Multiple sequence alignment - TraesCS3D01G415600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G415600 chr3D 100.000 3749 0 0 1 3749 527154058 527150310 0.000000e+00 6924
1 TraesCS3D01G415600 chr3A 96.393 2883 85 5 885 3749 661797435 661794554 0.000000e+00 4730
2 TraesCS3D01G415600 chr3A 84.156 385 59 2 501 884 661797904 661797521 4.570000e-99 372
3 TraesCS3D01G415600 chr3B 96.585 2840 87 5 912 3749 696984065 696981234 0.000000e+00 4698
4 TraesCS3D01G415600 chr6B 95.154 1692 77 4 1934 3623 659511270 659509582 0.000000e+00 2665
5 TraesCS3D01G415600 chr6B 89.106 973 70 8 979 1938 659533004 659532055 0.000000e+00 1177
6 TraesCS3D01G415600 chr6B 88.072 721 53 15 979 1686 659508161 659508861 0.000000e+00 824
7 TraesCS3D01G415600 chr6B 96.622 148 3 2 3603 3749 659509281 659509135 1.040000e-60 244


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G415600 chr3D 527150310 527154058 3748 True 6924.0 6924 100.0000 1 3749 1 chr3D.!!$R1 3748
1 TraesCS3D01G415600 chr3A 661794554 661797904 3350 True 2551.0 4730 90.2745 501 3749 2 chr3A.!!$R1 3248
2 TraesCS3D01G415600 chr3B 696981234 696984065 2831 True 4698.0 4698 96.5850 912 3749 1 chr3B.!!$R1 2837
3 TraesCS3D01G415600 chr6B 659509135 659511270 2135 True 1454.5 2665 95.8880 1934 3749 2 chr6B.!!$R2 1815
4 TraesCS3D01G415600 chr6B 659532055 659533004 949 True 1177.0 1177 89.1060 979 1938 1 chr6B.!!$R1 959
5 TraesCS3D01G415600 chr6B 659508161 659508861 700 False 824.0 824 88.0720 979 1686 1 chr6B.!!$F1 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.028374 GACAACCCAACCACGTTTCG 59.972 55.0 0.00 0.0 0.00 3.46 F
240 241 0.031616 ACACCCCTCTCCATCCTCTC 60.032 60.0 0.00 0.0 0.00 3.20 F
376 377 0.032813 AGGCCCAATCCCATTGACTG 60.033 55.0 0.00 0.0 42.83 3.51 F
421 422 0.109532 TCCACGCCATCCAACAAGAA 59.890 50.0 0.00 0.0 0.00 2.52 F
423 424 0.109597 CACGCCATCCAACAAGAAGC 60.110 55.0 0.00 0.0 0.00 3.86 F
642 644 0.110010 GCTTCTGAAGTTCAAGGCGC 60.110 55.0 17.97 0.0 0.00 6.53 F
813 815 0.179156 GTGAAGGCATTGCGACATGG 60.179 55.0 1.91 0.0 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1404 1508 0.325671 GATCCAGACCCCTCCTCACA 60.326 60.000 0.00 0.0 0.00 3.58 R
1737 1842 0.471971 TCCTCCCCTGCCTAGCATAC 60.472 60.000 0.00 0.0 38.13 2.39 R
2176 2281 1.089920 CCTTCAGACTCCATTTGGCG 58.910 55.000 0.00 0.0 34.44 5.69 R
2383 2490 2.158564 CCATGGGCATTGTCTCTATGGT 60.159 50.000 2.85 0.0 31.33 3.55 R
2547 2654 1.019673 CCCACATTCCTTCATCAGCG 58.980 55.000 0.00 0.0 0.00 5.18 R
2613 2720 3.138283 TCACACTCCTTCCAATGTCCTTT 59.862 43.478 0.00 0.0 0.00 3.11 R
2833 2941 1.210538 TCAAGAGCTCCATCCAGCAT 58.789 50.000 10.93 0.0 42.40 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.292159 GGCGGACAACCCAACCAC 61.292 66.667 0.00 0.00 32.42 4.16
23 24 3.656045 GCGGACAACCCAACCACG 61.656 66.667 0.00 0.00 34.14 4.94
24 25 2.203098 CGGACAACCCAACCACGT 60.203 61.111 0.00 0.00 34.14 4.49
25 26 1.820481 CGGACAACCCAACCACGTT 60.820 57.895 0.00 0.00 34.14 3.99
26 27 1.378124 CGGACAACCCAACCACGTTT 61.378 55.000 0.00 0.00 34.14 3.60
27 28 0.382873 GGACAACCCAACCACGTTTC 59.617 55.000 0.00 0.00 34.14 2.78
28 29 0.028374 GACAACCCAACCACGTTTCG 59.972 55.000 0.00 0.00 0.00 3.46
29 30 0.677414 ACAACCCAACCACGTTTCGT 60.677 50.000 0.00 0.00 42.36 3.85
30 31 1.297664 CAACCCAACCACGTTTCGTA 58.702 50.000 0.00 0.00 38.32 3.43
31 32 1.003652 CAACCCAACCACGTTTCGTAC 60.004 52.381 0.00 0.00 38.32 3.67
32 33 0.532640 ACCCAACCACGTTTCGTACC 60.533 55.000 0.00 0.00 38.32 3.34
33 34 0.532417 CCCAACCACGTTTCGTACCA 60.532 55.000 0.00 0.00 38.32 3.25
34 35 1.297664 CCAACCACGTTTCGTACCAA 58.702 50.000 0.00 0.00 38.32 3.67
35 36 1.669779 CCAACCACGTTTCGTACCAAA 59.330 47.619 0.00 0.00 38.32 3.28
36 37 2.097142 CCAACCACGTTTCGTACCAAAA 59.903 45.455 0.00 0.00 38.32 2.44
37 38 3.427233 CCAACCACGTTTCGTACCAAAAA 60.427 43.478 0.00 0.00 38.32 1.94
38 39 4.352887 CAACCACGTTTCGTACCAAAAAT 58.647 39.130 0.00 0.00 38.32 1.82
39 40 3.954999 ACCACGTTTCGTACCAAAAATG 58.045 40.909 0.00 0.00 38.32 2.32
40 41 2.722116 CCACGTTTCGTACCAAAAATGC 59.278 45.455 0.00 0.00 38.32 3.56
41 42 2.722116 CACGTTTCGTACCAAAAATGCC 59.278 45.455 0.00 0.00 38.32 4.40
42 43 2.358267 ACGTTTCGTACCAAAAATGCCA 59.642 40.909 0.00 0.00 38.73 4.92
43 44 2.722116 CGTTTCGTACCAAAAATGCCAC 59.278 45.455 0.00 0.00 0.00 5.01
44 45 3.707793 GTTTCGTACCAAAAATGCCACA 58.292 40.909 0.00 0.00 0.00 4.17
45 46 4.303282 GTTTCGTACCAAAAATGCCACAT 58.697 39.130 0.00 0.00 0.00 3.21
46 47 5.462405 GTTTCGTACCAAAAATGCCACATA 58.538 37.500 0.00 0.00 0.00 2.29
47 48 5.707242 TTCGTACCAAAAATGCCACATAA 57.293 34.783 0.00 0.00 0.00 1.90
48 49 5.049398 TCGTACCAAAAATGCCACATAAC 57.951 39.130 0.00 0.00 0.00 1.89
49 50 4.082679 TCGTACCAAAAATGCCACATAACC 60.083 41.667 0.00 0.00 0.00 2.85
50 51 4.321304 CGTACCAAAAATGCCACATAACCA 60.321 41.667 0.00 0.00 0.00 3.67
51 52 4.696479 ACCAAAAATGCCACATAACCAA 57.304 36.364 0.00 0.00 0.00 3.67
52 53 5.041191 ACCAAAAATGCCACATAACCAAA 57.959 34.783 0.00 0.00 0.00 3.28
53 54 4.819088 ACCAAAAATGCCACATAACCAAAC 59.181 37.500 0.00 0.00 0.00 2.93
54 55 4.215185 CCAAAAATGCCACATAACCAAACC 59.785 41.667 0.00 0.00 0.00 3.27
55 56 3.694043 AAATGCCACATAACCAAACCC 57.306 42.857 0.00 0.00 0.00 4.11
56 57 2.621556 ATGCCACATAACCAAACCCT 57.378 45.000 0.00 0.00 0.00 4.34
57 58 2.390225 TGCCACATAACCAAACCCTT 57.610 45.000 0.00 0.00 0.00 3.95
58 59 2.683768 TGCCACATAACCAAACCCTTT 58.316 42.857 0.00 0.00 0.00 3.11
59 60 3.845860 TGCCACATAACCAAACCCTTTA 58.154 40.909 0.00 0.00 0.00 1.85
60 61 4.421131 TGCCACATAACCAAACCCTTTAT 58.579 39.130 0.00 0.00 0.00 1.40
61 62 4.841246 TGCCACATAACCAAACCCTTTATT 59.159 37.500 0.00 0.00 0.00 1.40
62 63 5.308237 TGCCACATAACCAAACCCTTTATTT 59.692 36.000 0.00 0.00 0.00 1.40
63 64 5.872617 GCCACATAACCAAACCCTTTATTTC 59.127 40.000 0.00 0.00 0.00 2.17
64 65 6.096695 CCACATAACCAAACCCTTTATTTCG 58.903 40.000 0.00 0.00 0.00 3.46
65 66 6.071840 CCACATAACCAAACCCTTTATTTCGA 60.072 38.462 0.00 0.00 0.00 3.71
66 67 7.027161 CACATAACCAAACCCTTTATTTCGAG 58.973 38.462 0.00 0.00 0.00 4.04
67 68 4.514781 AACCAAACCCTTTATTTCGAGC 57.485 40.909 0.00 0.00 0.00 5.03
68 69 3.763057 ACCAAACCCTTTATTTCGAGCT 58.237 40.909 0.00 0.00 0.00 4.09
69 70 3.756963 ACCAAACCCTTTATTTCGAGCTC 59.243 43.478 2.73 2.73 0.00 4.09
70 71 3.756434 CCAAACCCTTTATTTCGAGCTCA 59.244 43.478 15.40 0.00 0.00 4.26
71 72 4.217550 CCAAACCCTTTATTTCGAGCTCAA 59.782 41.667 15.40 1.16 0.00 3.02
72 73 5.278758 CCAAACCCTTTATTTCGAGCTCAAA 60.279 40.000 15.40 13.28 0.00 2.69
73 74 6.389906 CAAACCCTTTATTTCGAGCTCAAAT 58.610 36.000 15.40 18.66 0.00 2.32
74 75 5.567138 ACCCTTTATTTCGAGCTCAAATG 57.433 39.130 23.19 14.13 0.00 2.32
75 76 5.010282 ACCCTTTATTTCGAGCTCAAATGT 58.990 37.500 23.19 14.56 0.00 2.71
76 77 5.476945 ACCCTTTATTTCGAGCTCAAATGTT 59.523 36.000 23.19 9.70 0.00 2.71
77 78 6.030228 CCCTTTATTTCGAGCTCAAATGTTC 58.970 40.000 23.19 0.00 0.00 3.18
78 79 6.349280 CCCTTTATTTCGAGCTCAAATGTTCA 60.349 38.462 23.19 9.45 0.00 3.18
79 80 6.744537 CCTTTATTTCGAGCTCAAATGTTCAG 59.255 38.462 23.19 16.06 0.00 3.02
80 81 4.691860 ATTTCGAGCTCAAATGTTCAGG 57.308 40.909 15.40 0.00 0.00 3.86
81 82 2.839486 TCGAGCTCAAATGTTCAGGT 57.161 45.000 15.40 0.00 0.00 4.00
82 83 3.126001 TCGAGCTCAAATGTTCAGGTT 57.874 42.857 15.40 0.00 0.00 3.50
83 84 2.807967 TCGAGCTCAAATGTTCAGGTTG 59.192 45.455 15.40 0.00 0.00 3.77
84 85 2.549754 CGAGCTCAAATGTTCAGGTTGT 59.450 45.455 15.40 0.00 0.00 3.32
85 86 3.364366 CGAGCTCAAATGTTCAGGTTGTC 60.364 47.826 15.40 0.00 0.00 3.18
86 87 2.887152 AGCTCAAATGTTCAGGTTGTCC 59.113 45.455 0.00 0.00 0.00 4.02
87 88 2.622942 GCTCAAATGTTCAGGTTGTCCA 59.377 45.455 0.00 0.00 35.89 4.02
88 89 3.068024 GCTCAAATGTTCAGGTTGTCCAA 59.932 43.478 0.00 0.00 35.89 3.53
89 90 4.610945 CTCAAATGTTCAGGTTGTCCAAC 58.389 43.478 1.49 1.49 40.45 3.77
90 91 4.019858 TCAAATGTTCAGGTTGTCCAACA 58.980 39.130 11.89 0.00 42.85 3.33
91 92 4.648762 TCAAATGTTCAGGTTGTCCAACAT 59.351 37.500 11.89 1.96 42.85 2.71
92 93 4.853924 AATGTTCAGGTTGTCCAACATC 57.146 40.909 11.89 0.00 42.85 3.06
93 94 2.582052 TGTTCAGGTTGTCCAACATCC 58.418 47.619 11.89 2.84 42.85 3.51
94 95 2.174639 TGTTCAGGTTGTCCAACATCCT 59.825 45.455 11.89 4.26 46.32 3.24
95 96 2.814336 GTTCAGGTTGTCCAACATCCTC 59.186 50.000 11.89 0.00 42.96 3.71
96 97 2.338809 TCAGGTTGTCCAACATCCTCT 58.661 47.619 11.89 0.00 42.96 3.69
97 98 3.516586 TCAGGTTGTCCAACATCCTCTA 58.483 45.455 11.89 0.00 42.96 2.43
98 99 3.907474 TCAGGTTGTCCAACATCCTCTAA 59.093 43.478 11.89 0.00 42.96 2.10
99 100 4.349636 TCAGGTTGTCCAACATCCTCTAAA 59.650 41.667 11.89 0.00 42.96 1.85
100 101 4.455877 CAGGTTGTCCAACATCCTCTAAAC 59.544 45.833 11.89 0.00 42.96 2.01
101 102 3.756963 GGTTGTCCAACATCCTCTAAACC 59.243 47.826 11.89 0.00 42.85 3.27
102 103 3.713826 TGTCCAACATCCTCTAAACCC 57.286 47.619 0.00 0.00 0.00 4.11
103 104 2.983192 TGTCCAACATCCTCTAAACCCA 59.017 45.455 0.00 0.00 0.00 4.51
104 105 3.009033 TGTCCAACATCCTCTAAACCCAG 59.991 47.826 0.00 0.00 0.00 4.45
105 106 2.026262 TCCAACATCCTCTAAACCCAGC 60.026 50.000 0.00 0.00 0.00 4.85
106 107 2.369394 CAACATCCTCTAAACCCAGCC 58.631 52.381 0.00 0.00 0.00 4.85
107 108 1.668826 ACATCCTCTAAACCCAGCCA 58.331 50.000 0.00 0.00 0.00 4.75
108 109 1.992557 ACATCCTCTAAACCCAGCCAA 59.007 47.619 0.00 0.00 0.00 4.52
109 110 2.582636 ACATCCTCTAAACCCAGCCAAT 59.417 45.455 0.00 0.00 0.00 3.16
110 111 3.785887 ACATCCTCTAAACCCAGCCAATA 59.214 43.478 0.00 0.00 0.00 1.90
111 112 4.416848 ACATCCTCTAAACCCAGCCAATAT 59.583 41.667 0.00 0.00 0.00 1.28
112 113 4.437682 TCCTCTAAACCCAGCCAATATG 57.562 45.455 0.00 0.00 0.00 1.78
113 114 2.887152 CCTCTAAACCCAGCCAATATGC 59.113 50.000 0.00 0.00 0.00 3.14
114 115 2.549754 CTCTAAACCCAGCCAATATGCG 59.450 50.000 0.00 0.00 36.02 4.73
115 116 1.608590 CTAAACCCAGCCAATATGCGG 59.391 52.381 0.00 0.00 36.02 5.69
116 117 1.042559 AAACCCAGCCAATATGCGGG 61.043 55.000 11.06 11.06 44.96 6.13
119 120 4.069869 CAGCCAATATGCGGGAGG 57.930 61.111 0.00 0.00 36.02 4.30
120 121 1.451504 CAGCCAATATGCGGGAGGA 59.548 57.895 0.00 0.00 36.02 3.71
121 122 0.037303 CAGCCAATATGCGGGAGGAT 59.963 55.000 0.00 0.00 45.39 3.24
122 123 0.773644 AGCCAATATGCGGGAGGATT 59.226 50.000 0.00 0.00 42.52 3.01
123 124 1.145738 AGCCAATATGCGGGAGGATTT 59.854 47.619 0.00 0.00 42.52 2.17
124 125 1.270550 GCCAATATGCGGGAGGATTTG 59.729 52.381 0.00 0.00 42.52 2.32
125 126 2.862541 CCAATATGCGGGAGGATTTGA 58.137 47.619 0.00 0.00 42.52 2.69
126 127 2.816087 CCAATATGCGGGAGGATTTGAG 59.184 50.000 0.00 0.00 42.52 3.02
127 128 2.816087 CAATATGCGGGAGGATTTGAGG 59.184 50.000 0.00 0.00 42.52 3.86
128 129 0.108585 TATGCGGGAGGATTTGAGGC 59.891 55.000 0.00 0.00 42.52 4.70
129 130 2.897350 GCGGGAGGATTTGAGGCG 60.897 66.667 0.00 0.00 0.00 5.52
130 131 2.900273 CGGGAGGATTTGAGGCGA 59.100 61.111 0.00 0.00 0.00 5.54
131 132 1.447643 CGGGAGGATTTGAGGCGAT 59.552 57.895 0.00 0.00 0.00 4.58
132 133 0.179045 CGGGAGGATTTGAGGCGATT 60.179 55.000 0.00 0.00 0.00 3.34
133 134 1.598882 GGGAGGATTTGAGGCGATTC 58.401 55.000 0.00 0.00 0.00 2.52
134 135 1.134098 GGGAGGATTTGAGGCGATTCA 60.134 52.381 0.00 0.00 0.00 2.57
135 136 2.643551 GGAGGATTTGAGGCGATTCAA 58.356 47.619 0.00 0.00 35.38 2.69
137 138 3.181496 GGAGGATTTGAGGCGATTCAAAC 60.181 47.826 14.41 9.81 46.44 2.93
138 139 3.420893 AGGATTTGAGGCGATTCAAACA 58.579 40.909 14.41 0.00 46.44 2.83
139 140 3.191371 AGGATTTGAGGCGATTCAAACAC 59.809 43.478 14.41 11.10 46.44 3.32
140 141 2.679355 TTTGAGGCGATTCAAACACG 57.321 45.000 9.76 0.00 40.95 4.49
141 142 0.871722 TTGAGGCGATTCAAACACGG 59.128 50.000 0.22 0.00 34.32 4.94
142 143 5.751247 ATTTGAGGCGATTCAAACACGGC 62.751 47.826 14.41 0.00 46.44 5.68
143 144 2.178273 GGCGATTCAAACACGGCC 59.822 61.111 0.00 0.00 44.46 6.13
144 145 2.202298 GCGATTCAAACACGGCCG 60.202 61.111 26.86 26.86 0.00 6.13
145 146 2.961669 GCGATTCAAACACGGCCGT 61.962 57.895 28.70 28.70 0.00 5.68
146 147 1.131826 CGATTCAAACACGGCCGTC 59.868 57.895 31.80 13.97 0.00 4.79
147 148 1.561717 CGATTCAAACACGGCCGTCA 61.562 55.000 31.80 8.61 0.00 4.35
148 149 0.110373 GATTCAAACACGGCCGTCAC 60.110 55.000 31.80 9.62 0.00 3.67
149 150 1.837538 ATTCAAACACGGCCGTCACG 61.838 55.000 31.80 20.84 37.36 4.35
150 151 3.266376 CAAACACGGCCGTCACGT 61.266 61.111 31.80 21.62 46.82 4.49
151 152 2.963320 AAACACGGCCGTCACGTC 60.963 61.111 31.80 0.00 43.58 4.34
161 162 4.736896 GTCACGTCGGACTGGCCC 62.737 72.222 0.00 0.00 34.92 5.80
163 164 4.308458 CACGTCGGACTGGCCCAA 62.308 66.667 0.00 0.00 0.00 4.12
164 165 3.319198 ACGTCGGACTGGCCCAAT 61.319 61.111 0.00 0.00 0.00 3.16
165 166 2.511600 CGTCGGACTGGCCCAATC 60.512 66.667 0.00 0.00 0.00 2.67
166 167 2.124695 GTCGGACTGGCCCAATCC 60.125 66.667 0.00 0.00 0.00 3.01
167 168 3.407967 TCGGACTGGCCCAATCCC 61.408 66.667 5.48 0.00 0.00 3.85
168 169 3.727258 CGGACTGGCCCAATCCCA 61.727 66.667 5.48 0.00 0.00 4.37
169 170 2.043953 GGACTGGCCCAATCCCAC 60.044 66.667 0.00 0.00 0.00 4.61
170 171 2.763215 GACTGGCCCAATCCCACA 59.237 61.111 0.00 0.00 0.00 4.17
171 172 1.076549 GACTGGCCCAATCCCACAA 59.923 57.895 0.00 0.00 0.00 3.33
172 173 0.541764 GACTGGCCCAATCCCACAAA 60.542 55.000 0.00 0.00 0.00 2.83
173 174 0.105246 ACTGGCCCAATCCCACAAAA 60.105 50.000 0.00 0.00 0.00 2.44
174 175 1.055040 CTGGCCCAATCCCACAAAAA 58.945 50.000 0.00 0.00 0.00 1.94
191 192 3.441500 AAAAACCCATCTCCTCCAGAC 57.558 47.619 0.00 0.00 32.26 3.51
192 193 0.905357 AAACCCATCTCCTCCAGACG 59.095 55.000 0.00 0.00 32.26 4.18
193 194 0.252284 AACCCATCTCCTCCAGACGT 60.252 55.000 0.00 0.00 32.26 4.34
194 195 0.684805 ACCCATCTCCTCCAGACGTC 60.685 60.000 7.70 7.70 32.26 4.34
195 196 1.729470 CCCATCTCCTCCAGACGTCG 61.729 65.000 10.46 5.16 32.26 5.12
196 197 0.748367 CCATCTCCTCCAGACGTCGA 60.748 60.000 10.46 1.09 32.26 4.20
197 198 1.095600 CATCTCCTCCAGACGTCGAA 58.904 55.000 10.46 0.00 32.26 3.71
198 199 1.096416 ATCTCCTCCAGACGTCGAAC 58.904 55.000 10.46 0.00 32.26 3.95
199 200 0.959372 TCTCCTCCAGACGTCGAACC 60.959 60.000 10.46 0.00 0.00 3.62
200 201 1.228337 TCCTCCAGACGTCGAACCA 60.228 57.895 10.46 0.00 0.00 3.67
201 202 0.824595 TCCTCCAGACGTCGAACCAA 60.825 55.000 10.46 0.00 0.00 3.67
202 203 0.032952 CCTCCAGACGTCGAACCAAA 59.967 55.000 10.46 0.00 0.00 3.28
203 204 1.137513 CTCCAGACGTCGAACCAAAC 58.862 55.000 10.46 0.00 0.00 2.93
204 205 0.249573 TCCAGACGTCGAACCAAACC 60.250 55.000 10.46 0.00 0.00 3.27
205 206 1.226030 CCAGACGTCGAACCAAACCC 61.226 60.000 10.46 0.00 0.00 4.11
206 207 0.249741 CAGACGTCGAACCAAACCCT 60.250 55.000 10.46 0.00 0.00 4.34
207 208 1.000060 CAGACGTCGAACCAAACCCTA 60.000 52.381 10.46 0.00 0.00 3.53
208 209 1.000171 AGACGTCGAACCAAACCCTAC 60.000 52.381 10.46 0.00 0.00 3.18
209 210 0.752054 ACGTCGAACCAAACCCTACA 59.248 50.000 0.00 0.00 0.00 2.74
210 211 1.345415 ACGTCGAACCAAACCCTACAT 59.655 47.619 0.00 0.00 0.00 2.29
211 212 1.997606 CGTCGAACCAAACCCTACATC 59.002 52.381 0.00 0.00 0.00 3.06
212 213 2.610976 CGTCGAACCAAACCCTACATCA 60.611 50.000 0.00 0.00 0.00 3.07
213 214 2.740447 GTCGAACCAAACCCTACATCAC 59.260 50.000 0.00 0.00 0.00 3.06
214 215 2.081462 CGAACCAAACCCTACATCACC 58.919 52.381 0.00 0.00 0.00 4.02
215 216 2.290071 CGAACCAAACCCTACATCACCT 60.290 50.000 0.00 0.00 0.00 4.00
216 217 3.763057 GAACCAAACCCTACATCACCTT 58.237 45.455 0.00 0.00 0.00 3.50
217 218 3.154827 ACCAAACCCTACATCACCTTG 57.845 47.619 0.00 0.00 0.00 3.61
218 219 2.714250 ACCAAACCCTACATCACCTTGA 59.286 45.455 0.00 0.00 0.00 3.02
219 220 3.081804 CCAAACCCTACATCACCTTGAC 58.918 50.000 0.00 0.00 0.00 3.18
220 221 3.081804 CAAACCCTACATCACCTTGACC 58.918 50.000 0.00 0.00 0.00 4.02
221 222 2.038863 ACCCTACATCACCTTGACCA 57.961 50.000 0.00 0.00 0.00 4.02
222 223 1.628846 ACCCTACATCACCTTGACCAC 59.371 52.381 0.00 0.00 0.00 4.16
223 224 1.628340 CCCTACATCACCTTGACCACA 59.372 52.381 0.00 0.00 0.00 4.17
224 225 2.615493 CCCTACATCACCTTGACCACAC 60.615 54.545 0.00 0.00 0.00 3.82
225 226 2.615493 CCTACATCACCTTGACCACACC 60.615 54.545 0.00 0.00 0.00 4.16
226 227 0.110486 ACATCACCTTGACCACACCC 59.890 55.000 0.00 0.00 0.00 4.61
227 228 0.609131 CATCACCTTGACCACACCCC 60.609 60.000 0.00 0.00 0.00 4.95
228 229 0.772124 ATCACCTTGACCACACCCCT 60.772 55.000 0.00 0.00 0.00 4.79
229 230 1.073199 CACCTTGACCACACCCCTC 59.927 63.158 0.00 0.00 0.00 4.30
230 231 1.073706 ACCTTGACCACACCCCTCT 60.074 57.895 0.00 0.00 0.00 3.69
231 232 1.128188 ACCTTGACCACACCCCTCTC 61.128 60.000 0.00 0.00 0.00 3.20
232 233 1.679898 CTTGACCACACCCCTCTCC 59.320 63.158 0.00 0.00 0.00 3.71
233 234 1.074090 TTGACCACACCCCTCTCCA 60.074 57.895 0.00 0.00 0.00 3.86
234 235 0.475632 TTGACCACACCCCTCTCCAT 60.476 55.000 0.00 0.00 0.00 3.41
235 236 0.909610 TGACCACACCCCTCTCCATC 60.910 60.000 0.00 0.00 0.00 3.51
236 237 1.616628 ACCACACCCCTCTCCATCC 60.617 63.158 0.00 0.00 0.00 3.51
237 238 1.307343 CCACACCCCTCTCCATCCT 60.307 63.158 0.00 0.00 0.00 3.24
238 239 1.341156 CCACACCCCTCTCCATCCTC 61.341 65.000 0.00 0.00 0.00 3.71
239 240 0.326048 CACACCCCTCTCCATCCTCT 60.326 60.000 0.00 0.00 0.00 3.69
240 241 0.031616 ACACCCCTCTCCATCCTCTC 60.032 60.000 0.00 0.00 0.00 3.20
241 242 0.762461 CACCCCTCTCCATCCTCTCC 60.762 65.000 0.00 0.00 0.00 3.71
242 243 1.152139 CCCCTCTCCATCCTCTCCC 60.152 68.421 0.00 0.00 0.00 4.30
243 244 1.673928 CCCCTCTCCATCCTCTCCCT 61.674 65.000 0.00 0.00 0.00 4.20
244 245 0.178935 CCCTCTCCATCCTCTCCCTC 60.179 65.000 0.00 0.00 0.00 4.30
245 246 0.178935 CCTCTCCATCCTCTCCCTCC 60.179 65.000 0.00 0.00 0.00 4.30
246 247 0.178935 CTCTCCATCCTCTCCCTCCC 60.179 65.000 0.00 0.00 0.00 4.30
247 248 1.152139 CTCCATCCTCTCCCTCCCC 60.152 68.421 0.00 0.00 0.00 4.81
248 249 1.630333 TCCATCCTCTCCCTCCCCT 60.630 63.158 0.00 0.00 0.00 4.79
249 250 1.152139 CCATCCTCTCCCTCCCCTC 60.152 68.421 0.00 0.00 0.00 4.30
250 251 1.673928 CCATCCTCTCCCTCCCCTCT 61.674 65.000 0.00 0.00 0.00 3.69
251 252 0.471591 CATCCTCTCCCTCCCCTCTG 60.472 65.000 0.00 0.00 0.00 3.35
252 253 2.325101 ATCCTCTCCCTCCCCTCTGC 62.325 65.000 0.00 0.00 0.00 4.26
253 254 2.695597 CTCTCCCTCCCCTCTGCT 59.304 66.667 0.00 0.00 0.00 4.24
254 255 1.002792 CTCTCCCTCCCCTCTGCTT 59.997 63.158 0.00 0.00 0.00 3.91
255 256 1.002274 TCTCCCTCCCCTCTGCTTC 59.998 63.158 0.00 0.00 0.00 3.86
256 257 2.364317 TCCCTCCCCTCTGCTTCG 60.364 66.667 0.00 0.00 0.00 3.79
257 258 2.685380 CCCTCCCCTCTGCTTCGT 60.685 66.667 0.00 0.00 0.00 3.85
258 259 2.294078 CCCTCCCCTCTGCTTCGTT 61.294 63.158 0.00 0.00 0.00 3.85
259 260 1.219393 CCTCCCCTCTGCTTCGTTC 59.781 63.158 0.00 0.00 0.00 3.95
260 261 1.261238 CCTCCCCTCTGCTTCGTTCT 61.261 60.000 0.00 0.00 0.00 3.01
261 262 0.108424 CTCCCCTCTGCTTCGTTCTG 60.108 60.000 0.00 0.00 0.00 3.02
262 263 1.078848 CCCCTCTGCTTCGTTCTGG 60.079 63.158 0.00 0.00 0.00 3.86
263 264 1.674057 CCCTCTGCTTCGTTCTGGT 59.326 57.895 0.00 0.00 0.00 4.00
264 265 0.390472 CCCTCTGCTTCGTTCTGGTC 60.390 60.000 0.00 0.00 0.00 4.02
265 266 0.390472 CCTCTGCTTCGTTCTGGTCC 60.390 60.000 0.00 0.00 0.00 4.46
266 267 0.390472 CTCTGCTTCGTTCTGGTCCC 60.390 60.000 0.00 0.00 0.00 4.46
267 268 1.376037 CTGCTTCGTTCTGGTCCCC 60.376 63.158 0.00 0.00 0.00 4.81
268 269 1.831652 CTGCTTCGTTCTGGTCCCCT 61.832 60.000 0.00 0.00 0.00 4.79
269 270 1.079057 GCTTCGTTCTGGTCCCCTC 60.079 63.158 0.00 0.00 0.00 4.30
270 271 1.597461 CTTCGTTCTGGTCCCCTCC 59.403 63.158 0.00 0.00 0.00 4.30
271 272 1.900545 CTTCGTTCTGGTCCCCTCCC 61.901 65.000 0.00 0.00 0.00 4.30
272 273 3.400054 CGTTCTGGTCCCCTCCCC 61.400 72.222 0.00 0.00 0.00 4.81
273 274 2.125225 GTTCTGGTCCCCTCCCCT 59.875 66.667 0.00 0.00 0.00 4.79
274 275 1.996187 GTTCTGGTCCCCTCCCCTC 60.996 68.421 0.00 0.00 0.00 4.30
275 276 3.268647 TTCTGGTCCCCTCCCCTCC 62.269 68.421 0.00 0.00 0.00 4.30
276 277 4.825679 CTGGTCCCCTCCCCTCCC 62.826 77.778 0.00 0.00 0.00 4.30
297 298 4.467084 CACCCCGCGCCACTATGT 62.467 66.667 0.00 0.00 0.00 2.29
298 299 4.157120 ACCCCGCGCCACTATGTC 62.157 66.667 0.00 0.00 0.00 3.06
299 300 4.910585 CCCCGCGCCACTATGTCC 62.911 72.222 0.00 0.00 0.00 4.02
300 301 4.155733 CCCGCGCCACTATGTCCA 62.156 66.667 0.00 0.00 0.00 4.02
301 302 2.586079 CCGCGCCACTATGTCCAG 60.586 66.667 0.00 0.00 0.00 3.86
302 303 3.264897 CGCGCCACTATGTCCAGC 61.265 66.667 0.00 0.00 0.00 4.85
303 304 2.187946 GCGCCACTATGTCCAGCT 59.812 61.111 0.00 0.00 0.00 4.24
304 305 1.884926 GCGCCACTATGTCCAGCTC 60.885 63.158 0.00 0.00 0.00 4.09
305 306 1.227380 CGCCACTATGTCCAGCTCC 60.227 63.158 0.00 0.00 0.00 4.70
306 307 1.907739 GCCACTATGTCCAGCTCCA 59.092 57.895 0.00 0.00 0.00 3.86
307 308 0.253044 GCCACTATGTCCAGCTCCAA 59.747 55.000 0.00 0.00 0.00 3.53
308 309 1.745141 GCCACTATGTCCAGCTCCAAG 60.745 57.143 0.00 0.00 0.00 3.61
309 310 1.833630 CCACTATGTCCAGCTCCAAGA 59.166 52.381 0.00 0.00 0.00 3.02
310 311 2.237143 CCACTATGTCCAGCTCCAAGAA 59.763 50.000 0.00 0.00 0.00 2.52
311 312 3.118112 CCACTATGTCCAGCTCCAAGAAT 60.118 47.826 0.00 0.00 0.00 2.40
312 313 4.521146 CACTATGTCCAGCTCCAAGAATT 58.479 43.478 0.00 0.00 0.00 2.17
313 314 4.574013 CACTATGTCCAGCTCCAAGAATTC 59.426 45.833 0.00 0.00 0.00 2.17
314 315 2.496899 TGTCCAGCTCCAAGAATTCC 57.503 50.000 0.65 0.00 0.00 3.01
315 316 1.339055 TGTCCAGCTCCAAGAATTCCG 60.339 52.381 0.65 0.00 0.00 4.30
316 317 0.984230 TCCAGCTCCAAGAATTCCGT 59.016 50.000 0.65 0.00 0.00 4.69
317 318 1.066143 TCCAGCTCCAAGAATTCCGTC 60.066 52.381 0.65 0.00 0.00 4.79
318 319 1.339055 CCAGCTCCAAGAATTCCGTCA 60.339 52.381 0.65 0.00 0.00 4.35
319 320 2.426522 CAGCTCCAAGAATTCCGTCAA 58.573 47.619 0.65 0.00 0.00 3.18
320 321 2.813754 CAGCTCCAAGAATTCCGTCAAA 59.186 45.455 0.65 0.00 0.00 2.69
321 322 3.253188 CAGCTCCAAGAATTCCGTCAAAA 59.747 43.478 0.65 0.00 0.00 2.44
322 323 3.888930 AGCTCCAAGAATTCCGTCAAAAA 59.111 39.130 0.65 0.00 0.00 1.94
345 346 1.884235 AAAGTCCAGCTCCAAGAACG 58.116 50.000 0.00 0.00 0.00 3.95
346 347 0.035458 AAGTCCAGCTCCAAGAACGG 59.965 55.000 0.00 0.00 0.00 4.44
347 348 0.832135 AGTCCAGCTCCAAGAACGGA 60.832 55.000 0.00 0.00 0.00 4.69
348 349 0.250513 GTCCAGCTCCAAGAACGGAT 59.749 55.000 0.00 0.00 33.56 4.18
349 350 0.537188 TCCAGCTCCAAGAACGGATC 59.463 55.000 0.00 0.00 33.56 3.36
350 351 0.462759 CCAGCTCCAAGAACGGATCC 60.463 60.000 0.00 0.00 33.56 3.36
351 352 0.807667 CAGCTCCAAGAACGGATCCG 60.808 60.000 32.20 32.20 46.03 4.18
352 353 1.521681 GCTCCAAGAACGGATCCGG 60.522 63.158 35.87 18.63 44.69 5.14
353 354 1.956629 GCTCCAAGAACGGATCCGGA 61.957 60.000 35.87 21.32 44.69 5.14
354 355 0.753262 CTCCAAGAACGGATCCGGAT 59.247 55.000 35.87 24.93 44.69 4.18
355 356 1.139058 CTCCAAGAACGGATCCGGATT 59.861 52.381 35.87 23.11 44.69 3.01
356 357 1.557832 TCCAAGAACGGATCCGGATTT 59.442 47.619 35.87 22.37 44.69 2.17
357 358 2.767394 TCCAAGAACGGATCCGGATTTA 59.233 45.455 35.87 15.17 44.69 1.40
358 359 3.131396 CCAAGAACGGATCCGGATTTAG 58.869 50.000 35.87 20.48 44.69 1.85
359 360 3.131396 CAAGAACGGATCCGGATTTAGG 58.869 50.000 35.87 16.07 44.69 2.69
360 361 1.070289 AGAACGGATCCGGATTTAGGC 59.930 52.381 35.87 15.85 44.69 3.93
361 362 0.108019 AACGGATCCGGATTTAGGCC 59.892 55.000 35.87 13.65 44.69 5.19
362 363 1.003718 CGGATCCGGATTTAGGCCC 60.004 63.158 26.95 12.88 35.56 5.80
363 364 1.764571 CGGATCCGGATTTAGGCCCA 61.765 60.000 26.95 0.00 35.56 5.36
364 365 0.476771 GGATCCGGATTTAGGCCCAA 59.523 55.000 20.22 0.00 0.00 4.12
365 366 1.075536 GGATCCGGATTTAGGCCCAAT 59.924 52.381 20.22 0.00 0.00 3.16
366 367 2.437413 GATCCGGATTTAGGCCCAATC 58.563 52.381 20.22 14.52 0.00 2.67
367 368 0.476771 TCCGGATTTAGGCCCAATCC 59.523 55.000 25.51 25.51 44.49 3.01
368 369 0.539669 CCGGATTTAGGCCCAATCCC 60.540 60.000 27.68 16.04 44.94 3.85
369 370 0.184933 CGGATTTAGGCCCAATCCCA 59.815 55.000 27.68 0.00 44.94 4.37
370 371 1.203050 CGGATTTAGGCCCAATCCCAT 60.203 52.381 27.68 2.58 44.94 4.00
371 372 2.756233 CGGATTTAGGCCCAATCCCATT 60.756 50.000 27.68 0.14 44.94 3.16
372 373 2.634453 GGATTTAGGCCCAATCCCATTG 59.366 50.000 25.18 0.00 42.82 2.82
373 374 3.575805 GATTTAGGCCCAATCCCATTGA 58.424 45.455 12.53 0.00 42.83 2.57
374 375 2.452600 TTAGGCCCAATCCCATTGAC 57.547 50.000 0.00 0.00 42.83 3.18
375 376 1.607225 TAGGCCCAATCCCATTGACT 58.393 50.000 0.00 0.00 42.83 3.41
376 377 0.032813 AGGCCCAATCCCATTGACTG 60.033 55.000 0.00 0.00 42.83 3.51
377 378 1.044790 GGCCCAATCCCATTGACTGG 61.045 60.000 0.00 0.00 42.83 4.00
386 387 1.813513 CCATTGACTGGGACACACTC 58.186 55.000 0.00 0.00 41.82 3.51
387 388 1.072173 CCATTGACTGGGACACACTCA 59.928 52.381 0.00 0.00 41.82 3.41
388 389 2.290514 CCATTGACTGGGACACACTCAT 60.291 50.000 0.00 0.00 41.82 2.90
389 390 2.549064 TTGACTGGGACACACTCATG 57.451 50.000 0.00 0.00 0.00 3.07
390 391 0.686789 TGACTGGGACACACTCATGG 59.313 55.000 0.00 0.00 0.00 3.66
391 392 0.674895 GACTGGGACACACTCATGGC 60.675 60.000 0.00 0.00 0.00 4.40
392 393 1.742880 CTGGGACACACTCATGGCG 60.743 63.158 0.00 0.00 0.00 5.69
393 394 2.436646 GGGACACACTCATGGCGG 60.437 66.667 0.00 0.00 0.00 6.13
394 395 2.662596 GGACACACTCATGGCGGA 59.337 61.111 0.00 0.00 0.00 5.54
395 396 1.221840 GGACACACTCATGGCGGAT 59.778 57.895 0.00 0.00 0.00 4.18
396 397 0.392998 GGACACACTCATGGCGGATT 60.393 55.000 0.00 0.00 0.00 3.01
397 398 1.009829 GACACACTCATGGCGGATTC 58.990 55.000 0.00 0.00 0.00 2.52
398 399 0.740868 ACACACTCATGGCGGATTCG 60.741 55.000 0.00 0.00 39.81 3.34
399 400 0.460109 CACACTCATGGCGGATTCGA 60.460 55.000 0.00 0.00 39.00 3.71
400 401 0.179100 ACACTCATGGCGGATTCGAG 60.179 55.000 0.00 0.00 39.00 4.04
401 402 1.227380 ACTCATGGCGGATTCGAGC 60.227 57.895 0.00 0.00 39.00 5.03
402 403 1.068753 CTCATGGCGGATTCGAGCT 59.931 57.895 0.00 0.00 39.00 4.09
403 404 0.943359 CTCATGGCGGATTCGAGCTC 60.943 60.000 2.73 2.73 39.00 4.09
404 405 1.958205 CATGGCGGATTCGAGCTCC 60.958 63.158 8.47 6.13 39.00 4.70
405 406 2.434843 ATGGCGGATTCGAGCTCCA 61.435 57.895 8.47 0.00 39.00 3.86
406 407 2.586357 GGCGGATTCGAGCTCCAC 60.586 66.667 8.47 6.32 39.00 4.02
407 408 2.956964 GCGGATTCGAGCTCCACG 60.957 66.667 8.47 6.95 39.00 4.94
408 409 2.956964 CGGATTCGAGCTCCACGC 60.957 66.667 8.47 0.00 39.00 5.34
409 410 2.586357 GGATTCGAGCTCCACGCC 60.586 66.667 8.47 1.18 40.39 5.68
410 411 2.184322 GATTCGAGCTCCACGCCA 59.816 61.111 8.47 0.00 40.39 5.69
411 412 1.227380 GATTCGAGCTCCACGCCAT 60.227 57.895 8.47 0.00 40.39 4.40
412 413 1.218230 GATTCGAGCTCCACGCCATC 61.218 60.000 8.47 0.00 40.39 3.51
413 414 2.650813 ATTCGAGCTCCACGCCATCC 62.651 60.000 8.47 0.00 40.39 3.51
414 415 4.147449 CGAGCTCCACGCCATCCA 62.147 66.667 8.47 0.00 40.39 3.41
415 416 2.268920 GAGCTCCACGCCATCCAA 59.731 61.111 0.87 0.00 40.39 3.53
416 417 2.045926 AGCTCCACGCCATCCAAC 60.046 61.111 0.00 0.00 40.39 3.77
417 418 2.359850 GCTCCACGCCATCCAACA 60.360 61.111 0.00 0.00 0.00 3.33
418 419 1.971167 GCTCCACGCCATCCAACAA 60.971 57.895 0.00 0.00 0.00 2.83
419 420 1.926511 GCTCCACGCCATCCAACAAG 61.927 60.000 0.00 0.00 0.00 3.16
420 421 0.321564 CTCCACGCCATCCAACAAGA 60.322 55.000 0.00 0.00 0.00 3.02
421 422 0.109532 TCCACGCCATCCAACAAGAA 59.890 50.000 0.00 0.00 0.00 2.52
422 423 0.523072 CCACGCCATCCAACAAGAAG 59.477 55.000 0.00 0.00 0.00 2.85
423 424 0.109597 CACGCCATCCAACAAGAAGC 60.110 55.000 0.00 0.00 0.00 3.86
424 425 0.250901 ACGCCATCCAACAAGAAGCT 60.251 50.000 0.00 0.00 0.00 3.74
425 426 0.449388 CGCCATCCAACAAGAAGCTC 59.551 55.000 0.00 0.00 0.00 4.09
426 427 1.538047 GCCATCCAACAAGAAGCTCA 58.462 50.000 0.00 0.00 0.00 4.26
427 428 1.200948 GCCATCCAACAAGAAGCTCAC 59.799 52.381 0.00 0.00 0.00 3.51
428 429 1.815003 CCATCCAACAAGAAGCTCACC 59.185 52.381 0.00 0.00 0.00 4.02
429 430 1.815003 CATCCAACAAGAAGCTCACCC 59.185 52.381 0.00 0.00 0.00 4.61
430 431 0.110486 TCCAACAAGAAGCTCACCCC 59.890 55.000 0.00 0.00 0.00 4.95
431 432 0.895559 CCAACAAGAAGCTCACCCCC 60.896 60.000 0.00 0.00 0.00 5.40
445 446 3.712907 CCCCCGTCGGTTGTGGAT 61.713 66.667 11.06 0.00 0.00 3.41
446 447 2.435938 CCCCGTCGGTTGTGGATG 60.436 66.667 11.06 0.00 0.00 3.51
447 448 2.660206 CCCGTCGGTTGTGGATGA 59.340 61.111 11.06 0.00 0.00 2.92
448 449 1.004320 CCCGTCGGTTGTGGATGAA 60.004 57.895 11.06 0.00 0.00 2.57
449 450 1.296056 CCCGTCGGTTGTGGATGAAC 61.296 60.000 11.06 0.00 0.00 3.18
450 451 0.601576 CCGTCGGTTGTGGATGAACA 60.602 55.000 2.08 0.00 0.00 3.18
451 452 1.222300 CGTCGGTTGTGGATGAACAA 58.778 50.000 0.00 0.00 37.71 2.83
452 453 1.194547 CGTCGGTTGTGGATGAACAAG 59.805 52.381 0.00 0.00 40.60 3.16
453 454 1.535462 GTCGGTTGTGGATGAACAAGG 59.465 52.381 0.00 0.00 40.60 3.61
454 455 1.418264 TCGGTTGTGGATGAACAAGGA 59.582 47.619 0.00 0.00 40.60 3.36
455 456 1.535462 CGGTTGTGGATGAACAAGGAC 59.465 52.381 0.00 0.00 40.60 3.85
456 457 2.582052 GGTTGTGGATGAACAAGGACA 58.418 47.619 0.00 0.00 40.60 4.02
457 458 2.554032 GGTTGTGGATGAACAAGGACAG 59.446 50.000 0.00 0.00 40.60 3.51
458 459 3.476552 GTTGTGGATGAACAAGGACAGA 58.523 45.455 0.00 0.00 40.60 3.41
459 460 4.074970 GTTGTGGATGAACAAGGACAGAT 58.925 43.478 0.00 0.00 40.60 2.90
460 461 3.942829 TGTGGATGAACAAGGACAGATC 58.057 45.455 0.00 0.00 0.00 2.75
461 462 3.584406 TGTGGATGAACAAGGACAGATCT 59.416 43.478 0.00 0.00 0.00 2.75
462 463 4.042062 TGTGGATGAACAAGGACAGATCTT 59.958 41.667 0.00 0.00 0.00 2.40
463 464 5.006386 GTGGATGAACAAGGACAGATCTTT 58.994 41.667 0.00 0.00 0.00 2.52
464 465 5.005740 TGGATGAACAAGGACAGATCTTTG 58.994 41.667 0.00 0.00 45.18 2.77
465 466 5.221904 TGGATGAACAAGGACAGATCTTTGA 60.222 40.000 11.03 0.00 42.99 2.69
466 467 5.353678 GGATGAACAAGGACAGATCTTTGAG 59.646 44.000 11.03 0.00 42.99 3.02
467 468 4.067896 TGAACAAGGACAGATCTTTGAGC 58.932 43.478 11.03 4.18 42.99 4.26
468 469 4.202398 TGAACAAGGACAGATCTTTGAGCT 60.202 41.667 11.03 0.00 42.99 4.09
469 470 3.936564 ACAAGGACAGATCTTTGAGCTC 58.063 45.455 6.82 6.82 42.99 4.09
470 471 2.928757 CAAGGACAGATCTTTGAGCTCG 59.071 50.000 9.64 0.00 42.99 5.03
471 472 1.480137 AGGACAGATCTTTGAGCTCGG 59.520 52.381 9.64 1.97 0.00 4.63
472 473 1.285578 GACAGATCTTTGAGCTCGGC 58.714 55.000 9.64 0.00 0.00 5.54
473 474 0.459237 ACAGATCTTTGAGCTCGGCG 60.459 55.000 9.64 0.00 0.00 6.46
474 475 1.142748 AGATCTTTGAGCTCGGCGG 59.857 57.895 9.64 0.00 0.00 6.13
475 476 2.512515 ATCTTTGAGCTCGGCGGC 60.513 61.111 9.64 9.87 0.00 6.53
476 477 4.760047 TCTTTGAGCTCGGCGGCC 62.760 66.667 9.54 9.54 0.00 6.13
477 478 4.767255 CTTTGAGCTCGGCGGCCT 62.767 66.667 18.34 3.06 0.00 5.19
509 510 0.594796 GCAGCCGTGGTTTTGTTGAG 60.595 55.000 0.00 0.00 0.00 3.02
519 520 3.175929 GGTTTTGTTGAGGTTTGTGTCG 58.824 45.455 0.00 0.00 0.00 4.35
524 525 0.531090 TTGAGGTTTGTGTCGTCCCG 60.531 55.000 0.00 0.00 0.00 5.14
525 526 1.364901 GAGGTTTGTGTCGTCCCGA 59.635 57.895 0.00 0.00 0.00 5.14
532 534 3.770040 TGTCGTCCCGATGGCCTG 61.770 66.667 3.32 0.00 38.42 4.85
587 589 4.451150 TGCACTCCCGGACGATGC 62.451 66.667 0.73 8.09 36.81 3.91
600 602 1.219124 CGATGCTGGGTGCTAGTGT 59.781 57.895 0.00 0.00 43.37 3.55
617 619 0.178955 TGTCACGTCCTCCTAACCCA 60.179 55.000 0.00 0.00 0.00 4.51
630 632 1.207089 CTAACCCATGACGGCTTCTGA 59.793 52.381 0.00 0.00 0.00 3.27
642 644 0.110010 GCTTCTGAAGTTCAAGGCGC 60.110 55.000 17.97 0.00 0.00 6.53
643 645 1.229428 CTTCTGAAGTTCAAGGCGCA 58.771 50.000 10.83 0.00 0.00 6.09
644 646 1.196354 CTTCTGAAGTTCAAGGCGCAG 59.804 52.381 10.83 0.00 0.00 5.18
646 648 0.886490 CTGAAGTTCAAGGCGCAGGT 60.886 55.000 10.83 0.00 0.00 4.00
655 657 3.188786 GGCGCAGGTAGCTTGTCG 61.189 66.667 10.83 0.00 42.61 4.35
658 660 3.854459 GCAGGTAGCTTGTCGCGC 61.854 66.667 0.00 0.00 45.59 6.86
661 663 3.188786 GGTAGCTTGTCGCGCCAG 61.189 66.667 0.00 0.00 45.59 4.85
692 694 1.227383 GACCAAGGCCGGATCCAAT 59.773 57.895 13.41 0.00 0.00 3.16
697 699 0.183731 AAGGCCGGATCCAATCTTCC 59.816 55.000 13.41 2.88 0.00 3.46
706 708 0.537188 TCCAATCTTCCGCTCTGGTC 59.463 55.000 0.00 0.00 39.52 4.02
708 710 1.153549 AATCTTCCGCTCTGGTCGC 60.154 57.895 0.00 0.00 39.52 5.19
709 711 2.579684 AATCTTCCGCTCTGGTCGCC 62.580 60.000 0.00 0.00 39.52 5.54
716 718 4.785453 CTCTGGTCGCCCCCTTGC 62.785 72.222 0.00 0.00 0.00 4.01
734 736 1.374252 CCCTTTGACTCCGACGTGG 60.374 63.158 0.00 0.00 40.09 4.94
741 743 1.803366 GACTCCGACGTGGACCAACT 61.803 60.000 0.00 0.00 43.74 3.16
755 757 3.335579 GACCAACTAGTCCATGTTGTCC 58.664 50.000 0.00 0.00 41.16 4.02
765 767 1.001641 ATGTTGTCCTGCCTCCTGC 60.002 57.895 0.00 0.00 41.77 4.85
766 768 2.743928 GTTGTCCTGCCTCCTGCG 60.744 66.667 0.00 0.00 45.60 5.18
793 795 1.388547 TTGACCACTGCCACAAGAAC 58.611 50.000 0.00 0.00 0.00 3.01
796 798 1.095228 ACCACTGCCACAAGAACGTG 61.095 55.000 0.00 0.00 36.61 4.49
800 802 0.588252 CTGCCACAAGAACGTGAAGG 59.412 55.000 0.00 0.00 39.34 3.46
801 803 1.282875 GCCACAAGAACGTGAAGGC 59.717 57.895 0.00 10.94 39.34 4.35
809 811 0.452784 GAACGTGAAGGCATTGCGAC 60.453 55.000 10.84 0.00 0.00 5.19
811 813 0.955428 ACGTGAAGGCATTGCGACAT 60.955 50.000 10.84 0.00 0.00 3.06
813 815 0.179156 GTGAAGGCATTGCGACATGG 60.179 55.000 1.91 0.00 0.00 3.66
819 821 2.016171 CATTGCGACATGGCATCGA 58.984 52.632 14.21 0.00 43.52 3.59
821 823 1.162181 ATTGCGACATGGCATCGAGG 61.162 55.000 14.21 0.00 43.52 4.63
833 835 1.153168 ATCGAGGCGTCCAAATGGG 60.153 57.895 0.00 0.00 35.41 4.00
835 837 1.674322 CGAGGCGTCCAAATGGGTT 60.674 57.895 0.00 0.00 38.11 4.11
1351 1443 3.007323 ACGCCTACACCTTCCCCC 61.007 66.667 0.00 0.00 0.00 5.40
1783 1888 0.667792 GGCGAGGGTGCTATTCGATC 60.668 60.000 0.00 0.00 36.49 3.69
2223 2328 4.514441 CCAATGGATGATCTTAGTGTGCTC 59.486 45.833 0.00 0.00 0.00 4.26
2383 2490 3.395607 ACATTTGGATCAGGCTAGGCATA 59.604 43.478 19.70 6.04 0.00 3.14
2547 2654 9.685828 GTCTATGTTCTTCTGTCCAATATCTAC 57.314 37.037 0.00 0.00 0.00 2.59
2613 2720 3.009363 TGATGAGTGCTGAAGGGATGAAA 59.991 43.478 0.00 0.00 0.00 2.69
2780 2887 3.317711 TGCACCGAAATTGTGTTGAATCT 59.682 39.130 0.00 0.00 36.11 2.40
2816 2923 6.265196 TGCCTGTTAGTTGATTGAACATTCTT 59.735 34.615 0.00 0.00 36.98 2.52
2867 2975 2.802816 CTCTTGAAAACTCAGTGTCCCG 59.197 50.000 0.00 0.00 0.00 5.14
3303 3419 7.095523 CCATTTTGCTTTCATTGACTTACTTGG 60.096 37.037 0.00 0.00 0.00 3.61
3387 3503 7.118971 AGACAAACTCTATTTGAGCTTGATGTC 59.881 37.037 15.11 11.82 46.34 3.06
3402 3518 5.243954 GCTTGATGTCTTTACCCCTTCTTTT 59.756 40.000 0.00 0.00 0.00 2.27
3457 3573 4.883585 GGCTACCAGTTGATGATCATGAAA 59.116 41.667 14.30 4.59 0.00 2.69
3499 3615 6.206829 AGGCTTAACCACAAGTTTGATCTTAC 59.793 38.462 0.00 0.00 43.14 2.34
3598 3714 4.797604 GCTGGCGTCATCAAGATAGTATGT 60.798 45.833 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.589675 TGGTTGGGTTGTCCGCCC 62.590 66.667 0.00 0.00 46.26 6.13
5 6 3.292159 GTGGTTGGGTTGTCCGCC 61.292 66.667 0.00 0.00 38.76 6.13
6 7 3.656045 CGTGGTTGGGTTGTCCGC 61.656 66.667 0.00 0.00 38.76 5.54
7 8 1.378124 AAACGTGGTTGGGTTGTCCG 61.378 55.000 0.00 0.00 38.76 4.79
8 9 0.382873 GAAACGTGGTTGGGTTGTCC 59.617 55.000 0.00 0.00 0.00 4.02
9 10 0.028374 CGAAACGTGGTTGGGTTGTC 59.972 55.000 0.00 0.00 0.00 3.18
10 11 0.677414 ACGAAACGTGGTTGGGTTGT 60.677 50.000 0.00 0.00 39.18 3.32
11 12 1.003652 GTACGAAACGTGGTTGGGTTG 60.004 52.381 7.05 0.00 41.39 3.77
12 13 1.298602 GTACGAAACGTGGTTGGGTT 58.701 50.000 7.05 0.00 41.39 4.11
13 14 0.532640 GGTACGAAACGTGGTTGGGT 60.533 55.000 7.05 0.00 41.39 4.51
14 15 0.532417 TGGTACGAAACGTGGTTGGG 60.532 55.000 7.05 0.00 41.39 4.12
15 16 1.297664 TTGGTACGAAACGTGGTTGG 58.702 50.000 7.05 0.00 41.39 3.77
16 17 3.402058 TTTTGGTACGAAACGTGGTTG 57.598 42.857 2.16 0.00 41.39 3.77
17 18 4.352887 CATTTTTGGTACGAAACGTGGTT 58.647 39.130 2.16 0.00 41.39 3.67
18 19 3.792794 GCATTTTTGGTACGAAACGTGGT 60.793 43.478 2.16 0.00 41.39 4.16
19 20 2.722116 GCATTTTTGGTACGAAACGTGG 59.278 45.455 2.16 0.00 41.39 4.94
20 21 2.722116 GGCATTTTTGGTACGAAACGTG 59.278 45.455 2.16 6.24 41.39 4.49
21 22 2.358267 TGGCATTTTTGGTACGAAACGT 59.642 40.909 2.16 1.91 44.35 3.99
22 23 2.722116 GTGGCATTTTTGGTACGAAACG 59.278 45.455 2.16 0.00 0.00 3.60
23 24 3.707793 TGTGGCATTTTTGGTACGAAAC 58.292 40.909 2.16 0.00 0.00 2.78
24 25 4.592485 ATGTGGCATTTTTGGTACGAAA 57.408 36.364 0.00 0.00 0.00 3.46
25 26 5.462405 GTTATGTGGCATTTTTGGTACGAA 58.538 37.500 0.00 0.00 0.00 3.85
26 27 4.082679 GGTTATGTGGCATTTTTGGTACGA 60.083 41.667 0.00 0.00 0.00 3.43
27 28 4.170256 GGTTATGTGGCATTTTTGGTACG 58.830 43.478 0.00 0.00 0.00 3.67
28 29 5.140747 TGGTTATGTGGCATTTTTGGTAC 57.859 39.130 0.00 0.00 0.00 3.34
29 30 5.808366 TTGGTTATGTGGCATTTTTGGTA 57.192 34.783 0.00 0.00 0.00 3.25
30 31 4.696479 TTGGTTATGTGGCATTTTTGGT 57.304 36.364 0.00 0.00 0.00 3.67
31 32 4.215185 GGTTTGGTTATGTGGCATTTTTGG 59.785 41.667 0.00 0.00 0.00 3.28
32 33 4.215185 GGGTTTGGTTATGTGGCATTTTTG 59.785 41.667 0.00 0.00 0.00 2.44
33 34 4.103943 AGGGTTTGGTTATGTGGCATTTTT 59.896 37.500 0.00 0.00 0.00 1.94
34 35 3.650461 AGGGTTTGGTTATGTGGCATTTT 59.350 39.130 0.00 0.00 0.00 1.82
35 36 3.247162 AGGGTTTGGTTATGTGGCATTT 58.753 40.909 0.00 0.00 0.00 2.32
36 37 2.901291 AGGGTTTGGTTATGTGGCATT 58.099 42.857 0.00 0.00 0.00 3.56
37 38 2.621556 AGGGTTTGGTTATGTGGCAT 57.378 45.000 0.00 0.00 0.00 4.40
38 39 2.390225 AAGGGTTTGGTTATGTGGCA 57.610 45.000 0.00 0.00 0.00 4.92
39 40 5.414789 AATAAAGGGTTTGGTTATGTGGC 57.585 39.130 0.00 0.00 0.00 5.01
40 41 6.071840 TCGAAATAAAGGGTTTGGTTATGTGG 60.072 38.462 0.00 0.00 0.00 4.17
41 42 6.915349 TCGAAATAAAGGGTTTGGTTATGTG 58.085 36.000 0.00 0.00 0.00 3.21
42 43 6.349860 GCTCGAAATAAAGGGTTTGGTTATGT 60.350 38.462 0.00 0.00 0.00 2.29
43 44 6.033966 GCTCGAAATAAAGGGTTTGGTTATG 58.966 40.000 0.00 0.00 0.00 1.90
44 45 5.949952 AGCTCGAAATAAAGGGTTTGGTTAT 59.050 36.000 0.00 0.00 0.00 1.89
45 46 5.318630 AGCTCGAAATAAAGGGTTTGGTTA 58.681 37.500 0.00 0.00 0.00 2.85
46 47 4.149598 AGCTCGAAATAAAGGGTTTGGTT 58.850 39.130 0.00 0.00 0.00 3.67
47 48 3.756963 GAGCTCGAAATAAAGGGTTTGGT 59.243 43.478 0.00 0.00 0.00 3.67
48 49 3.756434 TGAGCTCGAAATAAAGGGTTTGG 59.244 43.478 9.64 0.00 0.00 3.28
49 50 5.371115 TTGAGCTCGAAATAAAGGGTTTG 57.629 39.130 9.64 0.00 0.00 2.93
50 51 6.015434 ACATTTGAGCTCGAAATAAAGGGTTT 60.015 34.615 20.22 0.00 0.00 3.27
51 52 5.476945 ACATTTGAGCTCGAAATAAAGGGTT 59.523 36.000 20.22 0.00 0.00 4.11
52 53 5.010282 ACATTTGAGCTCGAAATAAAGGGT 58.990 37.500 20.22 11.37 0.00 4.34
53 54 5.567138 ACATTTGAGCTCGAAATAAAGGG 57.433 39.130 20.22 10.86 0.00 3.95
54 55 6.611381 TGAACATTTGAGCTCGAAATAAAGG 58.389 36.000 20.22 12.64 0.00 3.11
55 56 6.744537 CCTGAACATTTGAGCTCGAAATAAAG 59.255 38.462 20.22 13.23 0.00 1.85
56 57 6.206634 ACCTGAACATTTGAGCTCGAAATAAA 59.793 34.615 20.22 9.40 0.00 1.40
57 58 5.705441 ACCTGAACATTTGAGCTCGAAATAA 59.295 36.000 20.22 0.00 0.00 1.40
58 59 5.245531 ACCTGAACATTTGAGCTCGAAATA 58.754 37.500 20.22 0.00 0.00 1.40
59 60 4.074970 ACCTGAACATTTGAGCTCGAAAT 58.925 39.130 20.22 16.86 0.00 2.17
60 61 3.476552 ACCTGAACATTTGAGCTCGAAA 58.523 40.909 20.22 15.45 0.00 3.46
61 62 3.126001 ACCTGAACATTTGAGCTCGAA 57.874 42.857 18.73 18.73 0.00 3.71
62 63 2.807967 CAACCTGAACATTTGAGCTCGA 59.192 45.455 9.64 3.88 0.00 4.04
63 64 2.549754 ACAACCTGAACATTTGAGCTCG 59.450 45.455 9.64 0.00 0.00 5.03
64 65 3.057946 GGACAACCTGAACATTTGAGCTC 60.058 47.826 6.82 6.82 0.00 4.09
65 66 2.887152 GGACAACCTGAACATTTGAGCT 59.113 45.455 0.00 0.00 0.00 4.09
66 67 2.622942 TGGACAACCTGAACATTTGAGC 59.377 45.455 0.00 0.00 37.04 4.26
67 68 4.097741 TGTTGGACAACCTGAACATTTGAG 59.902 41.667 12.21 0.00 40.46 3.02
68 69 4.019858 TGTTGGACAACCTGAACATTTGA 58.980 39.130 12.21 0.00 40.46 2.69
69 70 4.383850 TGTTGGACAACCTGAACATTTG 57.616 40.909 12.21 0.00 40.46 2.32
70 71 4.039124 GGATGTTGGACAACCTGAACATTT 59.961 41.667 12.21 0.00 40.48 2.32
71 72 3.573967 GGATGTTGGACAACCTGAACATT 59.426 43.478 12.21 0.00 40.48 2.71
72 73 3.157087 GGATGTTGGACAACCTGAACAT 58.843 45.455 12.21 0.00 41.95 2.71
73 74 2.582052 GGATGTTGGACAACCTGAACA 58.418 47.619 12.21 0.00 37.96 3.18
79 80 3.756963 GGTTTAGAGGATGTTGGACAACC 59.243 47.826 12.21 2.87 40.90 3.77
80 81 3.756963 GGGTTTAGAGGATGTTGGACAAC 59.243 47.826 8.19 8.19 41.50 3.32
81 82 3.396276 TGGGTTTAGAGGATGTTGGACAA 59.604 43.478 0.00 0.00 0.00 3.18
82 83 2.983192 TGGGTTTAGAGGATGTTGGACA 59.017 45.455 0.00 0.00 0.00 4.02
83 84 3.610911 CTGGGTTTAGAGGATGTTGGAC 58.389 50.000 0.00 0.00 0.00 4.02
84 85 2.026262 GCTGGGTTTAGAGGATGTTGGA 60.026 50.000 0.00 0.00 0.00 3.53
85 86 2.369394 GCTGGGTTTAGAGGATGTTGG 58.631 52.381 0.00 0.00 0.00 3.77
86 87 2.290896 TGGCTGGGTTTAGAGGATGTTG 60.291 50.000 0.00 0.00 0.00 3.33
87 88 1.992557 TGGCTGGGTTTAGAGGATGTT 59.007 47.619 0.00 0.00 0.00 2.71
88 89 1.668826 TGGCTGGGTTTAGAGGATGT 58.331 50.000 0.00 0.00 0.00 3.06
89 90 2.806945 TTGGCTGGGTTTAGAGGATG 57.193 50.000 0.00 0.00 0.00 3.51
90 91 4.751028 GCATATTGGCTGGGTTTAGAGGAT 60.751 45.833 0.00 0.00 0.00 3.24
91 92 3.435026 GCATATTGGCTGGGTTTAGAGGA 60.435 47.826 0.00 0.00 0.00 3.71
92 93 2.887152 GCATATTGGCTGGGTTTAGAGG 59.113 50.000 0.00 0.00 0.00 3.69
93 94 2.549754 CGCATATTGGCTGGGTTTAGAG 59.450 50.000 0.00 0.00 0.00 2.43
94 95 2.571212 CGCATATTGGCTGGGTTTAGA 58.429 47.619 0.00 0.00 0.00 2.10
95 96 1.608590 CCGCATATTGGCTGGGTTTAG 59.391 52.381 0.00 0.00 0.00 1.85
96 97 1.686355 CCGCATATTGGCTGGGTTTA 58.314 50.000 0.00 0.00 0.00 2.01
97 98 1.042559 CCCGCATATTGGCTGGGTTT 61.043 55.000 0.00 0.00 40.44 3.27
98 99 1.455587 CCCGCATATTGGCTGGGTT 60.456 57.895 0.00 0.00 40.44 4.11
99 100 2.195683 CCCGCATATTGGCTGGGT 59.804 61.111 0.00 0.00 40.44 4.51
100 101 1.601759 CTCCCGCATATTGGCTGGG 60.602 63.158 8.21 8.21 44.01 4.45
101 102 1.601759 CCTCCCGCATATTGGCTGG 60.602 63.158 0.00 0.00 39.28 4.85
102 103 0.037303 ATCCTCCCGCATATTGGCTG 59.963 55.000 0.00 0.00 0.00 4.85
103 104 0.773644 AATCCTCCCGCATATTGGCT 59.226 50.000 0.00 0.00 0.00 4.75
104 105 1.270550 CAAATCCTCCCGCATATTGGC 59.729 52.381 0.00 0.00 0.00 4.52
105 106 2.816087 CTCAAATCCTCCCGCATATTGG 59.184 50.000 0.00 0.00 0.00 3.16
106 107 2.816087 CCTCAAATCCTCCCGCATATTG 59.184 50.000 0.00 0.00 0.00 1.90
107 108 2.815589 GCCTCAAATCCTCCCGCATATT 60.816 50.000 0.00 0.00 0.00 1.28
108 109 1.271597 GCCTCAAATCCTCCCGCATAT 60.272 52.381 0.00 0.00 0.00 1.78
109 110 0.108585 GCCTCAAATCCTCCCGCATA 59.891 55.000 0.00 0.00 0.00 3.14
110 111 1.152881 GCCTCAAATCCTCCCGCAT 60.153 57.895 0.00 0.00 0.00 4.73
111 112 2.272146 GCCTCAAATCCTCCCGCA 59.728 61.111 0.00 0.00 0.00 5.69
112 113 2.666596 ATCGCCTCAAATCCTCCCGC 62.667 60.000 0.00 0.00 0.00 6.13
113 114 0.179045 AATCGCCTCAAATCCTCCCG 60.179 55.000 0.00 0.00 0.00 5.14
114 115 1.134098 TGAATCGCCTCAAATCCTCCC 60.134 52.381 0.00 0.00 0.00 4.30
115 116 2.332063 TGAATCGCCTCAAATCCTCC 57.668 50.000 0.00 0.00 0.00 4.30
116 117 3.440173 TGTTTGAATCGCCTCAAATCCTC 59.560 43.478 12.85 3.86 44.76 3.71
117 118 3.191371 GTGTTTGAATCGCCTCAAATCCT 59.809 43.478 12.85 0.00 44.76 3.24
118 119 3.501950 GTGTTTGAATCGCCTCAAATCC 58.498 45.455 12.85 4.66 44.76 3.01
119 120 3.163594 CGTGTTTGAATCGCCTCAAATC 58.836 45.455 12.85 9.46 44.76 2.17
120 121 2.095263 CCGTGTTTGAATCGCCTCAAAT 60.095 45.455 12.85 0.00 44.76 2.32
121 122 1.265635 CCGTGTTTGAATCGCCTCAAA 59.734 47.619 7.43 7.43 41.80 2.69
122 123 0.871722 CCGTGTTTGAATCGCCTCAA 59.128 50.000 0.00 0.00 33.48 3.02
123 124 1.573829 GCCGTGTTTGAATCGCCTCA 61.574 55.000 0.00 0.00 0.00 3.86
124 125 1.134694 GCCGTGTTTGAATCGCCTC 59.865 57.895 0.00 0.00 0.00 4.70
125 126 2.332654 GGCCGTGTTTGAATCGCCT 61.333 57.895 0.00 0.00 0.00 5.52
126 127 2.178273 GGCCGTGTTTGAATCGCC 59.822 61.111 0.00 0.00 0.00 5.54
127 128 2.202298 CGGCCGTGTTTGAATCGC 60.202 61.111 19.50 0.00 0.00 4.58
128 129 1.131826 GACGGCCGTGTTTGAATCG 59.868 57.895 39.65 1.41 0.00 3.34
129 130 0.110373 GTGACGGCCGTGTTTGAATC 60.110 55.000 39.65 19.37 0.00 2.52
130 131 1.837538 CGTGACGGCCGTGTTTGAAT 61.838 55.000 39.65 8.28 0.00 2.57
131 132 2.526993 CGTGACGGCCGTGTTTGAA 61.527 57.895 39.65 11.01 0.00 2.69
132 133 2.962786 CGTGACGGCCGTGTTTGA 60.963 61.111 39.65 11.19 0.00 2.69
133 134 3.218209 GACGTGACGGCCGTGTTTG 62.218 63.158 39.65 23.91 38.92 2.93
134 135 2.963320 GACGTGACGGCCGTGTTT 60.963 61.111 39.65 17.31 38.92 2.83
144 145 4.736896 GGGCCAGTCCGACGTGAC 62.737 72.222 4.39 0.00 34.94 3.67
146 147 3.605749 ATTGGGCCAGTCCGACGTG 62.606 63.158 6.23 0.00 34.94 4.49
147 148 3.310860 GATTGGGCCAGTCCGACGT 62.311 63.158 17.65 0.00 34.94 4.34
148 149 2.511600 GATTGGGCCAGTCCGACG 60.512 66.667 17.65 0.00 34.94 5.12
149 150 2.124695 GGATTGGGCCAGTCCGAC 60.125 66.667 29.51 9.90 31.00 4.79
150 151 3.407967 GGGATTGGGCCAGTCCGA 61.408 66.667 33.76 9.69 40.52 4.55
151 152 3.727258 TGGGATTGGGCCAGTCCG 61.727 66.667 33.76 0.00 40.52 4.79
152 153 2.043953 GTGGGATTGGGCCAGTCC 60.044 66.667 33.70 33.70 39.17 3.85
153 154 0.541764 TTTGTGGGATTGGGCCAGTC 60.542 55.000 19.95 19.95 0.00 3.51
154 155 0.105246 TTTTGTGGGATTGGGCCAGT 60.105 50.000 6.23 2.72 0.00 4.00
155 156 1.055040 TTTTTGTGGGATTGGGCCAG 58.945 50.000 6.23 0.00 0.00 4.85
156 157 3.247424 TTTTTGTGGGATTGGGCCA 57.753 47.368 0.00 0.00 0.00 5.36
171 172 2.290323 CGTCTGGAGGAGATGGGTTTTT 60.290 50.000 0.00 0.00 34.42 1.94
172 173 1.279271 CGTCTGGAGGAGATGGGTTTT 59.721 52.381 0.00 0.00 34.42 2.43
173 174 0.905357 CGTCTGGAGGAGATGGGTTT 59.095 55.000 0.00 0.00 34.42 3.27
174 175 0.252284 ACGTCTGGAGGAGATGGGTT 60.252 55.000 0.00 0.00 41.51 4.11
175 176 0.684805 GACGTCTGGAGGAGATGGGT 60.685 60.000 8.70 0.00 41.51 4.51
176 177 1.729470 CGACGTCTGGAGGAGATGGG 61.729 65.000 14.70 0.00 41.51 4.00
177 178 0.748367 TCGACGTCTGGAGGAGATGG 60.748 60.000 14.70 0.00 41.51 3.51
178 179 1.095600 TTCGACGTCTGGAGGAGATG 58.904 55.000 14.70 0.00 42.73 2.90
179 180 1.096416 GTTCGACGTCTGGAGGAGAT 58.904 55.000 14.70 0.00 31.63 2.75
180 181 0.959372 GGTTCGACGTCTGGAGGAGA 60.959 60.000 14.70 0.00 0.00 3.71
181 182 1.241990 TGGTTCGACGTCTGGAGGAG 61.242 60.000 14.70 0.00 0.00 3.69
182 183 0.824595 TTGGTTCGACGTCTGGAGGA 60.825 55.000 14.70 0.00 0.00 3.71
183 184 0.032952 TTTGGTTCGACGTCTGGAGG 59.967 55.000 14.70 0.00 0.00 4.30
184 185 1.137513 GTTTGGTTCGACGTCTGGAG 58.862 55.000 14.70 0.00 0.00 3.86
185 186 0.249573 GGTTTGGTTCGACGTCTGGA 60.250 55.000 14.70 1.01 0.00 3.86
186 187 1.226030 GGGTTTGGTTCGACGTCTGG 61.226 60.000 14.70 0.00 0.00 3.86
187 188 0.249741 AGGGTTTGGTTCGACGTCTG 60.250 55.000 14.70 7.51 0.00 3.51
188 189 1.000171 GTAGGGTTTGGTTCGACGTCT 60.000 52.381 14.70 0.00 0.00 4.18
189 190 1.269726 TGTAGGGTTTGGTTCGACGTC 60.270 52.381 5.18 5.18 0.00 4.34
190 191 0.752054 TGTAGGGTTTGGTTCGACGT 59.248 50.000 0.00 0.00 0.00 4.34
191 192 1.997606 GATGTAGGGTTTGGTTCGACG 59.002 52.381 0.00 0.00 0.00 5.12
192 193 2.740447 GTGATGTAGGGTTTGGTTCGAC 59.260 50.000 0.00 0.00 0.00 4.20
193 194 2.289819 GGTGATGTAGGGTTTGGTTCGA 60.290 50.000 0.00 0.00 0.00 3.71
194 195 2.081462 GGTGATGTAGGGTTTGGTTCG 58.919 52.381 0.00 0.00 0.00 3.95
195 196 3.434940 AGGTGATGTAGGGTTTGGTTC 57.565 47.619 0.00 0.00 0.00 3.62
196 197 3.139397 TCAAGGTGATGTAGGGTTTGGTT 59.861 43.478 0.00 0.00 0.00 3.67
197 198 2.714250 TCAAGGTGATGTAGGGTTTGGT 59.286 45.455 0.00 0.00 0.00 3.67
198 199 3.081804 GTCAAGGTGATGTAGGGTTTGG 58.918 50.000 0.00 0.00 0.00 3.28
199 200 3.081804 GGTCAAGGTGATGTAGGGTTTG 58.918 50.000 0.00 0.00 0.00 2.93
200 201 2.714250 TGGTCAAGGTGATGTAGGGTTT 59.286 45.455 0.00 0.00 0.00 3.27
201 202 2.039879 GTGGTCAAGGTGATGTAGGGTT 59.960 50.000 0.00 0.00 0.00 4.11
202 203 1.628846 GTGGTCAAGGTGATGTAGGGT 59.371 52.381 0.00 0.00 0.00 4.34
203 204 1.628340 TGTGGTCAAGGTGATGTAGGG 59.372 52.381 0.00 0.00 0.00 3.53
204 205 2.615493 GGTGTGGTCAAGGTGATGTAGG 60.615 54.545 0.00 0.00 0.00 3.18
205 206 2.615493 GGGTGTGGTCAAGGTGATGTAG 60.615 54.545 0.00 0.00 0.00 2.74
206 207 1.349688 GGGTGTGGTCAAGGTGATGTA 59.650 52.381 0.00 0.00 0.00 2.29
207 208 0.110486 GGGTGTGGTCAAGGTGATGT 59.890 55.000 0.00 0.00 0.00 3.06
208 209 0.609131 GGGGTGTGGTCAAGGTGATG 60.609 60.000 0.00 0.00 0.00 3.07
209 210 0.772124 AGGGGTGTGGTCAAGGTGAT 60.772 55.000 0.00 0.00 0.00 3.06
210 211 1.385347 AGGGGTGTGGTCAAGGTGA 60.385 57.895 0.00 0.00 0.00 4.02
211 212 1.073199 GAGGGGTGTGGTCAAGGTG 59.927 63.158 0.00 0.00 0.00 4.00
212 213 1.073706 AGAGGGGTGTGGTCAAGGT 60.074 57.895 0.00 0.00 0.00 3.50
213 214 1.679898 GAGAGGGGTGTGGTCAAGG 59.320 63.158 0.00 0.00 0.00 3.61
214 215 1.127567 TGGAGAGGGGTGTGGTCAAG 61.128 60.000 0.00 0.00 0.00 3.02
215 216 0.475632 ATGGAGAGGGGTGTGGTCAA 60.476 55.000 0.00 0.00 0.00 3.18
216 217 0.909610 GATGGAGAGGGGTGTGGTCA 60.910 60.000 0.00 0.00 0.00 4.02
217 218 1.627297 GGATGGAGAGGGGTGTGGTC 61.627 65.000 0.00 0.00 0.00 4.02
218 219 1.616628 GGATGGAGAGGGGTGTGGT 60.617 63.158 0.00 0.00 0.00 4.16
219 220 1.307343 AGGATGGAGAGGGGTGTGG 60.307 63.158 0.00 0.00 0.00 4.17
220 221 0.326048 AGAGGATGGAGAGGGGTGTG 60.326 60.000 0.00 0.00 0.00 3.82
221 222 0.031616 GAGAGGATGGAGAGGGGTGT 60.032 60.000 0.00 0.00 0.00 4.16
222 223 0.762461 GGAGAGGATGGAGAGGGGTG 60.762 65.000 0.00 0.00 0.00 4.61
223 224 1.629297 GGAGAGGATGGAGAGGGGT 59.371 63.158 0.00 0.00 0.00 4.95
224 225 1.152139 GGGAGAGGATGGAGAGGGG 60.152 68.421 0.00 0.00 0.00 4.79
225 226 0.178935 GAGGGAGAGGATGGAGAGGG 60.179 65.000 0.00 0.00 0.00 4.30
226 227 0.178935 GGAGGGAGAGGATGGAGAGG 60.179 65.000 0.00 0.00 0.00 3.69
227 228 0.178935 GGGAGGGAGAGGATGGAGAG 60.179 65.000 0.00 0.00 0.00 3.20
228 229 1.669927 GGGGAGGGAGAGGATGGAGA 61.670 65.000 0.00 0.00 0.00 3.71
229 230 1.152139 GGGGAGGGAGAGGATGGAG 60.152 68.421 0.00 0.00 0.00 3.86
230 231 1.630333 AGGGGAGGGAGAGGATGGA 60.630 63.158 0.00 0.00 0.00 3.41
231 232 1.152139 GAGGGGAGGGAGAGGATGG 60.152 68.421 0.00 0.00 0.00 3.51
232 233 0.471591 CAGAGGGGAGGGAGAGGATG 60.472 65.000 0.00 0.00 0.00 3.51
233 234 1.945447 CAGAGGGGAGGGAGAGGAT 59.055 63.158 0.00 0.00 0.00 3.24
234 235 3.015332 GCAGAGGGGAGGGAGAGGA 62.015 68.421 0.00 0.00 0.00 3.71
235 236 2.445654 GCAGAGGGGAGGGAGAGG 60.446 72.222 0.00 0.00 0.00 3.69
236 237 1.002792 AAGCAGAGGGGAGGGAGAG 59.997 63.158 0.00 0.00 0.00 3.20
237 238 1.002274 GAAGCAGAGGGGAGGGAGA 59.998 63.158 0.00 0.00 0.00 3.71
238 239 2.430610 CGAAGCAGAGGGGAGGGAG 61.431 68.421 0.00 0.00 0.00 4.30
239 240 2.364317 CGAAGCAGAGGGGAGGGA 60.364 66.667 0.00 0.00 0.00 4.20
240 241 2.245438 GAACGAAGCAGAGGGGAGGG 62.245 65.000 0.00 0.00 0.00 4.30
241 242 1.219393 GAACGAAGCAGAGGGGAGG 59.781 63.158 0.00 0.00 0.00 4.30
242 243 0.108424 CAGAACGAAGCAGAGGGGAG 60.108 60.000 0.00 0.00 0.00 4.30
243 244 1.544825 CCAGAACGAAGCAGAGGGGA 61.545 60.000 0.00 0.00 0.00 4.81
244 245 1.078848 CCAGAACGAAGCAGAGGGG 60.079 63.158 0.00 0.00 0.00 4.79
245 246 0.390472 GACCAGAACGAAGCAGAGGG 60.390 60.000 0.00 0.00 0.00 4.30
246 247 0.390472 GGACCAGAACGAAGCAGAGG 60.390 60.000 0.00 0.00 0.00 3.69
247 248 0.390472 GGGACCAGAACGAAGCAGAG 60.390 60.000 0.00 0.00 0.00 3.35
248 249 1.671742 GGGACCAGAACGAAGCAGA 59.328 57.895 0.00 0.00 0.00 4.26
249 250 4.285851 GGGACCAGAACGAAGCAG 57.714 61.111 0.00 0.00 0.00 4.24
280 281 4.467084 ACATAGTGGCGCGGGGTG 62.467 66.667 8.83 0.00 0.00 4.61
281 282 4.157120 GACATAGTGGCGCGGGGT 62.157 66.667 8.83 0.00 0.00 4.95
282 283 4.910585 GGACATAGTGGCGCGGGG 62.911 72.222 8.83 0.00 0.00 5.73
283 284 4.155733 TGGACATAGTGGCGCGGG 62.156 66.667 8.83 0.00 0.00 6.13
284 285 2.586079 CTGGACATAGTGGCGCGG 60.586 66.667 8.83 0.00 0.00 6.46
285 286 3.264897 GCTGGACATAGTGGCGCG 61.265 66.667 0.00 0.00 0.00 6.86
286 287 1.884926 GAGCTGGACATAGTGGCGC 60.885 63.158 0.00 0.00 0.00 6.53
287 288 1.227380 GGAGCTGGACATAGTGGCG 60.227 63.158 0.00 0.00 0.00 5.69
288 289 0.253044 TTGGAGCTGGACATAGTGGC 59.747 55.000 0.00 0.00 0.00 5.01
289 290 1.833630 TCTTGGAGCTGGACATAGTGG 59.166 52.381 0.00 0.00 0.00 4.00
290 291 3.616956 TTCTTGGAGCTGGACATAGTG 57.383 47.619 0.00 0.00 0.00 2.74
291 292 4.384647 GGAATTCTTGGAGCTGGACATAGT 60.385 45.833 5.23 0.00 0.00 2.12
292 293 4.133078 GGAATTCTTGGAGCTGGACATAG 58.867 47.826 5.23 0.00 0.00 2.23
293 294 3.432186 CGGAATTCTTGGAGCTGGACATA 60.432 47.826 5.23 0.00 0.00 2.29
294 295 2.681976 CGGAATTCTTGGAGCTGGACAT 60.682 50.000 5.23 0.00 0.00 3.06
295 296 1.339055 CGGAATTCTTGGAGCTGGACA 60.339 52.381 5.23 0.00 0.00 4.02
296 297 1.339151 ACGGAATTCTTGGAGCTGGAC 60.339 52.381 5.23 0.00 0.00 4.02
297 298 0.984230 ACGGAATTCTTGGAGCTGGA 59.016 50.000 5.23 0.00 0.00 3.86
298 299 1.339055 TGACGGAATTCTTGGAGCTGG 60.339 52.381 5.23 0.00 0.00 4.85
299 300 2.099141 TGACGGAATTCTTGGAGCTG 57.901 50.000 5.23 0.00 0.00 4.24
300 301 2.859165 TTGACGGAATTCTTGGAGCT 57.141 45.000 5.23 0.00 0.00 4.09
301 302 3.915437 TTTTGACGGAATTCTTGGAGC 57.085 42.857 5.23 0.00 0.00 4.70
324 325 2.618709 CGTTCTTGGAGCTGGACTTTTT 59.381 45.455 0.00 0.00 0.00 1.94
325 326 2.222027 CGTTCTTGGAGCTGGACTTTT 58.778 47.619 0.00 0.00 0.00 2.27
326 327 1.543429 CCGTTCTTGGAGCTGGACTTT 60.543 52.381 0.00 0.00 0.00 2.66
327 328 0.035458 CCGTTCTTGGAGCTGGACTT 59.965 55.000 0.00 0.00 0.00 3.01
328 329 0.832135 TCCGTTCTTGGAGCTGGACT 60.832 55.000 0.00 0.00 33.05 3.85
329 330 0.250513 ATCCGTTCTTGGAGCTGGAC 59.749 55.000 0.00 0.00 42.45 4.02
330 331 0.537188 GATCCGTTCTTGGAGCTGGA 59.463 55.000 0.00 0.00 42.45 3.86
331 332 0.462759 GGATCCGTTCTTGGAGCTGG 60.463 60.000 0.00 0.00 43.94 4.85
332 333 0.807667 CGGATCCGTTCTTGGAGCTG 60.808 60.000 26.35 0.00 43.94 4.24
333 334 1.517832 CGGATCCGTTCTTGGAGCT 59.482 57.895 26.35 0.00 43.94 4.09
334 335 1.521681 CCGGATCCGTTCTTGGAGC 60.522 63.158 31.22 0.00 43.75 4.70
335 336 0.753262 ATCCGGATCCGTTCTTGGAG 59.247 55.000 31.22 14.29 42.45 3.86
336 337 1.200519 AATCCGGATCCGTTCTTGGA 58.799 50.000 31.22 20.40 43.58 3.53
337 338 2.038387 AAATCCGGATCCGTTCTTGG 57.962 50.000 31.22 15.75 37.81 3.61
338 339 3.131396 CCTAAATCCGGATCCGTTCTTG 58.869 50.000 31.22 16.48 37.81 3.02
339 340 2.484947 GCCTAAATCCGGATCCGTTCTT 60.485 50.000 31.22 21.58 37.81 2.52
340 341 1.070289 GCCTAAATCCGGATCCGTTCT 59.930 52.381 31.22 15.57 37.81 3.01
341 342 1.509703 GCCTAAATCCGGATCCGTTC 58.490 55.000 31.22 5.86 37.81 3.95
342 343 0.108019 GGCCTAAATCCGGATCCGTT 59.892 55.000 31.22 21.38 37.81 4.44
343 344 1.752833 GGCCTAAATCCGGATCCGT 59.247 57.895 31.22 16.31 37.81 4.69
344 345 1.003718 GGGCCTAAATCCGGATCCG 60.004 63.158 27.65 27.65 39.44 4.18
345 346 0.476771 TTGGGCCTAAATCCGGATCC 59.523 55.000 19.43 14.03 0.00 3.36
346 347 2.437413 GATTGGGCCTAAATCCGGATC 58.563 52.381 19.43 4.25 0.00 3.36
347 348 1.075536 GGATTGGGCCTAAATCCGGAT 59.924 52.381 25.44 12.38 42.68 4.18
348 349 0.476771 GGATTGGGCCTAAATCCGGA 59.523 55.000 25.44 6.61 42.68 5.14
349 350 3.036431 GGATTGGGCCTAAATCCGG 57.964 57.895 25.44 0.00 42.68 5.14
352 353 3.321968 GTCAATGGGATTGGGCCTAAATC 59.678 47.826 18.22 18.22 40.61 2.17
353 354 3.051880 AGTCAATGGGATTGGGCCTAAAT 60.052 43.478 5.31 4.62 40.61 1.40
354 355 2.314549 AGTCAATGGGATTGGGCCTAAA 59.685 45.455 5.31 0.00 40.61 1.85
355 356 1.929494 AGTCAATGGGATTGGGCCTAA 59.071 47.619 3.11 3.11 40.61 2.69
356 357 1.215173 CAGTCAATGGGATTGGGCCTA 59.785 52.381 4.53 0.00 40.61 3.93
357 358 0.032813 CAGTCAATGGGATTGGGCCT 60.033 55.000 4.53 0.00 40.61 5.19
358 359 1.044790 CCAGTCAATGGGATTGGGCC 61.045 60.000 0.00 0.00 46.69 5.80
359 360 2.508361 CCAGTCAATGGGATTGGGC 58.492 57.895 0.00 0.00 46.69 5.36
372 373 0.674895 GCCATGAGTGTGTCCCAGTC 60.675 60.000 0.00 0.00 42.84 3.51
373 374 1.376466 GCCATGAGTGTGTCCCAGT 59.624 57.895 0.00 0.00 0.00 4.00
374 375 1.742880 CGCCATGAGTGTGTCCCAG 60.743 63.158 0.00 0.00 0.00 4.45
375 376 2.347114 CGCCATGAGTGTGTCCCA 59.653 61.111 0.00 0.00 0.00 4.37
376 377 2.257409 ATCCGCCATGAGTGTGTCCC 62.257 60.000 0.00 0.00 0.00 4.46
377 378 0.392998 AATCCGCCATGAGTGTGTCC 60.393 55.000 0.00 0.00 0.00 4.02
378 379 1.009829 GAATCCGCCATGAGTGTGTC 58.990 55.000 0.00 0.00 0.00 3.67
379 380 0.740868 CGAATCCGCCATGAGTGTGT 60.741 55.000 0.00 0.00 0.00 3.72
380 381 0.460109 TCGAATCCGCCATGAGTGTG 60.460 55.000 0.00 0.00 35.37 3.82
381 382 0.179100 CTCGAATCCGCCATGAGTGT 60.179 55.000 0.00 0.00 35.37 3.55
382 383 1.493950 GCTCGAATCCGCCATGAGTG 61.494 60.000 0.00 0.00 35.37 3.51
383 384 1.227380 GCTCGAATCCGCCATGAGT 60.227 57.895 0.00 0.00 35.37 3.41
384 385 0.943359 GAGCTCGAATCCGCCATGAG 60.943 60.000 0.00 0.00 35.37 2.90
385 386 1.068083 GAGCTCGAATCCGCCATGA 59.932 57.895 0.00 0.00 35.37 3.07
386 387 1.958205 GGAGCTCGAATCCGCCATG 60.958 63.158 7.83 0.00 35.37 3.66
387 388 2.423446 GGAGCTCGAATCCGCCAT 59.577 61.111 7.83 0.00 35.37 4.40
388 389 3.074369 TGGAGCTCGAATCCGCCA 61.074 61.111 7.83 5.53 39.91 5.69
389 390 2.586357 GTGGAGCTCGAATCCGCC 60.586 66.667 15.75 6.05 40.74 6.13
390 391 2.956964 CGTGGAGCTCGAATCCGC 60.957 66.667 16.38 16.38 42.73 5.54
391 392 2.956964 GCGTGGAGCTCGAATCCG 60.957 66.667 7.83 5.24 44.04 4.18
401 402 0.321564 TCTTGTTGGATGGCGTGGAG 60.322 55.000 0.00 0.00 0.00 3.86
402 403 0.109532 TTCTTGTTGGATGGCGTGGA 59.890 50.000 0.00 0.00 0.00 4.02
403 404 0.523072 CTTCTTGTTGGATGGCGTGG 59.477 55.000 0.00 0.00 0.00 4.94
404 405 0.109597 GCTTCTTGTTGGATGGCGTG 60.110 55.000 0.00 0.00 0.00 5.34
405 406 0.250901 AGCTTCTTGTTGGATGGCGT 60.251 50.000 0.00 0.00 0.00 5.68
406 407 0.449388 GAGCTTCTTGTTGGATGGCG 59.551 55.000 0.00 0.00 0.00 5.69
407 408 1.200948 GTGAGCTTCTTGTTGGATGGC 59.799 52.381 0.00 0.00 0.00 4.40
408 409 1.815003 GGTGAGCTTCTTGTTGGATGG 59.185 52.381 0.00 0.00 0.00 3.51
409 410 1.815003 GGGTGAGCTTCTTGTTGGATG 59.185 52.381 0.00 0.00 0.00 3.51
410 411 1.272147 GGGGTGAGCTTCTTGTTGGAT 60.272 52.381 0.00 0.00 0.00 3.41
411 412 0.110486 GGGGTGAGCTTCTTGTTGGA 59.890 55.000 0.00 0.00 0.00 3.53
412 413 0.895559 GGGGGTGAGCTTCTTGTTGG 60.896 60.000 0.00 0.00 0.00 3.77
413 414 2.646121 GGGGGTGAGCTTCTTGTTG 58.354 57.895 0.00 0.00 0.00 3.33
428 429 3.712907 ATCCACAACCGACGGGGG 61.713 66.667 20.00 13.72 41.60 5.40
429 430 2.435938 CATCCACAACCGACGGGG 60.436 66.667 20.00 12.52 43.62 5.73
430 431 1.004320 TTCATCCACAACCGACGGG 60.004 57.895 20.00 3.43 40.11 5.28
431 432 0.601576 TGTTCATCCACAACCGACGG 60.602 55.000 13.61 13.61 0.00 4.79
432 433 1.194547 CTTGTTCATCCACAACCGACG 59.805 52.381 0.00 0.00 33.04 5.12
433 434 1.535462 CCTTGTTCATCCACAACCGAC 59.465 52.381 0.00 0.00 33.04 4.79
434 435 1.418264 TCCTTGTTCATCCACAACCGA 59.582 47.619 0.00 0.00 33.04 4.69
435 436 1.535462 GTCCTTGTTCATCCACAACCG 59.465 52.381 0.00 0.00 33.04 4.44
436 437 2.554032 CTGTCCTTGTTCATCCACAACC 59.446 50.000 0.00 0.00 33.04 3.77
437 438 3.476552 TCTGTCCTTGTTCATCCACAAC 58.523 45.455 0.00 0.00 33.04 3.32
438 439 3.855255 TCTGTCCTTGTTCATCCACAA 57.145 42.857 0.00 0.00 35.33 3.33
439 440 3.584406 AGATCTGTCCTTGTTCATCCACA 59.416 43.478 0.00 0.00 0.00 4.17
440 441 4.213564 AGATCTGTCCTTGTTCATCCAC 57.786 45.455 0.00 0.00 0.00 4.02
441 442 4.916041 AAGATCTGTCCTTGTTCATCCA 57.084 40.909 0.00 0.00 0.00 3.41
442 443 5.248640 TCAAAGATCTGTCCTTGTTCATCC 58.751 41.667 0.00 0.00 29.70 3.51
443 444 5.163774 GCTCAAAGATCTGTCCTTGTTCATC 60.164 44.000 0.00 0.00 29.70 2.92
444 445 4.699257 GCTCAAAGATCTGTCCTTGTTCAT 59.301 41.667 0.00 0.00 29.70 2.57
445 446 4.067896 GCTCAAAGATCTGTCCTTGTTCA 58.932 43.478 0.00 0.00 29.70 3.18
446 447 4.322567 AGCTCAAAGATCTGTCCTTGTTC 58.677 43.478 0.00 0.00 29.70 3.18
447 448 4.322567 GAGCTCAAAGATCTGTCCTTGTT 58.677 43.478 9.40 0.00 29.70 2.83
448 449 3.616076 CGAGCTCAAAGATCTGTCCTTGT 60.616 47.826 15.40 0.00 29.70 3.16
449 450 2.928757 CGAGCTCAAAGATCTGTCCTTG 59.071 50.000 15.40 0.00 0.00 3.61
450 451 2.093764 CCGAGCTCAAAGATCTGTCCTT 60.094 50.000 15.40 0.00 0.00 3.36
451 452 1.480137 CCGAGCTCAAAGATCTGTCCT 59.520 52.381 15.40 0.00 0.00 3.85
452 453 1.933247 CCGAGCTCAAAGATCTGTCC 58.067 55.000 15.40 0.00 0.00 4.02
453 454 1.285578 GCCGAGCTCAAAGATCTGTC 58.714 55.000 15.40 0.00 0.00 3.51
454 455 0.459237 CGCCGAGCTCAAAGATCTGT 60.459 55.000 15.40 0.00 0.00 3.41
455 456 1.150567 CCGCCGAGCTCAAAGATCTG 61.151 60.000 15.40 0.00 0.00 2.90
456 457 1.142748 CCGCCGAGCTCAAAGATCT 59.857 57.895 15.40 0.00 0.00 2.75
457 458 2.529619 GCCGCCGAGCTCAAAGATC 61.530 63.158 15.40 0.00 0.00 2.75
458 459 2.512515 GCCGCCGAGCTCAAAGAT 60.513 61.111 15.40 0.00 0.00 2.40
459 460 4.760047 GGCCGCCGAGCTCAAAGA 62.760 66.667 15.40 0.00 0.00 2.52
460 461 4.767255 AGGCCGCCGAGCTCAAAG 62.767 66.667 15.40 2.59 0.00 2.77
483 484 4.626081 ACCACGGCTGCACTCACC 62.626 66.667 0.50 0.00 0.00 4.02
484 485 1.724582 AAAACCACGGCTGCACTCAC 61.725 55.000 0.50 0.00 0.00 3.51
485 486 1.453015 AAAACCACGGCTGCACTCA 60.453 52.632 0.50 0.00 0.00 3.41
486 487 1.008538 CAAAACCACGGCTGCACTC 60.009 57.895 0.50 0.00 0.00 3.51
487 488 1.319614 AACAAAACCACGGCTGCACT 61.320 50.000 0.50 0.00 0.00 4.40
488 489 1.140804 AACAAAACCACGGCTGCAC 59.859 52.632 0.50 0.00 0.00 4.57
489 490 1.140589 CAACAAAACCACGGCTGCA 59.859 52.632 0.50 0.00 0.00 4.41
490 491 0.594796 CTCAACAAAACCACGGCTGC 60.595 55.000 0.00 0.00 0.00 5.25
491 492 0.030638 CCTCAACAAAACCACGGCTG 59.969 55.000 0.00 0.00 0.00 4.85
492 493 0.395173 ACCTCAACAAAACCACGGCT 60.395 50.000 0.00 0.00 0.00 5.52
493 494 0.458260 AACCTCAACAAAACCACGGC 59.542 50.000 0.00 0.00 0.00 5.68
494 495 2.094442 ACAAACCTCAACAAAACCACGG 60.094 45.455 0.00 0.00 0.00 4.94
495 496 2.920490 CACAAACCTCAACAAAACCACG 59.080 45.455 0.00 0.00 0.00 4.94
496 497 3.920446 ACACAAACCTCAACAAAACCAC 58.080 40.909 0.00 0.00 0.00 4.16
497 498 3.366476 CGACACAAACCTCAACAAAACCA 60.366 43.478 0.00 0.00 0.00 3.67
498 499 3.175929 CGACACAAACCTCAACAAAACC 58.824 45.455 0.00 0.00 0.00 3.27
499 500 3.828786 ACGACACAAACCTCAACAAAAC 58.171 40.909 0.00 0.00 0.00 2.43
566 568 4.436998 CGTCCGGGAGTGCAGGTC 62.437 72.222 0.00 0.00 0.00 3.85
570 572 4.451150 GCATCGTCCGGGAGTGCA 62.451 66.667 18.72 0.00 35.93 4.57
587 589 0.388649 GACGTGACACTAGCACCCAG 60.389 60.000 3.68 0.00 32.74 4.45
600 602 1.191535 CATGGGTTAGGAGGACGTGA 58.808 55.000 0.00 0.00 0.00 4.35
617 619 2.839486 TGAACTTCAGAAGCCGTCAT 57.161 45.000 10.33 0.00 0.00 3.06
630 632 0.955919 GCTACCTGCGCCTTGAACTT 60.956 55.000 4.18 0.00 0.00 2.66
642 644 3.188786 GGCGCGACAAGCTACCTG 61.189 66.667 12.10 0.00 45.59 4.00
643 645 3.649277 CTGGCGCGACAAGCTACCT 62.649 63.158 19.01 0.00 45.59 3.08
644 646 3.188786 CTGGCGCGACAAGCTACC 61.189 66.667 19.01 1.32 45.59 3.18
672 674 4.547367 GGATCCGGCCTTGGTCCG 62.547 72.222 0.00 13.06 46.05 4.79
673 675 2.284515 ATTGGATCCGGCCTTGGTCC 62.285 60.000 13.24 13.24 32.83 4.46
684 686 1.542108 CCAGAGCGGAAGATTGGATCC 60.542 57.143 4.20 4.20 36.56 3.36
692 694 3.760035 GGCGACCAGAGCGGAAGA 61.760 66.667 0.00 0.00 38.63 2.87
706 708 4.676951 TCAAAGGGCAAGGGGGCG 62.677 66.667 0.00 0.00 44.56 6.13
708 710 1.304464 GAGTCAAAGGGCAAGGGGG 60.304 63.158 0.00 0.00 0.00 5.40
709 711 1.304464 GGAGTCAAAGGGCAAGGGG 60.304 63.158 0.00 0.00 0.00 4.79
711 713 0.955919 GTCGGAGTCAAAGGGCAAGG 60.956 60.000 0.00 0.00 0.00 3.61
716 718 1.374252 CCACGTCGGAGTCAAAGGG 60.374 63.158 0.00 0.00 36.56 3.95
741 743 1.555075 GAGGCAGGACAACATGGACTA 59.445 52.381 0.00 0.00 0.00 2.59
755 757 4.803426 GACCGACGCAGGAGGCAG 62.803 72.222 3.59 0.00 45.17 4.85
770 772 1.267806 CTTGTGGCAGTGGTCAATGAC 59.732 52.381 4.51 4.51 34.49 3.06
771 773 1.142667 TCTTGTGGCAGTGGTCAATGA 59.857 47.619 2.41 0.00 0.00 2.57
773 775 1.956477 GTTCTTGTGGCAGTGGTCAAT 59.044 47.619 0.00 0.00 0.00 2.57
780 782 1.299541 CTTCACGTTCTTGTGGCAGT 58.700 50.000 0.00 0.00 40.31 4.40
786 788 1.001378 GCAATGCCTTCACGTTCTTGT 60.001 47.619 0.00 0.00 0.00 3.16
793 795 0.521867 CATGTCGCAATGCCTTCACG 60.522 55.000 0.00 0.00 0.00 4.35
796 798 1.226773 GCCATGTCGCAATGCCTTC 60.227 57.895 0.00 0.00 0.00 3.46
800 802 1.656263 CGATGCCATGTCGCAATGC 60.656 57.895 0.58 0.00 43.24 3.56
801 803 0.041576 CTCGATGCCATGTCGCAATG 60.042 55.000 0.58 0.00 43.24 2.82
809 811 2.969238 GGACGCCTCGATGCCATG 60.969 66.667 7.12 0.00 0.00 3.66
811 813 2.535485 ATTTGGACGCCTCGATGCCA 62.535 55.000 7.12 0.00 0.00 4.92
813 815 1.353103 CATTTGGACGCCTCGATGC 59.647 57.895 2.16 2.16 0.00 3.91
819 821 1.684869 CCATAACCCATTTGGACGCCT 60.685 52.381 0.00 0.00 37.39 5.52
821 823 0.102300 GCCATAACCCATTTGGACGC 59.898 55.000 0.00 0.00 37.39 5.19
826 828 2.101783 TGCTCAGCCATAACCCATTTG 58.898 47.619 0.00 0.00 0.00 2.32
827 829 2.530460 TGCTCAGCCATAACCCATTT 57.470 45.000 0.00 0.00 0.00 2.32
833 835 1.394917 CGTCACTTGCTCAGCCATAAC 59.605 52.381 0.00 0.00 0.00 1.89
835 837 0.740868 GCGTCACTTGCTCAGCCATA 60.741 55.000 0.00 0.00 0.00 2.74
881 883 3.909258 TTGTCGCCTCTTCGTCGGC 62.909 63.158 0.00 0.00 42.86 5.54
1229 1319 3.190738 TTCCAGGGGAAGGCGTGTG 62.191 63.158 0.00 0.00 36.71 3.82
1230 1320 2.852075 TTCCAGGGGAAGGCGTGT 60.852 61.111 0.00 0.00 36.71 4.49
1404 1508 0.325671 GATCCAGACCCCTCCTCACA 60.326 60.000 0.00 0.00 0.00 3.58
1485 1590 2.589157 ATCGAACACCTTCCGCCCA 61.589 57.895 0.00 0.00 0.00 5.36
1493 1598 2.126071 CGCCGTCATCGAACACCT 60.126 61.111 0.00 0.00 39.71 4.00
1515 1620 1.000496 GAGTTCCACGAAACGAGGTCT 60.000 52.381 7.38 7.37 38.64 3.85
1686 1791 1.139654 TCCCTCTCAGGCATTTGATCG 59.860 52.381 0.00 0.00 32.73 3.69
1737 1842 0.471971 TCCTCCCCTGCCTAGCATAC 60.472 60.000 0.00 0.00 38.13 2.39
1783 1888 2.169978 TCACATTCCTCTCAGGCATCTG 59.830 50.000 0.00 0.00 42.21 2.90
2176 2281 1.089920 CCTTCAGACTCCATTTGGCG 58.910 55.000 0.00 0.00 34.44 5.69
2383 2490 2.158564 CCATGGGCATTGTCTCTATGGT 60.159 50.000 2.85 0.00 31.33 3.55
2547 2654 1.019673 CCCACATTCCTTCATCAGCG 58.980 55.000 0.00 0.00 0.00 5.18
2613 2720 3.138283 TCACACTCCTTCCAATGTCCTTT 59.862 43.478 0.00 0.00 0.00 3.11
2780 2887 2.371841 ACTAACAGGCATCACACCAAGA 59.628 45.455 0.00 0.00 0.00 3.02
2833 2941 1.210538 TCAAGAGCTCCATCCAGCAT 58.789 50.000 10.93 0.00 42.40 3.79
2867 2975 1.270826 GCAGCTTCAGAAAGAAACCCC 59.729 52.381 0.00 0.00 35.40 4.95
2918 3026 8.872845 GGCAATTATGTTTTGTTTTATCTGGAG 58.127 33.333 0.00 0.00 0.00 3.86
3303 3419 6.997239 AGGTTGAAATTAATTACCTCCGTC 57.003 37.500 13.28 2.08 34.15 4.79
3387 3503 4.663334 ACTGGCTAAAAGAAGGGGTAAAG 58.337 43.478 0.00 0.00 0.00 1.85
3402 3518 4.919774 TCTTACCCATTCAAACTGGCTA 57.080 40.909 0.00 0.00 32.08 3.93
3457 3573 9.797556 GGTTAAGCCTGAAATCGTTATTAAAAT 57.202 29.630 0.00 0.00 0.00 1.82
3499 3615 6.479001 TCAACAGAGGTTCGAAGTCTTTTTAG 59.521 38.462 0.00 0.00 34.21 1.85
3598 3714 4.154015 CGACATTGACAATTGGACTTGCTA 59.846 41.667 10.83 0.00 0.00 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.