Multiple sequence alignment - TraesCS3D01G415100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G415100 chr3D 100.000 3598 0 0 1 3598 526994438 526998035 0.000000e+00 6645.0
1 TraesCS3D01G415100 chr3D 81.191 638 105 13 1931 2564 481928665 481929291 1.930000e-137 499.0
2 TraesCS3D01G415100 chr3B 91.016 1870 124 25 1751 3598 696673556 696675403 0.000000e+00 2483.0
3 TraesCS3D01G415100 chr3B 93.020 745 32 7 710 1454 696672633 696673357 0.000000e+00 1070.0
4 TraesCS3D01G415100 chr3B 88.926 298 32 1 221 517 696672164 696672461 2.040000e-97 366.0
5 TraesCS3D01G415100 chr3B 98.291 117 2 0 1575 1691 696673430 696673546 4.710000e-49 206.0
6 TraesCS3D01G415100 chr3B 75.974 308 58 14 2785 3086 795286152 795285855 1.040000e-30 145.0
7 TraesCS3D01G415100 chr3B 98.039 51 1 0 660 710 696672557 696672607 4.950000e-14 89.8
8 TraesCS3D01G415100 chr5B 83.043 690 97 14 1881 2563 589236897 589236221 3.070000e-170 608.0
9 TraesCS3D01G415100 chr5D 83.577 615 95 5 1904 2518 332073447 332072839 4.030000e-159 571.0
10 TraesCS3D01G415100 chr5D 81.115 646 109 12 1904 2545 443002008 443002644 4.150000e-139 505.0
11 TraesCS3D01G415100 chr1B 82.202 663 110 6 1905 2564 600968582 600969239 6.740000e-157 564.0
12 TraesCS3D01G415100 chr1B 87.342 316 20 4 208 517 570459026 570458725 9.560000e-91 344.0
13 TraesCS3D01G415100 chr1B 83.193 238 15 12 611 830 570456322 570456092 1.020000e-45 195.0
14 TraesCS3D01G415100 chr3A 82.029 690 70 33 643 1303 661586274 661586938 4.090000e-149 538.0
15 TraesCS3D01G415100 chr3A 79.941 683 125 6 1883 2564 22191385 22192056 3.230000e-135 492.0
16 TraesCS3D01G415100 chr3A 90.323 310 27 3 209 517 661585878 661586185 1.560000e-108 403.0
17 TraesCS3D01G415100 chr3A 88.514 148 14 2 2562 2709 661596289 661596433 3.690000e-40 176.0
18 TraesCS3D01G415100 chr3A 89.655 87 7 2 35 120 729484071 729484156 3.800000e-20 110.0
19 TraesCS3D01G415100 chr3A 85.393 89 10 2 20 106 77889773 77889686 4.950000e-14 89.8
20 TraesCS3D01G415100 chr7D 81.297 663 116 5 1905 2564 205145425 205146082 6.840000e-147 531.0
21 TraesCS3D01G415100 chr7D 87.500 88 9 2 31 117 117686675 117686589 2.290000e-17 100.0
22 TraesCS3D01G415100 chr7D 98.039 51 0 1 559 609 382084687 382084638 1.780000e-13 87.9
23 TraesCS3D01G415100 chr6D 80.273 659 108 18 1917 2568 348044370 348045013 9.040000e-131 477.0
24 TraesCS3D01G415100 chrUn 78.154 325 44 15 2791 3092 112606569 112606889 7.940000e-42 182.0
25 TraesCS3D01G415100 chrUn 98.039 51 0 1 559 609 171003169 171003120 1.780000e-13 87.9
26 TraesCS3D01G415100 chrUn 98.039 51 0 1 559 609 338555933 338555884 1.780000e-13 87.9
27 TraesCS3D01G415100 chr4B 78.166 229 39 9 2867 3086 417542644 417542418 6.270000e-28 135.0
28 TraesCS3D01G415100 chr2D 76.408 284 47 14 2800 3078 608444976 608444708 6.270000e-28 135.0
29 TraesCS3D01G415100 chr2D 83.688 141 22 1 2569 2709 71396125 71396264 8.110000e-27 132.0
30 TraesCS3D01G415100 chr7B 86.087 115 16 0 46 160 693389375 693389261 1.360000e-24 124.0
31 TraesCS3D01G415100 chr4A 74.760 313 51 21 2786 3089 681175475 681175768 8.160000e-22 115.0
32 TraesCS3D01G415100 chr4A 75.781 128 21 8 2966 3086 666125287 666125411 5.020000e-04 56.5
33 TraesCS3D01G415100 chr1D 82.171 129 16 5 2962 3085 314736206 314736332 1.770000e-18 104.0
34 TraesCS3D01G415100 chr1D 98.039 51 0 1 559 609 212450684 212450733 1.780000e-13 87.9
35 TraesCS3D01G415100 chr6B 76.757 185 31 8 2915 3089 471005616 471005798 3.820000e-15 93.5
36 TraesCS3D01G415100 chr6B 98.039 51 0 1 559 609 394420153 394420202 1.780000e-13 87.9
37 TraesCS3D01G415100 chr6B 98.039 51 0 1 559 609 715996452 715996501 1.780000e-13 87.9
38 TraesCS3D01G415100 chr4D 98.039 51 0 1 559 609 241110703 241110654 1.780000e-13 87.9
39 TraesCS3D01G415100 chr4D 93.103 58 2 2 559 616 134957900 134957845 2.300000e-12 84.2
40 TraesCS3D01G415100 chr1A 98.039 51 0 1 559 609 94669047 94669096 1.780000e-13 87.9
41 TraesCS3D01G415100 chr2A 78.431 153 18 11 2830 2977 564611706 564611564 6.400000e-13 86.1
42 TraesCS3D01G415100 chr5A 74.706 170 37 6 2918 3086 341099977 341099813 1.790000e-08 71.3
43 TraesCS3D01G415100 chr6A 80.769 78 10 5 20 95 564731643 564731717 5.020000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G415100 chr3D 526994438 526998035 3597 False 6645.00 6645 100.0000 1 3598 1 chr3D.!!$F2 3597
1 TraesCS3D01G415100 chr3D 481928665 481929291 626 False 499.00 499 81.1910 1931 2564 1 chr3D.!!$F1 633
2 TraesCS3D01G415100 chr3B 696672164 696675403 3239 False 842.96 2483 93.8584 221 3598 5 chr3B.!!$F1 3377
3 TraesCS3D01G415100 chr5B 589236221 589236897 676 True 608.00 608 83.0430 1881 2563 1 chr5B.!!$R1 682
4 TraesCS3D01G415100 chr5D 332072839 332073447 608 True 571.00 571 83.5770 1904 2518 1 chr5D.!!$R1 614
5 TraesCS3D01G415100 chr5D 443002008 443002644 636 False 505.00 505 81.1150 1904 2545 1 chr5D.!!$F1 641
6 TraesCS3D01G415100 chr1B 600968582 600969239 657 False 564.00 564 82.2020 1905 2564 1 chr1B.!!$F1 659
7 TraesCS3D01G415100 chr1B 570456092 570459026 2934 True 269.50 344 85.2675 208 830 2 chr1B.!!$R1 622
8 TraesCS3D01G415100 chr3A 22191385 22192056 671 False 492.00 492 79.9410 1883 2564 1 chr3A.!!$F1 681
9 TraesCS3D01G415100 chr3A 661585878 661586938 1060 False 470.50 538 86.1760 209 1303 2 chr3A.!!$F4 1094
10 TraesCS3D01G415100 chr7D 205145425 205146082 657 False 531.00 531 81.2970 1905 2564 1 chr7D.!!$F1 659
11 TraesCS3D01G415100 chr6D 348044370 348045013 643 False 477.00 477 80.2730 1917 2568 1 chr6D.!!$F1 651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
523 531 0.033208 CCTTGCCCTGGCCAGAAATA 60.033 55.0 34.91 14.19 41.09 1.40 F
567 2922 0.036732 CACTGGGAGTGGCAGCTTAA 59.963 55.0 0.00 0.00 42.35 1.85 F
1732 4145 0.040157 GCTGTACCGTACGTGTGTGA 60.040 55.0 15.21 0.00 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2210 4629 0.037605 CCGAAGACAAACGCCTACCT 60.038 55.0 0.00 0.0 0.00 3.08 R
2348 4768 0.613260 AAGTCATCGTGCTAAGGCCA 59.387 50.0 5.01 0.0 37.74 5.36 R
3219 5662 0.035056 AGGAGAATGGTGAAAGCCGG 60.035 55.0 0.00 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.443045 GGCCAAGCCGATGTGGTG 61.443 66.667 0.00 0.00 39.62 4.17
30 31 3.443045 GCCAAGCCGATGTGGTGG 61.443 66.667 0.00 0.00 41.21 4.61
31 32 2.751436 CCAAGCCGATGTGGTGGG 60.751 66.667 0.00 0.00 41.21 4.61
53 54 4.394712 CCCGGAGCGCCCATATCC 62.395 72.222 0.73 2.49 34.14 2.59
59 60 2.345991 GCGCCCATATCCGCCTAA 59.654 61.111 0.00 0.00 44.10 2.69
60 61 1.078426 GCGCCCATATCCGCCTAAT 60.078 57.895 0.00 0.00 44.10 1.73
61 62 0.177141 GCGCCCATATCCGCCTAATA 59.823 55.000 0.00 0.00 44.10 0.98
62 63 1.202651 GCGCCCATATCCGCCTAATAT 60.203 52.381 0.00 0.00 44.10 1.28
63 64 2.745152 GCGCCCATATCCGCCTAATATT 60.745 50.000 0.00 0.00 44.10 1.28
64 65 3.541632 CGCCCATATCCGCCTAATATTT 58.458 45.455 0.00 0.00 0.00 1.40
65 66 4.699637 CGCCCATATCCGCCTAATATTTA 58.300 43.478 0.00 0.00 0.00 1.40
66 67 4.750098 CGCCCATATCCGCCTAATATTTAG 59.250 45.833 0.00 0.00 0.00 1.85
67 68 5.063880 GCCCATATCCGCCTAATATTTAGG 58.936 45.833 8.64 8.64 37.75 2.69
80 81 7.512992 CCTAATATTTAGGCTGGATATGAGGG 58.487 42.308 18.82 11.69 33.41 4.30
81 82 6.977244 AATATTTAGGCTGGATATGAGGGT 57.023 37.500 0.00 0.00 0.00 4.34
82 83 6.977244 ATATTTAGGCTGGATATGAGGGTT 57.023 37.500 0.00 0.00 0.00 4.11
83 84 4.437682 TTTAGGCTGGATATGAGGGTTG 57.562 45.455 0.00 0.00 0.00 3.77
84 85 0.475906 AGGCTGGATATGAGGGTTGC 59.524 55.000 0.00 0.00 0.00 4.17
85 86 0.538287 GGCTGGATATGAGGGTTGCC 60.538 60.000 0.00 0.00 0.00 4.52
86 87 0.886490 GCTGGATATGAGGGTTGCCG 60.886 60.000 0.00 0.00 0.00 5.69
87 88 0.250467 CTGGATATGAGGGTTGCCGG 60.250 60.000 0.00 0.00 0.00 6.13
88 89 0.986019 TGGATATGAGGGTTGCCGGT 60.986 55.000 1.90 0.00 0.00 5.28
89 90 0.250338 GGATATGAGGGTTGCCGGTC 60.250 60.000 1.90 0.00 0.00 4.79
90 91 0.468226 GATATGAGGGTTGCCGGTCA 59.532 55.000 1.90 0.00 0.00 4.02
91 92 0.469917 ATATGAGGGTTGCCGGTCAG 59.530 55.000 1.90 0.00 0.00 3.51
92 93 0.907704 TATGAGGGTTGCCGGTCAGT 60.908 55.000 1.90 0.00 0.00 3.41
93 94 2.047179 GAGGGTTGCCGGTCAGTC 60.047 66.667 1.90 0.00 0.00 3.51
94 95 3.607370 GAGGGTTGCCGGTCAGTCC 62.607 68.421 1.90 8.23 0.00 3.85
95 96 3.948719 GGGTTGCCGGTCAGTCCA 61.949 66.667 1.90 0.00 35.57 4.02
96 97 2.112297 GGTTGCCGGTCAGTCCAA 59.888 61.111 1.90 0.00 35.57 3.53
97 98 1.966451 GGTTGCCGGTCAGTCCAAG 60.966 63.158 1.90 0.00 35.57 3.61
98 99 2.281484 TTGCCGGTCAGTCCAAGC 60.281 61.111 1.90 0.00 36.16 4.01
99 100 4.680237 TGCCGGTCAGTCCAAGCG 62.680 66.667 1.90 0.00 37.78 4.68
100 101 4.681978 GCCGGTCAGTCCAAGCGT 62.682 66.667 1.90 0.00 35.96 5.07
101 102 2.030562 CCGGTCAGTCCAAGCGTT 59.969 61.111 0.00 0.00 35.96 4.84
102 103 1.597027 CCGGTCAGTCCAAGCGTTT 60.597 57.895 0.00 0.00 35.96 3.60
103 104 1.569493 CGGTCAGTCCAAGCGTTTG 59.431 57.895 4.84 4.84 35.57 2.93
104 105 0.878523 CGGTCAGTCCAAGCGTTTGA 60.879 55.000 14.10 0.00 36.36 2.69
105 106 0.868406 GGTCAGTCCAAGCGTTTGAG 59.132 55.000 14.10 3.98 36.36 3.02
106 107 1.540363 GGTCAGTCCAAGCGTTTGAGA 60.540 52.381 14.10 6.34 36.36 3.27
107 108 1.527311 GTCAGTCCAAGCGTTTGAGAC 59.473 52.381 14.10 17.05 36.36 3.36
108 109 0.868406 CAGTCCAAGCGTTTGAGACC 59.132 55.000 21.14 10.20 36.22 3.85
109 110 0.250338 AGTCCAAGCGTTTGAGACCC 60.250 55.000 21.14 6.53 36.22 4.46
110 111 1.301401 TCCAAGCGTTTGAGACCCG 60.301 57.895 14.10 0.00 36.36 5.28
111 112 1.597027 CCAAGCGTTTGAGACCCGT 60.597 57.895 14.10 0.00 36.36 5.28
112 113 1.164041 CCAAGCGTTTGAGACCCGTT 61.164 55.000 14.10 0.00 36.36 4.44
113 114 0.661020 CAAGCGTTTGAGACCCGTTT 59.339 50.000 6.06 0.00 36.36 3.60
114 115 0.661020 AAGCGTTTGAGACCCGTTTG 59.339 50.000 0.00 0.00 0.00 2.93
115 116 0.179067 AGCGTTTGAGACCCGTTTGA 60.179 50.000 0.00 0.00 0.00 2.69
116 117 0.234884 GCGTTTGAGACCCGTTTGAG 59.765 55.000 0.00 0.00 0.00 3.02
117 118 0.865769 CGTTTGAGACCCGTTTGAGG 59.134 55.000 0.00 0.00 0.00 3.86
118 119 1.808891 CGTTTGAGACCCGTTTGAGGT 60.809 52.381 0.00 0.00 41.50 3.85
119 120 1.602377 GTTTGAGACCCGTTTGAGGTG 59.398 52.381 0.00 0.00 37.88 4.00
120 121 1.124780 TTGAGACCCGTTTGAGGTGA 58.875 50.000 0.00 0.00 37.88 4.02
121 122 1.348064 TGAGACCCGTTTGAGGTGAT 58.652 50.000 0.00 0.00 37.88 3.06
122 123 1.275291 TGAGACCCGTTTGAGGTGATC 59.725 52.381 0.00 0.00 37.88 2.92
123 124 0.246635 AGACCCGTTTGAGGTGATCG 59.753 55.000 0.00 0.00 37.88 3.69
124 125 0.739813 GACCCGTTTGAGGTGATCGG 60.740 60.000 0.00 0.00 37.88 4.18
125 126 1.189524 ACCCGTTTGAGGTGATCGGA 61.190 55.000 3.45 0.00 43.22 4.55
126 127 0.178068 CCCGTTTGAGGTGATCGGAT 59.822 55.000 3.45 0.00 43.22 4.18
127 128 1.406887 CCCGTTTGAGGTGATCGGATT 60.407 52.381 3.45 0.00 43.22 3.01
128 129 1.665679 CCGTTTGAGGTGATCGGATTG 59.334 52.381 0.00 0.00 43.22 2.67
129 130 1.665679 CGTTTGAGGTGATCGGATTGG 59.334 52.381 0.00 0.00 0.00 3.16
130 131 2.711542 GTTTGAGGTGATCGGATTGGT 58.288 47.619 0.00 0.00 0.00 3.67
131 132 2.678336 GTTTGAGGTGATCGGATTGGTC 59.322 50.000 0.00 0.00 0.00 4.02
132 133 0.459899 TGAGGTGATCGGATTGGTCG 59.540 55.000 0.00 0.00 0.00 4.79
133 134 0.744874 GAGGTGATCGGATTGGTCGA 59.255 55.000 0.00 0.00 41.04 4.20
134 135 0.747255 AGGTGATCGGATTGGTCGAG 59.253 55.000 0.00 0.00 40.09 4.04
135 136 0.460311 GGTGATCGGATTGGTCGAGT 59.540 55.000 0.00 0.00 40.09 4.18
136 137 1.134788 GGTGATCGGATTGGTCGAGTT 60.135 52.381 0.00 0.00 40.09 3.01
137 138 2.618053 GTGATCGGATTGGTCGAGTTT 58.382 47.619 0.00 0.00 40.09 2.66
138 139 3.000727 GTGATCGGATTGGTCGAGTTTT 58.999 45.455 0.00 0.00 40.09 2.43
139 140 3.062234 GTGATCGGATTGGTCGAGTTTTC 59.938 47.826 0.00 0.00 40.09 2.29
141 142 1.000060 TCGGATTGGTCGAGTTTTCGT 60.000 47.619 0.00 0.00 46.72 3.85
142 143 1.126113 CGGATTGGTCGAGTTTTCGTG 59.874 52.381 0.00 0.00 46.72 4.35
143 144 2.409975 GGATTGGTCGAGTTTTCGTGA 58.590 47.619 0.00 0.00 46.72 4.35
144 145 2.157085 GGATTGGTCGAGTTTTCGTGAC 59.843 50.000 0.00 0.00 46.72 3.67
145 146 1.574134 TTGGTCGAGTTTTCGTGACC 58.426 50.000 3.35 3.35 46.72 4.02
146 147 0.595567 TGGTCGAGTTTTCGTGACCG 60.596 55.000 5.84 0.00 46.72 4.79
147 148 1.280206 GGTCGAGTTTTCGTGACCGG 61.280 60.000 0.00 0.00 46.72 5.28
148 149 0.595825 GTCGAGTTTTCGTGACCGGT 60.596 55.000 6.92 6.92 46.72 5.28
149 150 0.595567 TCGAGTTTTCGTGACCGGTG 60.596 55.000 14.63 0.00 46.72 4.94
150 151 0.595567 CGAGTTTTCGTGACCGGTGA 60.596 55.000 14.63 0.00 41.84 4.02
151 152 1.137513 GAGTTTTCGTGACCGGTGAG 58.862 55.000 14.63 2.35 33.95 3.51
152 153 0.462789 AGTTTTCGTGACCGGTGAGT 59.537 50.000 14.63 0.00 33.95 3.41
153 154 0.580104 GTTTTCGTGACCGGTGAGTG 59.420 55.000 14.63 0.00 33.95 3.51
154 155 0.460722 TTTTCGTGACCGGTGAGTGA 59.539 50.000 14.63 0.60 33.95 3.41
155 156 0.677288 TTTCGTGACCGGTGAGTGAT 59.323 50.000 14.63 0.00 33.95 3.06
156 157 0.242825 TTCGTGACCGGTGAGTGATC 59.757 55.000 14.63 0.00 33.95 2.92
157 158 1.514228 CGTGACCGGTGAGTGATCG 60.514 63.158 14.63 0.00 0.00 3.69
161 162 3.461773 CCGGTGAGTGATCGGGCT 61.462 66.667 0.00 0.00 45.57 5.19
162 163 2.202797 CGGTGAGTGATCGGGCTG 60.203 66.667 0.00 0.00 0.00 4.85
163 164 2.710902 CGGTGAGTGATCGGGCTGA 61.711 63.158 0.00 0.00 0.00 4.26
164 165 1.153549 GGTGAGTGATCGGGCTGAC 60.154 63.158 0.00 0.00 0.00 3.51
165 166 1.153549 GTGAGTGATCGGGCTGACC 60.154 63.158 0.00 0.00 0.00 4.02
174 175 3.451894 GGGCTGACCGGGCATTTG 61.452 66.667 12.52 0.00 36.48 2.32
175 176 2.361104 GGCTGACCGGGCATTTGA 60.361 61.111 12.52 0.00 0.00 2.69
176 177 2.409870 GGCTGACCGGGCATTTGAG 61.410 63.158 12.52 0.00 0.00 3.02
177 178 1.377202 GCTGACCGGGCATTTGAGA 60.377 57.895 12.52 0.00 0.00 3.27
178 179 1.648467 GCTGACCGGGCATTTGAGAC 61.648 60.000 12.52 0.00 0.00 3.36
179 180 1.361668 CTGACCGGGCATTTGAGACG 61.362 60.000 12.52 0.00 0.00 4.18
180 181 1.375523 GACCGGGCATTTGAGACGT 60.376 57.895 0.00 0.00 0.00 4.34
181 182 1.635663 GACCGGGCATTTGAGACGTG 61.636 60.000 0.00 0.00 0.00 4.49
182 183 1.671054 CCGGGCATTTGAGACGTGT 60.671 57.895 0.00 0.00 0.00 4.49
183 184 1.234615 CCGGGCATTTGAGACGTGTT 61.235 55.000 0.00 0.00 0.00 3.32
184 185 0.591170 CGGGCATTTGAGACGTGTTT 59.409 50.000 0.00 0.00 0.00 2.83
185 186 1.801771 CGGGCATTTGAGACGTGTTTA 59.198 47.619 0.00 0.00 0.00 2.01
186 187 2.159707 CGGGCATTTGAGACGTGTTTAG 60.160 50.000 0.00 0.00 0.00 1.85
187 188 2.161609 GGGCATTTGAGACGTGTTTAGG 59.838 50.000 0.00 0.00 0.00 2.69
188 189 2.161609 GGCATTTGAGACGTGTTTAGGG 59.838 50.000 0.00 0.00 0.00 3.53
189 190 2.812011 GCATTTGAGACGTGTTTAGGGT 59.188 45.455 0.00 0.00 0.00 4.34
190 191 3.252458 GCATTTGAGACGTGTTTAGGGTT 59.748 43.478 0.00 0.00 0.00 4.11
191 192 4.612939 GCATTTGAGACGTGTTTAGGGTTC 60.613 45.833 0.00 0.00 0.00 3.62
192 193 2.825861 TGAGACGTGTTTAGGGTTCC 57.174 50.000 0.00 0.00 0.00 3.62
193 194 1.345415 TGAGACGTGTTTAGGGTTCCC 59.655 52.381 0.00 0.00 0.00 3.97
194 195 0.319405 AGACGTGTTTAGGGTTCCCG 59.681 55.000 0.00 0.00 0.00 5.14
195 196 0.671472 GACGTGTTTAGGGTTCCCGG 60.671 60.000 0.00 0.00 0.00 5.73
196 197 1.372307 CGTGTTTAGGGTTCCCGGT 59.628 57.895 0.00 0.00 0.00 5.28
197 198 0.250424 CGTGTTTAGGGTTCCCGGTT 60.250 55.000 0.00 0.00 0.00 4.44
198 199 1.241165 GTGTTTAGGGTTCCCGGTTG 58.759 55.000 0.00 0.00 0.00 3.77
199 200 0.845337 TGTTTAGGGTTCCCGGTTGT 59.155 50.000 0.00 0.00 0.00 3.32
200 201 2.053244 TGTTTAGGGTTCCCGGTTGTA 58.947 47.619 0.00 0.00 0.00 2.41
201 202 2.038820 TGTTTAGGGTTCCCGGTTGTAG 59.961 50.000 0.00 0.00 0.00 2.74
202 203 2.302733 GTTTAGGGTTCCCGGTTGTAGA 59.697 50.000 0.00 0.00 0.00 2.59
203 204 2.555732 TAGGGTTCCCGGTTGTAGAT 57.444 50.000 0.00 0.00 0.00 1.98
204 205 0.909623 AGGGTTCCCGGTTGTAGATG 59.090 55.000 0.00 0.00 0.00 2.90
205 206 0.746923 GGGTTCCCGGTTGTAGATGC 60.747 60.000 0.00 0.00 0.00 3.91
206 207 0.252197 GGTTCCCGGTTGTAGATGCT 59.748 55.000 0.00 0.00 0.00 3.79
251 252 5.181056 TCACAAATCCGAACAGTACGTAGTA 59.819 40.000 1.81 0.00 45.11 1.82
268 269 5.934043 ACGTAGTATTTTGACCCAGTTTACC 59.066 40.000 0.00 0.00 41.94 2.85
269 270 5.933463 CGTAGTATTTTGACCCAGTTTACCA 59.067 40.000 0.00 0.00 0.00 3.25
301 303 3.516615 GGCTACTTGTTTGTGTTTGCAA 58.483 40.909 0.00 0.00 0.00 4.08
308 310 7.143514 ACTTGTTTGTGTTTGCAAATTGATT 57.856 28.000 16.21 0.00 40.01 2.57
368 376 4.391830 TCATTTCAGTAGTGGCGAATCAAC 59.608 41.667 0.00 0.00 0.00 3.18
385 393 4.439253 TCAACCAGAGGATAGAGATCGA 57.561 45.455 0.00 0.00 32.28 3.59
394 402 7.201830 CCAGAGGATAGAGATCGACTTTTGTAA 60.202 40.741 0.00 0.00 32.28 2.41
517 525 2.786512 GATGTTCCTTGCCCTGGCCA 62.787 60.000 4.71 4.71 41.09 5.36
518 526 2.677875 GTTCCTTGCCCTGGCCAG 60.678 66.667 26.87 26.87 41.09 4.85
519 527 2.858476 TTCCTTGCCCTGGCCAGA 60.858 61.111 34.91 11.99 41.09 3.86
520 528 2.468868 TTCCTTGCCCTGGCCAGAA 61.469 57.895 34.91 19.16 41.09 3.02
521 529 2.017668 TTCCTTGCCCTGGCCAGAAA 62.018 55.000 34.91 22.10 41.09 2.52
522 530 1.305549 CCTTGCCCTGGCCAGAAAT 60.306 57.895 34.91 0.00 41.09 2.17
523 531 0.033208 CCTTGCCCTGGCCAGAAATA 60.033 55.000 34.91 14.19 41.09 1.40
524 532 1.412074 CCTTGCCCTGGCCAGAAATAT 60.412 52.381 34.91 0.00 41.09 1.28
525 533 1.684983 CTTGCCCTGGCCAGAAATATG 59.315 52.381 34.91 15.77 41.09 1.78
526 534 0.106066 TGCCCTGGCCAGAAATATGG 60.106 55.000 34.91 24.78 43.72 2.74
527 535 0.185901 GCCCTGGCCAGAAATATGGA 59.814 55.000 34.91 0.00 43.57 3.41
528 536 1.203100 GCCCTGGCCAGAAATATGGAT 60.203 52.381 34.91 0.00 43.57 3.41
529 537 2.757606 GCCCTGGCCAGAAATATGGATT 60.758 50.000 34.91 0.00 43.57 3.01
559 2914 6.010991 TGTACTGTACAACACTGGGAGTGG 62.011 50.000 17.74 0.00 41.13 4.00
565 2920 2.433446 CACTGGGAGTGGCAGCTT 59.567 61.111 0.00 0.00 42.35 3.74
566 2921 1.679311 CACTGGGAGTGGCAGCTTA 59.321 57.895 0.00 0.00 42.35 3.09
567 2922 0.036732 CACTGGGAGTGGCAGCTTAA 59.963 55.000 0.00 0.00 42.35 1.85
568 2923 0.771127 ACTGGGAGTGGCAGCTTAAA 59.229 50.000 0.00 0.00 0.00 1.52
569 2924 1.355720 ACTGGGAGTGGCAGCTTAAAT 59.644 47.619 0.00 0.00 0.00 1.40
571 2926 1.075374 TGGGAGTGGCAGCTTAAATGT 59.925 47.619 0.00 0.00 0.00 2.71
572 2927 1.474077 GGGAGTGGCAGCTTAAATGTG 59.526 52.381 0.00 0.00 0.00 3.21
574 2929 0.890683 AGTGGCAGCTTAAATGTGGC 59.109 50.000 0.00 0.00 37.28 5.01
575 2930 0.456653 GTGGCAGCTTAAATGTGGCG 60.457 55.000 0.00 0.00 39.54 5.69
576 2931 1.517039 GGCAGCTTAAATGTGGCGC 60.517 57.895 0.00 0.00 0.00 6.53
577 2932 1.517039 GCAGCTTAAATGTGGCGCC 60.517 57.895 22.73 22.73 0.00 6.53
578 2933 1.226379 CAGCTTAAATGTGGCGCCG 60.226 57.895 23.90 5.54 0.00 6.46
579 2934 2.102161 GCTTAAATGTGGCGCCGG 59.898 61.111 23.90 0.00 0.00 6.13
580 2935 2.102161 CTTAAATGTGGCGCCGGC 59.898 61.111 23.90 19.07 38.90 6.13
581 2936 2.673341 TTAAATGTGGCGCCGGCA 60.673 55.556 28.98 23.24 42.47 5.69
582 2937 2.003658 CTTAAATGTGGCGCCGGCAT 62.004 55.000 28.98 24.78 40.92 4.40
583 2938 1.599606 TTAAATGTGGCGCCGGCATT 61.600 50.000 30.89 30.89 40.92 3.56
584 2939 1.599606 TAAATGTGGCGCCGGCATTT 61.600 50.000 38.90 38.90 42.92 2.32
585 2940 1.599606 AAATGTGGCGCCGGCATTTA 61.600 50.000 37.86 16.30 39.94 1.40
586 2941 1.391157 AATGTGGCGCCGGCATTTAT 61.391 50.000 30.89 17.58 40.92 1.40
587 2942 1.795170 ATGTGGCGCCGGCATTTATC 61.795 55.000 28.98 11.55 40.92 1.75
588 2943 2.124529 TGGCGCCGGCATTTATCA 60.125 55.556 28.98 11.51 42.47 2.15
589 2944 1.750780 TGGCGCCGGCATTTATCAA 60.751 52.632 28.98 0.00 42.47 2.57
590 2945 1.315981 TGGCGCCGGCATTTATCAAA 61.316 50.000 28.98 0.00 42.47 2.69
591 2946 0.869880 GGCGCCGGCATTTATCAAAC 60.870 55.000 28.98 1.42 42.47 2.93
592 2947 0.869880 GCGCCGGCATTTATCAAACC 60.870 55.000 28.98 0.00 39.62 3.27
593 2948 0.591236 CGCCGGCATTTATCAAACCG 60.591 55.000 28.98 0.12 43.44 4.44
594 2949 0.736053 GCCGGCATTTATCAAACCGA 59.264 50.000 24.80 0.00 46.71 4.69
595 2950 1.133407 GCCGGCATTTATCAAACCGAA 59.867 47.619 24.80 0.00 46.71 4.30
596 2951 2.794631 GCCGGCATTTATCAAACCGAAG 60.795 50.000 24.80 0.00 46.71 3.79
609 2964 3.880846 CGAAGGGCATCCGCTTGC 61.881 66.667 0.00 0.00 43.40 4.01
641 2996 2.266279 AGGTTGGCCACTGTACTGTAT 58.734 47.619 3.88 0.00 37.19 2.29
669 3027 2.404923 AGTGTCTACTCTCAGCGCTA 57.595 50.000 10.99 0.00 28.79 4.26
725 3109 4.409218 GGCATGCACGCACCTGTG 62.409 66.667 21.36 0.00 42.81 3.66
820 3204 1.466950 CCGGCGAACAATACAATGTGT 59.533 47.619 9.30 0.00 32.81 3.72
1011 3407 1.003118 GATCACAGCACACCTACCCAA 59.997 52.381 0.00 0.00 0.00 4.12
1044 3440 0.984230 AGCTAGTGCCAACCAAGCTA 59.016 50.000 0.00 0.00 41.80 3.32
1045 3441 1.087501 GCTAGTGCCAACCAAGCTAC 58.912 55.000 0.00 0.00 34.49 3.58
1046 3442 1.359848 CTAGTGCCAACCAAGCTACG 58.640 55.000 0.00 0.00 0.00 3.51
1047 3443 0.672401 TAGTGCCAACCAAGCTACGC 60.672 55.000 0.00 0.00 0.00 4.42
1048 3444 2.112087 TGCCAACCAAGCTACGCA 59.888 55.556 0.00 0.00 0.00 5.24
1049 3445 1.965930 TGCCAACCAAGCTACGCAG 60.966 57.895 0.00 0.00 0.00 5.18
1308 3711 4.012895 CGGTGCGTGTGCCAGAAC 62.013 66.667 0.00 0.00 41.78 3.01
1448 3851 4.505217 CCACAGACGCGCGCATTC 62.505 66.667 32.58 25.35 0.00 2.67
1449 3852 4.505217 CACAGACGCGCGCATTCC 62.505 66.667 32.58 15.94 0.00 3.01
1450 3853 4.742201 ACAGACGCGCGCATTCCT 62.742 61.111 32.58 18.01 0.00 3.36
1451 3854 3.490759 CAGACGCGCGCATTCCTT 61.491 61.111 32.58 8.46 0.00 3.36
1452 3855 3.188786 AGACGCGCGCATTCCTTC 61.189 61.111 32.58 18.19 0.00 3.46
1453 3856 3.188786 GACGCGCGCATTCCTTCT 61.189 61.111 32.58 6.59 0.00 2.85
1454 3857 3.144120 GACGCGCGCATTCCTTCTC 62.144 63.158 32.58 12.97 0.00 2.87
1455 3858 2.887568 CGCGCGCATTCCTTCTCT 60.888 61.111 32.61 0.00 0.00 3.10
1456 3859 2.864931 CGCGCGCATTCCTTCTCTC 61.865 63.158 32.61 0.00 0.00 3.20
1457 3860 1.520342 GCGCGCATTCCTTCTCTCT 60.520 57.895 29.10 0.00 0.00 3.10
1458 3861 1.486644 GCGCGCATTCCTTCTCTCTC 61.487 60.000 29.10 0.00 0.00 3.20
1459 3862 0.102120 CGCGCATTCCTTCTCTCTCT 59.898 55.000 8.75 0.00 0.00 3.10
1460 3863 1.851658 GCGCATTCCTTCTCTCTCTC 58.148 55.000 0.30 0.00 0.00 3.20
1461 3864 1.408702 GCGCATTCCTTCTCTCTCTCT 59.591 52.381 0.30 0.00 0.00 3.10
1462 3865 2.543653 GCGCATTCCTTCTCTCTCTCTC 60.544 54.545 0.30 0.00 0.00 3.20
1463 3866 2.951642 CGCATTCCTTCTCTCTCTCTCT 59.048 50.000 0.00 0.00 0.00 3.10
1464 3867 3.003689 CGCATTCCTTCTCTCTCTCTCTC 59.996 52.174 0.00 0.00 0.00 3.20
1465 3868 4.210331 GCATTCCTTCTCTCTCTCTCTCT 58.790 47.826 0.00 0.00 0.00 3.10
1466 3869 4.276926 GCATTCCTTCTCTCTCTCTCTCTC 59.723 50.000 0.00 0.00 0.00 3.20
1467 3870 5.688807 CATTCCTTCTCTCTCTCTCTCTCT 58.311 45.833 0.00 0.00 0.00 3.10
1468 3871 5.359194 TTCCTTCTCTCTCTCTCTCTCTC 57.641 47.826 0.00 0.00 0.00 3.20
1469 3872 4.624913 TCCTTCTCTCTCTCTCTCTCTCT 58.375 47.826 0.00 0.00 0.00 3.10
1470 3873 4.651503 TCCTTCTCTCTCTCTCTCTCTCTC 59.348 50.000 0.00 0.00 0.00 3.20
1471 3874 4.653341 CCTTCTCTCTCTCTCTCTCTCTCT 59.347 50.000 0.00 0.00 0.00 3.10
1472 3875 5.221422 CCTTCTCTCTCTCTCTCTCTCTCTC 60.221 52.000 0.00 0.00 0.00 3.20
1473 3876 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
1474 3877 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1475 3878 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1476 3879 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1477 3880 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1478 3881 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1479 3882 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1480 3883 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1481 3884 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1482 3885 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1483 3886 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1484 3887 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1485 3888 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1486 3889 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1487 3890 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1488 3891 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1491 3894 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1492 3895 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1496 3899 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1498 3901 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1500 3903 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1506 3909 6.881065 TCTCTCTCTCTCTCTCTCTCTTTTTG 59.119 42.308 0.00 0.00 0.00 2.44
1530 3935 1.570347 AAGCAAATAACGGCGTGCGA 61.570 50.000 15.70 1.95 41.90 5.10
1531 3936 1.061887 GCAAATAACGGCGTGCGAT 59.938 52.632 15.70 4.74 0.00 4.58
1532 3937 0.923911 GCAAATAACGGCGTGCGATC 60.924 55.000 15.70 0.00 0.00 3.69
1556 3969 2.427575 CGATCGATCGGCCGTCTG 60.428 66.667 34.54 15.69 45.93 3.51
1557 3970 2.731348 GATCGATCGGCCGTCTGC 60.731 66.667 27.15 11.85 40.16 4.26
1558 3971 4.630785 ATCGATCGGCCGTCTGCG 62.631 66.667 27.15 22.53 42.61 5.18
1560 3973 4.630785 CGATCGGCCGTCTGCGAT 62.631 66.667 27.15 10.16 42.61 4.58
1561 3974 3.032609 GATCGGCCGTCTGCGATG 61.033 66.667 27.15 0.00 42.61 3.84
1562 3975 3.484742 GATCGGCCGTCTGCGATGA 62.485 63.158 27.15 1.58 42.61 2.92
1563 3976 2.755542 GATCGGCCGTCTGCGATGAT 62.756 60.000 27.15 7.57 42.61 2.45
1564 3977 2.369257 ATCGGCCGTCTGCGATGATT 62.369 55.000 27.15 0.00 42.61 2.57
1565 3978 2.589492 CGGCCGTCTGCGATGATTC 61.589 63.158 19.50 0.00 42.61 2.52
1566 3979 1.227380 GGCCGTCTGCGATGATTCT 60.227 57.895 0.00 0.00 42.61 2.40
1567 3980 0.811616 GGCCGTCTGCGATGATTCTT 60.812 55.000 0.00 0.00 42.61 2.52
1568 3981 0.579156 GCCGTCTGCGATGATTCTTC 59.421 55.000 0.00 0.00 41.33 2.87
1569 3982 1.804372 GCCGTCTGCGATGATTCTTCT 60.804 52.381 0.00 0.00 41.33 2.85
1570 3983 2.544685 CCGTCTGCGATGATTCTTCTT 58.455 47.619 0.00 0.00 41.33 2.52
1571 3984 2.932614 CCGTCTGCGATGATTCTTCTTT 59.067 45.455 0.00 0.00 41.33 2.52
1572 3985 3.372206 CCGTCTGCGATGATTCTTCTTTT 59.628 43.478 0.00 0.00 41.33 2.27
1573 3986 4.566759 CCGTCTGCGATGATTCTTCTTTTA 59.433 41.667 0.00 0.00 41.33 1.52
1607 4020 6.406820 GTTCTCGATTTAGATTGAGCTTTCG 58.593 40.000 5.74 0.00 41.68 3.46
1631 4044 0.179250 GTACGTTCGTGCATGTGCTG 60.179 55.000 5.68 0.00 42.66 4.41
1688 4101 6.264067 CCTCTTGTGAATCAGTCCTTTCTTTT 59.736 38.462 0.00 0.00 0.00 2.27
1689 4102 7.031226 TCTTGTGAATCAGTCCTTTCTTTTG 57.969 36.000 0.00 0.00 0.00 2.44
1690 4103 6.603201 TCTTGTGAATCAGTCCTTTCTTTTGT 59.397 34.615 0.00 0.00 0.00 2.83
1691 4104 7.773224 TCTTGTGAATCAGTCCTTTCTTTTGTA 59.227 33.333 0.00 0.00 0.00 2.41
1692 4105 8.463930 TTGTGAATCAGTCCTTTCTTTTGTAT 57.536 30.769 0.00 0.00 0.00 2.29
1693 4106 8.463930 TGTGAATCAGTCCTTTCTTTTGTATT 57.536 30.769 0.00 0.00 0.00 1.89
1694 4107 8.567948 TGTGAATCAGTCCTTTCTTTTGTATTC 58.432 33.333 0.00 0.00 0.00 1.75
1695 4108 8.787852 GTGAATCAGTCCTTTCTTTTGTATTCT 58.212 33.333 0.00 0.00 0.00 2.40
1696 4109 8.786898 TGAATCAGTCCTTTCTTTTGTATTCTG 58.213 33.333 0.00 0.00 0.00 3.02
1697 4110 8.697507 AATCAGTCCTTTCTTTTGTATTCTGT 57.302 30.769 0.00 0.00 0.00 3.41
1698 4111 9.793259 AATCAGTCCTTTCTTTTGTATTCTGTA 57.207 29.630 0.00 0.00 0.00 2.74
1699 4112 8.603242 TCAGTCCTTTCTTTTGTATTCTGTAC 57.397 34.615 0.00 0.00 0.00 2.90
1700 4113 7.660208 TCAGTCCTTTCTTTTGTATTCTGTACC 59.340 37.037 0.00 0.00 0.00 3.34
1701 4114 6.649557 AGTCCTTTCTTTTGTATTCTGTACCG 59.350 38.462 0.00 0.00 0.00 4.02
1702 4115 5.935789 TCCTTTCTTTTGTATTCTGTACCGG 59.064 40.000 0.00 0.00 0.00 5.28
1703 4116 5.704053 CCTTTCTTTTGTATTCTGTACCGGT 59.296 40.000 13.98 13.98 0.00 5.28
1704 4117 6.348213 CCTTTCTTTTGTATTCTGTACCGGTG 60.348 42.308 19.93 0.00 0.00 4.94
1729 4142 4.157817 GGCTGTACCGTACGTGTG 57.842 61.111 15.21 1.10 0.00 3.82
1730 4143 1.286880 GGCTGTACCGTACGTGTGT 59.713 57.895 15.21 7.69 0.00 3.72
1731 4144 1.005294 GGCTGTACCGTACGTGTGTG 61.005 60.000 15.21 0.29 0.00 3.82
1732 4145 0.040157 GCTGTACCGTACGTGTGTGA 60.040 55.000 15.21 0.00 0.00 3.58
1733 4146 1.401931 GCTGTACCGTACGTGTGTGAT 60.402 52.381 15.21 0.00 0.00 3.06
1734 4147 2.247637 CTGTACCGTACGTGTGTGATG 58.752 52.381 15.21 0.00 0.00 3.07
1735 4148 0.986992 GTACCGTACGTGTGTGATGC 59.013 55.000 15.21 0.00 0.00 3.91
1736 4149 0.597072 TACCGTACGTGTGTGATGCA 59.403 50.000 15.21 0.00 0.00 3.96
1750 4163 4.200287 TGCACAATCGCATACGCT 57.800 50.000 0.00 0.00 36.86 5.07
1751 4164 3.354131 TGCACAATCGCATACGCTA 57.646 47.368 0.00 0.00 36.86 4.26
1752 4165 0.927537 TGCACAATCGCATACGCTAC 59.072 50.000 0.00 0.00 36.86 3.58
1753 4166 0.232303 GCACAATCGCATACGCTACC 59.768 55.000 0.00 0.00 39.84 3.18
1754 4167 0.502695 CACAATCGCATACGCTACCG 59.497 55.000 0.00 0.00 39.84 4.02
1797 4210 8.110612 CGCATTCGGTACTCATCAATTATTATC 58.889 37.037 0.00 0.00 0.00 1.75
2090 4507 4.202430 TGTCCTACTCAGATATACGAGGCA 60.202 45.833 0.00 0.00 33.36 4.75
2091 4508 4.393680 GTCCTACTCAGATATACGAGGCAG 59.606 50.000 0.00 3.19 33.36 4.85
2092 4509 3.127895 CCTACTCAGATATACGAGGCAGC 59.872 52.174 0.00 0.00 33.36 5.25
2135 4552 1.979619 ATAAGGTTCTTCCCGCCCGG 61.980 60.000 0.00 0.00 36.75 5.73
2167 4586 1.134965 GTGGTGCTTCTAGCGTCATCT 60.135 52.381 0.00 0.00 46.26 2.90
2181 4600 1.142465 GTCATCTGAGGGCATGTGGAT 59.858 52.381 0.00 0.00 0.00 3.41
2210 4629 1.070786 GGCGGATCTTGCGGGATTA 59.929 57.895 0.00 0.00 0.00 1.75
2261 4681 2.159014 TGGATCCGGTCTTTATTCGTGG 60.159 50.000 7.39 0.00 0.00 4.94
2265 4685 1.066716 CCGGTCTTTATTCGTGGGTGA 60.067 52.381 0.00 0.00 0.00 4.02
2337 4757 1.891919 GGTTGCTGTTCTGGTGCGA 60.892 57.895 0.00 0.00 0.00 5.10
2348 4768 2.889512 TCTGGTGCGATGGTCCTATAT 58.110 47.619 0.00 0.00 0.00 0.86
2422 4842 2.276740 GTGAGGGAGGGGCAATGG 59.723 66.667 0.00 0.00 0.00 3.16
2469 4889 1.129998 GTGCTTGTAGTCGTCGCTAGA 59.870 52.381 0.00 0.00 0.00 2.43
2564 4987 4.930463 TTGAAAGTTTTCCCGCAAAAAC 57.070 36.364 12.92 12.92 45.33 2.43
2566 4989 3.680458 TGAAAGTTTTCCCGCAAAAACAC 59.320 39.130 19.37 13.00 46.68 3.32
2567 4990 3.603158 AAGTTTTCCCGCAAAAACACT 57.397 38.095 19.37 8.44 46.68 3.55
2568 4991 2.887337 AGTTTTCCCGCAAAAACACTG 58.113 42.857 19.37 0.00 46.68 3.66
2572 4997 2.039818 TCCCGCAAAAACACTGTGTA 57.960 45.000 14.69 0.00 0.00 2.90
2645 5070 5.104360 TGGAATTACATCTAGAGGCTTTGCT 60.104 40.000 3.87 0.00 0.00 3.91
2646 5071 5.238214 GGAATTACATCTAGAGGCTTTGCTG 59.762 44.000 3.87 0.00 0.00 4.41
2687 5112 8.598041 ACTAAAGGATGATCTACACAAGAAAGT 58.402 33.333 0.00 0.00 37.89 2.66
2690 5115 8.697507 AAGGATGATCTACACAAGAAAGTTTT 57.302 30.769 0.00 0.00 37.89 2.43
2691 5116 8.697507 AGGATGATCTACACAAGAAAGTTTTT 57.302 30.769 0.00 0.00 37.89 1.94
2729 5154 5.187967 TGAGTGGAAAGTCCTCTTCTAATCC 59.812 44.000 0.70 0.00 40.18 3.01
2731 5156 4.225267 GTGGAAAGTCCTCTTCTAATCCCA 59.775 45.833 0.00 0.00 37.46 4.37
2763 5198 9.177304 GGGATAAACAGTAAAAACGAGAAAAAG 57.823 33.333 0.00 0.00 0.00 2.27
2771 5206 8.129211 CAGTAAAAACGAGAAAAAGATGGAAGT 58.871 33.333 0.00 0.00 0.00 3.01
2845 5288 7.569957 GCTTGACAATTTTCATCACCAAATGAC 60.570 37.037 0.00 0.00 41.24 3.06
2863 5306 3.286353 TGACACTTTGAAAGTCATGGCA 58.714 40.909 7.75 2.93 40.46 4.92
2865 5308 4.202040 TGACACTTTGAAAGTCATGGCAAG 60.202 41.667 7.75 0.00 40.46 4.01
2929 5372 6.594937 AGCATCGATTTTGTTTATTTTGCCAT 59.405 30.769 0.00 0.00 0.00 4.40
2944 5387 1.134640 TGCCATGAATTGCAGGAATGC 60.135 47.619 0.00 0.00 32.77 3.56
2956 5399 1.961394 CAGGAATGCCCCTTCATGATG 59.039 52.381 0.00 0.00 38.80 3.07
2999 5442 4.770795 ACATCTATCAAAGGCTACCACAC 58.229 43.478 0.00 0.00 0.00 3.82
3033 5476 7.011950 ACCGGATGTTTTGATTTTTCTTTTTCC 59.988 33.333 9.46 0.00 0.00 3.13
3070 5513 1.986413 AGCATTTGAGCTCGGGAGT 59.014 52.632 9.64 0.00 42.18 3.85
3078 5521 3.579534 TGAGCTCGGGAGTAGATACTT 57.420 47.619 9.64 0.00 36.50 2.24
3109 5552 7.993183 TCCAACCATAAGATTCTTAAGCTAAGG 59.007 37.037 10.07 8.44 36.45 2.69
3123 5566 3.201290 AGCTAAGGAATGTGCTTGATCG 58.799 45.455 0.00 0.00 30.96 3.69
3152 5595 2.820787 ACGGAGACTAGAAGTGAGGTTG 59.179 50.000 0.00 0.00 0.00 3.77
3219 5662 5.157067 GCTCAAGTAAATTCTTGGCTTCAC 58.843 41.667 6.96 0.00 43.25 3.18
3232 5675 1.244019 GCTTCACCGGCTTTCACCAT 61.244 55.000 0.00 0.00 0.00 3.55
3244 5687 3.428589 GCTTTCACCATTCTCCTGCAATC 60.429 47.826 0.00 0.00 0.00 2.67
3253 5696 2.825223 TCTCCTGCAATCAGAGAAGGA 58.175 47.619 3.62 0.00 42.95 3.36
3259 5702 4.441356 CCTGCAATCAGAGAAGGAGACTAC 60.441 50.000 0.00 0.00 40.94 2.73
3264 5707 6.279882 CAATCAGAGAAGGAGACTACATTCC 58.720 44.000 0.00 0.00 42.68 3.01
3269 5712 5.420739 AGAGAAGGAGACTACATTCCAGTTC 59.579 44.000 0.00 0.00 42.68 3.01
3290 5733 3.951037 TCAAAGCCTTGACAACTTTGCTA 59.049 39.130 19.26 7.20 46.25 3.49
3301 5744 7.801716 TGACAACTTTGCTACAAGAAGTAAT 57.198 32.000 0.00 0.00 33.54 1.89
3302 5745 7.639039 TGACAACTTTGCTACAAGAAGTAATG 58.361 34.615 0.00 0.00 33.54 1.90
3325 5768 1.220529 GAGCTTTTGCCTGCAAAACC 58.779 50.000 22.32 17.21 46.80 3.27
3411 5854 2.745515 ACTCTAAGAGAAACCGCCAC 57.254 50.000 0.00 0.00 33.32 5.01
3414 5857 1.001633 TCTAAGAGAAACCGCCACACC 59.998 52.381 0.00 0.00 0.00 4.16
3417 5860 0.106918 AGAGAAACCGCCACACCAAA 60.107 50.000 0.00 0.00 0.00 3.28
3418 5861 0.310854 GAGAAACCGCCACACCAAAG 59.689 55.000 0.00 0.00 0.00 2.77
3468 5911 2.037772 GACGCCATCTATTCCCAGTCAT 59.962 50.000 0.00 0.00 0.00 3.06
3479 5922 2.889512 TCCCAGTCATATCGCCACTAT 58.110 47.619 0.00 0.00 0.00 2.12
3489 5932 3.914426 ATCGCCACTATCTCCACTTTT 57.086 42.857 0.00 0.00 0.00 2.27
3490 5933 3.247006 TCGCCACTATCTCCACTTTTC 57.753 47.619 0.00 0.00 0.00 2.29
3543 5986 2.111043 CGAAGCCACCACCACACT 59.889 61.111 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.443045 CACCACATCGGCTTGGCC 61.443 66.667 0.00 0.00 46.75 5.36
13 14 3.443045 CCACCACATCGGCTTGGC 61.443 66.667 0.00 0.00 39.03 4.52
14 15 2.751436 CCCACCACATCGGCTTGG 60.751 66.667 0.00 0.00 39.03 3.61
15 16 3.443045 GCCCACCACATCGGCTTG 61.443 66.667 0.00 0.00 39.70 4.01
36 37 4.394712 GGATATGGGCGCTCCGGG 62.395 72.222 3.94 0.00 38.76 5.73
37 38 4.742201 CGGATATGGGCGCTCCGG 62.742 72.222 23.11 0.00 46.32 5.14
40 41 2.167398 TTAGGCGGATATGGGCGCTC 62.167 60.000 7.64 2.47 34.74 5.03
41 42 1.553690 ATTAGGCGGATATGGGCGCT 61.554 55.000 7.64 0.00 34.74 5.92
42 43 0.177141 TATTAGGCGGATATGGGCGC 59.823 55.000 0.00 0.00 34.74 6.53
43 44 2.910688 ATATTAGGCGGATATGGGCG 57.089 50.000 0.00 0.00 34.74 6.13
44 45 5.063880 CCTAAATATTAGGCGGATATGGGC 58.936 45.833 3.37 0.00 0.00 5.36
55 56 7.127955 ACCCTCATATCCAGCCTAAATATTAGG 59.872 40.741 11.07 11.07 37.75 2.69
56 57 8.095452 ACCCTCATATCCAGCCTAAATATTAG 57.905 38.462 0.00 0.00 0.00 1.73
57 58 8.328758 CAACCCTCATATCCAGCCTAAATATTA 58.671 37.037 0.00 0.00 0.00 0.98
58 59 6.977244 ACCCTCATATCCAGCCTAAATATT 57.023 37.500 0.00 0.00 0.00 1.28
59 60 6.725364 CAACCCTCATATCCAGCCTAAATAT 58.275 40.000 0.00 0.00 0.00 1.28
60 61 5.514834 GCAACCCTCATATCCAGCCTAAATA 60.515 44.000 0.00 0.00 0.00 1.40
61 62 4.751028 GCAACCCTCATATCCAGCCTAAAT 60.751 45.833 0.00 0.00 0.00 1.40
62 63 3.435026 GCAACCCTCATATCCAGCCTAAA 60.435 47.826 0.00 0.00 0.00 1.85
63 64 2.106511 GCAACCCTCATATCCAGCCTAA 59.893 50.000 0.00 0.00 0.00 2.69
64 65 1.699634 GCAACCCTCATATCCAGCCTA 59.300 52.381 0.00 0.00 0.00 3.93
65 66 0.475906 GCAACCCTCATATCCAGCCT 59.524 55.000 0.00 0.00 0.00 4.58
66 67 0.538287 GGCAACCCTCATATCCAGCC 60.538 60.000 0.00 0.00 0.00 4.85
67 68 0.886490 CGGCAACCCTCATATCCAGC 60.886 60.000 0.00 0.00 0.00 4.85
68 69 0.250467 CCGGCAACCCTCATATCCAG 60.250 60.000 0.00 0.00 0.00 3.86
69 70 0.986019 ACCGGCAACCCTCATATCCA 60.986 55.000 0.00 0.00 0.00 3.41
70 71 0.250338 GACCGGCAACCCTCATATCC 60.250 60.000 0.00 0.00 0.00 2.59
71 72 0.468226 TGACCGGCAACCCTCATATC 59.532 55.000 0.00 0.00 0.00 1.63
72 73 0.469917 CTGACCGGCAACCCTCATAT 59.530 55.000 0.00 0.00 0.00 1.78
73 74 0.907704 ACTGACCGGCAACCCTCATA 60.908 55.000 0.00 0.00 0.00 2.15
74 75 2.185310 GACTGACCGGCAACCCTCAT 62.185 60.000 0.00 0.00 0.00 2.90
75 76 2.847234 ACTGACCGGCAACCCTCA 60.847 61.111 0.00 0.00 0.00 3.86
76 77 2.047179 GACTGACCGGCAACCCTC 60.047 66.667 0.00 0.00 0.00 4.30
77 78 3.637273 GGACTGACCGGCAACCCT 61.637 66.667 0.00 0.00 0.00 4.34
78 79 3.485346 TTGGACTGACCGGCAACCC 62.485 63.158 0.00 5.40 42.61 4.11
79 80 1.966451 CTTGGACTGACCGGCAACC 60.966 63.158 0.00 7.94 42.61 3.77
80 81 2.617274 GCTTGGACTGACCGGCAAC 61.617 63.158 0.00 0.00 42.61 4.17
81 82 2.281484 GCTTGGACTGACCGGCAA 60.281 61.111 0.00 0.00 42.61 4.52
82 83 4.680237 CGCTTGGACTGACCGGCA 62.680 66.667 0.00 0.00 42.61 5.69
83 84 4.681978 ACGCTTGGACTGACCGGC 62.682 66.667 0.00 0.00 42.61 6.13
84 85 1.597027 AAACGCTTGGACTGACCGG 60.597 57.895 0.00 0.00 42.61 5.28
85 86 0.878523 TCAAACGCTTGGACTGACCG 60.879 55.000 0.00 0.00 42.61 4.79
86 87 0.868406 CTCAAACGCTTGGACTGACC 59.132 55.000 0.00 0.00 39.54 4.02
87 88 1.527311 GTCTCAAACGCTTGGACTGAC 59.473 52.381 10.86 6.23 33.46 3.51
88 89 1.540363 GGTCTCAAACGCTTGGACTGA 60.540 52.381 15.18 2.09 35.12 3.41
89 90 0.868406 GGTCTCAAACGCTTGGACTG 59.132 55.000 15.18 0.24 35.12 3.51
90 91 0.250338 GGGTCTCAAACGCTTGGACT 60.250 55.000 15.18 0.00 37.81 3.85
91 92 1.566018 CGGGTCTCAAACGCTTGGAC 61.566 60.000 10.07 10.07 38.63 4.02
92 93 1.301401 CGGGTCTCAAACGCTTGGA 60.301 57.895 0.00 0.00 38.63 3.53
93 94 1.164041 AACGGGTCTCAAACGCTTGG 61.164 55.000 0.00 0.00 38.63 3.61
94 95 0.661020 AAACGGGTCTCAAACGCTTG 59.339 50.000 0.00 0.00 38.63 4.01
95 96 0.661020 CAAACGGGTCTCAAACGCTT 59.339 50.000 0.00 0.00 38.63 4.68
96 97 0.179067 TCAAACGGGTCTCAAACGCT 60.179 50.000 0.00 0.00 38.63 5.07
97 98 0.234884 CTCAAACGGGTCTCAAACGC 59.765 55.000 0.00 0.00 37.46 4.84
98 99 0.865769 CCTCAAACGGGTCTCAAACG 59.134 55.000 0.00 0.00 0.00 3.60
99 100 1.602377 CACCTCAAACGGGTCTCAAAC 59.398 52.381 0.00 0.00 34.44 2.93
100 101 1.487142 TCACCTCAAACGGGTCTCAAA 59.513 47.619 0.00 0.00 34.44 2.69
101 102 1.124780 TCACCTCAAACGGGTCTCAA 58.875 50.000 0.00 0.00 34.44 3.02
102 103 1.275291 GATCACCTCAAACGGGTCTCA 59.725 52.381 0.00 0.00 34.44 3.27
103 104 1.736032 CGATCACCTCAAACGGGTCTC 60.736 57.143 0.00 0.00 34.44 3.36
104 105 0.246635 CGATCACCTCAAACGGGTCT 59.753 55.000 0.00 0.00 34.44 3.85
105 106 0.739813 CCGATCACCTCAAACGGGTC 60.740 60.000 0.00 0.00 39.92 4.46
106 107 1.189524 TCCGATCACCTCAAACGGGT 61.190 55.000 0.00 0.00 43.14 5.28
107 108 0.178068 ATCCGATCACCTCAAACGGG 59.822 55.000 0.00 0.00 43.14 5.28
108 109 1.665679 CAATCCGATCACCTCAAACGG 59.334 52.381 0.00 0.00 44.09 4.44
109 110 1.665679 CCAATCCGATCACCTCAAACG 59.334 52.381 0.00 0.00 0.00 3.60
110 111 2.678336 GACCAATCCGATCACCTCAAAC 59.322 50.000 0.00 0.00 0.00 2.93
111 112 2.676750 CGACCAATCCGATCACCTCAAA 60.677 50.000 0.00 0.00 0.00 2.69
112 113 1.134818 CGACCAATCCGATCACCTCAA 60.135 52.381 0.00 0.00 0.00 3.02
113 114 0.459899 CGACCAATCCGATCACCTCA 59.540 55.000 0.00 0.00 0.00 3.86
114 115 0.744874 TCGACCAATCCGATCACCTC 59.255 55.000 0.00 0.00 0.00 3.85
115 116 0.747255 CTCGACCAATCCGATCACCT 59.253 55.000 0.00 0.00 35.35 4.00
116 117 0.460311 ACTCGACCAATCCGATCACC 59.540 55.000 0.00 0.00 35.35 4.02
117 118 2.295253 AACTCGACCAATCCGATCAC 57.705 50.000 0.00 0.00 35.35 3.06
118 119 3.259064 GAAAACTCGACCAATCCGATCA 58.741 45.455 0.00 0.00 35.35 2.92
119 120 2.281762 CGAAAACTCGACCAATCCGATC 59.718 50.000 0.00 0.00 35.35 3.69
120 121 2.268298 CGAAAACTCGACCAATCCGAT 58.732 47.619 0.00 0.00 35.35 4.18
121 122 1.000060 ACGAAAACTCGACCAATCCGA 60.000 47.619 0.89 0.00 36.85 4.55
122 123 1.126113 CACGAAAACTCGACCAATCCG 59.874 52.381 0.89 0.00 36.85 4.18
123 124 2.157085 GTCACGAAAACTCGACCAATCC 59.843 50.000 0.89 0.00 36.85 3.01
124 125 2.157085 GGTCACGAAAACTCGACCAATC 59.843 50.000 0.89 0.00 45.96 2.67
125 126 2.140717 GGTCACGAAAACTCGACCAAT 58.859 47.619 0.89 0.00 45.96 3.16
126 127 1.574134 GGTCACGAAAACTCGACCAA 58.426 50.000 0.89 0.00 45.96 3.67
127 128 0.595567 CGGTCACGAAAACTCGACCA 60.596 55.000 8.07 0.00 46.84 4.02
128 129 1.280206 CCGGTCACGAAAACTCGACC 61.280 60.000 0.89 0.00 44.60 4.79
129 130 0.595825 ACCGGTCACGAAAACTCGAC 60.596 55.000 0.00 0.00 44.60 4.20
130 131 0.595567 CACCGGTCACGAAAACTCGA 60.596 55.000 2.59 0.00 44.60 4.04
131 132 0.595567 TCACCGGTCACGAAAACTCG 60.596 55.000 2.59 0.00 44.60 4.18
132 133 1.137513 CTCACCGGTCACGAAAACTC 58.862 55.000 2.59 0.00 44.60 3.01
133 134 0.462789 ACTCACCGGTCACGAAAACT 59.537 50.000 2.59 0.00 44.60 2.66
134 135 0.580104 CACTCACCGGTCACGAAAAC 59.420 55.000 2.59 0.00 44.60 2.43
135 136 0.460722 TCACTCACCGGTCACGAAAA 59.539 50.000 2.59 0.00 44.60 2.29
136 137 0.677288 ATCACTCACCGGTCACGAAA 59.323 50.000 2.59 0.00 44.60 3.46
137 138 0.242825 GATCACTCACCGGTCACGAA 59.757 55.000 2.59 0.00 44.60 3.85
138 139 1.880894 GATCACTCACCGGTCACGA 59.119 57.895 2.59 0.00 44.60 4.35
139 140 1.514228 CGATCACTCACCGGTCACG 60.514 63.158 2.59 0.00 40.55 4.35
140 141 1.153823 CCGATCACTCACCGGTCAC 60.154 63.158 2.59 0.00 38.55 3.67
141 142 2.348104 CCCGATCACTCACCGGTCA 61.348 63.158 2.59 0.00 41.53 4.02
142 143 2.494918 CCCGATCACTCACCGGTC 59.505 66.667 2.59 0.00 41.53 4.79
143 144 3.771160 GCCCGATCACTCACCGGT 61.771 66.667 0.00 0.00 41.53 5.28
144 145 3.461773 AGCCCGATCACTCACCGG 61.462 66.667 0.00 0.00 42.64 5.28
145 146 2.202797 CAGCCCGATCACTCACCG 60.203 66.667 0.00 0.00 0.00 4.94
146 147 1.153549 GTCAGCCCGATCACTCACC 60.154 63.158 0.00 0.00 0.00 4.02
147 148 1.153549 GGTCAGCCCGATCACTCAC 60.154 63.158 0.00 0.00 0.00 3.51
148 149 3.298958 GGTCAGCCCGATCACTCA 58.701 61.111 0.00 0.00 0.00 3.41
157 158 3.451894 CAAATGCCCGGTCAGCCC 61.452 66.667 0.00 0.00 0.00 5.19
158 159 2.361104 TCAAATGCCCGGTCAGCC 60.361 61.111 0.00 0.00 0.00 4.85
159 160 1.377202 TCTCAAATGCCCGGTCAGC 60.377 57.895 0.00 0.00 0.00 4.26
160 161 1.361668 CGTCTCAAATGCCCGGTCAG 61.362 60.000 0.00 0.00 0.00 3.51
161 162 1.375396 CGTCTCAAATGCCCGGTCA 60.375 57.895 0.00 0.00 0.00 4.02
162 163 1.375523 ACGTCTCAAATGCCCGGTC 60.376 57.895 0.00 0.00 0.00 4.79
163 164 1.671054 CACGTCTCAAATGCCCGGT 60.671 57.895 0.00 0.00 0.00 5.28
164 165 1.234615 AACACGTCTCAAATGCCCGG 61.235 55.000 0.00 0.00 0.00 5.73
165 166 0.591170 AAACACGTCTCAAATGCCCG 59.409 50.000 0.00 0.00 0.00 6.13
166 167 2.161609 CCTAAACACGTCTCAAATGCCC 59.838 50.000 0.00 0.00 0.00 5.36
167 168 2.161609 CCCTAAACACGTCTCAAATGCC 59.838 50.000 0.00 0.00 0.00 4.40
168 169 2.812011 ACCCTAAACACGTCTCAAATGC 59.188 45.455 0.00 0.00 0.00 3.56
169 170 4.083484 GGAACCCTAAACACGTCTCAAATG 60.083 45.833 0.00 0.00 0.00 2.32
170 171 4.070009 GGAACCCTAAACACGTCTCAAAT 58.930 43.478 0.00 0.00 0.00 2.32
171 172 3.469739 GGAACCCTAAACACGTCTCAAA 58.530 45.455 0.00 0.00 0.00 2.69
172 173 3.116079 GGAACCCTAAACACGTCTCAA 57.884 47.619 0.00 0.00 0.00 3.02
173 174 2.825861 GGAACCCTAAACACGTCTCA 57.174 50.000 0.00 0.00 0.00 3.27
188 189 1.653151 GAGCATCTACAACCGGGAAC 58.347 55.000 6.32 0.00 0.00 3.62
202 203 8.619546 GAAACTATTTCATCTTGCTAAGAGCAT 58.380 33.333 1.30 0.00 44.02 3.79
203 204 7.607607 TGAAACTATTTCATCTTGCTAAGAGCA 59.392 33.333 0.00 0.00 46.12 4.26
204 205 7.978982 TGAAACTATTTCATCTTGCTAAGAGC 58.021 34.615 0.00 0.00 44.21 4.09
250 251 5.446860 TGTGTGGTAAACTGGGTCAAAATA 58.553 37.500 0.00 0.00 0.00 1.40
251 252 4.282496 TGTGTGGTAAACTGGGTCAAAAT 58.718 39.130 0.00 0.00 0.00 1.82
252 253 3.698289 TGTGTGGTAAACTGGGTCAAAA 58.302 40.909 0.00 0.00 0.00 2.44
268 269 0.038166 AAGTAGCCCCACCATGTGTG 59.962 55.000 7.20 7.20 45.01 3.82
269 270 0.038166 CAAGTAGCCCCACCATGTGT 59.962 55.000 0.00 0.00 0.00 3.72
281 282 5.717038 ATTTGCAAACACAAACAAGTAGC 57.283 34.783 15.41 0.00 42.01 3.58
282 283 7.288317 TCAATTTGCAAACACAAACAAGTAG 57.712 32.000 15.41 0.00 42.01 2.57
301 303 2.416547 CGAACTGAGCCGTGAATCAATT 59.583 45.455 0.00 0.00 0.00 2.32
308 310 0.315886 TAAAGCGAACTGAGCCGTGA 59.684 50.000 0.00 0.00 34.64 4.35
368 376 5.068460 ACAAAAGTCGATCTCTATCCTCTGG 59.932 44.000 0.00 0.00 0.00 3.86
385 393 5.396324 CCTTTTCCTTTGGGCTTACAAAAGT 60.396 40.000 0.00 0.00 39.60 2.66
394 402 0.398381 TGCACCTTTTCCTTTGGGCT 60.398 50.000 0.00 0.00 0.00 5.19
517 525 6.538742 CAGTACACACGGAAATCCATATTTCT 59.461 38.462 9.89 0.00 46.84 2.52
518 526 6.315393 ACAGTACACACGGAAATCCATATTTC 59.685 38.462 0.00 2.87 46.91 2.17
519 527 6.177610 ACAGTACACACGGAAATCCATATTT 58.822 36.000 0.00 0.00 38.03 1.40
520 528 5.741011 ACAGTACACACGGAAATCCATATT 58.259 37.500 0.00 0.00 35.14 1.28
521 529 5.353394 ACAGTACACACGGAAATCCATAT 57.647 39.130 0.00 0.00 35.14 1.78
522 530 4.811969 ACAGTACACACGGAAATCCATA 57.188 40.909 0.00 0.00 35.14 2.74
523 531 3.695830 ACAGTACACACGGAAATCCAT 57.304 42.857 0.00 0.00 35.14 3.41
524 532 3.321396 TGTACAGTACACACGGAAATCCA 59.679 43.478 9.51 0.00 32.89 3.41
525 533 3.916761 TGTACAGTACACACGGAAATCC 58.083 45.455 9.51 0.00 32.89 3.01
526 534 4.746115 TGTTGTACAGTACACACGGAAATC 59.254 41.667 13.26 0.00 38.63 2.17
527 535 4.508861 GTGTTGTACAGTACACACGGAAAT 59.491 41.667 20.83 0.00 43.15 2.17
528 536 3.864583 GTGTTGTACAGTACACACGGAAA 59.135 43.478 20.83 3.69 43.15 3.13
529 537 3.130869 AGTGTTGTACAGTACACACGGAA 59.869 43.478 25.28 8.05 45.43 4.30
559 2914 1.517039 GGCGCCACATTTAAGCTGC 60.517 57.895 24.80 0.00 0.00 5.25
563 2918 2.003658 ATGCCGGCGCCACATTTAAG 62.004 55.000 28.98 7.02 0.00 1.85
564 2919 1.599606 AATGCCGGCGCCACATTTAA 61.600 50.000 29.56 9.59 29.94 1.52
565 2920 1.599606 AAATGCCGGCGCCACATTTA 61.600 50.000 37.14 17.27 41.06 1.40
566 2921 1.599606 TAAATGCCGGCGCCACATTT 61.600 50.000 38.30 38.30 44.09 2.32
567 2922 1.391157 ATAAATGCCGGCGCCACATT 61.391 50.000 29.56 29.56 35.59 2.71
568 2923 1.795170 GATAAATGCCGGCGCCACAT 61.795 55.000 28.98 25.42 0.00 3.21
569 2924 2.439338 ATAAATGCCGGCGCCACA 60.439 55.556 28.98 24.25 0.00 4.17
571 2926 1.315981 TTTGATAAATGCCGGCGCCA 61.316 50.000 28.98 7.49 0.00 5.69
572 2927 0.869880 GTTTGATAAATGCCGGCGCC 60.870 55.000 23.90 19.07 0.00 6.53
574 2929 0.591236 CGGTTTGATAAATGCCGGCG 60.591 55.000 23.90 0.00 38.86 6.46
575 2930 0.736053 TCGGTTTGATAAATGCCGGC 59.264 50.000 22.73 22.73 42.35 6.13
576 2931 2.223479 CCTTCGGTTTGATAAATGCCGG 60.223 50.000 0.00 0.00 42.35 6.13
577 2932 2.223479 CCCTTCGGTTTGATAAATGCCG 60.223 50.000 0.00 0.00 43.32 5.69
578 2933 2.481276 GCCCTTCGGTTTGATAAATGCC 60.481 50.000 0.00 0.00 0.00 4.40
579 2934 2.165437 TGCCCTTCGGTTTGATAAATGC 59.835 45.455 0.00 0.00 0.00 3.56
580 2935 4.499696 GGATGCCCTTCGGTTTGATAAATG 60.500 45.833 0.00 0.00 0.00 2.32
581 2936 3.636764 GGATGCCCTTCGGTTTGATAAAT 59.363 43.478 0.00 0.00 0.00 1.40
582 2937 3.020984 GGATGCCCTTCGGTTTGATAAA 58.979 45.455 0.00 0.00 0.00 1.40
583 2938 2.650322 GGATGCCCTTCGGTTTGATAA 58.350 47.619 0.00 0.00 0.00 1.75
584 2939 1.474320 CGGATGCCCTTCGGTTTGATA 60.474 52.381 0.00 0.00 0.00 2.15
585 2940 0.748005 CGGATGCCCTTCGGTTTGAT 60.748 55.000 0.00 0.00 0.00 2.57
586 2941 1.376683 CGGATGCCCTTCGGTTTGA 60.377 57.895 0.00 0.00 0.00 2.69
587 2942 3.051392 GCGGATGCCCTTCGGTTTG 62.051 63.158 0.00 0.00 33.98 2.93
588 2943 2.750237 GCGGATGCCCTTCGGTTT 60.750 61.111 0.00 0.00 33.98 3.27
589 2944 3.268103 AAGCGGATGCCCTTCGGTT 62.268 57.895 0.00 0.00 44.31 4.44
590 2945 3.717294 AAGCGGATGCCCTTCGGT 61.717 61.111 0.00 0.00 44.31 4.69
591 2946 3.204827 CAAGCGGATGCCCTTCGG 61.205 66.667 0.00 0.00 44.31 4.30
592 2947 3.880846 GCAAGCGGATGCCCTTCG 61.881 66.667 1.31 0.00 44.31 3.79
598 2953 4.189188 CTGCAGGCAAGCGGATGC 62.189 66.667 5.57 8.11 43.63 3.91
599 2954 4.189188 GCTGCAGGCAAGCGGATG 62.189 66.667 17.12 0.00 43.63 3.51
600 2955 4.421515 AGCTGCAGGCAAGCGGAT 62.422 61.111 17.12 5.39 43.63 4.18
603 2958 1.773054 CTATCAGCTGCAGGCAAGCG 61.773 60.000 17.12 0.00 44.79 4.68
604 2959 1.445716 CCTATCAGCTGCAGGCAAGC 61.446 60.000 17.12 0.36 44.79 4.01
605 2960 0.107312 ACCTATCAGCTGCAGGCAAG 60.107 55.000 25.78 10.54 44.79 4.01
606 2961 0.329261 AACCTATCAGCTGCAGGCAA 59.671 50.000 25.78 3.76 44.79 4.52
607 2962 0.393402 CAACCTATCAGCTGCAGGCA 60.393 55.000 25.78 4.46 44.79 4.75
608 2963 1.099879 CCAACCTATCAGCTGCAGGC 61.100 60.000 25.78 7.98 42.19 4.85
609 2964 1.099879 GCCAACCTATCAGCTGCAGG 61.100 60.000 24.78 24.78 35.45 4.85
666 3024 1.036707 AAGCCGAGATGGAGTCTAGC 58.963 55.000 0.00 0.00 42.00 3.42
669 3027 0.324738 TCCAAGCCGAGATGGAGTCT 60.325 55.000 0.00 0.00 40.74 3.24
888 3272 0.664166 GCTTGTTGTGTCCATTGGCG 60.664 55.000 0.00 0.00 0.00 5.69
946 3335 4.157120 GCGTGGTGATAGGGCCGT 62.157 66.667 2.24 2.24 0.00 5.68
1011 3407 0.543749 CTAGCTAGGCAGGCTTTGGT 59.456 55.000 13.32 4.23 40.74 3.67
1049 3445 1.590259 GATCGGGTCGAGCTTGAGC 60.590 63.158 22.64 22.64 39.28 4.26
1050 3446 4.719997 GATCGGGTCGAGCTTGAG 57.280 61.111 15.18 4.27 39.28 3.02
1080 3477 3.567797 GCCATCGTCGCCTGCTTC 61.568 66.667 0.00 0.00 0.00 3.86
1275 3678 4.101448 CGGAGGTTGGCTCCCCTG 62.101 72.222 0.00 0.00 37.71 4.45
1349 3752 2.769621 AGGGGATCTGCATGGCGA 60.770 61.111 0.00 0.00 0.00 5.54
1447 3850 4.624913 AGAGAGAGAGAGAGAGAGAAGGA 58.375 47.826 0.00 0.00 0.00 3.36
1448 3851 4.653341 AGAGAGAGAGAGAGAGAGAGAAGG 59.347 50.000 0.00 0.00 0.00 3.46
1449 3852 5.598005 AGAGAGAGAGAGAGAGAGAGAGAAG 59.402 48.000 0.00 0.00 0.00 2.85
1450 3853 5.523588 AGAGAGAGAGAGAGAGAGAGAGAA 58.476 45.833 0.00 0.00 0.00 2.87
1451 3854 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1452 3855 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1453 3856 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1454 3857 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1455 3858 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1456 3859 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1457 3860 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1458 3861 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1459 3862 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1460 3863 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1461 3864 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1462 3865 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1463 3866 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1464 3867 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1465 3868 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1466 3869 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1467 3870 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1468 3871 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1469 3872 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1470 3873 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1471 3874 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1472 3875 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1473 3876 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1474 3877 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1475 3878 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1476 3879 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1477 3880 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1478 3881 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1479 3882 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
1480 3883 5.867903 AAGAGAGAGAGAGAGAGAGAGAG 57.132 47.826 0.00 0.00 0.00 3.20
1481 3884 6.627087 AAAAGAGAGAGAGAGAGAGAGAGA 57.373 41.667 0.00 0.00 0.00 3.10
1482 3885 6.404074 GCAAAAAGAGAGAGAGAGAGAGAGAG 60.404 46.154 0.00 0.00 0.00 3.20
1483 3886 5.415701 GCAAAAAGAGAGAGAGAGAGAGAGA 59.584 44.000 0.00 0.00 0.00 3.10
1484 3887 5.183713 TGCAAAAAGAGAGAGAGAGAGAGAG 59.816 44.000 0.00 0.00 0.00 3.20
1485 3888 5.076182 TGCAAAAAGAGAGAGAGAGAGAGA 58.924 41.667 0.00 0.00 0.00 3.10
1486 3889 5.389859 TGCAAAAAGAGAGAGAGAGAGAG 57.610 43.478 0.00 0.00 0.00 3.20
1487 3890 5.999205 ATGCAAAAAGAGAGAGAGAGAGA 57.001 39.130 0.00 0.00 0.00 3.10
1488 3891 7.201548 GCTTAATGCAAAAAGAGAGAGAGAGAG 60.202 40.741 13.89 0.00 42.31 3.20
1491 3894 6.734104 GCTTAATGCAAAAAGAGAGAGAGA 57.266 37.500 13.89 0.00 42.31 3.10
1506 3909 2.529894 CACGCCGTTATTTGCTTAATGC 59.470 45.455 0.00 0.00 43.25 3.56
1552 3965 8.359060 ACTATAAAAGAAGAATCATCGCAGAC 57.641 34.615 0.00 0.00 42.51 3.51
1553 3966 8.948631 AACTATAAAAGAAGAATCATCGCAGA 57.051 30.769 0.00 0.00 45.75 4.26
1554 3967 8.000991 CGAACTATAAAAGAAGAATCATCGCAG 58.999 37.037 0.00 0.00 0.00 5.18
1555 3968 7.516785 GCGAACTATAAAAGAAGAATCATCGCA 60.517 37.037 0.00 0.00 45.96 5.10
1556 3969 6.787986 GCGAACTATAAAAGAAGAATCATCGC 59.212 38.462 0.00 0.00 41.77 4.58
1557 3970 6.998483 CGCGAACTATAAAAGAAGAATCATCG 59.002 38.462 0.00 0.00 0.00 3.84
1558 3971 7.042658 ACCGCGAACTATAAAAGAAGAATCATC 60.043 37.037 8.23 0.00 0.00 2.92
1559 3972 6.761714 ACCGCGAACTATAAAAGAAGAATCAT 59.238 34.615 8.23 0.00 0.00 2.45
1560 3973 6.103997 ACCGCGAACTATAAAAGAAGAATCA 58.896 36.000 8.23 0.00 0.00 2.57
1561 3974 6.585389 ACCGCGAACTATAAAAGAAGAATC 57.415 37.500 8.23 0.00 0.00 2.52
1562 3975 6.817140 AGAACCGCGAACTATAAAAGAAGAAT 59.183 34.615 8.23 0.00 0.00 2.40
1563 3976 6.161381 AGAACCGCGAACTATAAAAGAAGAA 58.839 36.000 8.23 0.00 0.00 2.52
1564 3977 5.717119 AGAACCGCGAACTATAAAAGAAGA 58.283 37.500 8.23 0.00 0.00 2.87
1565 3978 5.275788 CGAGAACCGCGAACTATAAAAGAAG 60.276 44.000 8.23 0.00 0.00 2.85
1566 3979 4.560035 CGAGAACCGCGAACTATAAAAGAA 59.440 41.667 8.23 0.00 0.00 2.52
1567 3980 4.100529 CGAGAACCGCGAACTATAAAAGA 58.899 43.478 8.23 0.00 0.00 2.52
1568 3981 4.100529 TCGAGAACCGCGAACTATAAAAG 58.899 43.478 8.23 0.00 38.37 2.27
1569 3982 4.095410 TCGAGAACCGCGAACTATAAAA 57.905 40.909 8.23 0.00 38.37 1.52
1570 3983 3.763097 TCGAGAACCGCGAACTATAAA 57.237 42.857 8.23 0.00 38.37 1.40
1571 3984 3.976793 ATCGAGAACCGCGAACTATAA 57.023 42.857 8.23 0.00 39.28 0.98
1572 3985 3.976793 AATCGAGAACCGCGAACTATA 57.023 42.857 8.23 0.00 39.28 1.31
1573 3986 2.865343 AATCGAGAACCGCGAACTAT 57.135 45.000 8.23 0.00 39.28 2.12
1607 4020 1.190763 ACATGCACGAACGTACGAAAC 59.809 47.619 24.41 11.22 37.03 2.78
1631 4044 1.909376 TTTGCACGACTAGCTCGATC 58.091 50.000 17.67 10.68 46.14 3.69
1688 4101 2.095110 CGACACACCGGTACAGAATACA 60.095 50.000 6.87 0.00 0.00 2.29
1689 4102 2.523015 CGACACACCGGTACAGAATAC 58.477 52.381 6.87 0.00 0.00 1.89
1690 4103 1.135315 GCGACACACCGGTACAGAATA 60.135 52.381 6.87 0.00 0.00 1.75
1691 4104 0.389426 GCGACACACCGGTACAGAAT 60.389 55.000 6.87 0.00 0.00 2.40
1692 4105 1.007038 GCGACACACCGGTACAGAA 60.007 57.895 6.87 0.00 0.00 3.02
1693 4106 2.646719 GCGACACACCGGTACAGA 59.353 61.111 6.87 0.00 0.00 3.41
1694 4107 2.431942 GGCGACACACCGGTACAG 60.432 66.667 6.87 2.05 0.00 2.74
1701 4114 4.367023 TACAGCCGGCGACACACC 62.367 66.667 23.20 0.00 0.00 4.16
1702 4115 3.110178 GTACAGCCGGCGACACAC 61.110 66.667 23.20 12.18 0.00 3.82
1703 4116 4.367023 GGTACAGCCGGCGACACA 62.367 66.667 23.20 2.60 0.00 3.72
1742 4155 0.042188 CAATGCACGGTAGCGTATGC 60.042 55.000 20.88 20.01 43.24 3.14
1743 4156 1.286501 ACAATGCACGGTAGCGTATG 58.713 50.000 20.88 17.54 37.31 2.39
1744 4157 2.018542 AACAATGCACGGTAGCGTAT 57.981 45.000 20.88 8.34 37.31 3.06
1745 4158 2.651135 TAACAATGCACGGTAGCGTA 57.349 45.000 20.88 5.96 37.31 4.42
1746 4159 1.663643 CATAACAATGCACGGTAGCGT 59.336 47.619 15.34 15.34 37.31 5.07
1747 4160 1.003972 CCATAACAATGCACGGTAGCG 60.004 52.381 13.69 13.69 37.31 4.26
1748 4161 2.285083 TCCATAACAATGCACGGTAGC 58.715 47.619 0.00 0.00 0.00 3.58
1749 4162 4.318760 CGATTCCATAACAATGCACGGTAG 60.319 45.833 0.00 0.00 0.00 3.18
1750 4163 3.558006 CGATTCCATAACAATGCACGGTA 59.442 43.478 0.00 0.00 0.00 4.02
1751 4164 2.354510 CGATTCCATAACAATGCACGGT 59.645 45.455 0.00 0.00 0.00 4.83
1752 4165 2.854424 GCGATTCCATAACAATGCACGG 60.854 50.000 0.00 0.00 0.00 4.94
1753 4166 2.223226 TGCGATTCCATAACAATGCACG 60.223 45.455 0.00 0.00 0.00 5.34
1754 4167 3.419264 TGCGATTCCATAACAATGCAC 57.581 42.857 0.00 0.00 0.00 4.57
1755 4168 4.609947 GAATGCGATTCCATAACAATGCA 58.390 39.130 0.00 0.00 33.17 3.96
1797 4210 5.346822 GCCAAAAGAAAATGTAGCTGATGTG 59.653 40.000 0.00 0.00 0.00 3.21
1876 4289 2.375345 CCCTTCCGGCTGGGTACAT 61.375 63.158 19.64 0.00 38.65 2.29
1956 4370 1.527611 ACAGGAGACGACGTGGACA 60.528 57.895 4.58 0.00 0.00 4.02
1963 4377 0.951040 CAAAGGCCACAGGAGACGAC 60.951 60.000 5.01 0.00 0.00 4.34
2090 4507 2.741486 TTTAAAGAGCCGCCACCGCT 62.741 55.000 0.00 0.00 0.00 5.52
2091 4508 2.253414 CTTTAAAGAGCCGCCACCGC 62.253 60.000 9.77 0.00 0.00 5.68
2092 4509 1.644786 CCTTTAAAGAGCCGCCACCG 61.645 60.000 16.98 0.00 0.00 4.94
2145 4564 1.185618 TGACGCTAGAAGCACCACCT 61.186 55.000 0.00 0.00 42.58 4.00
2167 4586 3.202818 AGACAAATATCCACATGCCCTCA 59.797 43.478 0.00 0.00 0.00 3.86
2181 4600 1.410004 AGATCCGCCGGAGACAAATA 58.590 50.000 13.12 0.00 34.05 1.40
2210 4629 0.037605 CCGAAGACAAACGCCTACCT 60.038 55.000 0.00 0.00 0.00 3.08
2261 4681 2.762745 ACCTGTAAACACACGATCACC 58.237 47.619 0.00 0.00 0.00 4.02
2265 4685 3.478857 TCCAACCTGTAAACACACGAT 57.521 42.857 0.00 0.00 0.00 3.73
2348 4768 0.613260 AAGTCATCGTGCTAAGGCCA 59.387 50.000 5.01 0.00 37.74 5.36
2435 4855 1.135859 CAAGCACTGAAATGAGCCGTC 60.136 52.381 0.00 0.00 0.00 4.79
2436 4856 0.877071 CAAGCACTGAAATGAGCCGT 59.123 50.000 0.00 0.00 0.00 5.68
2443 4863 2.987149 CGACGACTACAAGCACTGAAAT 59.013 45.455 0.00 0.00 0.00 2.17
2469 4889 9.872684 AAAATTACATCCAGATTCATAGACCAT 57.127 29.630 0.00 0.00 0.00 3.55
2564 4987 5.465724 GGGAAACTAGTTTCTGTACACAGTG 59.534 44.000 35.37 0.00 46.01 3.66
2566 4989 4.995487 GGGGAAACTAGTTTCTGTACACAG 59.005 45.833 35.37 2.84 46.01 3.66
2567 4990 4.409574 TGGGGAAACTAGTTTCTGTACACA 59.590 41.667 35.37 26.62 46.01 3.72
2568 4991 4.964593 TGGGGAAACTAGTTTCTGTACAC 58.035 43.478 35.37 24.86 46.01 2.90
2572 4997 9.816787 TTTTATTATGGGGAAACTAGTTTCTGT 57.183 29.630 35.37 24.15 46.01 3.41
2599 5024 8.830915 TCCAAAATGGTTTTATAAGCCATCTA 57.169 30.769 18.20 5.88 41.68 1.98
2646 5071 6.254281 TCCTTTAGTTGCACTTTCTTATGC 57.746 37.500 0.00 0.00 42.40 3.14
2691 5116 7.224297 ACTTTCCACTCATACTCTAGCAAAAA 58.776 34.615 0.00 0.00 0.00 1.94
2729 5154 2.403252 ACTGTTTATCCCGAGCTTGG 57.597 50.000 13.75 13.75 0.00 3.61
2731 5156 5.106830 CGTTTTTACTGTTTATCCCGAGCTT 60.107 40.000 0.00 0.00 0.00 3.74
2742 5177 8.463607 TCCATCTTTTTCTCGTTTTTACTGTTT 58.536 29.630 0.00 0.00 0.00 2.83
2790 5232 8.410030 CAAATCATTTGTCAAAGTTTCTCACA 57.590 30.769 1.53 0.00 35.94 3.58
2810 5252 9.142515 TGATGAAAATTGTCAAGCATACAAATC 57.857 29.630 1.55 0.00 40.05 2.17
2817 5260 5.471556 TGGTGATGAAAATTGTCAAGCAT 57.528 34.783 1.55 0.00 0.00 3.79
2828 5271 6.871844 TCAAAGTGTCATTTGGTGATGAAAA 58.128 32.000 0.00 0.00 39.99 2.29
2845 5288 4.572985 TCTTGCCATGACTTTCAAAGTG 57.427 40.909 7.75 0.00 43.03 3.16
2944 5387 4.834534 TGCAAAAATTCATCATGAAGGGG 58.165 39.130 6.19 0.00 40.05 4.79
2956 5399 5.388944 TGTTTTGTGTGCTTGCAAAAATTC 58.611 33.333 0.00 0.00 43.37 2.17
3007 5450 7.011950 GGAAAAAGAAAAATCAAAACATCCGGT 59.988 33.333 0.00 0.00 0.00 5.28
3008 5451 7.011857 TGGAAAAAGAAAAATCAAAACATCCGG 59.988 33.333 0.00 0.00 0.00 5.14
3009 5452 7.914465 TGGAAAAAGAAAAATCAAAACATCCG 58.086 30.769 0.00 0.00 0.00 4.18
3028 5471 9.185680 GCTCCCTAAGAATAGTAAAATGGAAAA 57.814 33.333 0.00 0.00 0.00 2.29
3033 5476 9.956720 CAAATGCTCCCTAAGAATAGTAAAATG 57.043 33.333 0.00 0.00 0.00 2.32
3070 5513 8.547481 TCTTATGGTTGGACATGAAGTATCTA 57.453 34.615 0.00 0.00 32.39 1.98
3078 5521 7.283127 GCTTAAGAATCTTATGGTTGGACATGA 59.717 37.037 6.67 0.00 32.39 3.07
3109 5552 2.447250 CATGCACGATCAAGCACATTC 58.553 47.619 10.84 0.00 44.49 2.67
3123 5566 1.103803 TCTAGTCTCCGTCCATGCAC 58.896 55.000 0.00 0.00 0.00 4.57
3175 5618 0.481567 CCCAGGGCATTGGATGATCT 59.518 55.000 8.68 0.00 40.87 2.75
3219 5662 0.035056 AGGAGAATGGTGAAAGCCGG 60.035 55.000 0.00 0.00 0.00 6.13
3232 5675 3.176411 TCCTTCTCTGATTGCAGGAGAA 58.824 45.455 16.62 16.62 42.53 2.87
3244 5687 4.709397 ACTGGAATGTAGTCTCCTTCTCTG 59.291 45.833 0.00 0.00 32.51 3.35
3253 5696 4.042187 AGGCTTTGAACTGGAATGTAGTCT 59.958 41.667 0.00 0.00 0.00 3.24
3259 5702 3.318839 TGTCAAGGCTTTGAACTGGAATG 59.681 43.478 13.42 0.00 44.49 2.67
3264 5707 4.376340 AAGTTGTCAAGGCTTTGAACTG 57.624 40.909 13.42 0.00 44.49 3.16
3269 5712 3.169355 AGCAAAGTTGTCAAGGCTTTG 57.831 42.857 17.97 17.97 46.83 2.77
3290 5733 1.279271 AGCTCGGGCATTACTTCTTGT 59.721 47.619 11.40 0.00 41.70 3.16
3301 5744 2.985282 CAGGCAAAAGCTCGGGCA 60.985 61.111 11.40 0.00 41.70 5.36
3302 5745 4.426112 GCAGGCAAAAGCTCGGGC 62.426 66.667 0.00 0.00 39.06 6.13
3325 5768 5.323900 GTGACATCCACAAATGTACATTCG 58.676 41.667 21.02 13.20 45.03 3.34
3393 5836 2.338500 GTGTGGCGGTTTCTCTTAGAG 58.662 52.381 2.23 2.23 0.00 2.43
3406 5849 1.769733 CATTCAACTTTGGTGTGGCG 58.230 50.000 0.00 0.00 0.00 5.69
3411 5854 2.886862 TGTGGCATTCAACTTTGGTG 57.113 45.000 0.00 0.00 0.00 4.17
3414 5857 3.236816 GTCGATGTGGCATTCAACTTTG 58.763 45.455 0.00 0.00 0.00 2.77
3417 5860 2.183478 TGTCGATGTGGCATTCAACT 57.817 45.000 0.00 0.00 0.00 3.16
3418 5861 2.419673 TGATGTCGATGTGGCATTCAAC 59.580 45.455 0.00 0.00 0.00 3.18
3468 5911 4.499188 CGAAAAGTGGAGATAGTGGCGATA 60.499 45.833 0.00 0.00 0.00 2.92
3479 5922 1.677552 GAGGCCCGAAAAGTGGAGA 59.322 57.895 0.00 0.00 0.00 3.71
3510 5953 1.758440 TTCGGCCTCTTGCTCAGTGT 61.758 55.000 0.00 0.00 40.92 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.