Multiple sequence alignment - TraesCS3D01G416000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G416000 chr3D 100.000 4368 0 0 1 4368 527481460 527485827 0.000000e+00 8067.0
1 TraesCS3D01G416000 chr3D 87.957 1860 161 30 1820 3651 527506846 527508670 0.000000e+00 2135.0
2 TraesCS3D01G416000 chr3D 78.450 2116 322 82 1387 3446 512979370 512981407 0.000000e+00 1258.0
3 TraesCS3D01G416000 chr3D 94.127 664 37 1 3705 4368 597457936 597458597 0.000000e+00 1009.0
4 TraesCS3D01G416000 chr3D 88.452 788 80 5 1040 1819 527505959 527506743 0.000000e+00 941.0
5 TraesCS3D01G416000 chr3D 82.456 285 20 6 821 1075 527505671 527505955 5.690000e-54 222.0
6 TraesCS3D01G416000 chr3D 88.136 59 6 1 383 441 297594060 297594003 7.840000e-08 69.4
7 TraesCS3D01G416000 chr3B 91.685 3211 158 36 575 3704 697568561 697565379 0.000000e+00 4349.0
8 TraesCS3D01G416000 chr3B 78.065 1664 239 75 1870 3502 675579950 675581518 0.000000e+00 935.0
9 TraesCS3D01G416000 chr2D 93.684 665 42 0 3704 4368 317597937 317597273 0.000000e+00 996.0
10 TraesCS3D01G416000 chr2D 93.645 598 38 0 3704 4301 650044636 650044039 0.000000e+00 894.0
11 TraesCS3D01G416000 chr7B 92.140 598 39 4 3705 4301 577807657 577807067 0.000000e+00 837.0
12 TraesCS3D01G416000 chr7B 93.089 492 32 2 3705 4196 698942502 698942991 0.000000e+00 719.0
13 TraesCS3D01G416000 chr7B 92.480 492 35 2 3705 4196 693406685 693407174 0.000000e+00 702.0
14 TraesCS3D01G416000 chr2B 93.220 531 28 4 3776 4301 574039517 574038990 0.000000e+00 774.0
15 TraesCS3D01G416000 chr2B 89.399 566 48 6 3705 4258 691530498 691529933 0.000000e+00 702.0
16 TraesCS3D01G416000 chr5A 94.988 419 21 0 3950 4368 109937703 109938121 0.000000e+00 658.0
17 TraesCS3D01G416000 chr7A 93.048 374 25 1 3705 4077 95251708 95251335 2.970000e-151 545.0
18 TraesCS3D01G416000 chr3A 80.777 489 74 16 2641 3124 648550610 648551083 8.930000e-97 364.0
19 TraesCS3D01G416000 chr3A 80.000 115 17 5 3130 3243 648552505 648552614 3.620000e-11 80.5
20 TraesCS3D01G416000 chr3A 94.737 38 2 0 2145 2182 680090612 680090575 4.720000e-05 60.2
21 TraesCS3D01G416000 chr4D 95.833 72 2 1 4297 4368 67290357 67290427 9.930000e-22 115.0
22 TraesCS3D01G416000 chr6B 82.443 131 13 8 164 284 717955157 717955027 5.970000e-19 106.0
23 TraesCS3D01G416000 chr5D 88.060 67 7 1 383 449 515818725 515818660 1.300000e-10 78.7
24 TraesCS3D01G416000 chr5D 75.263 190 23 7 385 557 256412740 256412558 7.840000e-08 69.4
25 TraesCS3D01G416000 chr5D 91.304 46 3 1 382 427 124569129 124569085 1.310000e-05 62.1
26 TraesCS3D01G416000 chr1D 89.062 64 6 1 383 446 393035285 393035223 1.300000e-10 78.7
27 TraesCS3D01G416000 chr1D 84.337 83 7 3 384 461 289517494 289517413 4.680000e-10 76.8
28 TraesCS3D01G416000 chr1D 85.135 74 4 3 374 446 55887269 55887202 7.840000e-08 69.4
29 TraesCS3D01G416000 chr4A 74.359 195 36 11 373 557 26637486 26637676 2.180000e-08 71.3
30 TraesCS3D01G416000 chr1B 85.246 61 9 0 383 443 317318283 317318343 3.650000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G416000 chr3D 527481460 527485827 4367 False 8067.000000 8067 100.000000 1 4368 1 chr3D.!!$F2 4367
1 TraesCS3D01G416000 chr3D 512979370 512981407 2037 False 1258.000000 1258 78.450000 1387 3446 1 chr3D.!!$F1 2059
2 TraesCS3D01G416000 chr3D 527505671 527508670 2999 False 1099.333333 2135 86.288333 821 3651 3 chr3D.!!$F4 2830
3 TraesCS3D01G416000 chr3D 597457936 597458597 661 False 1009.000000 1009 94.127000 3705 4368 1 chr3D.!!$F3 663
4 TraesCS3D01G416000 chr3B 697565379 697568561 3182 True 4349.000000 4349 91.685000 575 3704 1 chr3B.!!$R1 3129
5 TraesCS3D01G416000 chr3B 675579950 675581518 1568 False 935.000000 935 78.065000 1870 3502 1 chr3B.!!$F1 1632
6 TraesCS3D01G416000 chr2D 317597273 317597937 664 True 996.000000 996 93.684000 3704 4368 1 chr2D.!!$R1 664
7 TraesCS3D01G416000 chr2D 650044039 650044636 597 True 894.000000 894 93.645000 3704 4301 1 chr2D.!!$R2 597
8 TraesCS3D01G416000 chr7B 577807067 577807657 590 True 837.000000 837 92.140000 3705 4301 1 chr7B.!!$R1 596
9 TraesCS3D01G416000 chr2B 574038990 574039517 527 True 774.000000 774 93.220000 3776 4301 1 chr2B.!!$R1 525
10 TraesCS3D01G416000 chr2B 691529933 691530498 565 True 702.000000 702 89.399000 3705 4258 1 chr2B.!!$R2 553
11 TraesCS3D01G416000 chr3A 648550610 648552614 2004 False 222.250000 364 80.388500 2641 3243 2 chr3A.!!$F1 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 163 0.033781 TTGCATCAACAAGGCAAGGC 59.966 50.0 0.00 0.0 42.12 4.35 F
344 345 0.110823 CGAAAGCCTCGTCGGTTTTG 60.111 55.0 11.52 7.3 44.97 2.44 F
429 430 0.328926 AAATAGACCCGGCCCGAAAA 59.671 50.0 3.71 0.0 0.00 2.29 F
568 569 0.396811 GGCGGGCTATATCACTTGGT 59.603 55.0 0.00 0.0 0.00 3.67 F
652 653 0.689412 GACAGAGAAGGGGAGGAGGG 60.689 65.0 0.00 0.0 0.00 4.30 F
779 788 0.827368 GGGCGAGAGGAGTGATTCTT 59.173 55.0 0.00 0.0 0.00 2.52 F
2333 2552 1.061799 GATTGCGCTGCAGTTTCGTG 61.062 55.0 16.64 0.0 40.61 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1056 1095 1.068741 ACCGTCTTCTCTGGTGTCAAC 59.931 52.381 0.00 0.00 33.91 3.18 R
1571 1673 2.087501 TGACGCGCTGAAGGAAAATA 57.912 45.000 5.73 0.00 0.00 1.40 R
1944 2160 3.205338 GGCTGCACAAAAAGGAAATGTT 58.795 40.909 0.50 0.00 0.00 2.71 R
2409 2628 3.806949 ACCACCACCACATATTTCAGT 57.193 42.857 0.00 0.00 0.00 3.41 R
2639 2859 6.839124 ATGTCAAGGCAAGTGAATATCAAA 57.161 33.333 0.00 0.00 0.00 2.69 R
2804 3024 7.868922 TGATGAAGCCAAATGAACATTATATGC 59.131 33.333 0.37 2.52 0.00 3.14 R
3540 5219 0.246635 ACCGGAGACCAATCGTTCTG 59.753 55.000 9.46 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.911661 GCTCTTGAGCAATTGTCTTGT 57.088 42.857 16.71 0.00 34.41 3.16
21 22 4.234530 GCTCTTGAGCAATTGTCTTGTT 57.765 40.909 16.71 0.00 34.41 2.83
22 23 3.979495 GCTCTTGAGCAATTGTCTTGTTG 59.021 43.478 16.71 0.00 34.41 3.33
23 24 4.498682 GCTCTTGAGCAATTGTCTTGTTGT 60.499 41.667 16.71 0.00 34.41 3.32
24 25 4.923893 TCTTGAGCAATTGTCTTGTTGTG 58.076 39.130 7.40 0.00 0.00 3.33
25 26 4.639755 TCTTGAGCAATTGTCTTGTTGTGA 59.360 37.500 7.40 0.00 0.00 3.58
26 27 4.291540 TGAGCAATTGTCTTGTTGTGAC 57.708 40.909 7.40 0.00 35.21 3.67
27 28 3.242706 TGAGCAATTGTCTTGTTGTGACG 60.243 43.478 7.40 0.00 37.26 4.35
28 29 2.682856 AGCAATTGTCTTGTTGTGACGT 59.317 40.909 7.40 0.00 37.26 4.34
29 30 3.035942 GCAATTGTCTTGTTGTGACGTC 58.964 45.455 9.11 9.11 37.26 4.34
30 31 3.617669 CAATTGTCTTGTTGTGACGTCC 58.382 45.455 14.12 5.06 37.26 4.79
31 32 2.684001 TTGTCTTGTTGTGACGTCCT 57.316 45.000 14.12 0.00 37.26 3.85
32 33 2.684001 TGTCTTGTTGTGACGTCCTT 57.316 45.000 14.12 0.00 37.26 3.36
33 34 2.546778 TGTCTTGTTGTGACGTCCTTC 58.453 47.619 14.12 4.36 37.26 3.46
34 35 1.521423 GTCTTGTTGTGACGTCCTTCG 59.479 52.381 14.12 0.00 46.00 3.79
35 36 1.406180 TCTTGTTGTGACGTCCTTCGA 59.594 47.619 14.12 0.74 42.86 3.71
36 37 1.787155 CTTGTTGTGACGTCCTTCGAG 59.213 52.381 14.12 6.55 42.86 4.04
37 38 0.742505 TGTTGTGACGTCCTTCGAGT 59.257 50.000 14.12 0.00 42.86 4.18
38 39 1.948834 TGTTGTGACGTCCTTCGAGTA 59.051 47.619 14.12 0.00 42.86 2.59
39 40 2.031420 TGTTGTGACGTCCTTCGAGTAG 60.031 50.000 14.12 0.00 42.86 2.57
40 41 1.162698 TGTGACGTCCTTCGAGTAGG 58.837 55.000 14.12 0.00 42.86 3.18
41 42 1.163554 GTGACGTCCTTCGAGTAGGT 58.836 55.000 14.12 0.00 42.86 3.08
42 43 1.538950 GTGACGTCCTTCGAGTAGGTT 59.461 52.381 14.12 0.00 42.86 3.50
43 44 2.030451 GTGACGTCCTTCGAGTAGGTTT 60.030 50.000 14.12 0.00 42.86 3.27
44 45 3.189287 GTGACGTCCTTCGAGTAGGTTTA 59.811 47.826 14.12 0.00 42.86 2.01
45 46 3.820467 TGACGTCCTTCGAGTAGGTTTAA 59.180 43.478 14.12 0.00 42.86 1.52
46 47 4.278170 TGACGTCCTTCGAGTAGGTTTAAA 59.722 41.667 14.12 0.00 42.86 1.52
47 48 5.200368 ACGTCCTTCGAGTAGGTTTAAAA 57.800 39.130 3.11 0.00 42.86 1.52
48 49 5.600696 ACGTCCTTCGAGTAGGTTTAAAAA 58.399 37.500 3.11 0.00 42.86 1.94
49 50 5.463392 ACGTCCTTCGAGTAGGTTTAAAAAC 59.537 40.000 3.11 0.00 42.86 2.43
61 62 3.035251 GTTTAAAAACCGAACCGAACCG 58.965 45.455 0.00 0.00 32.82 4.44
62 63 2.231215 TAAAAACCGAACCGAACCGA 57.769 45.000 0.00 0.00 0.00 4.69
63 64 1.377536 AAAAACCGAACCGAACCGAA 58.622 45.000 0.00 0.00 0.00 4.30
64 65 0.939419 AAAACCGAACCGAACCGAAG 59.061 50.000 0.00 0.00 0.00 3.79
93 94 2.700722 AAAAATTGTTGCCCGGTGTT 57.299 40.000 0.00 0.00 0.00 3.32
94 95 2.700722 AAAATTGTTGCCCGGTGTTT 57.299 40.000 0.00 0.00 0.00 2.83
95 96 3.821421 AAAATTGTTGCCCGGTGTTTA 57.179 38.095 0.00 0.00 0.00 2.01
96 97 3.821421 AAATTGTTGCCCGGTGTTTAA 57.179 38.095 0.00 0.00 0.00 1.52
97 98 3.378911 AATTGTTGCCCGGTGTTTAAG 57.621 42.857 0.00 0.00 0.00 1.85
98 99 1.033574 TTGTTGCCCGGTGTTTAAGG 58.966 50.000 0.00 0.00 0.00 2.69
99 100 0.106619 TGTTGCCCGGTGTTTAAGGT 60.107 50.000 0.00 0.00 0.00 3.50
100 101 0.312729 GTTGCCCGGTGTTTAAGGTG 59.687 55.000 0.00 0.00 0.00 4.00
101 102 0.106619 TTGCCCGGTGTTTAAGGTGT 60.107 50.000 0.00 0.00 0.00 4.16
102 103 0.763652 TGCCCGGTGTTTAAGGTGTA 59.236 50.000 0.00 0.00 0.00 2.90
103 104 1.159285 GCCCGGTGTTTAAGGTGTAC 58.841 55.000 0.00 0.00 0.00 2.90
104 105 1.812235 CCCGGTGTTTAAGGTGTACC 58.188 55.000 0.00 0.00 0.00 3.34
109 110 4.198028 GGTGTTTAAGGTGTACCGATCT 57.802 45.455 0.00 0.00 42.08 2.75
110 111 4.572909 GGTGTTTAAGGTGTACCGATCTT 58.427 43.478 0.00 0.00 42.08 2.40
111 112 4.999311 GGTGTTTAAGGTGTACCGATCTTT 59.001 41.667 0.00 0.00 42.08 2.52
112 113 5.471116 GGTGTTTAAGGTGTACCGATCTTTT 59.529 40.000 0.00 0.00 42.08 2.27
113 114 6.650390 GGTGTTTAAGGTGTACCGATCTTTTA 59.350 38.462 0.00 0.00 42.08 1.52
114 115 7.148523 GGTGTTTAAGGTGTACCGATCTTTTAG 60.149 40.741 0.00 0.00 42.08 1.85
115 116 7.386025 GTGTTTAAGGTGTACCGATCTTTTAGT 59.614 37.037 0.00 0.00 42.08 2.24
116 117 7.933033 TGTTTAAGGTGTACCGATCTTTTAGTT 59.067 33.333 0.00 0.00 42.08 2.24
117 118 9.423061 GTTTAAGGTGTACCGATCTTTTAGTTA 57.577 33.333 0.00 0.00 42.08 2.24
118 119 9.995003 TTTAAGGTGTACCGATCTTTTAGTTAA 57.005 29.630 0.00 0.00 42.08 2.01
119 120 9.995003 TTAAGGTGTACCGATCTTTTAGTTAAA 57.005 29.630 0.00 0.00 42.08 1.52
120 121 8.907222 AAGGTGTACCGATCTTTTAGTTAAAA 57.093 30.769 0.00 0.00 42.08 1.52
121 122 8.907222 AGGTGTACCGATCTTTTAGTTAAAAA 57.093 30.769 0.00 0.00 42.08 1.94
162 163 0.033781 TTGCATCAACAAGGCAAGGC 59.966 50.000 0.00 0.00 42.12 4.35
163 164 1.114119 TGCATCAACAAGGCAAGGCA 61.114 50.000 0.00 0.00 34.05 4.75
164 165 0.248289 GCATCAACAAGGCAAGGCAT 59.752 50.000 0.00 0.00 0.00 4.40
165 166 2.004583 CATCAACAAGGCAAGGCATG 57.995 50.000 0.00 0.00 0.00 4.06
166 167 1.274167 CATCAACAAGGCAAGGCATGT 59.726 47.619 0.00 0.00 32.95 3.21
167 168 1.412079 TCAACAAGGCAAGGCATGTT 58.588 45.000 10.79 10.79 39.45 2.71
168 169 2.591923 TCAACAAGGCAAGGCATGTTA 58.408 42.857 15.21 4.15 37.78 2.41
169 170 2.961741 TCAACAAGGCAAGGCATGTTAA 59.038 40.909 15.21 0.54 37.78 2.01
170 171 3.386078 TCAACAAGGCAAGGCATGTTAAA 59.614 39.130 15.21 6.06 37.78 1.52
171 172 3.665745 ACAAGGCAAGGCATGTTAAAG 57.334 42.857 0.00 0.00 28.47 1.85
172 173 2.299867 ACAAGGCAAGGCATGTTAAAGG 59.700 45.455 0.00 0.00 28.47 3.11
173 174 0.897621 AGGCAAGGCATGTTAAAGGC 59.102 50.000 0.00 0.00 0.00 4.35
181 182 3.792401 GGCATGTTAAAGGCCAATAACC 58.208 45.455 21.29 10.64 46.92 2.85
182 183 3.196685 GGCATGTTAAAGGCCAATAACCA 59.803 43.478 21.29 13.20 46.92 3.67
183 184 4.323104 GGCATGTTAAAGGCCAATAACCAA 60.323 41.667 21.29 9.54 46.92 3.67
184 185 4.629634 GCATGTTAAAGGCCAATAACCAAC 59.370 41.667 21.29 10.98 32.31 3.77
185 186 5.568624 GCATGTTAAAGGCCAATAACCAACT 60.569 40.000 21.29 7.07 32.31 3.16
186 187 6.350612 GCATGTTAAAGGCCAATAACCAACTA 60.351 38.462 21.29 8.44 32.31 2.24
187 188 6.827586 TGTTAAAGGCCAATAACCAACTAG 57.172 37.500 21.29 0.00 32.31 2.57
188 189 5.712917 TGTTAAAGGCCAATAACCAACTAGG 59.287 40.000 21.29 0.00 45.67 3.02
189 190 2.437085 AGGCCAATAACCAACTAGGC 57.563 50.000 5.01 0.00 43.14 3.93
190 191 1.923148 AGGCCAATAACCAACTAGGCT 59.077 47.619 5.01 0.00 43.14 4.58
191 192 3.120108 AGGCCAATAACCAACTAGGCTA 58.880 45.455 5.01 0.00 43.14 3.93
192 193 3.526019 AGGCCAATAACCAACTAGGCTAA 59.474 43.478 5.01 0.00 43.14 3.09
193 194 4.168088 AGGCCAATAACCAACTAGGCTAAT 59.832 41.667 5.01 0.00 43.14 1.73
194 195 5.371472 AGGCCAATAACCAACTAGGCTAATA 59.629 40.000 5.01 0.00 43.14 0.98
195 196 6.066032 GGCCAATAACCAACTAGGCTAATAA 58.934 40.000 0.00 0.00 43.14 1.40
196 197 6.016527 GGCCAATAACCAACTAGGCTAATAAC 60.017 42.308 0.00 0.00 43.14 1.89
197 198 6.544564 GCCAATAACCAACTAGGCTAATAACA 59.455 38.462 0.00 0.00 43.14 2.41
198 199 7.067737 GCCAATAACCAACTAGGCTAATAACAA 59.932 37.037 0.00 0.00 43.14 2.83
199 200 9.131791 CCAATAACCAACTAGGCTAATAACAAT 57.868 33.333 0.00 0.00 43.14 2.71
203 204 8.417273 AACCAACTAGGCTAATAACAATTTGT 57.583 30.769 0.00 0.00 43.14 2.83
204 205 7.826690 ACCAACTAGGCTAATAACAATTTGTG 58.173 34.615 2.13 0.00 43.14 3.33
205 206 7.668052 ACCAACTAGGCTAATAACAATTTGTGA 59.332 33.333 2.13 0.00 43.14 3.58
206 207 8.686334 CCAACTAGGCTAATAACAATTTGTGAT 58.314 33.333 2.13 0.00 0.00 3.06
248 249 9.897744 ATATTACGTGCATTCATTTGATTAAGG 57.102 29.630 0.00 0.00 0.00 2.69
249 250 4.423732 ACGTGCATTCATTTGATTAAGGC 58.576 39.130 0.00 0.00 0.00 4.35
250 251 3.798337 CGTGCATTCATTTGATTAAGGCC 59.202 43.478 0.00 0.00 0.00 5.19
251 252 4.677514 CGTGCATTCATTTGATTAAGGCCA 60.678 41.667 5.01 0.00 0.00 5.36
252 253 5.177326 GTGCATTCATTTGATTAAGGCCAA 58.823 37.500 5.01 0.00 0.00 4.52
253 254 5.063817 GTGCATTCATTTGATTAAGGCCAAC 59.936 40.000 5.01 0.00 0.00 3.77
254 255 5.046448 TGCATTCATTTGATTAAGGCCAACT 60.046 36.000 5.01 0.00 0.00 3.16
255 256 5.876460 GCATTCATTTGATTAAGGCCAACTT 59.124 36.000 5.01 0.00 43.28 2.66
256 257 6.372381 GCATTCATTTGATTAAGGCCAACTTT 59.628 34.615 5.01 0.00 40.64 2.66
257 258 7.094677 GCATTCATTTGATTAAGGCCAACTTTT 60.095 33.333 5.01 0.00 40.64 2.27
258 259 8.785946 CATTCATTTGATTAAGGCCAACTTTTT 58.214 29.630 5.01 0.00 40.64 1.94
260 261 9.838339 TTCATTTGATTAAGGCCAACTTTTTAA 57.162 25.926 5.01 0.00 40.64 1.52
261 262 9.838339 TCATTTGATTAAGGCCAACTTTTTAAA 57.162 25.926 5.01 0.00 40.64 1.52
272 273 9.772973 AGGCCAACTTTTTAAAAATACCTTAAG 57.227 29.630 13.55 2.58 0.00 1.85
273 274 9.550406 GGCCAACTTTTTAAAAATACCTTAAGT 57.450 29.630 13.55 3.18 0.00 2.24
299 300 2.627863 TTTCATCGCAAATGAACCGG 57.372 45.000 0.00 0.00 37.71 5.28
300 301 0.170116 TTCATCGCAAATGAACCGGC 59.830 50.000 0.00 0.00 33.55 6.13
301 302 0.957888 TCATCGCAAATGAACCGGCA 60.958 50.000 0.00 0.00 0.00 5.69
302 303 0.523968 CATCGCAAATGAACCGGCAG 60.524 55.000 0.00 0.00 0.00 4.85
303 304 0.960364 ATCGCAAATGAACCGGCAGT 60.960 50.000 0.00 0.00 0.00 4.40
304 305 1.154225 CGCAAATGAACCGGCAGTC 60.154 57.895 0.00 0.00 0.00 3.51
305 306 1.212751 GCAAATGAACCGGCAGTCC 59.787 57.895 0.00 0.00 0.00 3.85
306 307 1.523154 GCAAATGAACCGGCAGTCCA 61.523 55.000 0.00 0.00 0.00 4.02
307 308 0.958091 CAAATGAACCGGCAGTCCAA 59.042 50.000 0.00 0.00 0.00 3.53
308 309 1.545582 CAAATGAACCGGCAGTCCAAT 59.454 47.619 0.00 0.00 0.00 3.16
309 310 1.463674 AATGAACCGGCAGTCCAATC 58.536 50.000 0.00 0.00 0.00 2.67
310 311 0.327924 ATGAACCGGCAGTCCAATCA 59.672 50.000 0.00 0.00 0.00 2.57
311 312 0.321564 TGAACCGGCAGTCCAATCAG 60.322 55.000 0.00 0.00 0.00 2.90
312 313 0.321653 GAACCGGCAGTCCAATCAGT 60.322 55.000 0.00 0.00 0.00 3.41
313 314 0.981183 AACCGGCAGTCCAATCAGTA 59.019 50.000 0.00 0.00 0.00 2.74
314 315 0.981183 ACCGGCAGTCCAATCAGTAA 59.019 50.000 0.00 0.00 0.00 2.24
315 316 1.349688 ACCGGCAGTCCAATCAGTAAA 59.650 47.619 0.00 0.00 0.00 2.01
316 317 2.224670 ACCGGCAGTCCAATCAGTAAAA 60.225 45.455 0.00 0.00 0.00 1.52
317 318 2.420022 CCGGCAGTCCAATCAGTAAAAG 59.580 50.000 0.00 0.00 0.00 2.27
318 319 2.159517 CGGCAGTCCAATCAGTAAAAGC 60.160 50.000 0.00 0.00 0.00 3.51
319 320 2.164422 GGCAGTCCAATCAGTAAAAGCC 59.836 50.000 0.00 0.00 0.00 4.35
320 321 3.084786 GCAGTCCAATCAGTAAAAGCCT 58.915 45.455 0.00 0.00 0.00 4.58
321 322 3.119708 GCAGTCCAATCAGTAAAAGCCTG 60.120 47.826 0.00 0.00 0.00 4.85
322 323 4.326826 CAGTCCAATCAGTAAAAGCCTGA 58.673 43.478 0.00 0.00 42.74 3.86
323 324 4.761739 CAGTCCAATCAGTAAAAGCCTGAA 59.238 41.667 0.00 0.00 41.93 3.02
324 325 4.762251 AGTCCAATCAGTAAAAGCCTGAAC 59.238 41.667 0.00 0.00 41.93 3.18
325 326 4.079253 TCCAATCAGTAAAAGCCTGAACC 58.921 43.478 0.00 0.00 41.93 3.62
326 327 3.119849 CCAATCAGTAAAAGCCTGAACCG 60.120 47.826 0.00 0.00 41.93 4.44
327 328 3.695830 ATCAGTAAAAGCCTGAACCGA 57.304 42.857 0.00 0.00 41.93 4.69
328 329 3.478857 TCAGTAAAAGCCTGAACCGAA 57.521 42.857 0.00 0.00 36.07 4.30
329 330 3.811083 TCAGTAAAAGCCTGAACCGAAA 58.189 40.909 0.00 0.00 36.07 3.46
330 331 3.813166 TCAGTAAAAGCCTGAACCGAAAG 59.187 43.478 0.00 0.00 36.07 2.62
331 332 2.552743 AGTAAAAGCCTGAACCGAAAGC 59.447 45.455 0.00 0.00 0.00 3.51
332 333 0.673985 AAAAGCCTGAACCGAAAGCC 59.326 50.000 0.00 0.00 0.00 4.35
333 334 0.178990 AAAGCCTGAACCGAAAGCCT 60.179 50.000 0.00 0.00 0.00 4.58
334 335 0.606673 AAGCCTGAACCGAAAGCCTC 60.607 55.000 0.00 0.00 0.00 4.70
336 337 1.004918 CCTGAACCGAAAGCCTCGT 60.005 57.895 5.22 0.00 46.65 4.18
337 338 1.014564 CCTGAACCGAAAGCCTCGTC 61.015 60.000 5.22 0.00 46.65 4.20
338 339 1.344942 CTGAACCGAAAGCCTCGTCG 61.345 60.000 5.22 0.00 46.65 5.12
342 343 3.946907 CGAAAGCCTCGTCGGTTT 58.053 55.556 0.00 2.19 42.89 3.27
344 345 0.110823 CGAAAGCCTCGTCGGTTTTG 60.111 55.000 11.52 7.30 44.97 2.44
345 346 0.942252 GAAAGCCTCGTCGGTTTTGT 59.058 50.000 11.52 0.00 44.97 2.83
346 347 1.332686 GAAAGCCTCGTCGGTTTTGTT 59.667 47.619 11.52 0.00 44.97 2.83
347 348 0.942252 AAGCCTCGTCGGTTTTGTTC 59.058 50.000 0.00 0.00 31.37 3.18
348 349 0.883370 AGCCTCGTCGGTTTTGTTCC 60.883 55.000 0.00 0.00 34.25 3.62
349 350 0.883370 GCCTCGTCGGTTTTGTTCCT 60.883 55.000 0.00 0.00 34.25 3.36
350 351 1.589803 CCTCGTCGGTTTTGTTCCTT 58.410 50.000 0.00 0.00 0.00 3.36
351 352 1.944709 CCTCGTCGGTTTTGTTCCTTT 59.055 47.619 0.00 0.00 0.00 3.11
352 353 2.356695 CCTCGTCGGTTTTGTTCCTTTT 59.643 45.455 0.00 0.00 0.00 2.27
353 354 3.181494 CCTCGTCGGTTTTGTTCCTTTTT 60.181 43.478 0.00 0.00 0.00 1.94
354 355 4.035441 CCTCGTCGGTTTTGTTCCTTTTTA 59.965 41.667 0.00 0.00 0.00 1.52
355 356 5.448904 CCTCGTCGGTTTTGTTCCTTTTTAA 60.449 40.000 0.00 0.00 0.00 1.52
356 357 5.947443 TCGTCGGTTTTGTTCCTTTTTAAA 58.053 33.333 0.00 0.00 0.00 1.52
357 358 5.799435 TCGTCGGTTTTGTTCCTTTTTAAAC 59.201 36.000 0.00 0.00 0.00 2.01
358 359 5.801444 CGTCGGTTTTGTTCCTTTTTAAACT 59.199 36.000 0.00 0.00 0.00 2.66
359 360 6.966066 CGTCGGTTTTGTTCCTTTTTAAACTA 59.034 34.615 0.00 0.00 0.00 2.24
360 361 7.644945 CGTCGGTTTTGTTCCTTTTTAAACTAT 59.355 33.333 0.00 0.00 0.00 2.12
361 362 8.748582 GTCGGTTTTGTTCCTTTTTAAACTATG 58.251 33.333 0.00 0.00 0.00 2.23
362 363 7.435784 TCGGTTTTGTTCCTTTTTAAACTATGC 59.564 33.333 0.00 0.00 0.00 3.14
363 364 7.306925 CGGTTTTGTTCCTTTTTAAACTATGCC 60.307 37.037 0.00 0.00 0.00 4.40
364 365 7.496263 GGTTTTGTTCCTTTTTAAACTATGCCA 59.504 33.333 0.00 0.00 0.00 4.92
365 366 9.051679 GTTTTGTTCCTTTTTAAACTATGCCAT 57.948 29.630 0.00 0.00 0.00 4.40
366 367 8.825667 TTTGTTCCTTTTTAAACTATGCCATC 57.174 30.769 0.00 0.00 0.00 3.51
367 368 6.930731 TGTTCCTTTTTAAACTATGCCATCC 58.069 36.000 0.00 0.00 0.00 3.51
368 369 6.723977 TGTTCCTTTTTAAACTATGCCATCCT 59.276 34.615 0.00 0.00 0.00 3.24
369 370 7.234577 TGTTCCTTTTTAAACTATGCCATCCTT 59.765 33.333 0.00 0.00 0.00 3.36
370 371 7.404671 TCCTTTTTAAACTATGCCATCCTTC 57.595 36.000 0.00 0.00 0.00 3.46
371 372 6.951198 TCCTTTTTAAACTATGCCATCCTTCA 59.049 34.615 0.00 0.00 0.00 3.02
372 373 7.453126 TCCTTTTTAAACTATGCCATCCTTCAA 59.547 33.333 0.00 0.00 0.00 2.69
373 374 8.260114 CCTTTTTAAACTATGCCATCCTTCAAT 58.740 33.333 0.00 0.00 0.00 2.57
374 375 9.090692 CTTTTTAAACTATGCCATCCTTCAATG 57.909 33.333 0.00 0.00 0.00 2.82
375 376 4.660789 AAACTATGCCATCCTTCAATGC 57.339 40.909 0.00 0.00 0.00 3.56
376 377 2.590821 ACTATGCCATCCTTCAATGCC 58.409 47.619 0.00 0.00 0.00 4.40
377 378 1.891150 CTATGCCATCCTTCAATGCCC 59.109 52.381 0.00 0.00 0.00 5.36
378 379 1.111116 ATGCCATCCTTCAATGCCCG 61.111 55.000 0.00 0.00 0.00 6.13
379 380 1.453745 GCCATCCTTCAATGCCCGA 60.454 57.895 0.00 0.00 0.00 5.14
380 381 1.728490 GCCATCCTTCAATGCCCGAC 61.728 60.000 0.00 0.00 0.00 4.79
381 382 0.394216 CCATCCTTCAATGCCCGACA 60.394 55.000 0.00 0.00 0.00 4.35
382 383 1.683943 CATCCTTCAATGCCCGACAT 58.316 50.000 0.00 0.00 42.30 3.06
391 392 0.469917 ATGCCCGACATTAGTCCTGG 59.530 55.000 0.00 0.00 41.87 4.45
392 393 1.523938 GCCCGACATTAGTCCTGGC 60.524 63.158 7.71 7.71 45.88 4.85
393 394 1.146263 CCCGACATTAGTCCTGGCC 59.854 63.158 0.00 0.00 41.87 5.36
394 395 1.622607 CCCGACATTAGTCCTGGCCA 61.623 60.000 4.71 4.71 41.87 5.36
395 396 0.469917 CCGACATTAGTCCTGGCCAT 59.530 55.000 5.51 0.00 41.87 4.40
396 397 1.586422 CGACATTAGTCCTGGCCATG 58.414 55.000 5.51 2.84 41.87 3.66
397 398 1.811558 CGACATTAGTCCTGGCCATGG 60.812 57.143 5.51 7.63 41.87 3.66
398 399 0.552848 ACATTAGTCCTGGCCATGGG 59.447 55.000 15.13 4.96 0.00 4.00
415 416 3.219198 GCAGCCCGGCCCAAATAG 61.219 66.667 5.55 0.00 0.00 1.73
416 417 2.595095 CAGCCCGGCCCAAATAGA 59.405 61.111 5.55 0.00 0.00 1.98
417 418 1.823899 CAGCCCGGCCCAAATAGAC 60.824 63.158 5.55 0.00 0.00 2.59
418 419 2.518587 GCCCGGCCCAAATAGACC 60.519 66.667 0.00 0.00 0.00 3.85
419 420 2.194868 CCCGGCCCAAATAGACCC 59.805 66.667 0.00 0.00 0.00 4.46
420 421 2.203153 CCGGCCCAAATAGACCCG 60.203 66.667 0.00 0.00 38.71 5.28
421 422 2.203153 CGGCCCAAATAGACCCGG 60.203 66.667 0.00 0.00 35.54 5.73
422 423 2.518587 GGCCCAAATAGACCCGGC 60.519 66.667 0.00 0.00 38.96 6.13
423 424 2.518587 GCCCAAATAGACCCGGCC 60.519 66.667 0.00 0.00 33.30 6.13
424 425 2.194868 CCCAAATAGACCCGGCCC 59.805 66.667 0.00 0.00 0.00 5.80
425 426 2.203153 CCAAATAGACCCGGCCCG 60.203 66.667 0.00 0.00 0.00 6.13
426 427 2.737881 CCAAATAGACCCGGCCCGA 61.738 63.158 3.71 0.00 0.00 5.14
427 428 1.222387 CAAATAGACCCGGCCCGAA 59.778 57.895 3.71 0.00 0.00 4.30
428 429 0.393267 CAAATAGACCCGGCCCGAAA 60.393 55.000 3.71 0.00 0.00 3.46
429 430 0.328926 AAATAGACCCGGCCCGAAAA 59.671 50.000 3.71 0.00 0.00 2.29
430 431 0.549469 AATAGACCCGGCCCGAAAAT 59.451 50.000 3.71 0.00 0.00 1.82
431 432 1.426751 ATAGACCCGGCCCGAAAATA 58.573 50.000 3.71 0.00 0.00 1.40
432 433 0.465287 TAGACCCGGCCCGAAAATAC 59.535 55.000 3.71 0.00 0.00 1.89
433 434 1.820906 GACCCGGCCCGAAAATACC 60.821 63.158 3.71 0.00 0.00 2.73
434 435 2.517638 CCCGGCCCGAAAATACCC 60.518 66.667 3.71 0.00 0.00 3.69
435 436 2.898343 CCGGCCCGAAAATACCCG 60.898 66.667 3.71 0.00 38.71 5.28
436 437 2.187424 CGGCCCGAAAATACCCGA 59.813 61.111 0.00 0.00 41.34 5.14
437 438 2.175621 CGGCCCGAAAATACCCGAC 61.176 63.158 0.00 0.00 41.34 4.79
438 439 1.820906 GGCCCGAAAATACCCGACC 60.821 63.158 0.00 0.00 0.00 4.79
439 440 1.820906 GCCCGAAAATACCCGACCC 60.821 63.158 0.00 0.00 0.00 4.46
440 441 1.522130 CCCGAAAATACCCGACCCG 60.522 63.158 0.00 0.00 0.00 5.28
441 442 1.516892 CCGAAAATACCCGACCCGA 59.483 57.895 0.00 0.00 0.00 5.14
442 443 0.807275 CCGAAAATACCCGACCCGAC 60.807 60.000 0.00 0.00 0.00 4.79
443 444 0.807275 CGAAAATACCCGACCCGACC 60.807 60.000 0.00 0.00 0.00 4.79
444 445 0.462581 GAAAATACCCGACCCGACCC 60.463 60.000 0.00 0.00 0.00 4.46
445 446 2.242797 AAAATACCCGACCCGACCCG 62.243 60.000 0.00 0.00 0.00 5.28
446 447 3.660422 AATACCCGACCCGACCCGA 62.660 63.158 0.00 0.00 0.00 5.14
474 475 3.014623 ACCCGTGCTTAGATTTTAAGCC 58.985 45.455 14.39 6.84 46.78 4.35
475 476 3.279434 CCCGTGCTTAGATTTTAAGCCT 58.721 45.455 14.39 0.00 46.78 4.58
476 477 4.080751 ACCCGTGCTTAGATTTTAAGCCTA 60.081 41.667 14.39 0.00 46.78 3.93
477 478 4.879545 CCCGTGCTTAGATTTTAAGCCTAA 59.120 41.667 14.39 0.00 46.78 2.69
478 479 5.355910 CCCGTGCTTAGATTTTAAGCCTAAA 59.644 40.000 14.39 0.00 46.78 1.85
479 480 6.458342 CCCGTGCTTAGATTTTAAGCCTAAAG 60.458 42.308 14.39 1.68 46.78 1.85
480 481 6.458342 CCGTGCTTAGATTTTAAGCCTAAAGG 60.458 42.308 14.39 6.10 46.78 3.11
507 508 2.991540 GCTCGGGCCTGCCTTTTT 60.992 61.111 6.73 0.00 36.10 1.94
527 528 2.396590 TCACGATTAAGTGAAGGGGC 57.603 50.000 0.00 0.00 46.81 5.80
528 529 1.065709 TCACGATTAAGTGAAGGGGCC 60.066 52.381 0.00 0.00 46.81 5.80
529 530 0.988832 ACGATTAAGTGAAGGGGCCA 59.011 50.000 4.39 0.00 0.00 5.36
530 531 1.065418 ACGATTAAGTGAAGGGGCCAG 60.065 52.381 4.39 0.00 0.00 4.85
531 532 1.209504 CGATTAAGTGAAGGGGCCAGA 59.790 52.381 4.39 0.00 0.00 3.86
532 533 2.644676 GATTAAGTGAAGGGGCCAGAC 58.355 52.381 4.39 0.00 0.00 3.51
533 534 0.696501 TTAAGTGAAGGGGCCAGACC 59.303 55.000 4.39 0.00 37.93 3.85
563 564 2.264794 CCCGGCGGGCTATATCAC 59.735 66.667 34.87 0.00 35.35 3.06
564 565 2.283529 CCCGGCGGGCTATATCACT 61.284 63.158 34.87 0.00 35.35 3.41
565 566 1.671742 CCGGCGGGCTATATCACTT 59.328 57.895 20.56 0.00 0.00 3.16
566 567 0.670546 CCGGCGGGCTATATCACTTG 60.671 60.000 20.56 0.00 0.00 3.16
567 568 0.670546 CGGCGGGCTATATCACTTGG 60.671 60.000 0.00 0.00 0.00 3.61
568 569 0.396811 GGCGGGCTATATCACTTGGT 59.603 55.000 0.00 0.00 0.00 3.67
569 570 1.621814 GGCGGGCTATATCACTTGGTA 59.378 52.381 0.00 0.00 0.00 3.25
570 571 2.236395 GGCGGGCTATATCACTTGGTAT 59.764 50.000 0.00 0.00 0.00 2.73
571 572 3.449737 GGCGGGCTATATCACTTGGTATA 59.550 47.826 0.00 0.00 0.00 1.47
572 573 4.430908 GCGGGCTATATCACTTGGTATAC 58.569 47.826 0.00 0.00 0.00 1.47
573 574 4.679905 GCGGGCTATATCACTTGGTATACC 60.680 50.000 15.50 15.50 0.00 2.73
599 600 1.838846 GCGATCCTGATGAGGGGGA 60.839 63.158 0.00 0.00 40.25 4.81
600 601 1.825281 GCGATCCTGATGAGGGGGAG 61.825 65.000 0.00 0.00 40.25 4.30
617 618 4.459089 GGAGTCAGGAGCACGCCC 62.459 72.222 0.00 0.00 0.00 6.13
631 632 4.459089 GCCCGTGACCTGCTCCTC 62.459 72.222 0.00 0.00 0.00 3.71
652 653 0.689412 GACAGAGAAGGGGAGGAGGG 60.689 65.000 0.00 0.00 0.00 4.30
698 699 2.042404 GCTGGAGCCTCAGATGGGAG 62.042 65.000 7.94 0.00 36.93 4.30
744 753 3.181501 CCGTCAGTAAGCAGAGAAGAGAG 60.182 52.174 0.00 0.00 0.00 3.20
748 757 5.414454 GTCAGTAAGCAGAGAAGAGAGAGAA 59.586 44.000 0.00 0.00 0.00 2.87
764 773 1.526917 GAAGGATGGGTCATGGGCG 60.527 63.158 0.00 0.00 0.00 6.13
765 774 1.983119 GAAGGATGGGTCATGGGCGA 61.983 60.000 0.00 0.00 0.00 5.54
766 775 1.987807 AAGGATGGGTCATGGGCGAG 61.988 60.000 0.00 0.00 0.00 5.03
767 776 2.443394 GGATGGGTCATGGGCGAGA 61.443 63.158 0.00 0.00 0.00 4.04
768 777 1.070445 GATGGGTCATGGGCGAGAG 59.930 63.158 0.00 0.00 0.00 3.20
769 778 2.388890 GATGGGTCATGGGCGAGAGG 62.389 65.000 0.00 0.00 0.00 3.69
779 788 0.827368 GGGCGAGAGGAGTGATTCTT 59.173 55.000 0.00 0.00 0.00 2.52
902 919 5.918608 TCAATCCTCTTTTTATCCCTCTCG 58.081 41.667 0.00 0.00 0.00 4.04
920 937 4.113815 CCAGGCGCCTTGGATCCA 62.114 66.667 30.60 11.44 0.00 3.41
967 1006 1.480954 TGCTCAGATTACCTTCCCGTC 59.519 52.381 0.00 0.00 0.00 4.79
970 1009 1.108776 CAGATTACCTTCCCGTCGGA 58.891 55.000 14.39 0.00 35.88 4.55
1056 1095 1.331756 AGCAGTTCACAAGAAAGCACG 59.668 47.619 0.00 0.00 38.68 5.34
1058 1097 2.477863 GCAGTTCACAAGAAAGCACGTT 60.478 45.455 0.00 0.00 37.15 3.99
1064 1103 1.400494 ACAAGAAAGCACGTTGACACC 59.600 47.619 0.00 0.00 0.00 4.16
1095 1173 1.676006 GTAAACATCCCAATCCCAGCG 59.324 52.381 0.00 0.00 0.00 5.18
1110 1188 2.605030 CCAGCGACAGAAGAGAAGAAG 58.395 52.381 0.00 0.00 0.00 2.85
1115 1193 3.305744 GCGACAGAAGAGAAGAAGGTTCT 60.306 47.826 0.00 0.00 39.74 3.01
1306 1384 1.540580 GGCTTTCCCGCTACTACATCC 60.541 57.143 0.00 0.00 0.00 3.51
1327 1405 3.274288 CAAGCCCTTGAGGTATCTGTTC 58.726 50.000 1.83 0.00 42.93 3.18
1333 1411 5.335976 GCCCTTGAGGTATCTGTTCTTTTTG 60.336 44.000 0.00 0.00 38.26 2.44
1338 1416 7.259290 TGAGGTATCTGTTCTTTTTGTGAAC 57.741 36.000 0.00 0.00 42.77 3.18
1340 1418 5.820947 AGGTATCTGTTCTTTTTGTGAACGT 59.179 36.000 0.00 0.00 44.67 3.99
1342 1420 7.496591 AGGTATCTGTTCTTTTTGTGAACGTTA 59.503 33.333 0.00 0.00 44.67 3.18
1343 1421 7.585210 GGTATCTGTTCTTTTTGTGAACGTTAC 59.415 37.037 0.00 0.74 44.67 2.50
1344 1422 6.730960 TCTGTTCTTTTTGTGAACGTTACT 57.269 33.333 0.00 0.00 44.67 2.24
1355 1434 3.000523 GTGAACGTTACTTTGAGCGTCAA 59.999 43.478 0.00 0.00 36.51 3.18
1447 1544 5.068460 GCCTGTGTATCTGAGTAGTCTGATT 59.932 44.000 20.96 8.99 40.69 2.57
1542 1641 1.615392 AGGATGCACAAAGGAACAAGC 59.385 47.619 0.00 0.00 0.00 4.01
1571 1673 6.597672 TGGACGCTCTGTATGTTTATGAAAAT 59.402 34.615 0.00 0.00 0.00 1.82
1610 1712 5.440610 GTCAAACAGGATCCTGAATGGTAT 58.559 41.667 41.91 19.56 46.30 2.73
1683 1785 3.055819 AGTGCTTCGTGATGATGTAGGTT 60.056 43.478 0.00 0.00 0.00 3.50
1758 1866 9.528018 CAAATTTGTTTCTACAACCACAGTTAT 57.472 29.630 10.15 0.00 43.66 1.89
1783 1893 6.769512 TCTGCATTCTGTTTAAACTACTCCT 58.230 36.000 18.72 0.00 0.00 3.69
1840 2052 9.574516 GTTGGACCATGATTATACTCCTTATTT 57.425 33.333 0.00 0.00 0.00 1.40
1899 2115 7.395190 TGATTAACTCAGCAAGTGCATAATT 57.605 32.000 6.00 0.00 45.16 1.40
1915 2131 8.526147 AGTGCATAATTTTTCTTTATGTGCTCT 58.474 29.630 0.00 0.00 38.65 4.09
2333 2552 1.061799 GATTGCGCTGCAGTTTCGTG 61.062 55.000 16.64 0.00 40.61 4.35
2404 2623 2.793278 GCCTATTAATTTGGCGGGTG 57.207 50.000 13.88 0.00 37.11 4.61
2405 2624 1.269569 GCCTATTAATTTGGCGGGTGC 60.270 52.381 13.88 0.00 37.11 5.01
2406 2625 2.028130 CCTATTAATTTGGCGGGTGCA 58.972 47.619 0.00 0.00 45.35 4.57
2407 2626 2.428890 CCTATTAATTTGGCGGGTGCAA 59.571 45.455 0.00 0.00 45.35 4.08
2408 2627 3.069443 CCTATTAATTTGGCGGGTGCAAT 59.931 43.478 0.00 0.00 45.35 3.56
2409 2628 4.279671 CCTATTAATTTGGCGGGTGCAATA 59.720 41.667 0.00 0.00 45.35 1.90
2639 2859 4.154918 GCTAGCTTTGTATGCTTGTTGACT 59.845 41.667 7.70 0.00 41.46 3.41
2795 3015 9.948964 AGTTTGGTAAAATATAACGTAGGTTCT 57.051 29.630 3.67 0.00 37.58 3.01
2804 3024 9.674824 AAATATAACGTAGGTTCTTCTACATCG 57.325 33.333 3.67 0.00 39.51 3.84
2836 3056 6.446318 TGTTCATTTGGCTTCATCAACTAAC 58.554 36.000 0.00 0.00 0.00 2.34
2999 3223 4.462483 TGCCTGGTTGGAATCTTTTACATC 59.538 41.667 0.00 0.00 38.35 3.06
3084 3308 3.257375 GGAGGCCGTTAAGAAAATGGTTT 59.743 43.478 0.00 0.00 0.00 3.27
3185 4832 5.218139 GCTGAAGTGGAAGTCTGATTTTTG 58.782 41.667 0.00 0.00 0.00 2.44
3376 5045 1.769026 CAGCAGCCTAGAGGTCACTA 58.231 55.000 0.00 0.00 37.57 2.74
3411 5080 2.794350 CGAAAACCATGGTGAAGCAAAC 59.206 45.455 20.60 3.83 0.00 2.93
3414 5083 1.442520 CCATGGTGAAGCAAACGCG 60.443 57.895 3.53 3.53 0.00 6.01
3436 5106 1.668101 AAGAGTAGCCGAGGGAAGCG 61.668 60.000 0.00 0.00 0.00 4.68
3466 5144 1.810412 GCGAAGAGTGGTTGTTGGTCT 60.810 52.381 0.00 0.00 0.00 3.85
3502 5181 1.593787 CGTGCTCTGTCCCATGAGT 59.406 57.895 0.00 0.00 33.22 3.41
3508 5187 2.507484 CTCTGTCCCATGAGTTGCAAA 58.493 47.619 0.00 0.00 0.00 3.68
3509 5188 2.486982 CTCTGTCCCATGAGTTGCAAAG 59.513 50.000 0.00 0.00 0.00 2.77
3510 5189 2.106338 TCTGTCCCATGAGTTGCAAAGA 59.894 45.455 0.00 0.00 0.00 2.52
3511 5190 2.486982 CTGTCCCATGAGTTGCAAAGAG 59.513 50.000 0.00 0.00 0.00 2.85
3512 5191 2.158623 TGTCCCATGAGTTGCAAAGAGT 60.159 45.455 0.00 0.00 0.00 3.24
3513 5192 2.227388 GTCCCATGAGTTGCAAAGAGTG 59.773 50.000 0.00 0.00 0.00 3.51
3547 5226 4.284123 GCCATGAGCACAGAACGA 57.716 55.556 0.00 0.00 42.97 3.85
3553 5232 1.795768 TGAGCACAGAACGATTGGTC 58.204 50.000 0.00 0.00 38.08 4.02
3561 5240 0.037605 GAACGATTGGTCTCCGGTGT 60.038 55.000 0.00 0.00 0.00 4.16
3575 5254 1.346722 CCGGTGTTGTTTCTACCCTCT 59.653 52.381 0.00 0.00 0.00 3.69
3578 5257 2.152016 GTGTTGTTTCTACCCTCTGCC 58.848 52.381 0.00 0.00 0.00 4.85
3581 5260 1.742308 TGTTTCTACCCTCTGCCCTT 58.258 50.000 0.00 0.00 0.00 3.95
3611 5291 4.480386 GCTGCTGGCTCTTTTATGATAC 57.520 45.455 0.00 0.00 38.06 2.24
3615 5295 5.065914 TGCTGGCTCTTTTATGATACCATC 58.934 41.667 0.00 0.00 34.31 3.51
3637 5320 3.259374 CGTCCCTATCCTATGTGCTCATT 59.741 47.826 6.57 0.00 35.70 2.57
3638 5321 4.619394 CGTCCCTATCCTATGTGCTCATTC 60.619 50.000 6.57 0.00 35.70 2.67
3651 5334 1.386533 CTCATTCATCCAGGGCACAC 58.613 55.000 0.00 0.00 0.00 3.82
3652 5335 0.994247 TCATTCATCCAGGGCACACT 59.006 50.000 0.00 0.00 0.00 3.55
3653 5336 1.355381 TCATTCATCCAGGGCACACTT 59.645 47.619 0.00 0.00 0.00 3.16
3664 5361 4.384208 CCAGGGCACACTTTATAGCTTAGT 60.384 45.833 0.00 0.00 0.00 2.24
3695 5397 3.060473 GCGTAGAACTTATTGGCGATGAC 60.060 47.826 0.00 0.00 0.00 3.06
3753 5455 3.472263 GCATCGTTTGCGGAAAACT 57.528 47.368 2.79 0.00 45.10 2.66
3755 5457 3.131240 GCATCGTTTGCGGAAAACTAT 57.869 42.857 2.79 1.62 45.10 2.12
3774 5488 9.574516 AAAACTATCAGGTCACTAATCTTTTGT 57.425 29.630 0.00 0.00 0.00 2.83
3839 5553 5.508567 TGATCAGGTGATTTGGCTCATTTA 58.491 37.500 0.00 0.00 34.37 1.40
3863 5577 1.202651 ACTTTCTGACAAGTGGGACCG 60.203 52.381 5.01 0.00 35.57 4.79
3902 5618 8.214721 TGACTTGACATAACATTTACACACAA 57.785 30.769 0.00 0.00 0.00 3.33
3911 5629 8.573035 CATAACATTTACACACAAACCCTTAGT 58.427 33.333 0.00 0.00 0.00 2.24
3930 5648 9.031360 CCCTTAGTTCTAAAAAGAAAAAGCAAC 57.969 33.333 0.00 0.00 0.00 4.17
4081 5804 1.298014 GCCTGCTGTAGACCAAGCT 59.702 57.895 0.00 0.00 0.00 3.74
4093 5816 1.304713 CCAAGCTGCACATCCCCTT 60.305 57.895 1.02 0.00 0.00 3.95
4098 5821 1.034292 GCTGCACATCCCCTTCTTCC 61.034 60.000 0.00 0.00 0.00 3.46
4148 5871 4.794439 CCAGACGCGATGTGCCGA 62.794 66.667 15.93 0.00 42.08 5.54
4344 6067 4.595538 ACGGCGGCGAACTTGTGA 62.596 61.111 38.93 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.974275 CACAACAAGACAATTGCTCAAGAG 59.026 41.667 5.05 0.00 0.00 2.85
2 3 4.639755 TCACAACAAGACAATTGCTCAAGA 59.360 37.500 5.05 0.00 0.00 3.02
3 4 4.736793 GTCACAACAAGACAATTGCTCAAG 59.263 41.667 5.05 2.56 36.06 3.02
4 5 4.671377 GTCACAACAAGACAATTGCTCAA 58.329 39.130 5.05 0.00 36.06 3.02
5 6 3.242706 CGTCACAACAAGACAATTGCTCA 60.243 43.478 5.05 0.00 35.77 4.26
6 7 3.242739 ACGTCACAACAAGACAATTGCTC 60.243 43.478 5.05 2.73 35.77 4.26
7 8 2.682856 ACGTCACAACAAGACAATTGCT 59.317 40.909 5.05 0.69 35.77 3.91
8 9 3.035942 GACGTCACAACAAGACAATTGC 58.964 45.455 11.55 0.00 35.77 3.56
9 10 3.312421 AGGACGTCACAACAAGACAATTG 59.688 43.478 18.91 3.24 35.77 2.32
10 11 3.541632 AGGACGTCACAACAAGACAATT 58.458 40.909 18.91 0.00 35.77 2.32
11 12 3.194005 AGGACGTCACAACAAGACAAT 57.806 42.857 18.91 0.00 35.77 2.71
12 13 2.684001 AGGACGTCACAACAAGACAA 57.316 45.000 18.91 0.00 35.77 3.18
13 14 2.546778 GAAGGACGTCACAACAAGACA 58.453 47.619 18.91 0.00 35.77 3.41
14 15 1.521423 CGAAGGACGTCACAACAAGAC 59.479 52.381 18.91 0.00 37.22 3.01
15 16 1.406180 TCGAAGGACGTCACAACAAGA 59.594 47.619 18.91 4.18 43.13 3.02
16 17 1.787155 CTCGAAGGACGTCACAACAAG 59.213 52.381 18.91 3.42 43.13 3.16
17 18 1.135527 ACTCGAAGGACGTCACAACAA 59.864 47.619 18.91 0.00 43.13 2.83
18 19 0.742505 ACTCGAAGGACGTCACAACA 59.257 50.000 18.91 0.00 43.13 3.33
19 20 2.582687 CTACTCGAAGGACGTCACAAC 58.417 52.381 18.91 0.00 43.13 3.32
20 21 1.538512 CCTACTCGAAGGACGTCACAA 59.461 52.381 18.91 0.00 43.13 3.33
21 22 1.162698 CCTACTCGAAGGACGTCACA 58.837 55.000 18.91 0.00 43.13 3.58
22 23 1.163554 ACCTACTCGAAGGACGTCAC 58.836 55.000 18.91 6.91 43.13 3.67
23 24 1.901591 AACCTACTCGAAGGACGTCA 58.098 50.000 18.91 0.00 43.13 4.35
24 25 4.425577 TTAAACCTACTCGAAGGACGTC 57.574 45.455 10.18 7.13 43.13 4.34
25 26 4.853924 TTTAAACCTACTCGAAGGACGT 57.146 40.909 10.18 0.00 43.13 4.34
26 27 5.909210 GTTTTTAAACCTACTCGAAGGACG 58.091 41.667 10.18 0.00 39.15 4.79
40 41 3.035251 CGGTTCGGTTCGGTTTTTAAAC 58.965 45.455 0.00 0.00 38.17 2.01
41 42 2.939103 TCGGTTCGGTTCGGTTTTTAAA 59.061 40.909 0.00 0.00 0.00 1.52
42 43 2.555199 TCGGTTCGGTTCGGTTTTTAA 58.445 42.857 0.00 0.00 0.00 1.52
43 44 2.231215 TCGGTTCGGTTCGGTTTTTA 57.769 45.000 0.00 0.00 0.00 1.52
44 45 1.331447 CTTCGGTTCGGTTCGGTTTTT 59.669 47.619 0.00 0.00 0.00 1.94
45 46 0.939419 CTTCGGTTCGGTTCGGTTTT 59.061 50.000 0.00 0.00 0.00 2.43
46 47 0.881600 CCTTCGGTTCGGTTCGGTTT 60.882 55.000 0.00 0.00 0.00 3.27
47 48 1.301165 CCTTCGGTTCGGTTCGGTT 60.301 57.895 0.00 0.00 0.00 4.44
48 49 2.341176 CCTTCGGTTCGGTTCGGT 59.659 61.111 0.00 0.00 0.00 4.69
49 50 1.735559 GACCTTCGGTTCGGTTCGG 60.736 63.158 0.00 0.00 35.25 4.30
50 51 1.007336 CAGACCTTCGGTTCGGTTCG 61.007 60.000 0.00 0.00 35.25 3.95
51 52 0.316204 TCAGACCTTCGGTTCGGTTC 59.684 55.000 0.00 0.00 35.25 3.62
52 53 0.974383 ATCAGACCTTCGGTTCGGTT 59.026 50.000 0.00 0.00 35.25 4.44
53 54 0.246635 CATCAGACCTTCGGTTCGGT 59.753 55.000 0.00 0.00 35.25 4.69
54 55 0.530744 TCATCAGACCTTCGGTTCGG 59.469 55.000 0.00 0.00 35.25 4.30
55 56 2.363788 TTCATCAGACCTTCGGTTCG 57.636 50.000 0.00 0.00 35.25 3.95
74 75 2.700722 AACACCGGGCAACAATTTTT 57.299 40.000 6.32 0.00 39.74 1.94
75 76 2.700722 AAACACCGGGCAACAATTTT 57.299 40.000 6.32 0.00 39.74 1.82
76 77 3.493524 CCTTAAACACCGGGCAACAATTT 60.494 43.478 6.32 0.00 39.74 1.82
77 78 2.036604 CCTTAAACACCGGGCAACAATT 59.963 45.455 6.32 0.00 39.74 2.32
78 79 1.616374 CCTTAAACACCGGGCAACAAT 59.384 47.619 6.32 0.00 39.74 2.71
79 80 1.033574 CCTTAAACACCGGGCAACAA 58.966 50.000 6.32 0.00 39.74 2.83
80 81 0.106619 ACCTTAAACACCGGGCAACA 60.107 50.000 6.32 0.00 39.74 3.33
81 82 0.312729 CACCTTAAACACCGGGCAAC 59.687 55.000 6.32 0.00 0.00 4.17
82 83 0.106619 ACACCTTAAACACCGGGCAA 60.107 50.000 6.32 0.00 0.00 4.52
83 84 0.763652 TACACCTTAAACACCGGGCA 59.236 50.000 6.32 0.00 0.00 5.36
84 85 1.159285 GTACACCTTAAACACCGGGC 58.841 55.000 6.32 0.00 0.00 6.13
85 86 1.812235 GGTACACCTTAAACACCGGG 58.188 55.000 6.32 0.00 0.00 5.73
86 87 1.431496 CGGTACACCTTAAACACCGG 58.569 55.000 0.00 0.00 46.43 5.28
88 89 4.198028 AGATCGGTACACCTTAAACACC 57.802 45.455 0.00 0.00 0.00 4.16
89 90 6.549912 AAAAGATCGGTACACCTTAAACAC 57.450 37.500 0.00 0.00 0.00 3.32
90 91 7.444299 ACTAAAAGATCGGTACACCTTAAACA 58.556 34.615 0.00 0.00 0.00 2.83
91 92 7.895975 ACTAAAAGATCGGTACACCTTAAAC 57.104 36.000 0.00 0.00 0.00 2.01
92 93 9.995003 TTAACTAAAAGATCGGTACACCTTAAA 57.005 29.630 0.00 0.00 0.00 1.52
93 94 9.995003 TTTAACTAAAAGATCGGTACACCTTAA 57.005 29.630 0.00 0.00 0.00 1.85
94 95 9.995003 TTTTAACTAAAAGATCGGTACACCTTA 57.005 29.630 0.00 0.00 32.00 2.69
95 96 8.907222 TTTTAACTAAAAGATCGGTACACCTT 57.093 30.769 0.00 0.00 32.00 3.50
96 97 8.907222 TTTTTAACTAAAAGATCGGTACACCT 57.093 30.769 0.00 0.00 36.62 4.00
138 139 4.276431 CCTTGCCTTGTTGATGCAATTTTT 59.724 37.500 0.00 0.00 43.38 1.94
139 140 3.816523 CCTTGCCTTGTTGATGCAATTTT 59.183 39.130 0.00 0.00 43.38 1.82
140 141 3.404899 CCTTGCCTTGTTGATGCAATTT 58.595 40.909 0.00 0.00 43.38 1.82
141 142 2.872842 GCCTTGCCTTGTTGATGCAATT 60.873 45.455 0.00 0.00 43.38 2.32
142 143 1.338389 GCCTTGCCTTGTTGATGCAAT 60.338 47.619 0.00 0.00 43.38 3.56
143 144 0.033781 GCCTTGCCTTGTTGATGCAA 59.966 50.000 0.00 0.00 42.28 4.08
144 145 1.114119 TGCCTTGCCTTGTTGATGCA 61.114 50.000 0.00 0.00 0.00 3.96
145 146 0.248289 ATGCCTTGCCTTGTTGATGC 59.752 50.000 0.00 0.00 0.00 3.91
146 147 1.274167 ACATGCCTTGCCTTGTTGATG 59.726 47.619 0.00 0.00 0.00 3.07
147 148 1.636148 ACATGCCTTGCCTTGTTGAT 58.364 45.000 0.00 0.00 0.00 2.57
148 149 1.412079 AACATGCCTTGCCTTGTTGA 58.588 45.000 0.00 0.00 34.34 3.18
149 150 3.383620 TTAACATGCCTTGCCTTGTTG 57.616 42.857 12.14 0.00 35.65 3.33
150 151 3.244181 CCTTTAACATGCCTTGCCTTGTT 60.244 43.478 0.00 8.77 37.53 2.83
151 152 2.299867 CCTTTAACATGCCTTGCCTTGT 59.700 45.455 0.00 0.00 0.00 3.16
152 153 2.932187 GCCTTTAACATGCCTTGCCTTG 60.932 50.000 0.00 0.00 0.00 3.61
153 154 1.276138 GCCTTTAACATGCCTTGCCTT 59.724 47.619 0.00 0.00 0.00 4.35
154 155 0.897621 GCCTTTAACATGCCTTGCCT 59.102 50.000 0.00 0.00 0.00 4.75
155 156 0.108186 GGCCTTTAACATGCCTTGCC 60.108 55.000 0.00 0.00 42.01 4.52
156 157 0.607620 TGGCCTTTAACATGCCTTGC 59.392 50.000 3.32 0.00 45.56 4.01
157 158 3.615224 ATTGGCCTTTAACATGCCTTG 57.385 42.857 3.32 0.00 45.56 3.61
158 159 4.081142 GGTTATTGGCCTTTAACATGCCTT 60.081 41.667 22.00 2.19 45.56 4.35
159 160 3.450817 GGTTATTGGCCTTTAACATGCCT 59.549 43.478 22.00 0.00 45.56 4.75
160 161 3.196685 TGGTTATTGGCCTTTAACATGCC 59.803 43.478 22.00 10.96 45.56 4.40
161 162 4.464069 TGGTTATTGGCCTTTAACATGC 57.536 40.909 22.00 11.02 31.38 4.06
162 163 6.036577 AGTTGGTTATTGGCCTTTAACATG 57.963 37.500 22.00 0.00 31.38 3.21
163 164 6.379988 CCTAGTTGGTTATTGGCCTTTAACAT 59.620 38.462 22.00 11.91 31.38 2.71
164 165 5.712917 CCTAGTTGGTTATTGGCCTTTAACA 59.287 40.000 22.00 5.17 31.38 2.41
165 166 5.393787 GCCTAGTTGGTTATTGGCCTTTAAC 60.394 44.000 15.88 15.88 38.35 2.01
166 167 4.707934 GCCTAGTTGGTTATTGGCCTTTAA 59.292 41.667 3.32 0.00 38.35 1.52
167 168 4.017867 AGCCTAGTTGGTTATTGGCCTTTA 60.018 41.667 3.32 0.00 41.08 1.85
168 169 3.096852 GCCTAGTTGGTTATTGGCCTTT 58.903 45.455 3.32 0.00 38.35 3.11
169 170 2.311841 AGCCTAGTTGGTTATTGGCCTT 59.688 45.455 3.32 0.00 41.08 4.35
170 171 1.923148 AGCCTAGTTGGTTATTGGCCT 59.077 47.619 3.32 0.00 41.08 5.19
171 172 2.437085 AGCCTAGTTGGTTATTGGCC 57.563 50.000 0.00 0.00 41.08 5.36
172 173 6.544564 TGTTATTAGCCTAGTTGGTTATTGGC 59.455 38.462 0.00 0.00 40.54 4.52
173 174 8.514330 TTGTTATTAGCCTAGTTGGTTATTGG 57.486 34.615 0.00 0.00 38.35 3.16
177 178 9.523168 ACAAATTGTTATTAGCCTAGTTGGTTA 57.477 29.630 0.00 0.00 38.35 2.85
178 179 8.303876 CACAAATTGTTATTAGCCTAGTTGGTT 58.696 33.333 0.00 0.00 38.35 3.67
179 180 7.668052 TCACAAATTGTTATTAGCCTAGTTGGT 59.332 33.333 0.00 0.00 38.35 3.67
180 181 8.050778 TCACAAATTGTTATTAGCCTAGTTGG 57.949 34.615 0.00 0.00 39.35 3.77
222 223 9.897744 CCTTAATCAAATGAATGCACGTAATAT 57.102 29.630 0.00 0.00 0.00 1.28
223 224 7.860373 GCCTTAATCAAATGAATGCACGTAATA 59.140 33.333 0.00 0.00 0.00 0.98
224 225 6.697019 GCCTTAATCAAATGAATGCACGTAAT 59.303 34.615 0.00 0.00 0.00 1.89
225 226 6.033341 GCCTTAATCAAATGAATGCACGTAA 58.967 36.000 0.00 0.00 0.00 3.18
226 227 5.449862 GGCCTTAATCAAATGAATGCACGTA 60.450 40.000 0.00 0.00 0.00 3.57
227 228 4.423732 GCCTTAATCAAATGAATGCACGT 58.576 39.130 0.00 0.00 0.00 4.49
228 229 3.798337 GGCCTTAATCAAATGAATGCACG 59.202 43.478 0.00 0.00 0.00 5.34
229 230 4.757594 TGGCCTTAATCAAATGAATGCAC 58.242 39.130 3.32 0.00 0.00 4.57
230 231 5.046448 AGTTGGCCTTAATCAAATGAATGCA 60.046 36.000 3.32 0.00 0.00 3.96
231 232 5.422145 AGTTGGCCTTAATCAAATGAATGC 58.578 37.500 3.32 0.00 0.00 3.56
232 233 7.910441 AAAGTTGGCCTTAATCAAATGAATG 57.090 32.000 3.32 0.00 31.48 2.67
233 234 8.922931 AAAAAGTTGGCCTTAATCAAATGAAT 57.077 26.923 3.32 0.00 31.48 2.57
234 235 9.838339 TTAAAAAGTTGGCCTTAATCAAATGAA 57.162 25.926 3.32 0.00 31.48 2.57
235 236 9.838339 TTTAAAAAGTTGGCCTTAATCAAATGA 57.162 25.926 3.32 0.00 31.48 2.57
246 247 9.772973 CTTAAGGTATTTTTAAAAAGTTGGCCT 57.227 29.630 17.72 15.30 0.00 5.19
247 248 9.550406 ACTTAAGGTATTTTTAAAAAGTTGGCC 57.450 29.630 17.72 13.71 0.00 5.36
278 279 3.312828 CCGGTTCATTTGCGATGAAAAA 58.687 40.909 14.60 0.00 39.43 1.94
279 280 2.924454 GCCGGTTCATTTGCGATGAAAA 60.924 45.455 14.60 0.00 39.43 2.29
280 281 1.402194 GCCGGTTCATTTGCGATGAAA 60.402 47.619 14.60 0.00 39.43 2.69
281 282 0.170116 GCCGGTTCATTTGCGATGAA 59.830 50.000 1.90 10.30 35.86 2.57
282 283 0.957888 TGCCGGTTCATTTGCGATGA 60.958 50.000 1.90 0.00 0.00 2.92
283 284 0.523968 CTGCCGGTTCATTTGCGATG 60.524 55.000 1.90 0.00 0.00 3.84
284 285 0.960364 ACTGCCGGTTCATTTGCGAT 60.960 50.000 1.90 0.00 0.00 4.58
285 286 1.573829 GACTGCCGGTTCATTTGCGA 61.574 55.000 1.90 0.00 0.00 5.10
286 287 1.154225 GACTGCCGGTTCATTTGCG 60.154 57.895 1.90 0.00 0.00 4.85
287 288 1.212751 GGACTGCCGGTTCATTTGC 59.787 57.895 1.90 0.00 0.00 3.68
288 289 0.958091 TTGGACTGCCGGTTCATTTG 59.042 50.000 1.90 0.00 32.76 2.32
289 290 1.818674 GATTGGACTGCCGGTTCATTT 59.181 47.619 1.90 0.00 32.76 2.32
290 291 1.271871 TGATTGGACTGCCGGTTCATT 60.272 47.619 1.90 0.00 32.76 2.57
291 292 0.327924 TGATTGGACTGCCGGTTCAT 59.672 50.000 1.90 0.00 32.76 2.57
292 293 0.321564 CTGATTGGACTGCCGGTTCA 60.322 55.000 1.90 0.00 36.79 3.18
293 294 0.321653 ACTGATTGGACTGCCGGTTC 60.322 55.000 1.90 0.00 36.79 3.62
294 295 0.981183 TACTGATTGGACTGCCGGTT 59.019 50.000 1.90 0.00 36.79 4.44
295 296 0.981183 TTACTGATTGGACTGCCGGT 59.019 50.000 1.90 0.00 36.79 5.28
296 297 2.107950 TTTACTGATTGGACTGCCGG 57.892 50.000 0.00 0.00 36.79 6.13
297 298 2.159517 GCTTTTACTGATTGGACTGCCG 60.160 50.000 0.00 0.00 36.79 5.69
298 299 2.164422 GGCTTTTACTGATTGGACTGCC 59.836 50.000 0.00 0.00 0.00 4.85
299 300 3.084786 AGGCTTTTACTGATTGGACTGC 58.915 45.455 0.00 0.00 0.00 4.40
300 301 4.326826 TCAGGCTTTTACTGATTGGACTG 58.673 43.478 0.00 0.00 39.87 3.51
301 302 4.640771 TCAGGCTTTTACTGATTGGACT 57.359 40.909 0.00 0.00 39.87 3.85
302 303 4.082733 GGTTCAGGCTTTTACTGATTGGAC 60.083 45.833 0.00 0.00 43.82 4.02
303 304 4.079253 GGTTCAGGCTTTTACTGATTGGA 58.921 43.478 0.00 0.00 43.82 3.53
304 305 3.119849 CGGTTCAGGCTTTTACTGATTGG 60.120 47.826 0.00 0.00 43.82 3.16
305 306 3.751175 TCGGTTCAGGCTTTTACTGATTG 59.249 43.478 0.00 0.00 43.82 2.67
306 307 4.015872 TCGGTTCAGGCTTTTACTGATT 57.984 40.909 0.00 0.00 43.82 2.57
307 308 3.695830 TCGGTTCAGGCTTTTACTGAT 57.304 42.857 0.00 0.00 43.82 2.90
308 309 3.478857 TTCGGTTCAGGCTTTTACTGA 57.521 42.857 0.00 0.00 42.81 3.41
309 310 3.609409 GCTTTCGGTTCAGGCTTTTACTG 60.609 47.826 0.00 0.00 37.30 2.74
310 311 2.552743 GCTTTCGGTTCAGGCTTTTACT 59.447 45.455 0.00 0.00 0.00 2.24
311 312 2.351447 GGCTTTCGGTTCAGGCTTTTAC 60.351 50.000 0.00 0.00 32.83 2.01
312 313 1.883926 GGCTTTCGGTTCAGGCTTTTA 59.116 47.619 0.00 0.00 32.83 1.52
313 314 0.673985 GGCTTTCGGTTCAGGCTTTT 59.326 50.000 0.00 0.00 32.83 2.27
314 315 0.178990 AGGCTTTCGGTTCAGGCTTT 60.179 50.000 0.00 0.00 43.11 3.51
315 316 0.606673 GAGGCTTTCGGTTCAGGCTT 60.607 55.000 0.00 0.00 45.51 4.35
316 317 3.161557 AGGCTTTCGGTTCAGGCT 58.838 55.556 0.00 0.00 40.96 4.58
317 318 2.391389 CGAGGCTTTCGGTTCAGGC 61.391 63.158 0.00 0.00 45.54 4.85
318 319 3.876300 CGAGGCTTTCGGTTCAGG 58.124 61.111 0.00 0.00 45.54 3.86
326 327 0.942252 ACAAAACCGACGAGGCTTTC 59.058 50.000 0.00 0.00 46.52 2.62
327 328 1.332686 GAACAAAACCGACGAGGCTTT 59.667 47.619 0.00 0.00 46.52 3.51
328 329 0.942252 GAACAAAACCGACGAGGCTT 59.058 50.000 0.00 0.00 46.52 4.35
329 330 0.883370 GGAACAAAACCGACGAGGCT 60.883 55.000 0.00 0.00 46.52 4.58
330 331 0.883370 AGGAACAAAACCGACGAGGC 60.883 55.000 0.00 0.00 46.52 4.70
332 333 3.685836 AAAAGGAACAAAACCGACGAG 57.314 42.857 0.00 0.00 0.00 4.18
333 334 5.557891 TTAAAAAGGAACAAAACCGACGA 57.442 34.783 0.00 0.00 0.00 4.20
334 335 5.801444 AGTTTAAAAAGGAACAAAACCGACG 59.199 36.000 0.00 0.00 31.87 5.12
335 336 8.748582 CATAGTTTAAAAAGGAACAAAACCGAC 58.251 33.333 0.00 0.00 31.87 4.79
336 337 7.435784 GCATAGTTTAAAAAGGAACAAAACCGA 59.564 33.333 0.00 0.00 31.87 4.69
337 338 7.306925 GGCATAGTTTAAAAAGGAACAAAACCG 60.307 37.037 0.00 0.00 31.87 4.44
338 339 7.496263 TGGCATAGTTTAAAAAGGAACAAAACC 59.504 33.333 0.00 0.00 31.87 3.27
339 340 8.426881 TGGCATAGTTTAAAAAGGAACAAAAC 57.573 30.769 0.00 0.00 0.00 2.43
340 341 9.267084 GATGGCATAGTTTAAAAAGGAACAAAA 57.733 29.630 0.00 0.00 0.00 2.44
341 342 7.875554 GGATGGCATAGTTTAAAAAGGAACAAA 59.124 33.333 0.00 0.00 0.00 2.83
342 343 7.234577 AGGATGGCATAGTTTAAAAAGGAACAA 59.765 33.333 0.00 0.00 0.00 2.83
343 344 6.723977 AGGATGGCATAGTTTAAAAAGGAACA 59.276 34.615 0.00 0.00 0.00 3.18
344 345 7.170393 AGGATGGCATAGTTTAAAAAGGAAC 57.830 36.000 0.00 0.00 0.00 3.62
345 346 7.453126 TGAAGGATGGCATAGTTTAAAAAGGAA 59.547 33.333 0.00 0.00 0.00 3.36
346 347 6.951198 TGAAGGATGGCATAGTTTAAAAAGGA 59.049 34.615 0.00 0.00 0.00 3.36
347 348 7.169158 TGAAGGATGGCATAGTTTAAAAAGG 57.831 36.000 0.00 0.00 0.00 3.11
348 349 9.090692 CATTGAAGGATGGCATAGTTTAAAAAG 57.909 33.333 0.00 0.00 0.00 2.27
349 350 7.548780 GCATTGAAGGATGGCATAGTTTAAAAA 59.451 33.333 0.00 0.00 0.00 1.94
350 351 7.041107 GCATTGAAGGATGGCATAGTTTAAAA 58.959 34.615 0.00 0.00 0.00 1.52
351 352 6.572519 GCATTGAAGGATGGCATAGTTTAAA 58.427 36.000 0.00 0.00 0.00 1.52
352 353 6.147864 GCATTGAAGGATGGCATAGTTTAA 57.852 37.500 0.00 0.41 0.00 1.52
353 354 5.772825 GCATTGAAGGATGGCATAGTTTA 57.227 39.130 0.00 0.00 0.00 2.01
354 355 4.660789 GCATTGAAGGATGGCATAGTTT 57.339 40.909 0.00 0.00 0.00 2.66
362 363 0.394216 TGTCGGGCATTGAAGGATGG 60.394 55.000 0.00 0.00 0.00 3.51
363 364 1.683943 ATGTCGGGCATTGAAGGATG 58.316 50.000 0.00 0.00 33.14 3.51
364 365 2.442236 AATGTCGGGCATTGAAGGAT 57.558 45.000 7.09 0.00 45.35 3.24
365 366 2.238646 ACTAATGTCGGGCATTGAAGGA 59.761 45.455 17.61 0.00 46.40 3.36
366 367 2.614057 GACTAATGTCGGGCATTGAAGG 59.386 50.000 17.61 7.72 46.40 3.46
367 368 2.614057 GGACTAATGTCGGGCATTGAAG 59.386 50.000 17.61 10.37 46.40 3.02
368 369 2.238646 AGGACTAATGTCGGGCATTGAA 59.761 45.455 17.61 0.00 46.40 2.69
369 370 1.837439 AGGACTAATGTCGGGCATTGA 59.163 47.619 17.61 1.89 46.40 2.57
370 371 1.942657 CAGGACTAATGTCGGGCATTG 59.057 52.381 17.61 9.98 46.40 2.82
372 373 0.469917 CCAGGACTAATGTCGGGCAT 59.530 55.000 0.00 0.00 43.79 4.40
373 374 1.904771 CCAGGACTAATGTCGGGCA 59.095 57.895 0.00 0.00 43.79 5.36
374 375 4.857251 CCAGGACTAATGTCGGGC 57.143 61.111 0.00 0.00 43.79 6.13
375 376 1.146263 GGCCAGGACTAATGTCGGG 59.854 63.158 0.00 0.00 43.79 5.14
376 377 0.469917 ATGGCCAGGACTAATGTCGG 59.530 55.000 13.05 0.00 43.79 4.79
377 378 1.586422 CATGGCCAGGACTAATGTCG 58.414 55.000 13.35 0.00 43.79 4.35
378 379 1.477558 CCCATGGCCAGGACTAATGTC 60.478 57.143 21.32 0.00 42.22 3.06
379 380 0.552848 CCCATGGCCAGGACTAATGT 59.447 55.000 21.32 0.00 0.00 2.71
380 381 0.825010 GCCCATGGCCAGGACTAATG 60.825 60.000 21.32 6.06 44.06 1.90
381 382 1.538666 GCCCATGGCCAGGACTAAT 59.461 57.895 21.32 0.00 44.06 1.73
382 383 3.006677 GCCCATGGCCAGGACTAA 58.993 61.111 21.32 0.00 44.06 2.24
398 399 3.219198 CTATTTGGGCCGGGCTGC 61.219 66.667 28.80 12.94 0.00 5.25
399 400 1.823899 GTCTATTTGGGCCGGGCTG 60.824 63.158 28.80 11.05 0.00 4.85
400 401 2.595655 GTCTATTTGGGCCGGGCT 59.404 61.111 28.80 10.65 0.00 5.19
401 402 2.518587 GGTCTATTTGGGCCGGGC 60.519 66.667 22.00 22.00 0.00 6.13
402 403 2.194868 GGGTCTATTTGGGCCGGG 59.805 66.667 2.18 0.00 0.00 5.73
403 404 2.203153 CGGGTCTATTTGGGCCGG 60.203 66.667 0.00 0.00 0.00 6.13
404 405 2.203153 CCGGGTCTATTTGGGCCG 60.203 66.667 0.00 0.00 0.00 6.13
405 406 2.518587 GCCGGGTCTATTTGGGCC 60.519 66.667 2.18 0.00 37.82 5.80
406 407 2.518587 GGCCGGGTCTATTTGGGC 60.519 66.667 2.18 0.00 43.01 5.36
407 408 2.194868 GGGCCGGGTCTATTTGGG 59.805 66.667 2.18 0.00 0.00 4.12
408 409 2.203153 CGGGCCGGGTCTATTTGG 60.203 66.667 20.56 0.00 0.00 3.28
409 410 0.393267 TTTCGGGCCGGGTCTATTTG 60.393 55.000 27.98 0.00 0.00 2.32
410 411 0.328926 TTTTCGGGCCGGGTCTATTT 59.671 50.000 27.98 0.00 0.00 1.40
411 412 0.549469 ATTTTCGGGCCGGGTCTATT 59.451 50.000 27.98 1.78 0.00 1.73
412 413 1.071228 GTATTTTCGGGCCGGGTCTAT 59.929 52.381 27.98 14.49 0.00 1.98
413 414 0.465287 GTATTTTCGGGCCGGGTCTA 59.535 55.000 27.98 10.43 0.00 2.59
414 415 1.222661 GTATTTTCGGGCCGGGTCT 59.777 57.895 27.98 11.48 0.00 3.85
415 416 1.820906 GGTATTTTCGGGCCGGGTC 60.821 63.158 27.98 10.59 0.00 4.46
416 417 2.273123 GGTATTTTCGGGCCGGGT 59.727 61.111 27.98 12.02 0.00 5.28
417 418 2.517638 GGGTATTTTCGGGCCGGG 60.518 66.667 27.98 0.00 0.00 5.73
418 419 2.898343 CGGGTATTTTCGGGCCGG 60.898 66.667 27.98 7.65 0.00 6.13
419 420 2.175621 GTCGGGTATTTTCGGGCCG 61.176 63.158 22.51 22.51 0.00 6.13
420 421 1.820906 GGTCGGGTATTTTCGGGCC 60.821 63.158 0.00 0.00 0.00 5.80
421 422 1.820906 GGGTCGGGTATTTTCGGGC 60.821 63.158 0.00 0.00 0.00 6.13
422 423 1.522130 CGGGTCGGGTATTTTCGGG 60.522 63.158 0.00 0.00 0.00 5.14
423 424 0.807275 GTCGGGTCGGGTATTTTCGG 60.807 60.000 0.00 0.00 0.00 4.30
424 425 0.807275 GGTCGGGTCGGGTATTTTCG 60.807 60.000 0.00 0.00 0.00 3.46
425 426 0.462581 GGGTCGGGTCGGGTATTTTC 60.463 60.000 0.00 0.00 0.00 2.29
426 427 1.603842 GGGTCGGGTCGGGTATTTT 59.396 57.895 0.00 0.00 0.00 1.82
427 428 2.724273 CGGGTCGGGTCGGGTATTT 61.724 63.158 0.00 0.00 0.00 1.40
428 429 3.149648 CGGGTCGGGTCGGGTATT 61.150 66.667 0.00 0.00 0.00 1.89
429 430 4.127744 TCGGGTCGGGTCGGGTAT 62.128 66.667 0.00 0.00 0.00 2.73
452 453 4.016113 GCTTAAAATCTAAGCACGGGTG 57.984 45.455 10.80 0.00 46.61 4.61
490 491 2.991540 AAAAAGGCAGGCCCGAGC 60.992 61.111 6.70 0.35 39.21 5.03
508 509 1.065709 GGCCCCTTCACTTAATCGTGA 60.066 52.381 0.00 0.00 41.82 4.35
509 510 1.339631 TGGCCCCTTCACTTAATCGTG 60.340 52.381 0.00 0.00 36.25 4.35
510 511 0.988832 TGGCCCCTTCACTTAATCGT 59.011 50.000 0.00 0.00 0.00 3.73
511 512 1.209504 TCTGGCCCCTTCACTTAATCG 59.790 52.381 0.00 0.00 0.00 3.34
512 513 2.644676 GTCTGGCCCCTTCACTTAATC 58.355 52.381 0.00 0.00 0.00 1.75
513 514 1.285078 GGTCTGGCCCCTTCACTTAAT 59.715 52.381 0.00 0.00 0.00 1.40
514 515 0.696501 GGTCTGGCCCCTTCACTTAA 59.303 55.000 0.00 0.00 0.00 1.85
515 516 2.383608 GGTCTGGCCCCTTCACTTA 58.616 57.895 0.00 0.00 0.00 2.24
516 517 3.171348 GGTCTGGCCCCTTCACTT 58.829 61.111 0.00 0.00 0.00 3.16
547 548 0.670546 CAAGTGATATAGCCCGCCGG 60.671 60.000 0.00 0.00 0.00 6.13
548 549 0.670546 CCAAGTGATATAGCCCGCCG 60.671 60.000 0.00 0.00 0.00 6.46
549 550 0.396811 ACCAAGTGATATAGCCCGCC 59.603 55.000 0.00 0.00 0.00 6.13
550 551 3.611766 ATACCAAGTGATATAGCCCGC 57.388 47.619 0.00 0.00 0.00 6.13
551 552 4.142004 GGGTATACCAAGTGATATAGCCCG 60.142 50.000 23.33 0.00 42.40 6.13
552 553 4.142004 CGGGTATACCAAGTGATATAGCCC 60.142 50.000 23.33 7.45 44.08 5.19
553 554 4.142004 CCGGGTATACCAAGTGATATAGCC 60.142 50.000 23.33 9.95 43.75 3.93
554 555 4.679905 GCCGGGTATACCAAGTGATATAGC 60.680 50.000 23.33 9.41 40.22 2.97
555 556 4.439700 CGCCGGGTATACCAAGTGATATAG 60.440 50.000 23.33 3.90 40.22 1.31
556 557 3.444742 CGCCGGGTATACCAAGTGATATA 59.555 47.826 23.33 0.00 40.22 0.86
557 558 2.232941 CGCCGGGTATACCAAGTGATAT 59.767 50.000 23.33 0.00 40.22 1.63
558 559 1.614903 CGCCGGGTATACCAAGTGATA 59.385 52.381 23.33 0.00 40.22 2.15
559 560 0.391597 CGCCGGGTATACCAAGTGAT 59.608 55.000 23.33 0.00 40.22 3.06
560 561 1.817881 CGCCGGGTATACCAAGTGA 59.182 57.895 23.33 0.00 40.22 3.41
561 562 1.885850 GCGCCGGGTATACCAAGTG 60.886 63.158 23.33 19.16 40.22 3.16
562 563 2.502577 GCGCCGGGTATACCAAGT 59.497 61.111 23.33 0.00 40.22 3.16
563 564 2.280592 GGCGCCGGGTATACCAAG 60.281 66.667 23.33 15.60 40.22 3.61
564 565 4.224274 CGGCGCCGGGTATACCAA 62.224 66.667 40.50 0.00 40.22 3.67
582 583 1.190833 CCTCCCCCTCATCAGGATCG 61.191 65.000 0.00 0.00 43.65 3.69
599 600 3.386237 GGCGTGCTCCTGACTCCT 61.386 66.667 0.00 0.00 0.00 3.69
600 601 4.459089 GGGCGTGCTCCTGACTCC 62.459 72.222 0.00 0.00 0.00 3.85
617 618 1.214062 GTCTGAGGAGCAGGTCACG 59.786 63.158 1.20 0.00 44.98 4.35
619 620 0.113190 TCTGTCTGAGGAGCAGGTCA 59.887 55.000 1.20 0.00 44.98 4.02
622 623 1.477700 CTTCTCTGTCTGAGGAGCAGG 59.522 57.143 6.87 0.00 41.16 4.85
631 632 1.484038 CTCCTCCCCTTCTCTGTCTG 58.516 60.000 0.00 0.00 0.00 3.51
652 653 3.869473 TACGTCAAGCCGGTGGTGC 62.869 63.158 1.90 0.00 0.00 5.01
678 679 2.108566 CCATCTGAGGCTCCAGCG 59.891 66.667 12.86 4.57 43.26 5.18
698 699 2.029666 CGGTCCAGATCCGCATCC 59.970 66.667 0.00 0.00 41.48 3.51
729 730 5.186256 TCCTTCTCTCTCTTCTCTGCTTA 57.814 43.478 0.00 0.00 0.00 3.09
744 753 0.179006 GCCCATGACCCATCCTTCTC 60.179 60.000 0.00 0.00 0.00 2.87
748 757 2.366837 TCGCCCATGACCCATCCT 60.367 61.111 0.00 0.00 0.00 3.24
764 773 6.478512 ACCTGAATAAGAATCACTCCTCTC 57.521 41.667 0.00 0.00 0.00 3.20
765 774 6.882768 AACCTGAATAAGAATCACTCCTCT 57.117 37.500 0.00 0.00 0.00 3.69
766 775 6.317391 CCAAACCTGAATAAGAATCACTCCTC 59.683 42.308 0.00 0.00 0.00 3.71
767 776 6.012508 TCCAAACCTGAATAAGAATCACTCCT 60.013 38.462 0.00 0.00 0.00 3.69
768 777 6.180472 TCCAAACCTGAATAAGAATCACTCC 58.820 40.000 0.00 0.00 0.00 3.85
769 778 7.106239 TCTCCAAACCTGAATAAGAATCACTC 58.894 38.462 0.00 0.00 0.00 3.51
779 788 4.683400 GCGATCCTTCTCCAAACCTGAATA 60.683 45.833 0.00 0.00 0.00 1.75
920 937 2.486636 TTCGTGGATTGCTCGCTCGT 62.487 55.000 0.00 0.00 0.00 4.18
980 1019 4.492160 GGACGCGTCGATCAGCCA 62.492 66.667 30.99 0.00 0.00 4.75
1056 1095 1.068741 ACCGTCTTCTCTGGTGTCAAC 59.931 52.381 0.00 0.00 33.91 3.18
1058 1097 2.281539 TACCGTCTTCTCTGGTGTCA 57.718 50.000 0.00 0.00 37.20 3.58
1064 1103 3.056107 TGGGATGTTTACCGTCTTCTCTG 60.056 47.826 0.00 0.00 0.00 3.35
1095 1173 6.866248 CAGTTAGAACCTTCTTCTCTTCTGTC 59.134 42.308 0.00 0.00 38.70 3.51
1110 1188 4.879545 TCTTGTTTGTGGTCAGTTAGAACC 59.120 41.667 0.00 0.00 30.86 3.62
1115 1193 4.638421 CCTGTTCTTGTTTGTGGTCAGTTA 59.362 41.667 0.00 0.00 0.00 2.24
1306 1384 3.054802 AGAACAGATACCTCAAGGGCTTG 60.055 47.826 0.29 0.00 41.71 4.01
1327 1405 5.053286 CGCTCAAAGTAACGTTCACAAAAAG 60.053 40.000 2.82 0.00 0.00 2.27
1333 1411 2.536803 TGACGCTCAAAGTAACGTTCAC 59.463 45.455 2.82 1.76 39.16 3.18
1338 1416 3.930618 TGTTTTGACGCTCAAAGTAACG 58.069 40.909 11.25 0.00 45.77 3.18
1340 1418 9.176181 GATTAAATGTTTTGACGCTCAAAGTAA 57.824 29.630 11.25 8.09 45.77 2.24
1342 1420 7.379529 CAGATTAAATGTTTTGACGCTCAAAGT 59.620 33.333 11.25 3.09 45.77 2.66
1343 1421 7.148918 CCAGATTAAATGTTTTGACGCTCAAAG 60.149 37.037 11.25 0.26 45.77 2.77
1344 1422 6.640499 CCAGATTAAATGTTTTGACGCTCAAA 59.360 34.615 8.47 8.47 43.84 2.69
1447 1544 5.588246 TGAGTACAAACACAAATGCAGAGAA 59.412 36.000 0.00 0.00 0.00 2.87
1542 1641 2.370281 ACATACAGAGCGTCCAACTG 57.630 50.000 0.00 0.00 37.62 3.16
1571 1673 2.087501 TGACGCGCTGAAGGAAAATA 57.912 45.000 5.73 0.00 0.00 1.40
1610 1712 3.306225 GCTTGCATTGTTCAGGATGGAAA 60.306 43.478 0.00 0.00 34.02 3.13
1683 1785 3.620488 GCCATGGAGGAGTCAATTGTTA 58.380 45.455 18.40 0.00 41.22 2.41
1758 1866 7.173218 CAGGAGTAGTTTAAACAGAATGCAGAA 59.827 37.037 20.06 0.00 42.53 3.02
1783 1893 4.788925 ATAAAATCCATCCCGAACCTCA 57.211 40.909 0.00 0.00 0.00 3.86
1866 2082 5.023533 TGCTGAGTTAATCATGACTACCC 57.976 43.478 0.00 0.00 37.28 3.69
1899 2115 8.528643 TGCTAGTACTAGAGCACATAAAGAAAA 58.471 33.333 30.09 0.00 43.64 2.29
1915 2131 8.515695 TGTAGAACATTAAGCTGCTAGTACTA 57.484 34.615 0.90 1.89 0.00 1.82
1944 2160 3.205338 GGCTGCACAAAAAGGAAATGTT 58.795 40.909 0.50 0.00 0.00 2.71
2333 2552 6.281405 ACATAACTGAACGTCCAGGAATATC 58.719 40.000 6.77 0.00 38.44 1.63
2400 2619 4.644685 ACCACATATTTCAGTATTGCACCC 59.355 41.667 0.00 0.00 0.00 4.61
2402 2621 5.125417 ACCACCACATATTTCAGTATTGCAC 59.875 40.000 0.00 0.00 0.00 4.57
2403 2622 5.125257 CACCACCACATATTTCAGTATTGCA 59.875 40.000 0.00 0.00 0.00 4.08
2404 2623 5.450412 CCACCACCACATATTTCAGTATTGC 60.450 44.000 0.00 0.00 0.00 3.56
2405 2624 5.652014 ACCACCACCACATATTTCAGTATTG 59.348 40.000 0.00 0.00 0.00 1.90
2406 2625 5.826643 ACCACCACCACATATTTCAGTATT 58.173 37.500 0.00 0.00 0.00 1.89
2407 2626 5.450818 ACCACCACCACATATTTCAGTAT 57.549 39.130 0.00 0.00 0.00 2.12
2408 2627 4.919774 ACCACCACCACATATTTCAGTA 57.080 40.909 0.00 0.00 0.00 2.74
2409 2628 3.806949 ACCACCACCACATATTTCAGT 57.193 42.857 0.00 0.00 0.00 3.41
2639 2859 6.839124 ATGTCAAGGCAAGTGAATATCAAA 57.161 33.333 0.00 0.00 0.00 2.69
2804 3024 7.868922 TGATGAAGCCAAATGAACATTATATGC 59.131 33.333 0.37 2.52 0.00 3.14
2896 3116 5.537188 ACTGCAAAGTGAAACAAACAGAAA 58.463 33.333 0.00 0.00 41.43 2.52
2910 3130 5.348986 CACGTAGGTATCATACTGCAAAGT 58.651 41.667 0.00 0.00 0.00 2.66
3084 3308 7.801716 AACTACAAAACTAGCAAGATCAACA 57.198 32.000 0.00 0.00 0.00 3.33
3124 4771 4.202192 TGGAGACGGATCAGATTCAGATTG 60.202 45.833 0.00 0.00 0.00 2.67
3185 4832 9.778993 AGTTCTTCCGTTTCTTAAACTAAAAAC 57.221 29.630 1.49 0.00 39.23 2.43
3388 5057 1.606668 TGCTTCACCATGGTTTTCGTC 59.393 47.619 16.84 3.19 0.00 4.20
3389 5058 1.686355 TGCTTCACCATGGTTTTCGT 58.314 45.000 16.84 0.00 0.00 3.85
3390 5059 2.791383 TTGCTTCACCATGGTTTTCG 57.209 45.000 16.84 3.77 0.00 3.46
3414 5083 1.614241 TTCCCTCGGCTACTCTTGCC 61.614 60.000 0.00 0.00 46.42 4.52
3436 5106 0.935898 CACTCTTCGCTCATGGCATC 59.064 55.000 0.00 0.00 41.91 3.91
3453 5123 1.147600 ACCGGAGACCAACAACCAC 59.852 57.895 9.46 0.00 0.00 4.16
3466 5144 2.668632 GGTGGAATCAGCACCGGA 59.331 61.111 9.46 0.00 40.79 5.14
3502 5181 1.544093 CCCTCAGCTCACTCTTTGCAA 60.544 52.381 0.00 0.00 0.00 4.08
3508 5187 2.285824 GCTTCCCTCAGCTCACTCT 58.714 57.895 0.00 0.00 36.79 3.24
3509 5188 4.930592 GCTTCCCTCAGCTCACTC 57.069 61.111 0.00 0.00 36.79 3.51
3540 5219 0.246635 ACCGGAGACCAATCGTTCTG 59.753 55.000 9.46 0.00 0.00 3.02
3545 5224 0.320421 ACAACACCGGAGACCAATCG 60.320 55.000 9.46 0.00 0.00 3.34
3547 5226 2.158667 AGAAACAACACCGGAGACCAAT 60.159 45.455 9.46 0.00 0.00 3.16
3553 5232 1.346722 AGGGTAGAAACAACACCGGAG 59.653 52.381 9.46 1.26 32.84 4.63
3561 5240 1.742308 AGGGCAGAGGGTAGAAACAA 58.258 50.000 0.00 0.00 0.00 2.83
3575 5254 1.000521 CAGCTCATGGGAAAGGGCA 60.001 57.895 0.00 0.00 0.00 5.36
3578 5257 1.035932 CCAGCAGCTCATGGGAAAGG 61.036 60.000 0.00 0.00 32.63 3.11
3581 5260 2.044650 GCCAGCAGCTCATGGGAA 60.045 61.111 14.20 0.00 38.99 3.97
3610 5290 3.165875 CACATAGGATAGGGACGATGGT 58.834 50.000 0.00 0.00 0.00 3.55
3611 5291 2.093973 GCACATAGGATAGGGACGATGG 60.094 54.545 0.00 0.00 0.00 3.51
3615 5295 2.239400 TGAGCACATAGGATAGGGACG 58.761 52.381 0.00 0.00 0.00 4.79
3637 5320 3.433598 GCTATAAAGTGTGCCCTGGATGA 60.434 47.826 0.00 0.00 0.00 2.92
3638 5321 2.880890 GCTATAAAGTGTGCCCTGGATG 59.119 50.000 0.00 0.00 0.00 3.51
3695 5397 5.437289 TTTGCAATTCACTCCTGTTACTG 57.563 39.130 0.00 0.00 0.00 2.74
3724 5426 3.557577 CAAACGATGCCTCAAATGTGA 57.442 42.857 0.00 0.00 0.00 3.58
3774 5488 4.210724 ACCGAATCCGTGGAGATTTTTA 57.789 40.909 0.00 0.00 36.60 1.52
3782 5496 3.337694 AATGTTTACCGAATCCGTGGA 57.662 42.857 0.00 0.00 0.00 4.02
3785 5499 3.253677 TGCAAAATGTTTACCGAATCCGT 59.746 39.130 0.00 0.00 0.00 4.69
3863 5577 3.935828 GTCAAGTCAGCTCCTTACAATCC 59.064 47.826 0.00 0.00 0.00 3.01
3902 5618 8.755028 TGCTTTTTCTTTTTAGAACTAAGGGTT 58.245 29.630 0.00 0.00 41.40 4.11
3911 5629 6.596106 GGGTTGGTTGCTTTTTCTTTTTAGAA 59.404 34.615 0.00 0.00 0.00 2.10
3930 5648 2.933834 AACGGAGGGAGGGGTTGG 60.934 66.667 0.00 0.00 0.00 3.77
4081 5804 1.691219 GGGAAGAAGGGGATGTGCA 59.309 57.895 0.00 0.00 0.00 4.57
4093 5816 2.683933 GCAGGAGACGGGGGAAGA 60.684 66.667 0.00 0.00 0.00 2.87
4098 5821 2.043450 AGAGAGCAGGAGACGGGG 60.043 66.667 0.00 0.00 0.00 5.73
4148 5871 2.358003 GGCTCACTGCAGAAGCGT 60.358 61.111 27.43 4.95 46.23 5.07
4233 5956 3.155167 GCGGGGTTCCTCGAGGAT 61.155 66.667 33.97 0.00 44.98 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.