AutoCloner

Multiple sequence alignment - TraesCS3D01G416900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G416900	chr3D	100.000	3197	0	0	1	3197	528150492	528153688	0.000000e+00	5904.0
1	TraesCS3D01G416900	chr3D	90.323	62	3	2	2320	2378	185065204	185065265	9.510000e-11	78.7
2	TraesCS3D01G416900	chr3D	89.062	64	4	3	2327	2389	35191600	35191661	3.420000e-10	76.8
3	TraesCS3D01G416900	chr3B	93.631	2355	111	18	866	3197	698408003	698410341	0.000000e+00	3482.0
4	TraesCS3D01G416900	chr3B	86.611	1195	135	16	1108	2282	442639396	442638207	0.000000e+00	1297.0
5	TraesCS3D01G416900	chr3B	90.929	463	31	5	1	456	698382502	698382960	2.110000e-171	612.0
6	TraesCS3D01G416900	chr3B	85.437	206	14	5	453	657	698383277	698383467	1.940000e-47	200.0
7	TraesCS3D01G416900	chr3B	92.500	80	5	1	2299	2378	470852026	470852104	2.610000e-21	113.0
8	TraesCS3D01G416900	chr3A	94.088	795	40	3	1	789	662710034	662710827	0.000000e+00	1201.0
9	TraesCS3D01G416900	chr3A	90.968	775	69	1	796	1570	662710988	662711761	0.000000e+00	1042.0
10	TraesCS3D01G416900	chr3A	90.146	751	52	14	2418	3153	662791633	662792376	0.000000e+00	957.0
11	TraesCS3D01G416900	chr3A	92.023	514	38	1	1568	2078	662789450	662789963	0.000000e+00	719.0
12	TraesCS3D01G416900	chr3A	93.333	135	8	1	2164	2298	662791022	662791155	7.000000e-47	198.0
13	TraesCS3D01G416900	chr4D	93.496	123	8	0	667	789	21890499	21890377	1.960000e-42	183.0
14	TraesCS3D01G416900	chr4D	91.057	123	11	0	667	789	22515721	22515843	1.970000e-37	167.0
15	TraesCS3D01G416900	chr4D	100.000	28	0	0	141	168	503749942	503749969	6.000000e-03	52.8
16	TraesCS3D01G416900	chr6B	91.870	123	10	0	667	789	457263502	457263624	4.240000e-39	172.0
17	TraesCS3D01G416900	chr5D	91.870	123	10	0	667	789	433503245	433503123	4.240000e-39	172.0
18	TraesCS3D01G416900	chr7B	92.437	119	9	0	671	789	420068116	420068234	1.520000e-38	171.0
19	TraesCS3D01G416900	chrUn	91.057	123	11	0	667	789	253394010	253394132	1.970000e-37	167.0
20	TraesCS3D01G416900	chr4B	91.057	123	11	0	667	789	562614856	562614734	1.970000e-37	167.0
21	TraesCS3D01G416900	chr4B	91.057	123	11	0	667	789	643642315	643642193	1.970000e-37	167.0
22	TraesCS3D01G416900	chr2D	90.000	80	5	2	2299	2378	114515502	114515578	2.030000e-17	100.0
23	TraesCS3D01G416900	chr2D	89.744	78	5	3	2301	2378	114515579	114515505	2.630000e-16	97.1
24	TraesCS3D01G416900	chr7D	85.542	83	10	2	2299	2380	192021210	192021129	5.680000e-13	86.1
25	TraesCS3D01G416900	chr7D	88.710	62	4	3	2329	2389	105653209	105653268	4.420000e-09	73.1
26	TraesCS3D01G416900	chr4A	78.571	126	25	2	1485	1609	624940115	624939991	7.350000e-12	82.4
27	TraesCS3D01G416900	chr6A	83.750	80	12	1	2299	2378	16075056	16074978	1.230000e-09	75.0
28	TraesCS3D01G416900	chr1A	100.000	28	0	0	141	168	584994002	584994029	6.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G416900	chr3D	528150492	528153688	3196	False	5904.000000	5904	100.000	1	3197	1	chr3D.!!$F3	3196
1	TraesCS3D01G416900	chr3B	698408003	698410341	2338	False	3482.000000	3482	93.631	866	3197	1	chr3B.!!$F2	2331
2	TraesCS3D01G416900	chr3B	442638207	442639396	1189	True	1297.000000	1297	86.611	1108	2282	1	chr3B.!!$R1	1174
3	TraesCS3D01G416900	chr3B	698382502	698383467	965	False	406.000000	612	88.183	1	657	2	chr3B.!!$F3	656
4	TraesCS3D01G416900	chr3A	662710034	662711761	1727	False	1121.500000	1201	92.528	1	1570	2	chr3A.!!$F1	1569
5	TraesCS3D01G416900	chr3A	662789450	662792376	2926	False	624.666667	957	91.834	1568	3153	3	chr3A.!!$F2	1585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
925	1418	0.034337	TTCACCTTTTCCCCGTCTCG	59.966	55.0	0.0	0.0	0.0	4.04	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2288	3778	0.036306	GCGGAGGGAGGAACTGAAAA	59.964	55.0	0.0	0.0	41.55	2.29	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
67	73	4.764823	TCCAACTCCACCACAATTATTGAC	59.235	41.667	12.28	0.00	0.00	3.18
194	200	1.743394	GGGCTAAAACATTCACGGGAG	59.257	52.381	0.00	0.00	0.00	4.30
335	342	2.209838	ATAAGCACACGTCCATCGAG	57.790	50.000	0.00	0.00	42.86	4.04
436	443	2.753701	CCCATGTCCACGAACCCA	59.246	61.111	0.00	0.00	0.00	4.51
466	793	5.126869	CCCATGATGGCTTAAAACACACATA	59.873	40.000	5.79	0.00	35.79	2.29
516	843	1.371467	TGGGACATGGATCTGGTGTT	58.629	50.000	0.00	0.00	0.00	3.32
558	885	0.749091	CTCTTCATCCATGGCGGCAA	60.749	55.000	18.31	0.00	33.14	4.52
564	891	1.913951	ATCCATGGCGGCAACAGAGA	61.914	55.000	18.31	8.97	33.14	3.10
595	922	9.958180	TGTAAATTTGAGATGGAGATTTGAGTA	57.042	29.630	0.00	0.00	0.00	2.59
600	927	9.790344	ATTTGAGATGGAGATTTGAGTAATAGG	57.210	33.333	0.00	0.00	0.00	2.57
601	928	7.308450	TGAGATGGAGATTTGAGTAATAGGG	57.692	40.000	0.00	0.00	0.00	3.53
602	929	6.846505	TGAGATGGAGATTTGAGTAATAGGGT	59.153	38.462	0.00	0.00	0.00	4.34
603	930	7.072263	AGATGGAGATTTGAGTAATAGGGTG	57.928	40.000	0.00	0.00	0.00	4.61
604	931	5.036117	TGGAGATTTGAGTAATAGGGTGC	57.964	43.478	0.00	0.00	0.00	5.01
605	932	4.058817	GGAGATTTGAGTAATAGGGTGCG	58.941	47.826	0.00	0.00	0.00	5.34
606	933	4.058817	GAGATTTGAGTAATAGGGTGCGG	58.941	47.826	0.00	0.00	0.00	5.69
607	934	2.702592	TTTGAGTAATAGGGTGCGGG	57.297	50.000	0.00	0.00	0.00	6.13
608	935	1.868713	TTGAGTAATAGGGTGCGGGA	58.131	50.000	0.00	0.00	0.00	5.14
609	936	1.410004	TGAGTAATAGGGTGCGGGAG	58.590	55.000	0.00	0.00	0.00	4.30
629	968	2.665000	GGACTGCTGGCTAGTGCA	59.335	61.111	0.00	6.93	41.91	4.57
653	992	0.811616	CAGCACTACGGGCAAGGATC	60.812	60.000	0.00	0.00	0.00	3.36
698	1037	2.092914	GGTTGGATGGTTAGAGGGACTG	60.093	54.545	0.00	0.00	41.55	3.51
715	1054	0.394352	CTGTGGTATCCCCAGCCAAC	60.394	60.000	0.00	0.00	46.45	3.77
716	1055	1.076995	GTGGTATCCCCAGCCAACC	60.077	63.158	0.00	0.00	46.45	3.77
719	1058	1.279025	GGTATCCCCAGCCAACCAGA	61.279	60.000	0.00	0.00	0.00	3.86
730	1069	1.897560	CCAACCAGAGTTCAAGTCCC	58.102	55.000	0.00	0.00	32.45	4.46
747	1086	0.738389	CCCGGTGCTCGCATTTATTT	59.262	50.000	0.00	0.00	37.59	1.40
748	1087	1.268539	CCCGGTGCTCGCATTTATTTC	60.269	52.381	0.00	0.00	37.59	2.17
750	1089	2.869801	CCGGTGCTCGCATTTATTTCTA	59.130	45.455	0.00	0.00	37.59	2.10
772	1111	8.073355	TCTAGATTTATTTCTCGATTTTCGGC	57.927	34.615	0.00	0.00	40.88	5.54
777	1116	2.004583	TTCTCGATTTTCGGCGATGT	57.995	45.000	11.76	0.00	40.88	3.06
789	1128	1.226491	GCGATGTGCATTCAGTGGC	60.226	57.895	0.00	0.00	45.45	5.01
791	1130	0.736636	CGATGTGCATTCAGTGGCAT	59.263	50.000	0.00	0.00	42.75	4.40
793	1132	1.475280	GATGTGCATTCAGTGGCATGT	59.525	47.619	0.00	0.00	42.75	3.21
797	1290	2.424601	GTGCATTCAGTGGCATGTGTAT	59.575	45.455	0.00	0.00	42.75	2.29
801	1294	4.665212	CATTCAGTGGCATGTGTATTGTC	58.335	43.478	0.00	0.00	0.00	3.18
807	1300	4.456911	AGTGGCATGTGTATTGTCTTCAAG	59.543	41.667	0.00	0.00	36.97	3.02
830	1323	0.175989	GACTGAGATGGAACGGGGAC	59.824	60.000	0.00	0.00	0.00	4.46
883	1376	5.990996	CCATGAAATACCACTTGTTTTTGCT	59.009	36.000	0.00	0.00	29.68	3.91
898	1391	2.811317	GCTTGGTCAGTCCTCGCG	60.811	66.667	0.00	0.00	37.07	5.87
906	1399	1.153823	CAGTCCTCGCGTCCGATTT	60.154	57.895	5.77	0.00	43.47	2.17
925	1418	0.034337	TTCACCTTTTCCCCGTCTCG	59.966	55.000	0.00	0.00	0.00	4.04
974	1468	3.520862	CCGCAATCCCGCTGCAAT	61.521	61.111	0.00	0.00	39.91	3.56
1233	1736	1.738346	CGATCCCAGGACATCTCGCA	61.738	60.000	0.00	0.00	0.00	5.10
1344	1847	0.694444	ACTATGGCCCCGAGACCATT	60.694	55.000	0.00	0.00	44.37	3.16
1390	1893	3.680920	ATCCCGGGACCGAAGCTCT	62.681	63.158	29.69	2.68	42.83	4.09
1407	1910	2.528797	CTTGTCGACCAAGTTCCGG	58.471	57.895	14.12	0.00	44.64	5.14
1410	1913	4.011517	TCGACCAAGTTCCGGCCC	62.012	66.667	0.00	0.00	0.00	5.80
1464	1967	0.108186	TGACACGTGATCCTGCCATC	60.108	55.000	25.01	6.30	0.00	3.51
1500	2003	2.047179	GTGCCCTGGTTCGAGGTC	60.047	66.667	0.00	0.00	0.00	3.85
1643	2146	0.606673	GTCTGGGTCAGGTCCTTTGC	60.607	60.000	0.00	0.00	31.51	3.68
1723	2226	1.004044	ACTTGGAGACAGAGCAATGGG	59.996	52.381	0.00	0.00	44.54	4.00
1824	2327	2.097466	CGCCAAAAAGATCACCGCTTAT	59.903	45.455	0.00	0.00	0.00	1.73
1827	2330	5.273944	GCCAAAAAGATCACCGCTTATAAG	58.726	41.667	8.20	8.20	0.00	1.73
1893	2396	1.106285	GGTGCCCATCCTTGTCAATC	58.894	55.000	0.00	0.00	0.00	2.67
2050	2553	2.549992	CGGGAACTTGTCACCATGAGAA	60.550	50.000	0.00	0.00	0.00	2.87
2057	2560	3.245518	TGTCACCATGAGAACATACGG	57.754	47.619	0.00	0.00	35.09	4.02
2100	3168	2.158900	CCACCTCAAGTCTATTCGCCAT	60.159	50.000	0.00	0.00	0.00	4.40
2307	3797	0.036306	TTTTCAGTTCCTCCCTCCGC	59.964	55.000	0.00	0.00	0.00	5.54
2322	3812	3.325135	CCCTCCGCTTCCATATTAGTTCT	59.675	47.826	0.00	0.00	0.00	3.01
2323	3813	4.561105	CCTCCGCTTCCATATTAGTTCTC	58.439	47.826	0.00	0.00	0.00	2.87
2324	3814	4.561105	CTCCGCTTCCATATTAGTTCTCC	58.439	47.826	0.00	0.00	0.00	3.71
2340	3830	6.051179	AGTTCTCCCTGATTTAGTACAACC	57.949	41.667	0.00	0.00	0.00	3.77
2379	3869	5.928839	CGACAACTAATATGGAATGGAGGAG	59.071	44.000	0.00	0.00	0.00	3.69
2380	3870	5.625150	ACAACTAATATGGAATGGAGGAGC	58.375	41.667	0.00	0.00	0.00	4.70
2535	4459	6.183360	CCATATACAAACAGAAAACCGTACCC	60.183	42.308	0.00	0.00	0.00	3.69
2554	4486	1.613520	CCCGACCCTTCTTTTTCTCCC	60.614	57.143	0.00	0.00	0.00	4.30
2595	4527	3.059603	CGTTGGGGACGTTATCTGG	57.940	57.895	0.00	0.00	46.49	3.86
2619	4551	4.322385	GCGTTGGTTGCCGTCCAC	62.322	66.667	0.00	0.00	34.45	4.02
2631	4563	2.158959	CGTCCACTTTCCTAGCGCG	61.159	63.158	0.00	0.00	0.00	6.86
2689	4621	5.731591	TCAGACTCGTTCACTATAGACAGA	58.268	41.667	6.78	0.00	0.00	3.41
3002	4947	7.416964	TTTTTATTGTAGGTAGCATGGCAAT	57.583	32.000	0.00	2.17	0.00	3.56
3179	5129	7.769970	ACATGGCATTTTATTGTTAAAGGATGG	59.230	33.333	0.00	0.00	0.00	3.51
3180	5130	6.112058	TGGCATTTTATTGTTAAAGGATGGC	58.888	36.000	0.00	0.00	39.34	4.40
3186	5136	9.791801	ATTTTATTGTTAAAGGATGGCAGTTTT	57.208	25.926	0.00	0.00	0.00	2.43

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
67	73	5.762711	TGAGAGGATGATTCTAGAAGACTCG	59.237	44.000	11.53	0.00	27.62	4.18
194	200	3.066900	TGCTTAGCTATTCTGACGAGGTC	59.933	47.826	5.60	0.00	0.00	3.85
335	342	9.835315	CACGCGATTATTGATTATGTATATGTC	57.165	33.333	15.93	0.00	0.00	3.06
357	364	2.531206	TGTAGGTTTGTTTTTGCACGC	58.469	42.857	0.00	0.00	0.00	5.34
516	843	1.902508	GAGTGTTGGAGATGTGAGGGA	59.097	52.381	0.00	0.00	0.00	4.20
558	885	3.997021	CTCAAATTTACACCGCTCTCTGT	59.003	43.478	0.00	0.00	0.00	3.41
564	891	3.941483	CTCCATCTCAAATTTACACCGCT	59.059	43.478	0.00	0.00	0.00	5.52
595	922	3.861797	CCGCTCCCGCACCCTATT	61.862	66.667	0.00	0.00	35.30	1.73
607	934	3.438017	CTAGCCAGCAGTCCCGCTC	62.438	68.421	0.00	0.00	41.38	5.03
608	935	3.465403	CTAGCCAGCAGTCCCGCT	61.465	66.667	0.00	0.00	45.21	5.52
609	936	3.775654	ACTAGCCAGCAGTCCCGC	61.776	66.667	0.00	0.00	0.00	6.13
610	937	2.185350	CACTAGCCAGCAGTCCCG	59.815	66.667	0.00	0.00	0.00	5.14
653	992	1.753073	AGTTCGTTACCGTCCCCATAG	59.247	52.381	0.00	0.00	35.01	2.23
669	1008	4.394729	TCTAACCATCCAACCACAAGTTC	58.605	43.478	0.00	0.00	36.18	3.01
672	1011	3.347216	CCTCTAACCATCCAACCACAAG	58.653	50.000	0.00	0.00	0.00	3.16
673	1012	2.041081	CCCTCTAACCATCCAACCACAA	59.959	50.000	0.00	0.00	0.00	3.33
708	1047	1.876156	GACTTGAACTCTGGTTGGCTG	59.124	52.381	0.00	0.00	35.58	4.85
715	1054	0.320771	CACCGGGACTTGAACTCTGG	60.321	60.000	6.32	0.00	0.00	3.86
716	1055	0.951040	GCACCGGGACTTGAACTCTG	60.951	60.000	6.32	0.00	0.00	3.35
719	1058	1.371558	GAGCACCGGGACTTGAACT	59.628	57.895	6.32	0.00	0.00	3.01
730	1069	3.802139	TCTAGAAATAAATGCGAGCACCG	59.198	43.478	0.00	0.00	42.21	4.94
747	1086	7.096189	CGCCGAAAATCGAGAAATAAATCTAGA	60.096	37.037	0.00	0.00	43.74	2.43
748	1087	7.004225	CGCCGAAAATCGAGAAATAAATCTAG	58.996	38.462	0.58	0.00	43.74	2.43
750	1089	5.522460	TCGCCGAAAATCGAGAAATAAATCT	59.478	36.000	0.58	0.00	43.74	2.40
761	1100	1.016653	TGCACATCGCCGAAAATCGA	61.017	50.000	0.58	0.00	39.67	3.59
762	1101	0.027979	ATGCACATCGCCGAAAATCG	59.972	50.000	0.00	0.00	41.33	3.34
772	1111	0.736636	ATGCCACTGAATGCACATCG	59.263	50.000	0.00	0.00	40.88	3.84
777	1116	2.197283	TACACATGCCACTGAATGCA	57.803	45.000	0.00	0.00	42.52	3.96
783	1122	3.752747	TGAAGACAATACACATGCCACTG	59.247	43.478	0.00	0.00	0.00	3.66
801	1294	5.574830	CGTTCCATCTCAGTCTTACTTGAAG	59.425	44.000	0.00	0.00	36.38	3.02
807	1300	2.159085	CCCCGTTCCATCTCAGTCTTAC	60.159	54.545	0.00	0.00	0.00	2.34
813	1306	1.141881	CGTCCCCGTTCCATCTCAG	59.858	63.158	0.00	0.00	0.00	3.35
830	1323	0.389166	GCGCCTGGGAGAATCTATCG	60.389	60.000	0.00	0.00	33.73	2.92
859	1352	5.990996	AGCAAAAACAAGTGGTATTTCATGG	59.009	36.000	0.00	0.00	0.00	3.66
860	1353	7.346695	CAAGCAAAAACAAGTGGTATTTCATG	58.653	34.615	0.00	0.00	0.00	3.07
863	1356	5.815222	ACCAAGCAAAAACAAGTGGTATTTC	59.185	36.000	0.00	0.00	37.60	2.17
883	1376	2.649034	GACGCGAGGACTGACCAA	59.351	61.111	15.93	0.00	42.04	3.67
898	1391	2.230508	GGGGAAAAGGTGAAAATCGGAC	59.769	50.000	0.00	0.00	0.00	4.79
906	1399	0.034337	CGAGACGGGGAAAAGGTGAA	59.966	55.000	0.00	0.00	0.00	3.18
974	1468	1.673626	GGTGCCGAGTTATGTTCCGAA	60.674	52.381	0.00	0.00	0.00	4.30
1210	1713	1.614413	GAGATGTCCTGGGATCGGTAC	59.386	57.143	0.00	0.00	0.00	3.34
1390	1893	1.595929	GCCGGAACTTGGTCGACAA	60.596	57.895	18.91	2.10	37.55	3.18
1407	1910	3.462199	GACCGGTAGCAGGATGGGC	62.462	68.421	7.34	0.00	35.86	5.36
1410	1913	2.417516	CCGACCGGTAGCAGGATG	59.582	66.667	7.34	0.00	40.87	3.51
1464	1967	3.066760	GCACGAAATTAATCTCCCCCTTG	59.933	47.826	0.00	0.00	0.00	3.61
1500	2003	3.151022	GCCTGGGAGAGGTCGAGG	61.151	72.222	0.00	0.00	44.97	4.63
1627	2130	1.455849	CTGCAAAGGACCTGACCCA	59.544	57.895	0.00	0.00	0.00	4.51
1723	2226	1.808411	TCCTTGTCATCCAGTTTCGC	58.192	50.000	0.00	0.00	0.00	4.70
1766	2269	4.851252	AGAGGGGGCCATGAGGGG	62.851	72.222	4.39	0.00	37.04	4.79
1824	2327	0.179137	CGGCGCAGACTGTGATCTTA	60.179	55.000	20.12	0.00	0.00	2.10
1827	2330	3.558411	GCGGCGCAGACTGTGATC	61.558	66.667	29.21	9.54	0.00	2.92
1893	2396	1.019278	CCACCATCGGGAACTCAACG	61.019	60.000	0.00	0.00	38.05	4.10
2050	2553	2.100989	GAGGTCCTCTGTTCCGTATGT	58.899	52.381	12.02	0.00	0.00	2.29
2057	2560	2.894126	TCTTGTGAGAGGTCCTCTGTTC	59.106	50.000	26.69	12.55	41.35	3.18
2288	3778	0.036306	GCGGAGGGAGGAACTGAAAA	59.964	55.000	0.00	0.00	41.55	2.29
2292	3782	1.219393	GAAGCGGAGGGAGGAACTG	59.781	63.158	0.00	0.00	41.55	3.16
2307	3797	9.717942	CTAAATCAGGGAGAACTAATATGGAAG	57.282	37.037	0.00	0.00	0.00	3.46
2322	3812	8.849543	AGTATAAGGTTGTACTAAATCAGGGA	57.150	34.615	0.00	0.00	34.01	4.20
2406	3896	8.801715	AAATAATAAATAAAGCATGTCGCCTG	57.198	30.769	0.00	0.00	44.04	4.85
2408	3898	9.893305	ACTAAATAATAAATAAAGCATGTCGCC	57.107	29.630	0.00	0.00	44.04	5.54
2472	4396	5.424757	AGCAAGTTGTGTAGTGTAAAGTGA	58.575	37.500	4.48	0.00	0.00	3.41
2487	4411	1.270625	TGGTCGGGACTAAGCAAGTTG	60.271	52.381	0.00	0.00	39.07	3.16
2535	4459	1.822506	GGGAGAAAAAGAAGGGTCGG	58.177	55.000	0.00	0.00	0.00	4.79
2554	4486	2.480419	GGGTTCGCTGGATATCATTTCG	59.520	50.000	4.83	2.66	0.00	3.46
2619	4551	0.572590	CGTGATTCGCGCTAGGAAAG	59.427	55.000	5.56	0.00	0.00	2.62
2631	4563	2.690778	AAGCCTTGCGCCGTGATTC	61.691	57.895	4.18	0.00	38.78	2.52
2787	4726	2.423577	GAAGTGGCAAAGTGTATCGGT	58.576	47.619	0.00	0.00	0.00	4.69
3154	5104	7.254863	GCCATCCTTTAACAATAAAATGCCATG	60.255	37.037	0.00	0.00	30.87	3.66
3155	5105	6.767423	GCCATCCTTTAACAATAAAATGCCAT	59.233	34.615	0.00	0.00	30.87	4.40
3170	5120	9.742144	TGTTAGTAATAAAACTGCCATCCTTTA	57.258	29.630	0.00	0.00	0.00	1.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.