4.988598 CGCACGGCACTTCCAGGT 62.989 66.667 0.00 0.00 34.01 4.00
236 237 3.357079 GCACGGCACTTCCAGGTG 61.357 66.667 0.00 0.00 39.91 4.00
245 246 4.393155 TTCCAGGTGCGCGCTCAT 62.393 61.111 33.29 24.42 0.00 2.90
246 247 4.819761 TCCAGGTGCGCGCTCATC 62.820 66.667 33.29 13.81 0.00 2.92
248 249 3.120385 CAGGTGCGCGCTCATCAA 61.120 61.111 33.29 7.72 0.00 2.57
249 250 3.121030 AGGTGCGCGCTCATCAAC 61.121 61.111 33.29 20.28 0.00 3.18
250 251 4.166011 GGTGCGCGCTCATCAACC 62.166 66.667 33.29 25.33 0.00 3.77
251 252 4.166011 GTGCGCGCTCATCAACCC 62.166 66.667 33.29 4.71 0.00 4.11
252 253 4.695993 TGCGCGCTCATCAACCCA 62.696 61.111 33.29 4.14 0.00 4.51
253 254 3.869272 GCGCGCTCATCAACCCAG 61.869 66.667 26.67 0.00 0.00 4.45
254 255 2.125552 CGCGCTCATCAACCCAGA 60.126 61.111 5.56 0.00 0.00 3.86
255 256 1.741401 CGCGCTCATCAACCCAGAA 60.741 57.895 5.56 0.00 0.00 3.02
256 257 1.091771 CGCGCTCATCAACCCAGAAT 61.092 55.000 5.56 0.00 0.00 2.40
257 258 0.379669 GCGCTCATCAACCCAGAATG 59.620 55.000 0.00 0.00 0.00 2.67
270 271 0.379669 CAGAATGGCGATGCAGTTCC 59.620 55.000 0.00 0.00 0.00 3.62
271 272 0.035152 AGAATGGCGATGCAGTTCCA 60.035 50.000 6.13 6.13 0.00 3.53
274 275 0.182061 ATGGCGATGCAGTTCCATCT 59.818 50.000 9.74 0.00 39.51 2.90
276 277 0.379669 GGCGATGCAGTTCCATCTTG 59.620 55.000 0.00 0.00 39.51 3.02
278 279 0.379669 CGATGCAGTTCCATCTTGGC 59.620 55.000 0.00 0.00 39.51 4.52
279 280 1.466856 GATGCAGTTCCATCTTGGCA 58.533 50.000 0.00 0.00 38.80 4.92
282 283 2.250031 TGCAGTTCCATCTTGGCAAAT 58.750 42.857 0.00 0.00 37.47 2.32
286 287 5.046448 TGCAGTTCCATCTTGGCAAATAAAT 60.046 36.000 0.00 0.00 37.47 1.40
288 289 6.698766 GCAGTTCCATCTTGGCAAATAAATAG 59.301 38.462 0.00 0.00 37.47 1.73
289 290 7.205297 CAGTTCCATCTTGGCAAATAAATAGG 58.795 38.462 0.00 0.00 37.47 2.57
291 292 7.286316 AGTTCCATCTTGGCAAATAAATAGGAG 59.714 37.037 0.00 0.00 37.47 3.69
293 294 5.279156 CCATCTTGGCAAATAAATAGGAGGC 60.279 44.000 0.00 0.00 0.00 4.70
294 295 3.882888 TCTTGGCAAATAAATAGGAGGCG 59.117 43.478 0.00 0.00 0.00 5.52
295 296 3.569194 TGGCAAATAAATAGGAGGCGA 57.431 42.857 0.00 0.00 0.00 5.54
296 297 3.476552 TGGCAAATAAATAGGAGGCGAG 58.523 45.455 0.00 0.00 0.00 5.03
302 303 5.568620 AATAAATAGGAGGCGAGGTTCAT 57.431 39.130 0.00 0.00 0.00 2.57
303 304 3.477210 AAATAGGAGGCGAGGTTCATC 57.523 47.619 0.00 0.00 0.00 2.92
304 305 2.390225 ATAGGAGGCGAGGTTCATCT 57.610 50.000 0.00 0.00 0.00 2.90
308 309 1.078143 AGGCGAGGTTCATCTTGGC 60.078 57.895 0.00 0.00 42.19 4.52
310 311 2.464459 GCGAGGTTCATCTTGGCCG 61.464 63.158 0.00 0.00 0.00 6.13
311 312 1.218047 CGAGGTTCATCTTGGCCGA 59.782 57.895 0.00 0.00 0.00 5.54
312 313 1.084370 CGAGGTTCATCTTGGCCGAC 61.084 60.000 0.00 0.00 0.00 4.79
313 314 1.079127 AGGTTCATCTTGGCCGACG 60.079 57.895 0.00 0.00 0.00 5.12
314 315 2.750888 GGTTCATCTTGGCCGACGC 61.751 63.158 0.00 0.00 0.00 5.19
316 317 3.289704 TTCATCTTGGCCGACGCGA 62.290 57.895 15.93 0.00 35.02 5.87
324 325 3.419759 GCCGACGCGACCACAATT 61.420 61.111 15.93 0.00 0.00 2.32
325 326 2.095847 GCCGACGCGACCACAATTA 61.096 57.895 15.93 0.00 0.00 1.40
326 327 1.705727 CCGACGCGACCACAATTAC 59.294 57.895 15.93 0.00 0.00 1.89
327 328 0.734942 CCGACGCGACCACAATTACT 60.735 55.000 15.93 0.00 0.00 2.24
343 367 2.579207 TACTTCGAGGTGCATGTAGC 57.421 50.000 10.91 4.68 45.96 3.58
436 475 2.866510 CGTTGCTTGCACGCATCG 60.867 61.111 27.05 27.05 43.69 3.84
486 529 6.882140 TGTTCCAGTACTTCTGTTTCTTCAAA 59.118 34.615 0.00 0.00 42.19 2.69
487 530 7.065803 TGTTCCAGTACTTCTGTTTCTTCAAAG 59.934 37.037 0.00 0.00 42.19 2.77
514 557 2.620112 CCCACTGTTCAAGCGGCAG 61.620 63.158 1.45 0.00 36.41 4.85
515 558 2.620112 CCACTGTTCAAGCGGCAGG 61.620 63.158 1.45 0.00 34.79 4.85
532 575 3.802722 CAGGCGCTGCTATATTTTCTC 57.197 47.619 7.64 0.00 0.00 2.87
537 580 5.477291 AGGCGCTGCTATATTTTCTCTACTA 59.523 40.000 7.64 0.00 0.00 1.82
580 623 1.664151 GCAATCTGCAAGTACGTACCC 59.336 52.381 21.80 11.26 44.26 3.69
587 630 2.737783 TGCAAGTACGTACCCATTTTCG 59.262 45.455 21.80 6.06 0.00 3.46
608 651 4.285003 TCGAAATAGTTTTCCTGACCTCCA 59.715 41.667 0.00 0.00 38.40 3.86
614 657 3.198853 AGTTTTCCTGACCTCCAGCTATC 59.801 47.826 0.00 0.00 41.57 2.08
634 677 5.986004 ATCCCGTCGTCAAAATTTAGATC 57.014 39.130 0.00 0.00 0.00 2.75
646 692 5.649782 AAATTTAGATCACAAGTGGGCAG 57.350 39.130 0.00 0.00 0.00 4.85
712 758 5.048991 AGCGATTCCGTTGTCAAATTTTAGT 60.049 36.000 0.00 0.00 38.24 2.24
744 790 1.892474 GCAAATTACTCCACTGCCCAA 59.108 47.619 0.00 0.00 0.00 4.12
779 825 1.679977 AGGCGCCCGTAGTAAGTCA 60.680 57.895 26.15 0.00 0.00 3.41
1116 1188 2.856032 GACGACGACGACGAGGAA 59.144 61.111 25.15 0.00 42.66 3.36
1309 1384 2.433145 CGAGAAGCAGCGGCAAGA 60.433 61.111 12.44 0.00 44.61 3.02
1554 1638 2.641559 GACAACGACGAGGACGGT 59.358 61.111 0.00 0.00 44.46 4.83
1556 1640 2.501222 CAACGACGAGGACGGTCG 60.501 66.667 12.20 12.20 45.76 4.79
1591 1678 2.159179 AGAGGAAGAAGAGGAGGAGC 57.841 55.000 0.00 0.00 0.00 4.70
1592 1679 1.645919 AGAGGAAGAAGAGGAGGAGCT 59.354 52.381 0.00 0.00 0.00 4.09
1768 1855 0.106819 AACTGGATCCTCTGCCATGC 60.107 55.000 14.23 0.00 32.89 4.06
1774 1861 2.224719 GGATCCTCTGCCATGCATAGTT 60.225 50.000 3.84 0.00 38.13 2.24
1788 1875 1.070376 CATAGTTGCATGTCGCCGATG 60.070 52.381 0.00 0.00 41.33 3.84
1789 1876 0.108377 TAGTTGCATGTCGCCGATGT 60.108 50.000 0.00 0.00 41.33 3.06
1811 4480 7.118496 TGTTCAGTCATGGGTTAATTTGTTT 57.882 32.000 0.00 0.00 0.00 2.83
1842 4511 6.015918 AGAAACAATGTTGGGAATGGATGTA 58.984 36.000 0.00 0.00 0.00 2.29
1843 4512 6.496565 AGAAACAATGTTGGGAATGGATGTAA 59.503 34.615 0.00 0.00 0.00 2.41
1844 4513 6.678568 AACAATGTTGGGAATGGATGTAAA 57.321 33.333 0.00 0.00 0.00 2.01
1845 4514 6.872585 ACAATGTTGGGAATGGATGTAAAT 57.127 33.333 0.00 0.00 0.00 1.40
1846 4515 7.256494 ACAATGTTGGGAATGGATGTAAATT 57.744 32.000 0.00 0.00 0.00 1.82
1847 4516 7.688343 ACAATGTTGGGAATGGATGTAAATTT 58.312 30.769 0.00 0.00 0.00 1.82
1848 4517 8.162746 ACAATGTTGGGAATGGATGTAAATTTT 58.837 29.630 0.00 0.00 0.00 1.82
1849 4518 8.452534 CAATGTTGGGAATGGATGTAAATTTTG 58.547 33.333 0.00 0.00 0.00 2.44
1850 4519 7.308450 TGTTGGGAATGGATGTAAATTTTGA 57.692 32.000 0.00 0.00 0.00 2.69
1851 4520 7.739825 TGTTGGGAATGGATGTAAATTTTGAA 58.260 30.769 0.00 0.00 0.00 2.69
1852 4521 8.213679 TGTTGGGAATGGATGTAAATTTTGAAA 58.786 29.630 0.00 0.00 0.00 2.69
1853 4522 8.503196 GTTGGGAATGGATGTAAATTTTGAAAC 58.497 33.333 0.00 0.00 0.00 2.78
1854 4523 6.870965 TGGGAATGGATGTAAATTTTGAAACG 59.129 34.615 0.00 0.00 0.00 3.60
1855 4524 6.312672 GGGAATGGATGTAAATTTTGAAACGG 59.687 38.462 0.00 0.00 0.00 4.44
1856 4525 6.871492 GGAATGGATGTAAATTTTGAAACGGT 59.129 34.615 0.00 0.00 0.00 4.83
1857 4526 7.386573 GGAATGGATGTAAATTTTGAAACGGTT 59.613 33.333 0.00 0.00 0.00 4.44
1858 4527 8.669946 AATGGATGTAAATTTTGAAACGGTTT 57.330 26.923 5.68 5.68 0.00 3.27
1859 4528 8.669946 ATGGATGTAAATTTTGAAACGGTTTT 57.330 26.923 7.65 0.00 0.00 2.43
1860 4529 8.494016 TGGATGTAAATTTTGAAACGGTTTTT 57.506 26.923 7.65 0.00 0.00 1.94
1861 4530 8.604890 TGGATGTAAATTTTGAAACGGTTTTTC 58.395 29.630 7.65 0.00 0.00 2.29
1862 4531 8.822855 GGATGTAAATTTTGAAACGGTTTTTCT 58.177 29.630 7.65 0.00 0.00 2.52
1865 4534 8.373992 TGTAAATTTTGAAACGGTTTTTCTTCG 58.626 29.630 7.65 0.00 0.00 3.79
1866 4535 7.583860 AAATTTTGAAACGGTTTTTCTTCGA 57.416 28.000 7.65 0.00 0.00 3.71
1867 4536 7.583860 AATTTTGAAACGGTTTTTCTTCGAA 57.416 28.000 7.65 0.00 0.00 3.71
1868 4537 5.995982 TTTGAAACGGTTTTTCTTCGAAC 57.004 34.783 7.65 0.00 0.00 3.95
1869 4538 4.681835 TGAAACGGTTTTTCTTCGAACA 57.318 36.364 7.65 0.00 0.00 3.18
1870 4539 4.405196 TGAAACGGTTTTTCTTCGAACAC 58.595 39.130 7.65 0.00 0.00 3.32
1871 4540 4.083431 TGAAACGGTTTTTCTTCGAACACA 60.083 37.500 7.65 0.00 0.00 3.72
1872 4541 3.668596 ACGGTTTTTCTTCGAACACAG 57.331 42.857 0.00 0.00 0.00 3.66
1873 4542 3.004862 ACGGTTTTTCTTCGAACACAGT 58.995 40.909 0.00 0.00 0.00 3.55
1874 4543 4.183101 ACGGTTTTTCTTCGAACACAGTA 58.817 39.130 0.00 0.00 0.00 2.74
1875 4544 4.033243 ACGGTTTTTCTTCGAACACAGTAC 59.967 41.667 0.00 0.00 0.00 2.73
1876 4545 4.511734 GGTTTTTCTTCGAACACAGTACG 58.488 43.478 0.00 0.00 0.00 3.67
1877 4546 3.847037 TTTTCTTCGAACACAGTACGC 57.153 42.857 0.00 0.00 0.00 4.42
1878 4547 1.401530 TTCTTCGAACACAGTACGCG 58.598 50.000 3.53 3.53 0.00 6.01
1879 4548 0.308684 TCTTCGAACACAGTACGCGT 59.691 50.000 19.17 19.17 0.00 6.01
1880 4549 1.530720 TCTTCGAACACAGTACGCGTA 59.469 47.619 16.41 16.41 0.00 4.42
1881 4550 2.032117 TCTTCGAACACAGTACGCGTAA 60.032 45.455 22.44 1.69 0.00 3.18
1882 4551 1.954437 TCGAACACAGTACGCGTAAG 58.046 50.000 22.44 18.56 43.44 2.34
1897 4566 3.021355 CGTAAGCGCTCATGTAAACAC 57.979 47.619 12.06 0.00 0.00 3.32
1898 4567 2.532193 CGTAAGCGCTCATGTAAACACG 60.532 50.000 12.06 5.78 0.00 4.49
1899 4568 0.165944 AAGCGCTCATGTAAACACGC 59.834 50.000 12.06 7.50 46.20 5.34
1900 4569 1.495509 GCGCTCATGTAAACACGCA 59.504 52.632 0.00 0.00 45.25 5.24
1901 4570 0.096976 GCGCTCATGTAAACACGCAT 59.903 50.000 0.00 0.00 45.25 4.73
1902 4571 1.326245 GCGCTCATGTAAACACGCATA 59.674 47.619 0.00 0.00 45.25 3.14
1903 4572 2.845764 GCGCTCATGTAAACACGCATAC 60.846 50.000 0.00 0.00 45.25 2.39
1904 4573 2.347150 CGCTCATGTAAACACGCATACA 59.653 45.455 0.00 0.00 36.54 2.29
1905 4574 3.670203 GCTCATGTAAACACGCATACAC 58.330 45.455 0.00 0.00 35.05 2.90
1906 4575 3.370978 GCTCATGTAAACACGCATACACT 59.629 43.478 0.00 0.00 35.05 3.55
1907 4576 4.492570 GCTCATGTAAACACGCATACACTC 60.493 45.833 0.00 0.00 35.05 3.51
1908 4577 4.561105 TCATGTAAACACGCATACACTCA 58.439 39.130 0.00 0.00 35.05 3.41
1909 4578 4.991687 TCATGTAAACACGCATACACTCAA 59.008 37.500 0.00 0.00 35.05 3.02
1910 4579 5.641636 TCATGTAAACACGCATACACTCAAT 59.358 36.000 0.00 0.00 35.05 2.57
1911 4580 5.524511 TGTAAACACGCATACACTCAATC 57.475 39.130 0.00 0.00 0.00 2.67
1912 4581 4.390603 TGTAAACACGCATACACTCAATCC 59.609 41.667 0.00 0.00 0.00 3.01
1913 4582 3.334583 AACACGCATACACTCAATCCT 57.665 42.857 0.00 0.00 0.00 3.24
1914 4583 4.465632 AACACGCATACACTCAATCCTA 57.534 40.909 0.00 0.00 0.00 2.94
1915 4584 4.672587 ACACGCATACACTCAATCCTAT 57.327 40.909 0.00 0.00 0.00 2.57
1916 4585 4.371786 ACACGCATACACTCAATCCTATG 58.628 43.478 0.00 0.00 0.00 2.23
1917 4586 4.099419 ACACGCATACACTCAATCCTATGA 59.901 41.667 0.00 0.00 0.00 2.15
1918 4587 5.049828 CACGCATACACTCAATCCTATGAA 58.950 41.667 0.00 0.00 0.00 2.57
1919 4588 5.050490 ACGCATACACTCAATCCTATGAAC 58.950 41.667 0.00 0.00 0.00 3.18
1920 4589 4.148871 CGCATACACTCAATCCTATGAACG 59.851 45.833 0.00 0.00 0.00 3.95
1921 4590 4.084328 GCATACACTCAATCCTATGAACGC 60.084 45.833 0.00 0.00 0.00 4.84
1922 4591 3.610040 ACACTCAATCCTATGAACGCA 57.390 42.857 0.00 0.00 0.00 5.24
1923 4592 3.262420 ACACTCAATCCTATGAACGCAC 58.738 45.455 0.00 0.00 0.00 5.34
1924 4593 3.261580 CACTCAATCCTATGAACGCACA 58.738 45.455 0.00 0.00 0.00 4.57
1925 4594 3.873361 CACTCAATCCTATGAACGCACAT 59.127 43.478 0.94 0.94 0.00 3.21
1926 4595 3.873361 ACTCAATCCTATGAACGCACATG 59.127 43.478 5.39 0.00 0.00 3.21
1927 4596 2.613595 TCAATCCTATGAACGCACATGC 59.386 45.455 0.00 0.00 37.78 4.06
1937 4606 2.745884 GCACATGCGCACACCCTA 60.746 61.111 14.90 0.00 0.00 3.53
1938 4607 3.039202 GCACATGCGCACACCCTAC 62.039 63.158 14.90 0.00 0.00 3.18
1939 4608 2.046314 ACATGCGCACACCCTACC 60.046 61.111 14.90 0.00 0.00 3.18
1940 4609 2.268920 CATGCGCACACCCTACCT 59.731 61.111 14.90 0.00 0.00 3.08
1941 4610 1.815421 CATGCGCACACCCTACCTC 60.815 63.158 14.90 0.00 0.00 3.85
1942 4611 1.990060 ATGCGCACACCCTACCTCT 60.990 57.895 14.90 0.00 0.00 3.69
1943 4612 1.961180 ATGCGCACACCCTACCTCTC 61.961 60.000 14.90 0.00 0.00 3.20
1944 4613 2.352032 GCGCACACCCTACCTCTCT 61.352 63.158 0.30 0.00 0.00 3.10
1945 4614 1.513158 CGCACACCCTACCTCTCTG 59.487 63.158 0.00 0.00 0.00 3.35
1946 4615 0.965866 CGCACACCCTACCTCTCTGA 60.966 60.000 0.00 0.00 0.00 3.27
1947 4616 0.820871 GCACACCCTACCTCTCTGAG 59.179 60.000 0.00 0.00 0.00 3.35
1948 4617 0.820871 CACACCCTACCTCTCTGAGC 59.179 60.000 0.00 0.00 0.00 4.26
1949 4618 0.409876 ACACCCTACCTCTCTGAGCA 59.590 55.000 0.00 0.00 0.00 4.26
1950 4619 0.820871 CACCCTACCTCTCTGAGCAC 59.179 60.000 0.00 0.00 0.00 4.40
1951 4620 0.409876 ACCCTACCTCTCTGAGCACA 59.590 55.000 0.00 0.00 0.00 4.57
1952 4621 1.007721 ACCCTACCTCTCTGAGCACAT 59.992 52.381 0.00 0.00 0.00 3.21
1953 4622 1.686052 CCCTACCTCTCTGAGCACATC 59.314 57.143 0.00 0.00 0.00 3.06
1954 4623 1.686052 CCTACCTCTCTGAGCACATCC 59.314 57.143 0.00 0.00 0.00 3.51
1955 4624 1.336440 CTACCTCTCTGAGCACATCCG 59.664 57.143 0.00 0.00 0.00 4.18
1956 4625 0.323816 ACCTCTCTGAGCACATCCGA 60.324 55.000 0.00 0.00 0.00 4.55
1957 4626 0.385029 CCTCTCTGAGCACATCCGAG 59.615 60.000 0.00 0.00 39.83 4.63
1958 4627 1.387539 CTCTCTGAGCACATCCGAGA 58.612 55.000 0.00 2.48 43.58 4.04
1959 4628 1.387539 TCTCTGAGCACATCCGAGAG 58.612 55.000 0.00 0.00 41.69 3.20
1960 4629 1.065126 TCTCTGAGCACATCCGAGAGA 60.065 52.381 0.00 0.00 41.69 3.10
1961 4630 1.065401 CTCTGAGCACATCCGAGAGAC 59.935 57.143 0.00 0.00 40.67 3.36
1962 4631 0.102120 CTGAGCACATCCGAGAGACC 59.898 60.000 0.00 0.00 0.00 3.85
1963 4632 1.064946 GAGCACATCCGAGAGACCG 59.935 63.158 0.00 0.00 0.00 4.79
1964 4633 1.377366 GAGCACATCCGAGAGACCGA 61.377 60.000 0.00 0.00 0.00 4.69
1965 4634 0.965866 AGCACATCCGAGAGACCGAA 60.966 55.000 0.00 0.00 0.00 4.30
1966 4635 0.103208 GCACATCCGAGAGACCGAAT 59.897 55.000 0.00 0.00 0.00 3.34
1967 4636 1.866063 GCACATCCGAGAGACCGAATC 60.866 57.143 0.00 0.00 0.00 2.52
1968 4637 0.663688 ACATCCGAGAGACCGAATCG 59.336 55.000 0.00 0.00 36.24 3.34
1979 4648 3.605013 CCGAATCGGCATACCATCA 57.395 52.632 9.39 0.00 41.17 3.07
1980 4649 2.099141 CCGAATCGGCATACCATCAT 57.901 50.000 9.39 0.00 41.17 2.45
1981 4650 1.733912 CCGAATCGGCATACCATCATG 59.266 52.381 9.39 0.00 41.17 3.07
1982 4651 2.612721 CCGAATCGGCATACCATCATGA 60.613 50.000 9.39 0.00 41.17 3.07
1983 4652 2.669924 CGAATCGGCATACCATCATGAG 59.330 50.000 0.09 0.00 34.57 2.90
1984 4653 3.614870 CGAATCGGCATACCATCATGAGA 60.615 47.826 0.09 0.00 34.57 3.27
1985 4654 4.511527 GAATCGGCATACCATCATGAGAT 58.488 43.478 0.09 0.00 34.57 2.75
1986 4655 4.564782 ATCGGCATACCATCATGAGATT 57.435 40.909 0.09 0.00 34.57 2.40
1987 4656 4.356405 TCGGCATACCATCATGAGATTT 57.644 40.909 0.09 0.00 34.57 2.17
1988 4657 4.717877 TCGGCATACCATCATGAGATTTT 58.282 39.130 0.09 0.00 34.57 1.82
1989 4658 5.863965 TCGGCATACCATCATGAGATTTTA 58.136 37.500 0.09 0.00 34.57 1.52
1990 4659 5.700832 TCGGCATACCATCATGAGATTTTAC 59.299 40.000 0.09 0.00 34.57 2.01
1991 4660 5.702670 CGGCATACCATCATGAGATTTTACT 59.297 40.000 0.09 0.00 34.57 2.24
1992 4661 6.873605 CGGCATACCATCATGAGATTTTACTA 59.126 38.462 0.09 0.00 34.57 1.82
1993 4662 7.387673 CGGCATACCATCATGAGATTTTACTAA 59.612 37.037 0.09 0.00 34.57 2.24
1994 4663 9.066892 GGCATACCATCATGAGATTTTACTAAA 57.933 33.333 0.09 0.00 35.26 1.85
2007 4676 4.845621 TTTACTAAATCACCGTAAGCGC 57.154 40.909 0.00 0.00 36.67 5.92
2008 4677 1.648504 ACTAAATCACCGTAAGCGCC 58.351 50.000 2.29 0.00 36.67 6.53
2009 4678 1.206371 ACTAAATCACCGTAAGCGCCT 59.794 47.619 2.29 0.00 36.67 5.52
2010 4679 1.859080 CTAAATCACCGTAAGCGCCTC 59.141 52.381 2.29 0.00 36.67 4.70
2011 4680 1.082117 AAATCACCGTAAGCGCCTCG 61.082 55.000 2.29 6.64 36.67 4.63
2012 4681 2.221906 AATCACCGTAAGCGCCTCGT 62.222 55.000 2.29 0.00 36.67 4.18
2013 4682 1.378882 ATCACCGTAAGCGCCTCGTA 61.379 55.000 2.29 0.00 36.67 3.43
2014 4683 1.585521 CACCGTAAGCGCCTCGTAG 60.586 63.158 2.29 0.00 36.67 3.51
2015 4684 2.042831 ACCGTAAGCGCCTCGTAGT 61.043 57.895 2.29 0.00 36.67 2.73
2016 4685 1.298190 CCGTAAGCGCCTCGTAGTC 60.298 63.158 2.29 0.00 36.67 2.59
2017 4686 1.650536 CGTAAGCGCCTCGTAGTCG 60.651 63.158 2.29 0.00 38.55 4.18
2018 4687 1.717937 GTAAGCGCCTCGTAGTCGA 59.282 57.895 2.29 0.00 44.12 4.20
2019 4688 0.588482 GTAAGCGCCTCGTAGTCGAC 60.588 60.000 7.70 7.70 41.35 4.20
2036 4705 2.792599 CGAAGACGTCTCCTCCCG 59.207 66.667 20.33 13.19 34.56 5.14
2037 4706 2.490685 GAAGACGTCTCCTCCCGC 59.509 66.667 20.33 0.00 0.00 6.13
2038 4707 2.035940 AAGACGTCTCCTCCCGCT 59.964 61.111 20.33 0.00 0.00 5.52
2039 4708 0.747283 GAAGACGTCTCCTCCCGCTA 60.747 60.000 20.33 0.00 0.00 4.26
2051 4720 4.153411 TCCTCCCGCTAAAATTTTGGAAA 58.847 39.130 17.51 2.94 0.00 3.13
2133 4838 1.000827 TCGCATGCGAAAAACCAACAT 60.001 42.857 38.48 0.00 46.01 2.71
2144 4849 2.995466 AACCAACATCAATCAGTGCG 57.005 45.000 0.00 0.00 0.00 5.34
2153 4858 0.109597 CAATCAGTGCGGCTTTGGAC 60.110 55.000 0.00 0.00 0.00 4.02
2275 4980 7.815641 TGGATTGTTATGTTCATAACAGTGTG 58.184 34.615 26.34 0.00 45.95 3.82
2379 5085 0.519999 CATCTTGCGCGCTTCTGTTC 60.520 55.000 33.29 0.00 0.00 3.18
2399 5112 2.038952 TCTGATGGGGTCTTCTTGTGTG 59.961 50.000 0.00 0.00 0.00 3.82
2401 5114 2.154462 GATGGGGTCTTCTTGTGTGTG 58.846 52.381 0.00 0.00 0.00 3.82
2403 5116 1.134220 TGGGGTCTTCTTGTGTGTGTC 60.134 52.381 0.00 0.00 0.00 3.67
2405 5118 2.213499 GGGTCTTCTTGTGTGTGTCTG 58.787 52.381 0.00 0.00 0.00 3.51
2411 5124 5.122396 GTCTTCTTGTGTGTGTCTGTTCTTT 59.878 40.000 0.00 0.00 0.00 2.52
2412 5125 5.705441 TCTTCTTGTGTGTGTCTGTTCTTTT 59.295 36.000 0.00 0.00 0.00 2.27
2413 5126 5.295431 TCTTGTGTGTGTCTGTTCTTTTG 57.705 39.130 0.00 0.00 0.00 2.44
2447 5162 4.669965 CGTCTTGTGTATTTGACCATGCTG 60.670 45.833 0.00 0.00 0.00 4.41
2470 5185 2.214216 TGACCGTGAAGGAGGGTGG 61.214 63.158 0.00 0.00 43.17 4.61
2502 5217 2.888513 CATGTGTGCACTGTAGAAGC 57.111 50.000 19.41 0.00 0.00 3.86
2504 5219 0.250295 TGTGTGCACTGTAGAAGCCC 60.250 55.000 19.41 0.00 0.00 5.19
2511 5226 2.290071 GCACTGTAGAAGCCCCTGTTAA 60.290 50.000 0.00 0.00 0.00 2.01
2512 5227 3.809324 GCACTGTAGAAGCCCCTGTTAAA 60.809 47.826 0.00 0.00 0.00 1.52
2540 5255 7.881775 ACAATATTTATCCTTGGAAGACACC 57.118 36.000 0.00 0.00 0.00 4.16
2542 5257 8.061304 ACAATATTTATCCTTGGAAGACACCAT 58.939 33.333 0.00 0.00 39.82 3.55
2543 5258 9.573166 CAATATTTATCCTTGGAAGACACCATA 57.427 33.333 0.00 0.00 39.82 2.74
2545 5260 7.881775 ATTTATCCTTGGAAGACACCATAAC 57.118 36.000 0.00 0.00 39.82 1.89
2546 5261 4.927267 ATCCTTGGAAGACACCATAACA 57.073 40.909 0.00 0.00 39.82 2.41
2547 5262 4.715534 TCCTTGGAAGACACCATAACAA 57.284 40.909 0.00 0.00 39.82 2.83
2548 5263 4.394729 TCCTTGGAAGACACCATAACAAC 58.605 43.478 0.00 0.00 39.82 3.32
2549 5264 3.188460 CCTTGGAAGACACCATAACAACG 59.812 47.826 0.00 0.00 39.82 4.10
2586 5305 7.480760 TCAAAAGAATCTATTTGAAAGGGGG 57.519 36.000 13.93 0.00 41.26 5.40
2609 5328 3.182887 AGTTGGTATTGGCAATGGGAA 57.817 42.857 22.57 8.92 0.00 3.97
2610 5329 3.723325 AGTTGGTATTGGCAATGGGAAT 58.277 40.909 22.57 0.00 0.00 3.01
2611 5330 3.706086 AGTTGGTATTGGCAATGGGAATC 59.294 43.478 22.57 3.49 0.00 2.52
2612 5331 3.395054 TGGTATTGGCAATGGGAATCA 57.605 42.857 22.57 6.28 0.00 2.57
2613 5332 3.717576 TGGTATTGGCAATGGGAATCAA 58.282 40.909 22.57 0.00 0.00 2.57
2614 5333 4.099633 TGGTATTGGCAATGGGAATCAAA 58.900 39.130 22.57 0.00 0.00 2.69
2615 5334 4.533707 TGGTATTGGCAATGGGAATCAAAA 59.466 37.500 22.57 0.00 0.00 2.44
2616 5335 5.118286 GGTATTGGCAATGGGAATCAAAAG 58.882 41.667 22.57 0.00 0.00 2.27
2617 5336 5.104982 GGTATTGGCAATGGGAATCAAAAGA 60.105 40.000 22.57 0.00 0.00 2.52
2618 5337 4.540359 TTGGCAATGGGAATCAAAAGAG 57.460 40.909 0.00 0.00 0.00 2.85
2619 5338 3.777087 TGGCAATGGGAATCAAAAGAGA 58.223 40.909 0.00 0.00 0.00 3.10
2620 5339 4.158786 TGGCAATGGGAATCAAAAGAGAA 58.841 39.130 0.00 0.00 0.00 2.87
2621 5340 4.221262 TGGCAATGGGAATCAAAAGAGAAG 59.779 41.667 0.00 0.00 0.00 2.85
2622 5341 4.463891 GGCAATGGGAATCAAAAGAGAAGA 59.536 41.667 0.00 0.00 0.00 2.87
2623 5342 5.047092 GGCAATGGGAATCAAAAGAGAAGAA 60.047 40.000 0.00 0.00 0.00 2.52
2624 5343 6.458210 GCAATGGGAATCAAAAGAGAAGAAA 58.542 36.000 0.00 0.00 0.00 2.52
2625 5344 6.367149 GCAATGGGAATCAAAAGAGAAGAAAC 59.633 38.462 0.00 0.00 0.00 2.78
2626 5345 5.689383 TGGGAATCAAAAGAGAAGAAACG 57.311 39.130 0.00 0.00 0.00 3.60
2627 5346 5.373222 TGGGAATCAAAAGAGAAGAAACGA 58.627 37.500 0.00 0.00 0.00 3.85
2628 5347 5.825679 TGGGAATCAAAAGAGAAGAAACGAA 59.174 36.000 0.00 0.00 0.00 3.85
2629 5348 6.017109 TGGGAATCAAAAGAGAAGAAACGAAG 60.017 38.462 0.00 0.00 0.00 3.79
2630 5349 6.374578 GGAATCAAAAGAGAAGAAACGAAGG 58.625 40.000 0.00 0.00 0.00 3.46
2631 5350 5.948992 ATCAAAAGAGAAGAAACGAAGGG 57.051 39.130 0.00 0.00 0.00 3.95
2632 5351 5.031066 TCAAAAGAGAAGAAACGAAGGGA 57.969 39.130 0.00 0.00 0.00 4.20
2633 5352 5.057149 TCAAAAGAGAAGAAACGAAGGGAG 58.943 41.667 0.00 0.00 0.00 4.30
2634 5353 2.753055 AGAGAAGAAACGAAGGGAGC 57.247 50.000 0.00 0.00 0.00 4.70
2635 5354 1.971357 AGAGAAGAAACGAAGGGAGCA 59.029 47.619 0.00 0.00 0.00 4.26
2636 5355 2.070028 GAGAAGAAACGAAGGGAGCAC 58.930 52.381 0.00 0.00 0.00 4.40
2637 5356 1.157585 GAAGAAACGAAGGGAGCACC 58.842 55.000 0.00 0.00 40.67 5.01
2638 5357 0.602905 AAGAAACGAAGGGAGCACCG 60.603 55.000 0.00 0.00 46.96 4.94
2639 5358 1.005394 GAAACGAAGGGAGCACCGA 60.005 57.895 0.00 0.00 46.96 4.69
2640 5359 1.004918 AAACGAAGGGAGCACCGAG 60.005 57.895 0.00 0.00 46.96 4.63
2641 5360 3.591254 AACGAAGGGAGCACCGAGC 62.591 63.158 0.00 0.00 46.96 5.03
2650 5369 3.071206 GCACCGAGCCTCCTCAGA 61.071 66.667 0.00 0.00 38.00 3.27
2651 5370 3.074999 GCACCGAGCCTCCTCAGAG 62.075 68.421 0.00 0.00 38.00 3.35
2652 5371 2.757917 ACCGAGCCTCCTCAGAGC 60.758 66.667 0.00 0.00 38.96 4.09
2653 5372 2.441901 CCGAGCCTCCTCAGAGCT 60.442 66.667 0.00 0.00 38.96 4.09
2654 5373 2.489275 CCGAGCCTCCTCAGAGCTC 61.489 68.421 5.27 5.27 38.96 4.09
2655 5374 1.752310 CGAGCCTCCTCAGAGCTCA 60.752 63.158 17.77 0.00 40.44 4.26
2656 5375 1.727511 CGAGCCTCCTCAGAGCTCAG 61.728 65.000 17.77 8.39 40.44 3.35
2657 5376 0.395586 GAGCCTCCTCAGAGCTCAGA 60.396 60.000 17.77 12.99 40.29 3.27
2658 5377 0.396139 AGCCTCCTCAGAGCTCAGAG 60.396 60.000 25.06 25.06 38.96 3.35
2659 5378 2.019897 GCCTCCTCAGAGCTCAGAGC 62.020 65.000 26.24 15.25 42.84 4.09
2660 5379 0.683828 CCTCCTCAGAGCTCAGAGCA 60.684 60.000 26.24 14.40 45.56 4.26
2661 5380 1.405872 CTCCTCAGAGCTCAGAGCAT 58.594 55.000 26.24 9.73 45.56 3.79
2662 5381 2.585330 CTCCTCAGAGCTCAGAGCATA 58.415 52.381 26.24 14.63 45.56 3.14
2663 5382 3.159472 CTCCTCAGAGCTCAGAGCATAT 58.841 50.000 26.24 3.49 45.56 1.78
2664 5383 2.892215 TCCTCAGAGCTCAGAGCATATG 59.108 50.000 26.24 17.97 45.56 1.78
2665 5384 2.028839 CCTCAGAGCTCAGAGCATATGG 60.029 54.545 26.24 14.58 45.56 2.74
2666 5385 1.969208 TCAGAGCTCAGAGCATATGGG 59.031 52.381 24.64 7.56 45.56 4.00
2667 5386 0.686224 AGAGCTCAGAGCATATGGGC 59.314 55.000 24.64 0.00 45.56 5.36
2668 5387 0.321475 GAGCTCAGAGCATATGGGCC 60.321 60.000 24.64 0.00 45.69 5.80
2669 5388 1.670406 GCTCAGAGCATATGGGCCG 60.670 63.158 18.17 0.00 41.89 6.13
2670 5389 1.750930 CTCAGAGCATATGGGCCGT 59.249 57.895 2.58 2.58 0.00 5.68
2671 5390 0.320247 CTCAGAGCATATGGGCCGTC 60.320 60.000 0.00 0.00 0.00 4.79
2672 5391 1.302033 CAGAGCATATGGGCCGTCC 60.302 63.158 0.00 0.00 0.00 4.79
2673 5392 2.357517 GAGCATATGGGCCGTCCG 60.358 66.667 0.00 0.00 38.76 4.79
2674 5393 2.842462 AGCATATGGGCCGTCCGA 60.842 61.111 0.00 0.00 38.76 4.55
2675 5394 2.172483 GAGCATATGGGCCGTCCGAT 62.172 60.000 0.00 0.00 38.76 4.18
2676 5395 1.741770 GCATATGGGCCGTCCGATC 60.742 63.158 0.00 0.00 38.76 3.69
2677 5396 1.975327 CATATGGGCCGTCCGATCT 59.025 57.895 0.00 0.00 38.76 2.75
2678 5397 0.108615 CATATGGGCCGTCCGATCTC 60.109 60.000 0.00 0.00 38.76 2.75
2679 5398 1.595993 ATATGGGCCGTCCGATCTCG 61.596 60.000 0.00 0.00 38.76 4.04
2680 5399 2.971095 TATGGGCCGTCCGATCTCGT 62.971 60.000 0.00 0.00 38.76 4.18
2681 5400 3.834799 GGGCCGTCCGATCTCGTT 61.835 66.667 0.00 0.00 37.74 3.85
2682 5401 2.278661 GGCCGTCCGATCTCGTTC 60.279 66.667 0.00 0.00 37.74 3.95
2683 5402 2.278661 GCCGTCCGATCTCGTTCC 60.279 66.667 0.00 0.00 37.74 3.62
2684 5403 2.772691 GCCGTCCGATCTCGTTCCT 61.773 63.158 0.00 0.00 37.74 3.36
2685 5404 1.064296 CCGTCCGATCTCGTTCCTG 59.936 63.158 0.00 0.00 37.74 3.86
2686 5405 1.374343 CCGTCCGATCTCGTTCCTGA 61.374 60.000 0.00 0.00 37.74 3.86
2687 5406 0.663688 CGTCCGATCTCGTTCCTGAT 59.336 55.000 0.00 0.00 37.74 2.90
2688 5407 1.598183 CGTCCGATCTCGTTCCTGATG 60.598 57.143 0.00 0.00 37.74 3.07
2689 5408 0.385751 TCCGATCTCGTTCCTGATGC 59.614 55.000 0.00 0.00 37.74 3.91
2690 5409 0.936764 CCGATCTCGTTCCTGATGCG 60.937 60.000 0.00 0.00 37.74 4.73
2691 5410 0.248661 CGATCTCGTTCCTGATGCGT 60.249 55.000 0.00 0.00 34.11 5.24
2692 5411 1.799181 CGATCTCGTTCCTGATGCGTT 60.799 52.381 0.00 0.00 34.11 4.84
2693 5412 2.271800 GATCTCGTTCCTGATGCGTTT 58.728 47.619 0.00 0.00 0.00 3.60
2694 5413 2.163818 TCTCGTTCCTGATGCGTTTT 57.836 45.000 0.00 0.00 0.00 2.43
2695 5414 2.066262 TCTCGTTCCTGATGCGTTTTC 58.934 47.619 0.00 0.00 0.00 2.29
2697 5416 0.179225 CGTTCCTGATGCGTTTTCGG 60.179 55.000 0.00 0.00 44.29 4.30
2698 5417 0.454452 GTTCCTGATGCGTTTTCGGC 60.454 55.000 0.00 0.00 44.29 5.54
2699 5418 1.582610 TTCCTGATGCGTTTTCGGCC 61.583 55.000 0.00 0.00 44.29 6.13
2700 5419 2.098298 CTGATGCGTTTTCGGCCG 59.902 61.111 22.12 22.12 44.29 6.13
2701 5420 2.666862 TGATGCGTTTTCGGCCGT 60.667 55.556 27.15 1.71 44.29 5.68
2702 5421 2.182614 CTGATGCGTTTTCGGCCGTT 62.183 55.000 27.15 0.61 44.29 4.44
2703 5422 1.795962 GATGCGTTTTCGGCCGTTG 60.796 57.895 27.15 12.41 44.29 4.10
2704 5423 3.262142 ATGCGTTTTCGGCCGTTGG 62.262 57.895 27.15 12.21 44.29 3.77
2705 5424 3.652000 GCGTTTTCGGCCGTTGGA 61.652 61.111 27.15 1.49 44.29 3.53
2706 5425 2.973316 GCGTTTTCGGCCGTTGGAT 61.973 57.895 27.15 0.00 44.29 3.41
2707 5426 1.133869 CGTTTTCGGCCGTTGGATC 59.866 57.895 27.15 10.94 39.94 3.36
2708 5427 1.133869 GTTTTCGGCCGTTGGATCG 59.866 57.895 27.15 0.00 0.00 3.69
2709 5428 2.682876 TTTTCGGCCGTTGGATCGC 61.683 57.895 27.15 0.00 0.00 4.58
2727 5446 4.309950 GCCCACGGTTGACCTCGT 62.310 66.667 0.00 0.00 40.49 4.18
2728 5447 2.048503 CCCACGGTTGACCTCGTC 60.049 66.667 0.00 0.00 37.53 4.20
2729 5448 2.048503 CCACGGTTGACCTCGTCC 60.049 66.667 0.00 0.00 37.53 4.79
2730 5449 2.430244 CACGGTTGACCTCGTCCG 60.430 66.667 0.00 0.00 46.98 4.79
2732 5451 2.126580 CGGTTGACCTCGTCCGTC 60.127 66.667 0.00 0.00 38.45 4.79
2733 5452 2.126580 GGTTGACCTCGTCCGTCG 60.127 66.667 0.00 0.00 41.41 5.12
2734 5453 2.126580 GTTGACCTCGTCCGTCGG 60.127 66.667 4.39 4.39 40.32 4.79
2735 5454 2.281692 TTGACCTCGTCCGTCGGA 60.282 61.111 10.71 10.71 40.32 4.55
2736 5455 1.676635 TTGACCTCGTCCGTCGGAT 60.677 57.895 18.75 0.00 40.32 4.18
2737 5456 0.392863 TTGACCTCGTCCGTCGGATA 60.393 55.000 18.75 8.17 40.32 2.59
2738 5457 0.392863 TGACCTCGTCCGTCGGATAA 60.393 55.000 18.75 7.80 40.32 1.75
2739 5458 0.734889 GACCTCGTCCGTCGGATAAA 59.265 55.000 18.75 5.17 40.32 1.40
2740 5459 1.133025 GACCTCGTCCGTCGGATAAAA 59.867 52.381 18.75 2.60 40.32 1.52
2741 5460 1.545582 ACCTCGTCCGTCGGATAAAAA 59.454 47.619 18.75 0.78 40.32 1.94
2742 5461 1.922545 CCTCGTCCGTCGGATAAAAAC 59.077 52.381 18.75 2.61 40.32 2.43
2743 5462 2.416431 CCTCGTCCGTCGGATAAAAACT 60.416 50.000 18.75 0.00 40.32 2.66
2744 5463 2.597305 CTCGTCCGTCGGATAAAAACTG 59.403 50.000 18.75 1.22 40.32 3.16
2745 5464 2.228582 TCGTCCGTCGGATAAAAACTGA 59.771 45.455 18.75 3.51 40.32 3.41
2746 5465 2.597305 CGTCCGTCGGATAAAAACTGAG 59.403 50.000 18.75 0.00 32.73 3.35
2747 5466 3.671433 CGTCCGTCGGATAAAAACTGAGA 60.671 47.826 18.75 0.00 32.73 3.27
2748 5467 3.611549 GTCCGTCGGATAAAAACTGAGAC 59.388 47.826 18.75 0.00 32.73 3.36
2749 5468 2.928116 CCGTCGGATAAAAACTGAGACC 59.072 50.000 4.91 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.238241 CGTAGAGGACGCGCGTTG 61.238 66.667 38.03 16.27 46.27 4.10
46 47 3.703286 ATGCTGTAGCGAACGTATGTA 57.297 42.857 0.00 0.00 45.83 2.29
47 48 2.579207 ATGCTGTAGCGAACGTATGT 57.421 45.000 0.00 0.00 45.83 2.29
48 49 6.871044 ATAATATGCTGTAGCGAACGTATG 57.129 37.500 0.00 0.00 45.83 2.39
49 50 7.484007 GTGTATAATATGCTGTAGCGAACGTAT 59.516 37.037 0.00 0.00 45.83 3.06
50 51 6.798476 GTGTATAATATGCTGTAGCGAACGTA 59.202 38.462 0.00 0.00 45.83 3.57
51 52 5.628193 GTGTATAATATGCTGTAGCGAACGT 59.372 40.000 0.00 0.00 45.83 3.99
52 53 5.627780 TGTGTATAATATGCTGTAGCGAACG 59.372 40.000 0.00 0.00 45.83 3.95
53 54 7.448228 CATGTGTATAATATGCTGTAGCGAAC 58.552 38.462 0.00 0.00 45.83 3.95
54 55 6.090763 GCATGTGTATAATATGCTGTAGCGAA 59.909 38.462 0.00 0.00 45.83 4.70
55 56 5.576774 GCATGTGTATAATATGCTGTAGCGA 59.423 40.000 0.00 0.00 45.83 4.93
56 57 5.348451 TGCATGTGTATAATATGCTGTAGCG 59.652 40.000 14.46 0.00 45.53 4.26
57 58 6.183360 CCTGCATGTGTATAATATGCTGTAGC 60.183 42.308 14.46 0.00 45.53 3.58
58 59 6.183360 GCCTGCATGTGTATAATATGCTGTAG 60.183 42.308 14.46 7.05 45.53 2.74
59 60 5.643348 GCCTGCATGTGTATAATATGCTGTA 59.357 40.000 14.46 0.04 45.53 2.74
60 61 4.456911 GCCTGCATGTGTATAATATGCTGT 59.543 41.667 14.46 0.00 45.53 4.40
61 62 4.142534 GGCCTGCATGTGTATAATATGCTG 60.143 45.833 14.46 13.61 45.53 4.41
62 63 4.012374 GGCCTGCATGTGTATAATATGCT 58.988 43.478 14.46 0.00 45.53 3.79
63 64 3.758023 TGGCCTGCATGTGTATAATATGC 59.242 43.478 3.32 0.00 45.53 3.14
64 65 5.963176 TTGGCCTGCATGTGTATAATATG 57.037 39.130 3.32 0.00 0.00 1.78
65 66 6.239289 GGTTTTGGCCTGCATGTGTATAATAT 60.239 38.462 3.32 0.00 0.00 1.28
66 67 5.068460 GGTTTTGGCCTGCATGTGTATAATA 59.932 40.000 3.32 0.00 0.00 0.98
67 68 4.141959 GGTTTTGGCCTGCATGTGTATAAT 60.142 41.667 3.32 0.00 0.00 1.28
68 69 3.194542 GGTTTTGGCCTGCATGTGTATAA 59.805 43.478 3.32 0.00 0.00 0.98
69 70 2.757868 GGTTTTGGCCTGCATGTGTATA 59.242 45.455 3.32 0.00 0.00 1.47
70 71 1.550072 GGTTTTGGCCTGCATGTGTAT 59.450 47.619 3.32 0.00 0.00 2.29
92 93 2.281900 TGCGCACCTAACCCAACC 60.282 61.111 5.66 0.00 0.00 3.77
93 94 2.332654 CCTGCGCACCTAACCCAAC 61.333 63.158 5.66 0.00 0.00 3.77
94 95 2.033448 CCTGCGCACCTAACCCAA 59.967 61.111 5.66 0.00 0.00 4.12
95 96 4.028490 CCCTGCGCACCTAACCCA 62.028 66.667 5.66 0.00 0.00 4.51
97 98 3.920093 AAGCCCTGCGCACCTAACC 62.920 63.158 5.66 0.00 41.38 2.85
107 108 1.174712 TTGCTGAACTGAAGCCCTGC 61.175 55.000 0.00 0.00 40.06 4.85
113 114 4.274214 TGACTGAACATTGCTGAACTGAAG 59.726 41.667 0.00 0.00 0.00 3.02
117 118 3.562973 CACTGACTGAACATTGCTGAACT 59.437 43.478 0.00 0.00 0.00 3.01
139 140 1.541147 TGCTGTTGATTTGCAGTAGGC 59.459 47.619 0.00 0.00 45.13 3.93
140 141 3.921119 TTGCTGTTGATTTGCAGTAGG 57.079 42.857 0.00 0.00 38.01 3.18
141 142 4.801891 ACATTGCTGTTGATTTGCAGTAG 58.198 39.130 0.00 0.00 38.01 2.57
142 143 4.852134 ACATTGCTGTTGATTTGCAGTA 57.148 36.364 0.00 0.00 38.01 2.74
143 144 3.738830 ACATTGCTGTTGATTTGCAGT 57.261 38.095 0.00 0.00 38.01 4.40
144 145 4.052608 TGAACATTGCTGTTGATTTGCAG 58.947 39.130 0.00 0.00 45.57 4.41
145 146 4.052608 CTGAACATTGCTGTTGATTTGCA 58.947 39.130 0.00 0.00 45.57 4.08
146 147 4.053295 ACTGAACATTGCTGTTGATTTGC 58.947 39.130 0.00 0.00 45.57 3.68
147 148 5.045215 ACACTGAACATTGCTGTTGATTTG 58.955 37.500 0.00 0.00 45.57 2.32
148 149 5.068198 AGACACTGAACATTGCTGTTGATTT 59.932 36.000 0.00 0.00 45.57 2.17
149 150 4.581824 AGACACTGAACATTGCTGTTGATT 59.418 37.500 0.00 0.00 45.57 2.57
150 151 4.139786 AGACACTGAACATTGCTGTTGAT 58.860 39.130 0.00 0.00 45.57 2.57
151 152 3.544684 AGACACTGAACATTGCTGTTGA 58.455 40.909 0.00 0.00 45.57 3.18
152 153 3.976793 AGACACTGAACATTGCTGTTG 57.023 42.857 0.00 0.00 45.57 3.33
154 155 4.060900 CTGTAGACACTGAACATTGCTGT 58.939 43.478 0.00 0.00 37.12 4.40
155 156 3.120408 GCTGTAGACACTGAACATTGCTG 60.120 47.826 0.00 0.00 0.00 4.41
156 157 3.070018 GCTGTAGACACTGAACATTGCT 58.930 45.455 0.00 0.00 0.00 3.91
157 158 2.807967 TGCTGTAGACACTGAACATTGC 59.192 45.455 0.00 0.00 0.00 3.56
158 159 4.692155 TGATGCTGTAGACACTGAACATTG 59.308 41.667 0.00 0.00 0.00 2.82
159 160 4.898320 TGATGCTGTAGACACTGAACATT 58.102 39.130 0.00 0.00 0.00 2.71
160 161 4.541973 TGATGCTGTAGACACTGAACAT 57.458 40.909 0.00 0.00 0.00 2.71
161 162 4.248058 CATGATGCTGTAGACACTGAACA 58.752 43.478 0.00 0.00 0.00 3.18
162 163 3.063180 GCATGATGCTGTAGACACTGAAC 59.937 47.826 10.72 0.00 40.96 3.18
163 164 3.264947 GCATGATGCTGTAGACACTGAA 58.735 45.455 10.72 0.00 40.96 3.02
164 165 2.897436 GCATGATGCTGTAGACACTGA 58.103 47.619 10.72 0.00 40.96 3.41
179 180 8.311109 TCTATTTTCTGTACACTGTTAGCATGA 58.689 33.333 0.00 0.00 0.00 3.07
193 194 8.781196 CGTACTGCCTAGTATCTATTTTCTGTA 58.219 37.037 0.00 0.00 41.22 2.74
201 202 3.436015 CGTGCGTACTGCCTAGTATCTAT 59.564 47.826 1.24 0.00 45.60 1.98
202 203 2.804527 CGTGCGTACTGCCTAGTATCTA 59.195 50.000 1.24 0.00 45.60 1.98
203 204 1.602851 CGTGCGTACTGCCTAGTATCT 59.397 52.381 1.24 0.00 45.60 1.98
204 205 1.334779 CCGTGCGTACTGCCTAGTATC 60.335 57.143 1.24 0.00 45.60 2.24
205 206 0.666913 CCGTGCGTACTGCCTAGTAT 59.333 55.000 1.24 0.00 45.60 2.12
206 207 1.996786 GCCGTGCGTACTGCCTAGTA 61.997 60.000 8.81 0.00 45.60 1.82
207 208 2.882876 CCGTGCGTACTGCCTAGT 59.117 61.111 1.24 0.00 45.60 2.57
208 209 2.582498 GCCGTGCGTACTGCCTAG 60.582 66.667 8.81 0.00 45.60 3.02
209 210 3.375239 TGCCGTGCGTACTGCCTA 61.375 61.111 16.57 0.00 45.60 3.93
213 214 2.380410 GGAAGTGCCGTGCGTACTG 61.380 63.158 1.24 0.00 0.00 2.74
214 215 2.048503 GGAAGTGCCGTGCGTACT 60.049 61.111 1.24 0.00 0.00 2.73
216 217 2.048597 CTGGAAGTGCCGTGCGTA 60.049 61.111 0.00 0.00 40.66 4.42
217 218 4.988598 CCTGGAAGTGCCGTGCGT 62.989 66.667 0.00 0.00 40.66 5.24
218 219 4.988598 ACCTGGAAGTGCCGTGCG 62.989 66.667 0.00 0.00 40.66 5.34
219 220 3.357079 CACCTGGAAGTGCCGTGC 61.357 66.667 0.00 0.00 40.66 5.34
228 229 4.393155 ATGAGCGCGCACCTGGAA 62.393 61.111 35.10 11.24 0.00 3.53
229 230 4.819761 GATGAGCGCGCACCTGGA 62.820 66.667 35.10 11.67 0.00 3.86
231 232 3.120385 TTGATGAGCGCGCACCTG 61.120 61.111 35.10 0.00 0.00 4.00
232 233 3.121030 GTTGATGAGCGCGCACCT 61.121 61.111 35.10 20.91 0.00 4.00
233 234 4.166011 GGTTGATGAGCGCGCACC 62.166 66.667 35.10 26.08 0.00 5.01
234 235 4.166011 GGGTTGATGAGCGCGCAC 62.166 66.667 35.10 28.49 0.00 5.34
235 236 4.695993 TGGGTTGATGAGCGCGCA 62.696 61.111 35.10 18.17 0.00 6.09
236 237 3.869272 CTGGGTTGATGAGCGCGC 61.869 66.667 26.66 26.66 0.00 6.86
237 238 1.091771 ATTCTGGGTTGATGAGCGCG 61.092 55.000 0.00 0.00 0.00 6.86
238 239 0.379669 CATTCTGGGTTGATGAGCGC 59.620 55.000 0.00 0.00 0.00 5.92
239 240 1.019673 CCATTCTGGGTTGATGAGCG 58.980 55.000 0.00 0.00 32.67 5.03
240 241 0.743097 GCCATTCTGGGTTGATGAGC 59.257 55.000 0.00 0.00 38.19 4.26
241 242 1.019673 CGCCATTCTGGGTTGATGAG 58.980 55.000 0.00 0.00 38.19 2.90
242 243 0.617935 TCGCCATTCTGGGTTGATGA 59.382 50.000 0.00 0.00 38.19 2.92
243 244 1.335810 CATCGCCATTCTGGGTTGATG 59.664 52.381 0.00 0.00 38.19 3.07
244 245 1.683943 CATCGCCATTCTGGGTTGAT 58.316 50.000 0.00 0.00 38.19 2.57
245 246 1.031571 GCATCGCCATTCTGGGTTGA 61.032 55.000 0.00 0.00 38.19 3.18
246 247 1.314534 TGCATCGCCATTCTGGGTTG 61.315 55.000 0.00 0.00 38.19 3.77
247 248 1.001020 TGCATCGCCATTCTGGGTT 60.001 52.632 0.00 0.00 38.19 4.11
248 249 1.452651 CTGCATCGCCATTCTGGGT 60.453 57.895 0.00 0.00 38.19 4.51
249 250 1.033746 AACTGCATCGCCATTCTGGG 61.034 55.000 0.00 0.00 38.19 4.45
250 251 0.379669 GAACTGCATCGCCATTCTGG 59.620 55.000 0.00 0.00 41.55 3.86
251 252 0.379669 GGAACTGCATCGCCATTCTG 59.620 55.000 0.00 0.00 0.00 3.02
252 253 0.035152 TGGAACTGCATCGCCATTCT 60.035 50.000 0.00 0.00 0.00 2.40
253 254 1.002033 GATGGAACTGCATCGCCATTC 60.002 52.381 13.52 5.97 41.00 2.67
254 255 1.027357 GATGGAACTGCATCGCCATT 58.973 50.000 13.52 1.46 41.00 3.16
255 256 0.182061 AGATGGAACTGCATCGCCAT 59.818 50.000 12.52 12.52 43.46 4.40
256 257 0.035152 AAGATGGAACTGCATCGCCA 60.035 50.000 5.67 4.32 33.37 5.69
257 258 0.379669 CAAGATGGAACTGCATCGCC 59.620 55.000 5.67 0.00 33.37 5.54
258 259 0.379669 CCAAGATGGAACTGCATCGC 59.620 55.000 5.67 0.00 40.96 4.58
259 260 0.379669 GCCAAGATGGAACTGCATCG 59.620 55.000 0.00 0.00 40.96 3.84
260 261 1.466856 TGCCAAGATGGAACTGCATC 58.533 50.000 3.19 3.19 40.96 3.91
261 262 1.927487 TTGCCAAGATGGAACTGCAT 58.073 45.000 0.00 0.00 40.96 3.96
262 263 1.702182 TTTGCCAAGATGGAACTGCA 58.298 45.000 0.00 0.00 40.96 4.41
263 264 4.454728 TTATTTGCCAAGATGGAACTGC 57.545 40.909 0.00 0.00 40.96 4.40
264 265 7.068593 TCCTATTTATTTGCCAAGATGGAACTG 59.931 37.037 0.00 0.00 40.96 3.16
270 271 5.563475 CGCCTCCTATTTATTTGCCAAGATG 60.563 44.000 0.00 0.00 0.00 2.90
271 272 4.520492 CGCCTCCTATTTATTTGCCAAGAT 59.480 41.667 0.00 0.00 0.00 2.40
274 275 3.882888 CTCGCCTCCTATTTATTTGCCAA 59.117 43.478 0.00 0.00 0.00 4.52
276 277 2.814336 CCTCGCCTCCTATTTATTTGCC 59.186 50.000 0.00 0.00 0.00 4.52
278 279 5.123227 TGAACCTCGCCTCCTATTTATTTG 58.877 41.667 0.00 0.00 0.00 2.32
279 280 5.367945 TGAACCTCGCCTCCTATTTATTT 57.632 39.130 0.00 0.00 0.00 1.40
282 283 4.223953 AGATGAACCTCGCCTCCTATTTA 58.776 43.478 0.00 0.00 0.00 1.40
286 287 1.757118 CAAGATGAACCTCGCCTCCTA 59.243 52.381 0.00 0.00 0.00 2.94
288 289 0.462759 CCAAGATGAACCTCGCCTCC 60.463 60.000 0.00 0.00 0.00 4.30
289 290 1.092345 GCCAAGATGAACCTCGCCTC 61.092 60.000 0.00 0.00 0.00 4.70
291 292 2.115291 GGCCAAGATGAACCTCGCC 61.115 63.158 0.00 0.00 0.00 5.54
293 294 1.084370 GTCGGCCAAGATGAACCTCG 61.084 60.000 2.24 0.00 0.00 4.63
294 295 1.084370 CGTCGGCCAAGATGAACCTC 61.084 60.000 2.24 0.00 0.00 3.85
295 296 1.079127 CGTCGGCCAAGATGAACCT 60.079 57.895 2.24 0.00 0.00 3.50
296 297 2.750888 GCGTCGGCCAAGATGAACC 61.751 63.158 2.24 0.00 0.00 3.62
308 309 0.734942 AGTAATTGTGGTCGCGTCGG 60.735 55.000 5.77 0.00 0.00 4.79
310 311 1.058695 CGAAGTAATTGTGGTCGCGTC 59.941 52.381 5.77 0.00 0.00 5.19
311 312 1.065358 CGAAGTAATTGTGGTCGCGT 58.935 50.000 5.77 0.00 0.00 6.01
312 313 1.320555 CTCGAAGTAATTGTGGTCGCG 59.679 52.381 0.00 0.00 0.00 5.87
313 314 1.659098 CCTCGAAGTAATTGTGGTCGC 59.341 52.381 0.00 0.00 0.00 5.19
314 315 2.666508 CACCTCGAAGTAATTGTGGTCG 59.333 50.000 0.00 0.00 37.22 4.79
316 317 2.224426 TGCACCTCGAAGTAATTGTGGT 60.224 45.455 0.00 0.00 39.43 4.16
321 322 3.871594 GCTACATGCACCTCGAAGTAATT 59.128 43.478 0.00 0.00 42.31 1.40
322 323 3.458189 GCTACATGCACCTCGAAGTAAT 58.542 45.455 0.00 0.00 42.31 1.89
323 324 2.888594 GCTACATGCACCTCGAAGTAA 58.111 47.619 0.00 0.00 42.31 2.24
324 325 2.579207 GCTACATGCACCTCGAAGTA 57.421 50.000 0.00 0.00 42.31 2.24
325 326 3.442996 GCTACATGCACCTCGAAGT 57.557 52.632 0.00 0.00 42.31 3.01
343 367 0.454600 GGCATGCATGAGAGTTGGTG 59.545 55.000 30.64 1.04 0.00 4.17
344 368 0.330604 AGGCATGCATGAGAGTTGGT 59.669 50.000 30.64 1.57 0.00 3.67
345 369 0.738975 CAGGCATGCATGAGAGTTGG 59.261 55.000 30.64 7.60 0.00 3.77
348 372 1.226542 CCCAGGCATGCATGAGAGT 59.773 57.895 32.39 7.75 0.00 3.24
466 508 8.450964 TCAAACTTTGAAGAAACAGAAGTACTG 58.549 33.333 0.00 0.00 43.41 2.74
486 529 4.620567 GCTTGAACAGTGGGTTTTCAAACT 60.621 41.667 7.72 0.00 40.63 2.66
487 530 3.616821 GCTTGAACAGTGGGTTTTCAAAC 59.383 43.478 7.72 1.41 40.63 2.93
514 557 4.561105 AGTAGAGAAAATATAGCAGCGCC 58.439 43.478 2.29 0.00 0.00 6.53
515 558 6.150318 TGTAGTAGAGAAAATATAGCAGCGC 58.850 40.000 0.00 0.00 0.00 5.92
580 623 7.593825 AGGTCAGGAAAACTATTTCGAAAATG 58.406 34.615 15.66 12.63 44.83 2.32
587 630 4.396478 GCTGGAGGTCAGGAAAACTATTTC 59.604 45.833 0.00 0.00 43.54 2.17
608 651 2.981859 ATTTTGACGACGGGATAGCT 57.018 45.000 0.00 0.00 0.00 3.32
614 657 4.390603 TGTGATCTAAATTTTGACGACGGG 59.609 41.667 4.42 0.00 0.00 5.28
646 692 3.994392 TCGAAATCCTGTACTTGCAAGTC 59.006 43.478 34.29 24.21 40.37 3.01
712 758 4.947388 GGAGTAATTTGCCCACTTGATGTA 59.053 41.667 0.00 0.00 0.00 2.29
744 790 0.184451 CCTGGCTTCCACCATGCTAT 59.816 55.000 0.00 0.00 39.54 2.97
764 810 1.093159 AGTCTGACTTACTACGGGCG 58.907 55.000 4.06 0.00 0.00 6.13
779 825 2.172483 CTGGGTGCCACGCTAAGTCT 62.172 60.000 13.38 0.00 31.67 3.24
1116 1188 4.704833 ATGAGCGTGCACGGCCTT 62.705 61.111 37.47 16.55 40.23 4.35
1173 1245 3.853330 CAGTTGATCGCACCGCCG 61.853 66.667 0.00 0.00 0.00 6.46
1303 1378 0.790814 GACGTGTAGTTGCTCTTGCC 59.209 55.000 0.00 0.00 38.71 4.52
1309 1384 1.006571 CACCGGACGTGTAGTTGCT 60.007 57.895 9.46 0.00 37.73 3.91
1398 1479 2.440430 TCCTCCGCCTCCTCTTCG 60.440 66.667 0.00 0.00 0.00 3.79
1566 1650 2.165437 CTCCTCTTCTTCCTCTTCGTGG 59.835 54.545 0.00 0.00 0.00 4.94
1788 1875 6.423604 CCAAACAAATTAACCCATGACTGAAC 59.576 38.462 0.00 0.00 0.00 3.18
1789 1876 6.325028 TCCAAACAAATTAACCCATGACTGAA 59.675 34.615 0.00 0.00 0.00 3.02
1811 4480 6.985653 TTCCCAACATTGTTTCTTATTCCA 57.014 33.333 0.00 0.00 0.00 3.53
1828 4497 7.386299 CGTTTCAAAATTTACATCCATTCCCAA 59.614 33.333 0.00 0.00 0.00 4.12
1829 4498 6.870965 CGTTTCAAAATTTACATCCATTCCCA 59.129 34.615 0.00 0.00 0.00 4.37
1842 4511 7.583860 TCGAAGAAAAACCGTTTCAAAATTT 57.416 28.000 0.00 0.00 0.00 1.82
1843 4512 7.116519 TGTTCGAAGAAAAACCGTTTCAAAATT 59.883 29.630 0.00 0.00 45.90 1.82
1844 4513 6.586844 TGTTCGAAGAAAAACCGTTTCAAAAT 59.413 30.769 0.00 0.00 45.90 1.82
1845 4514 5.919141 TGTTCGAAGAAAAACCGTTTCAAAA 59.081 32.000 0.00 0.00 45.90 2.44
1846 4515 5.342791 GTGTTCGAAGAAAAACCGTTTCAAA 59.657 36.000 0.00 0.00 45.90 2.69
1847 4516 4.852650 GTGTTCGAAGAAAAACCGTTTCAA 59.147 37.500 0.00 0.00 45.90 2.69
1848 4517 4.083431 TGTGTTCGAAGAAAAACCGTTTCA 60.083 37.500 0.00 0.00 45.90 2.69
1849 4518 4.405196 TGTGTTCGAAGAAAAACCGTTTC 58.595 39.130 0.00 0.00 45.90 2.78
1850 4519 4.083164 ACTGTGTTCGAAGAAAAACCGTTT 60.083 37.500 0.00 0.00 45.90 3.60
1851 4520 3.437741 ACTGTGTTCGAAGAAAAACCGTT 59.562 39.130 0.00 0.00 45.90 4.44
1852 4521 3.004862 ACTGTGTTCGAAGAAAAACCGT 58.995 40.909 0.00 0.00 45.90 4.83
1853 4522 3.668596 ACTGTGTTCGAAGAAAAACCG 57.331 42.857 0.00 0.00 45.90 4.44
1854 4523 4.511734 CGTACTGTGTTCGAAGAAAAACC 58.488 43.478 0.00 0.00 45.90 3.27
1855 4524 3.958151 GCGTACTGTGTTCGAAGAAAAAC 59.042 43.478 0.00 0.00 45.90 2.43
1856 4525 3.301963 CGCGTACTGTGTTCGAAGAAAAA 60.302 43.478 0.00 0.00 45.90 1.94
1857 4526 2.216940 CGCGTACTGTGTTCGAAGAAAA 59.783 45.455 0.00 0.00 45.90 2.29
1858 4527 1.782569 CGCGTACTGTGTTCGAAGAAA 59.217 47.619 0.00 0.00 45.90 2.52
1859 4528 1.268692 ACGCGTACTGTGTTCGAAGAA 60.269 47.619 11.67 0.00 45.90 2.52
1860 4529 0.308684 ACGCGTACTGTGTTCGAAGA 59.691 50.000 11.67 0.00 38.41 2.87
1861 4530 1.954437 TACGCGTACTGTGTTCGAAG 58.046 50.000 16.41 0.00 42.49 3.79
1862 4531 2.309693 CTTACGCGTACTGTGTTCGAA 58.690 47.619 20.44 0.49 42.49 3.71
1863 4532 1.954437 CTTACGCGTACTGTGTTCGA 58.046 50.000 20.44 0.00 42.49 3.71
1864 4533 0.361184 GCTTACGCGTACTGTGTTCG 59.639 55.000 20.44 1.51 42.49 3.95
1877 4546 2.532193 CGTGTTTACATGAGCGCTTACG 60.532 50.000 13.26 1.06 37.42 3.18
1878 4547 2.783316 GCGTGTTTACATGAGCGCTTAC 60.783 50.000 13.26 0.00 41.37 2.34
1879 4548 1.392168 GCGTGTTTACATGAGCGCTTA 59.608 47.619 13.26 8.30 41.37 3.09
1880 4549 0.165944 GCGTGTTTACATGAGCGCTT 59.834 50.000 13.26 0.00 41.37 4.68
1881 4550 0.948623 TGCGTGTTTACATGAGCGCT 60.949 50.000 11.27 11.27 44.34 5.92
1882 4551 0.096976 ATGCGTGTTTACATGAGCGC 59.903 50.000 0.00 0.00 44.29 5.92
1883 4552 2.347150 TGTATGCGTGTTTACATGAGCG 59.653 45.455 0.00 0.00 34.90 5.03
1884 4553 3.370978 AGTGTATGCGTGTTTACATGAGC 59.629 43.478 0.00 4.11 34.90 4.26
1885 4554 4.625311 TGAGTGTATGCGTGTTTACATGAG 59.375 41.667 0.00 0.00 34.90 2.90
1886 4555 4.561105 TGAGTGTATGCGTGTTTACATGA 58.439 39.130 0.00 0.00 34.90 3.07
1887 4556 4.919677 TGAGTGTATGCGTGTTTACATG 57.080 40.909 0.00 0.00 36.01 3.21
1888 4557 5.064707 GGATTGAGTGTATGCGTGTTTACAT 59.935 40.000 0.00 0.00 31.48 2.29
1889 4558 4.390603 GGATTGAGTGTATGCGTGTTTACA 59.609 41.667 0.00 0.00 0.00 2.41
1890 4559 4.630069 AGGATTGAGTGTATGCGTGTTTAC 59.370 41.667 0.00 0.00 0.00 2.01
1891 4560 4.827692 AGGATTGAGTGTATGCGTGTTTA 58.172 39.130 0.00 0.00 0.00 2.01
1892 4561 3.674997 AGGATTGAGTGTATGCGTGTTT 58.325 40.909 0.00 0.00 0.00 2.83
1893 4562 3.334583 AGGATTGAGTGTATGCGTGTT 57.665 42.857 0.00 0.00 0.00 3.32
1894 4563 4.099419 TCATAGGATTGAGTGTATGCGTGT 59.901 41.667 0.00 0.00 0.00 4.49
1895 4564 4.620982 TCATAGGATTGAGTGTATGCGTG 58.379 43.478 0.00 0.00 0.00 5.34
1896 4565 4.937201 TCATAGGATTGAGTGTATGCGT 57.063 40.909 0.00 0.00 0.00 5.24
1897 4566 4.148871 CGTTCATAGGATTGAGTGTATGCG 59.851 45.833 0.00 0.00 0.00 4.73
1898 4567 4.084328 GCGTTCATAGGATTGAGTGTATGC 60.084 45.833 0.00 0.00 0.00 3.14
1899 4568 5.049828 TGCGTTCATAGGATTGAGTGTATG 58.950 41.667 0.00 0.00 0.00 2.39
1900 4569 5.050490 GTGCGTTCATAGGATTGAGTGTAT 58.950 41.667 0.00 0.00 0.00 2.29
1901 4570 4.081917 TGTGCGTTCATAGGATTGAGTGTA 60.082 41.667 0.00 0.00 0.00 2.90
1902 4571 3.262420 GTGCGTTCATAGGATTGAGTGT 58.738 45.455 0.00 0.00 0.00 3.55
1903 4572 3.261580 TGTGCGTTCATAGGATTGAGTG 58.738 45.455 0.00 0.00 0.00 3.51
1904 4573 3.610040 TGTGCGTTCATAGGATTGAGT 57.390 42.857 0.00 0.00 0.00 3.41
1905 4574 3.303593 GCATGTGCGTTCATAGGATTGAG 60.304 47.826 0.00 0.00 0.00 3.02
1906 4575 2.613595 GCATGTGCGTTCATAGGATTGA 59.386 45.455 0.00 0.00 0.00 2.57
1907 4576 2.990941 GCATGTGCGTTCATAGGATTG 58.009 47.619 0.00 0.00 0.00 2.67
1920 4589 2.745884 TAGGGTGTGCGCATGTGC 60.746 61.111 24.25 24.25 37.78 4.57
1921 4590 2.398554 GGTAGGGTGTGCGCATGTG 61.399 63.158 15.91 0.66 0.00 3.21
1922 4591 2.046314 GGTAGGGTGTGCGCATGT 60.046 61.111 15.91 0.00 0.00 3.21
1923 4592 1.815421 GAGGTAGGGTGTGCGCATG 60.815 63.158 15.91 0.00 0.00 4.06
1924 4593 1.961180 GAGAGGTAGGGTGTGCGCAT 61.961 60.000 15.91 0.00 0.00 4.73
1925 4594 2.603473 AGAGGTAGGGTGTGCGCA 60.603 61.111 5.66 5.66 0.00 6.09
1926 4595 2.184579 GAGAGGTAGGGTGTGCGC 59.815 66.667 0.00 0.00 0.00 6.09
1927 4596 0.965866 TCAGAGAGGTAGGGTGTGCG 60.966 60.000 0.00 0.00 0.00 5.34
1928 4597 0.820871 CTCAGAGAGGTAGGGTGTGC 59.179 60.000 0.00 0.00 0.00 4.57
1929 4598 0.820871 GCTCAGAGAGGTAGGGTGTG 59.179 60.000 0.00 0.00 0.00 3.82
1930 4599 0.409876 TGCTCAGAGAGGTAGGGTGT 59.590 55.000 0.00 0.00 0.00 4.16
1931 4600 0.820871 GTGCTCAGAGAGGTAGGGTG 59.179 60.000 0.00 0.00 0.00 4.61
1932 4601 0.409876 TGTGCTCAGAGAGGTAGGGT 59.590 55.000 0.00 0.00 0.00 4.34
1933 4602 1.686052 GATGTGCTCAGAGAGGTAGGG 59.314 57.143 0.00 0.00 0.00 3.53
1934 4603 1.686052 GGATGTGCTCAGAGAGGTAGG 59.314 57.143 0.00 0.00 0.00 3.18
1935 4604 1.336440 CGGATGTGCTCAGAGAGGTAG 59.664 57.143 0.00 0.00 0.00 3.18
1936 4605 1.064685 TCGGATGTGCTCAGAGAGGTA 60.065 52.381 0.00 0.00 0.00 3.08
1937 4606 0.323816 TCGGATGTGCTCAGAGAGGT 60.324 55.000 0.00 0.00 0.00 3.85
1938 4607 0.385029 CTCGGATGTGCTCAGAGAGG 59.615 60.000 0.00 0.00 45.81 3.69
1939 4608 1.387539 TCTCGGATGTGCTCAGAGAG 58.612 55.000 0.00 10.01 46.25 3.20
1941 4610 1.065401 GTCTCTCGGATGTGCTCAGAG 59.935 57.143 0.00 0.00 44.72 3.35
1942 4611 1.098869 GTCTCTCGGATGTGCTCAGA 58.901 55.000 0.00 0.00 0.00 3.27
1943 4612 0.102120 GGTCTCTCGGATGTGCTCAG 59.898 60.000 0.00 0.00 0.00 3.35
1944 4613 1.657751 CGGTCTCTCGGATGTGCTCA 61.658 60.000 0.00 0.00 0.00 4.26
1945 4614 1.064946 CGGTCTCTCGGATGTGCTC 59.935 63.158 0.00 0.00 0.00 4.26
1946 4615 0.965866 TTCGGTCTCTCGGATGTGCT 60.966 55.000 0.00 0.00 0.00 4.40
1947 4616 0.103208 ATTCGGTCTCTCGGATGTGC 59.897 55.000 0.00 0.00 0.00 4.57
1948 4617 1.598183 CGATTCGGTCTCTCGGATGTG 60.598 57.143 0.00 0.00 0.00 3.21
1949 4618 0.663688 CGATTCGGTCTCTCGGATGT 59.336 55.000 0.00 0.00 0.00 3.06
1950 4619 3.463574 CGATTCGGTCTCTCGGATG 57.536 57.895 0.00 0.00 0.00 3.51
1962 4631 2.669924 CTCATGATGGTATGCCGATTCG 59.330 50.000 0.00 0.00 37.67 3.34
1963 4632 3.930336 TCTCATGATGGTATGCCGATTC 58.070 45.455 0.00 0.00 37.67 2.52
1964 4633 4.564782 ATCTCATGATGGTATGCCGATT 57.435 40.909 0.00 0.00 37.67 3.34
1965 4634 4.564782 AATCTCATGATGGTATGCCGAT 57.435 40.909 0.00 0.00 37.67 4.18
1966 4635 4.356405 AAATCTCATGATGGTATGCCGA 57.644 40.909 0.00 0.00 37.67 5.54
1967 4636 5.702670 AGTAAAATCTCATGATGGTATGCCG 59.297 40.000 0.00 0.00 37.67 5.69
1968 4637 8.621532 TTAGTAAAATCTCATGATGGTATGCC 57.378 34.615 0.00 0.00 32.44 4.40
1980 4649 7.009815 CGCTTACGGTGATTTAGTAAAATCTCA 59.990 37.037 11.06 0.00 42.99 3.27
1981 4650 7.335491 CGCTTACGGTGATTTAGTAAAATCTC 58.665 38.462 11.06 7.94 42.34 2.75
1982 4651 6.238022 GCGCTTACGGTGATTTAGTAAAATCT 60.238 38.462 0.00 0.00 44.05 2.40
1983 4652 5.900242 GCGCTTACGGTGATTTAGTAAAATC 59.100 40.000 0.00 4.30 44.02 2.17
1984 4653 5.220719 GGCGCTTACGGTGATTTAGTAAAAT 60.221 40.000 7.64 0.00 40.57 1.82
1985 4654 4.093261 GGCGCTTACGGTGATTTAGTAAAA 59.907 41.667 7.64 0.00 40.57 1.52
1986 4655 3.618150 GGCGCTTACGGTGATTTAGTAAA 59.382 43.478 7.64 0.00 40.57 2.01
1987 4656 3.119029 AGGCGCTTACGGTGATTTAGTAA 60.119 43.478 7.64 0.00 40.57 2.24
1988 4657 2.428171 AGGCGCTTACGGTGATTTAGTA 59.572 45.455 7.64 0.00 40.57 1.82
1989 4658 1.206371 AGGCGCTTACGGTGATTTAGT 59.794 47.619 7.64 0.00 40.57 2.24
1990 4659 1.859080 GAGGCGCTTACGGTGATTTAG 59.141 52.381 7.64 0.00 40.57 1.85
1991 4660 1.799917 CGAGGCGCTTACGGTGATTTA 60.800 52.381 7.64 0.00 40.57 1.40
1992 4661 1.082117 CGAGGCGCTTACGGTGATTT 61.082 55.000 7.64 0.00 40.57 2.17
1993 4662 1.518572 CGAGGCGCTTACGGTGATT 60.519 57.895 7.64 0.00 40.57 2.57
1994 4663 1.378882 TACGAGGCGCTTACGGTGAT 61.379 55.000 20.18 6.84 40.57 3.06
1995 4664 1.985447 CTACGAGGCGCTTACGGTGA 61.985 60.000 20.18 8.59 40.57 4.02
1996 4665 1.585521 CTACGAGGCGCTTACGGTG 60.586 63.158 20.18 11.48 40.57 4.94
1997 4666 1.986575 GACTACGAGGCGCTTACGGT 61.987 60.000 20.18 10.00 40.57 4.83
1998 4667 1.298190 GACTACGAGGCGCTTACGG 60.298 63.158 20.18 5.08 40.57 4.02
1999 4668 1.650536 CGACTACGAGGCGCTTACG 60.651 63.158 7.64 13.32 41.27 3.18
2000 4669 4.281946 CGACTACGAGGCGCTTAC 57.718 61.111 7.64 0.00 41.27 2.34
2019 4688 2.792599 CGGGAGGAGACGTCTTCG 59.207 66.667 21.08 14.25 43.34 3.79
2020 4689 0.747283 TAGCGGGAGGAGACGTCTTC 60.747 60.000 21.08 18.81 0.00 2.87
2021 4690 0.323178 TTAGCGGGAGGAGACGTCTT 60.323 55.000 21.08 4.10 0.00 3.01
2022 4691 0.323178 TTTAGCGGGAGGAGACGTCT 60.323 55.000 20.18 20.18 0.00 4.18
2023 4692 0.529378 TTTTAGCGGGAGGAGACGTC 59.471 55.000 7.70 7.70 0.00 4.34
2024 4693 1.192428 ATTTTAGCGGGAGGAGACGT 58.808 50.000 0.00 0.00 0.00 4.34
2025 4694 2.311124 AATTTTAGCGGGAGGAGACG 57.689 50.000 0.00 0.00 0.00 4.18
2026 4695 3.128764 CCAAAATTTTAGCGGGAGGAGAC 59.871 47.826 2.44 0.00 0.00 3.36
2027 4696 3.009695 TCCAAAATTTTAGCGGGAGGAGA 59.990 43.478 2.44 0.00 0.00 3.71
2028 4697 3.352648 TCCAAAATTTTAGCGGGAGGAG 58.647 45.455 2.44 0.00 0.00 3.69
2029 4698 3.443145 TCCAAAATTTTAGCGGGAGGA 57.557 42.857 2.44 1.57 0.00 3.71
2030 4699 4.529109 TTTCCAAAATTTTAGCGGGAGG 57.471 40.909 2.44 0.00 0.00 4.30
2031 4700 5.538118 ACTTTTCCAAAATTTTAGCGGGAG 58.462 37.500 2.44 3.90 0.00 4.30
2032 4701 5.538849 ACTTTTCCAAAATTTTAGCGGGA 57.461 34.783 2.44 3.41 0.00 5.14
2033 4702 5.525745 ACAACTTTTCCAAAATTTTAGCGGG 59.474 36.000 2.44 0.86 0.00 6.13
2034 4703 6.256757 TCACAACTTTTCCAAAATTTTAGCGG 59.743 34.615 2.44 1.23 0.00 5.52
2035 4704 7.010091 AGTCACAACTTTTCCAAAATTTTAGCG 59.990 33.333 2.44 0.00 28.74 4.26
2036 4705 8.116136 CAGTCACAACTTTTCCAAAATTTTAGC 58.884 33.333 2.44 0.00 31.71 3.09
2037 4706 9.364989 TCAGTCACAACTTTTCCAAAATTTTAG 57.635 29.630 2.44 0.00 31.71 1.85
2038 4707 9.883142 ATCAGTCACAACTTTTCCAAAATTTTA 57.117 25.926 2.44 0.00 31.71 1.52
2039 4708 8.791327 ATCAGTCACAACTTTTCCAAAATTTT 57.209 26.923 0.00 0.00 31.71 1.82
2051 4720 5.282055 TCTCTGTCAATCAGTCACAACTT 57.718 39.130 0.00 0.00 43.97 2.66
2133 4838 0.250684 TCCAAAGCCGCACTGATTGA 60.251 50.000 0.00 0.00 0.00 2.57
2144 4849 1.366854 GGATCGAACGGTCCAAAGCC 61.367 60.000 19.66 0.00 34.57 4.35
2153 4858 2.104331 CCGGAGTGGATCGAACGG 59.896 66.667 0.00 3.16 42.00 4.44
2275 4980 2.348872 CGCAACTGACACTGACATGAAC 60.349 50.000 0.00 0.00 0.00 3.18
2345 5051 3.501445 GCAAGATGCTTGGTCATATCTCC 59.499 47.826 9.01 0.00 40.96 3.71
2379 5085 2.224621 ACACACAAGAAGACCCCATCAG 60.225 50.000 0.00 0.00 0.00 2.90
2399 5112 6.743172 GTCTTTCTCAACAAAAGAACAGACAC 59.257 38.462 15.41 0.00 42.63 3.67
2401 5114 5.960105 CGTCTTTCTCAACAAAAGAACAGAC 59.040 40.000 0.24 12.80 42.63 3.51
2403 5116 5.869350 ACGTCTTTCTCAACAAAAGAACAG 58.131 37.500 0.24 0.00 42.63 3.16
2405 5118 6.108097 AGACGTCTTTCTCAACAAAAGAAC 57.892 37.500 13.58 0.00 42.63 3.01
2411 5124 4.250464 ACACAAGACGTCTTTCTCAACAA 58.750 39.130 27.79 0.00 33.11 2.83
2412 5125 3.857052 ACACAAGACGTCTTTCTCAACA 58.143 40.909 27.79 0.00 33.11 3.33
2413 5126 6.526566 AATACACAAGACGTCTTTCTCAAC 57.473 37.500 27.79 0.00 33.11 3.18
2447 5162 0.951040 CCTCCTTCACGGTCACTTGC 60.951 60.000 0.00 0.00 0.00 4.01
2517 5232 7.880160 TGGTGTCTTCCAAGGATAAATATTG 57.120 36.000 0.00 0.00 34.24 1.90
2528 5243 4.062293 TCGTTGTTATGGTGTCTTCCAAG 58.938 43.478 0.00 0.00 41.09 3.61
2531 5246 4.514066 AGTTTCGTTGTTATGGTGTCTTCC 59.486 41.667 0.00 0.00 0.00 3.46
2569 5284 6.213397 CCAACTTTCCCCCTTTCAAATAGATT 59.787 38.462 0.00 0.00 0.00 2.40
2575 5290 3.123392 ACCAACTTTCCCCCTTTCAAA 57.877 42.857 0.00 0.00 0.00 2.69
2577 5292 4.156477 CAATACCAACTTTCCCCCTTTCA 58.844 43.478 0.00 0.00 0.00 2.69
2578 5293 3.513912 CCAATACCAACTTTCCCCCTTTC 59.486 47.826 0.00 0.00 0.00 2.62
2581 5300 1.273041 GCCAATACCAACTTTCCCCCT 60.273 52.381 0.00 0.00 0.00 4.79
2586 5305 3.513515 TCCCATTGCCAATACCAACTTTC 59.486 43.478 0.00 0.00 0.00 2.62
2609 5328 5.621193 TCCCTTCGTTTCTTCTCTTTTGAT 58.379 37.500 0.00 0.00 0.00 2.57
2610 5329 5.031066 TCCCTTCGTTTCTTCTCTTTTGA 57.969 39.130 0.00 0.00 0.00 2.69
2611 5330 4.319839 GCTCCCTTCGTTTCTTCTCTTTTG 60.320 45.833 0.00 0.00 0.00 2.44
2612 5331 3.815962 GCTCCCTTCGTTTCTTCTCTTTT 59.184 43.478 0.00 0.00 0.00 2.27
2613 5332 3.181454 TGCTCCCTTCGTTTCTTCTCTTT 60.181 43.478 0.00 0.00 0.00 2.52
2614 5333 2.368875 TGCTCCCTTCGTTTCTTCTCTT 59.631 45.455 0.00 0.00 0.00 2.85
2615 5334 1.971357 TGCTCCCTTCGTTTCTTCTCT 59.029 47.619 0.00 0.00 0.00 3.10
2616 5335 2.070028 GTGCTCCCTTCGTTTCTTCTC 58.930 52.381 0.00 0.00 0.00 2.87
2617 5336 1.270893 GGTGCTCCCTTCGTTTCTTCT 60.271 52.381 0.00 0.00 0.00 2.85
2618 5337 1.157585 GGTGCTCCCTTCGTTTCTTC 58.842 55.000 0.00 0.00 0.00 2.87
2619 5338 0.602905 CGGTGCTCCCTTCGTTTCTT 60.603 55.000 0.00 0.00 0.00 2.52
2620 5339 1.004918 CGGTGCTCCCTTCGTTTCT 60.005 57.895 0.00 0.00 0.00 2.52
2621 5340 1.005394 TCGGTGCTCCCTTCGTTTC 60.005 57.895 0.00 0.00 0.00 2.78
2622 5341 1.004918 CTCGGTGCTCCCTTCGTTT 60.005 57.895 0.00 0.00 0.00 3.60
2623 5342 2.657237 CTCGGTGCTCCCTTCGTT 59.343 61.111 0.00 0.00 0.00 3.85
2624 5343 4.070552 GCTCGGTGCTCCCTTCGT 62.071 66.667 0.00 0.00 38.95 3.85
2625 5344 4.821589 GGCTCGGTGCTCCCTTCG 62.822 72.222 0.00 0.00 42.39 3.79
2626 5345 3.378399 GAGGCTCGGTGCTCCCTTC 62.378 68.421 0.00 0.00 42.39 3.46
2627 5346 3.394836 GAGGCTCGGTGCTCCCTT 61.395 66.667 0.00 0.00 42.39 3.95
2630 5349 3.844090 GAGGAGGCTCGGTGCTCC 61.844 72.222 8.69 7.11 42.39 4.70
2631 5350 3.071206 TGAGGAGGCTCGGTGCTC 61.071 66.667 8.69 9.75 42.39 4.26
2632 5351 3.073735 CTGAGGAGGCTCGGTGCT 61.074 66.667 8.69 0.00 42.39 4.40
2633 5352 3.071206 TCTGAGGAGGCTCGGTGC 61.071 66.667 8.69 0.00 41.94 5.01
2634 5353 3.074999 GCTCTGAGGAGGCTCGGTG 62.075 68.421 8.69 0.00 39.80 4.94
2635 5354 2.757917 GCTCTGAGGAGGCTCGGT 60.758 66.667 8.69 0.00 39.80 4.69
2636 5355 2.441901 AGCTCTGAGGAGGCTCGG 60.442 66.667 8.69 0.00 39.80 4.63
2637 5356 1.727511 CTGAGCTCTGAGGAGGCTCG 61.728 65.000 16.19 0.00 41.31 5.03
2638 5357 0.395586 TCTGAGCTCTGAGGAGGCTC 60.396 60.000 18.39 5.78 40.13 4.70
2639 5358 0.396139 CTCTGAGCTCTGAGGAGGCT 60.396 60.000 32.29 0.00 39.80 4.58
2640 5359 2.019897 GCTCTGAGCTCTGAGGAGGC 62.020 65.000 36.86 26.04 40.79 4.70
2641 5360 0.683828 TGCTCTGAGCTCTGAGGAGG 60.684 60.000 36.86 21.84 42.97 4.30
2642 5361 1.405872 ATGCTCTGAGCTCTGAGGAG 58.594 55.000 36.86 26.38 43.11 3.69
2643 5362 2.744352 TATGCTCTGAGCTCTGAGGA 57.256 50.000 36.86 36.02 42.97 3.71
2644 5363 2.028839 CCATATGCTCTGAGCTCTGAGG 60.029 54.545 36.86 25.16 42.97 3.86
2645 5364 2.028839 CCCATATGCTCTGAGCTCTGAG 60.029 54.545 34.33 34.33 42.97 3.35
2646 5365 1.969208 CCCATATGCTCTGAGCTCTGA 59.031 52.381 28.04 20.62 42.97 3.27
2647 5366 1.608542 GCCCATATGCTCTGAGCTCTG 60.609 57.143 28.04 20.70 42.97 3.35
2648 5367 0.686224 GCCCATATGCTCTGAGCTCT 59.314 55.000 28.04 18.21 42.97 4.09
2649 5368 0.321475 GGCCCATATGCTCTGAGCTC 60.321 60.000 28.04 6.82 42.97 4.09
2650 5369 1.759881 GGCCCATATGCTCTGAGCT 59.240 57.895 28.04 16.73 42.97 4.09
2651 5370 1.670406 CGGCCCATATGCTCTGAGC 60.670 63.158 22.38 22.38 42.82 4.26
2652 5371 0.320247 GACGGCCCATATGCTCTGAG 60.320 60.000 0.00 0.00 0.00 3.35
2653 5372 1.748403 GACGGCCCATATGCTCTGA 59.252 57.895 0.00 0.00 0.00 3.27
2654 5373 1.302033 GGACGGCCCATATGCTCTG 60.302 63.158 0.00 0.00 34.14 3.35
2655 5374 2.872388 CGGACGGCCCATATGCTCT 61.872 63.158 0.00 0.00 34.14 4.09
2656 5375 2.172483 ATCGGACGGCCCATATGCTC 62.172 60.000 0.00 0.00 34.14 4.26
2657 5376 2.172483 GATCGGACGGCCCATATGCT 62.172 60.000 0.00 0.00 34.14 3.79
2658 5377 1.741770 GATCGGACGGCCCATATGC 60.742 63.158 0.00 0.00 34.14 3.14
2659 5378 0.108615 GAGATCGGACGGCCCATATG 60.109 60.000 0.00 0.00 34.14 1.78
2660 5379 1.595993 CGAGATCGGACGGCCCATAT 61.596 60.000 0.00 0.00 35.37 1.78
2661 5380 2.265904 CGAGATCGGACGGCCCATA 61.266 63.158 0.00 0.00 35.37 2.74
2662 5381 3.606662 CGAGATCGGACGGCCCAT 61.607 66.667 0.00 0.00 35.37 4.00
2664 5383 3.769875 GAACGAGATCGGACGGCCC 62.770 68.421 0.00 0.00 44.95 5.80
2665 5384 2.278661 GAACGAGATCGGACGGCC 60.279 66.667 0.00 0.00 44.95 6.13
2666 5385 2.278661 GGAACGAGATCGGACGGC 60.279 66.667 7.22 0.00 44.95 5.68
2667 5386 1.064296 CAGGAACGAGATCGGACGG 59.936 63.158 7.22 0.00 44.95 4.79
2668 5387 0.663688 ATCAGGAACGAGATCGGACG 59.336 55.000 7.22 8.05 44.95 4.79
2669 5388 1.866063 GCATCAGGAACGAGATCGGAC 60.866 57.143 7.22 0.24 44.95 4.79
2670 5389 0.385751 GCATCAGGAACGAGATCGGA 59.614 55.000 7.22 0.00 44.95 4.55
2671 5390 0.936764 CGCATCAGGAACGAGATCGG 60.937 60.000 7.22 0.00 44.95 4.18
2672 5391 0.248661 ACGCATCAGGAACGAGATCG 60.249 55.000 0.00 0.00 46.33 3.69
2673 5392 1.927895 AACGCATCAGGAACGAGATC 58.072 50.000 0.00 0.00 0.00 2.75
2674 5393 2.386661 AAACGCATCAGGAACGAGAT 57.613 45.000 0.00 0.00 0.00 2.75
2675 5394 2.066262 GAAAACGCATCAGGAACGAGA 58.934 47.619 0.00 0.00 0.00 4.04
2676 5395 1.201812 CGAAAACGCATCAGGAACGAG 60.202 52.381 0.00 0.00 0.00 4.18
2677 5396 0.787787 CGAAAACGCATCAGGAACGA 59.212 50.000 0.00 0.00 0.00 3.85
2678 5397 0.179225 CCGAAAACGCATCAGGAACG 60.179 55.000 0.00 0.00 0.00 3.95
2679 5398 0.454452 GCCGAAAACGCATCAGGAAC 60.454 55.000 0.00 0.00 0.00 3.62
2680 5399 1.582610 GGCCGAAAACGCATCAGGAA 61.583 55.000 0.00 0.00 0.00 3.36
2681 5400 2.038269 GGCCGAAAACGCATCAGGA 61.038 57.895 0.00 0.00 0.00 3.86
2682 5401 2.485122 GGCCGAAAACGCATCAGG 59.515 61.111 0.00 0.00 0.00 3.86
2683 5402 2.098298 CGGCCGAAAACGCATCAG 59.902 61.111 24.07 0.00 0.00 2.90
2684 5403 2.255172 AACGGCCGAAAACGCATCA 61.255 52.632 35.90 0.00 0.00 3.07
2685 5404 1.795962 CAACGGCCGAAAACGCATC 60.796 57.895 35.90 0.00 0.00 3.91
2686 5405 2.254051 CAACGGCCGAAAACGCAT 59.746 55.556 35.90 2.60 0.00 4.73
2687 5406 3.955101 CCAACGGCCGAAAACGCA 61.955 61.111 35.90 0.00 0.00 5.24
2688 5407 2.844224 GATCCAACGGCCGAAAACGC 62.844 60.000 35.90 13.09 0.00 4.84
2689 5408 1.133869 GATCCAACGGCCGAAAACG 59.866 57.895 35.90 14.33 0.00 3.60
2690 5409 1.133869 CGATCCAACGGCCGAAAAC 59.866 57.895 35.90 15.99 0.00 2.43
2691 5410 2.682876 GCGATCCAACGGCCGAAAA 61.683 57.895 35.90 14.60 0.00 2.29
2692 5411 3.122323 GCGATCCAACGGCCGAAA 61.122 61.111 35.90 14.20 0.00 3.46
2710 5429 4.309950 ACGAGGTCAACCGTGGGC 62.310 66.667 0.00 0.00 42.08 5.36
2711 5430 2.048503 GACGAGGTCAACCGTGGG 60.049 66.667 0.00 0.00 42.08 4.61
2712 5431 2.048503 GGACGAGGTCAACCGTGG 60.049 66.667 0.00 0.00 42.08 4.94
2713 5432 2.430244 CGGACGAGGTCAACCGTG 60.430 66.667 0.00 0.00 42.08 4.94
2716 5435 2.126580 CGACGGACGAGGTCAACC 60.127 66.667 0.00 0.00 45.77 3.77
2717 5436 1.930908 ATCCGACGGACGAGGTCAAC 61.931 60.000 21.02 0.00 45.77 3.18
2718 5437 0.392863 TATCCGACGGACGAGGTCAA 60.393 55.000 21.02 0.00 45.77 3.18
2719 5438 0.392863 TTATCCGACGGACGAGGTCA 60.393 55.000 21.02 0.00 45.77 4.02
2720 5439 0.734889 TTTATCCGACGGACGAGGTC 59.265 55.000 21.02 0.00 45.77 3.85
2721 5440 1.176527 TTTTATCCGACGGACGAGGT 58.823 50.000 21.02 5.32 45.77 3.85
2722 5441 1.922545 GTTTTTATCCGACGGACGAGG 59.077 52.381 21.02 1.66 45.77 4.63
2723 5442 2.597305 CAGTTTTTATCCGACGGACGAG 59.403 50.000 21.02 0.72 45.77 4.18
2724 5443 2.228582 TCAGTTTTTATCCGACGGACGA 59.771 45.455 21.02 7.57 45.77 4.20
2725 5444 2.597305 CTCAGTTTTTATCCGACGGACG 59.403 50.000 21.02 3.03 42.18 4.79
2726 5445 3.611549 GTCTCAGTTTTTATCCGACGGAC 59.388 47.826 21.02 5.82 32.98 4.79
2727 5446 3.367703 GGTCTCAGTTTTTATCCGACGGA 60.368 47.826 20.85 20.85 35.55 4.69
2728 5447 2.928116 GGTCTCAGTTTTTATCCGACGG 59.072 50.000 7.84 7.84 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.