Multiple sequence alignment - TraesCS3D01G414000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G414000 chr3D 100.000 3560 0 0 1 3560 526053419 526049860 0.000000e+00 6575.0
1 TraesCS3D01G414000 chr3D 88.498 313 33 3 516 827 83725403 83725713 3.360000e-100 375.0
2 TraesCS3D01G414000 chr3D 87.859 313 36 2 516 827 579356196 579355885 2.020000e-97 366.0
3 TraesCS3D01G414000 chr3D 96.571 175 5 1 2631 2804 550509596 550509422 4.500000e-74 289.0
4 TraesCS3D01G414000 chr3D 93.048 187 12 1 2619 2804 396430344 396430158 4.530000e-69 272.0
5 TraesCS3D01G414000 chr3B 96.505 1774 52 9 860 2629 694328235 694326468 0.000000e+00 2924.0
6 TraesCS3D01G414000 chr3B 92.793 777 27 12 2794 3560 694326469 694325712 0.000000e+00 1098.0
7 TraesCS3D01G414000 chr3B 80.749 374 48 15 3048 3409 140590262 140589901 1.630000e-68 270.0
8 TraesCS3D01G414000 chr3B 88.889 54 5 1 467 520 486820428 486820376 8.250000e-07 65.8
9 TraesCS3D01G414000 chr3A 96.132 1784 56 8 857 2629 660240571 660238790 0.000000e+00 2900.0
10 TraesCS3D01G414000 chr3A 94.065 775 34 6 2794 3560 660238791 660238021 0.000000e+00 1166.0
11 TraesCS3D01G414000 chr1D 93.077 520 31 4 1 517 411727275 411727792 0.000000e+00 756.0
12 TraesCS3D01G414000 chr1D 89.557 316 30 3 516 830 163128272 163128585 7.160000e-107 398.0
13 TraesCS3D01G414000 chr1D 89.308 318 31 3 516 831 457038825 457038509 2.580000e-106 396.0
14 TraesCS3D01G414000 chr1D 95.455 176 8 0 2627 2802 128530641 128530466 7.520000e-72 281.0
15 TraesCS3D01G414000 chr1A 91.396 523 35 7 1 516 520359735 520359216 0.000000e+00 708.0
16 TraesCS3D01G414000 chr1A 90.267 524 33 9 1 520 531647110 531646601 0.000000e+00 669.0
17 TraesCS3D01G414000 chr1A 95.455 176 8 0 2628 2803 344464744 344464919 7.520000e-72 281.0
18 TraesCS3D01G414000 chr1B 88.292 521 53 4 1 518 94600547 94601062 5.050000e-173 617.0
19 TraesCS3D01G414000 chr6D 91.260 389 29 4 1 386 343128153 343127767 3.150000e-145 525.0
20 TraesCS3D01G414000 chr6D 96.023 176 7 0 2627 2802 27494483 27494658 1.620000e-73 287.0
21 TraesCS3D01G414000 chr6D 95.000 180 9 0 2616 2795 8921606 8921427 2.090000e-72 283.0
22 TraesCS3D01G414000 chr7B 84.586 519 54 14 1 516 617484841 617485336 3.190000e-135 492.0
23 TraesCS3D01G414000 chr4D 89.457 313 28 4 516 827 21167517 21167209 1.200000e-104 390.0
24 TraesCS3D01G414000 chr6B 88.854 314 32 3 516 828 594671586 594671275 2.010000e-102 383.0
25 TraesCS3D01G414000 chr6B 88.535 314 34 2 519 831 101713028 101712716 2.590000e-101 379.0
26 TraesCS3D01G414000 chr6B 90.566 53 4 1 467 519 207920115 207920064 6.380000e-08 69.4
27 TraesCS3D01G414000 chr6A 93.676 253 13 2 1 251 570915761 570916012 3.360000e-100 375.0
28 TraesCS3D01G414000 chr6A 97.633 169 4 0 2631 2799 420829503 420829335 1.250000e-74 291.0
29 TraesCS3D01G414000 chr7D 87.859 313 36 2 516 827 632407722 632407411 2.020000e-97 366.0
30 TraesCS3D01G414000 chr7D 82.210 371 40 15 3048 3409 162017339 162017692 2.690000e-76 296.0
31 TraesCS3D01G414000 chr7D 80.480 333 43 13 3087 3409 440588312 440588632 5.940000e-58 235.0
32 TraesCS3D01G414000 chr2D 86.604 321 39 4 516 834 498042396 498042078 5.650000e-93 351.0
33 TraesCS3D01G414000 chr2D 95.055 182 7 2 2621 2800 621263972 621264153 5.820000e-73 285.0
34 TraesCS3D01G414000 chr2A 90.323 248 16 4 1 246 137282757 137282998 5.740000e-83 318.0
35 TraesCS3D01G414000 chrUn 97.093 172 5 0 2630 2801 112299216 112299387 1.250000e-74 291.0
36 TraesCS3D01G414000 chrUn 82.353 204 33 3 1 203 178184100 178184301 1.310000e-39 174.0
37 TraesCS3D01G414000 chrUn 75.733 375 53 20 3048 3409 37387875 37388224 1.710000e-33 154.0
38 TraesCS3D01G414000 chr5A 81.744 367 50 8 3050 3409 580593290 580593646 1.250000e-74 291.0
39 TraesCS3D01G414000 chr7A 90.196 51 4 1 467 517 333962732 333962683 8.250000e-07 65.8
40 TraesCS3D01G414000 chr5D 92.683 41 3 0 3046 3086 109455088 109455128 3.840000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G414000 chr3D 526049860 526053419 3559 True 6575 6575 100.0000 1 3560 1 chr3D.!!$R2 3559
1 TraesCS3D01G414000 chr3B 694325712 694328235 2523 True 2011 2924 94.6490 860 3560 2 chr3B.!!$R3 2700
2 TraesCS3D01G414000 chr3A 660238021 660240571 2550 True 2033 2900 95.0985 857 3560 2 chr3A.!!$R1 2703
3 TraesCS3D01G414000 chr1D 411727275 411727792 517 False 756 756 93.0770 1 517 1 chr1D.!!$F2 516
4 TraesCS3D01G414000 chr1A 520359216 520359735 519 True 708 708 91.3960 1 516 1 chr1A.!!$R1 515
5 TraesCS3D01G414000 chr1A 531646601 531647110 509 True 669 669 90.2670 1 520 1 chr1A.!!$R2 519
6 TraesCS3D01G414000 chr1B 94600547 94601062 515 False 617 617 88.2920 1 518 1 chr1B.!!$F1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
843 861 0.034337 TCTAAGGCGTGTTCACACCC 59.966 55.0 4.48 6.94 43.66 4.61 F
850 868 0.179161 CGTGTTCACACCCGCAAAAA 60.179 50.0 4.48 0.00 43.66 1.94 F
1641 1666 0.466124 GGGATTCCTCTTCCTGGTCG 59.534 60.0 2.01 0.00 33.53 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1980 2005 0.327259 AAGCATTGAGAGCCTGCTCA 59.673 50.0 20.38 2.13 45.10 4.26 R
2474 2499 0.846427 TGCCTCCTCCCATTGTCCTT 60.846 55.0 0.00 0.00 0.00 3.36 R
2912 2939 2.787473 TTAGCCATGGTGAGTTCCAG 57.213 50.0 14.67 0.00 41.05 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 68 3.791973 GTTTGTGAACCATGTGAACCA 57.208 42.857 0.00 0.00 0.00 3.67
270 286 9.230122 TCATTACATTCAATATGTGACAGTGTT 57.770 29.630 0.00 0.00 35.39 3.32
272 288 6.882610 ACATTCAATATGTGACAGTGTTGT 57.117 33.333 0.00 0.00 41.18 3.32
346 362 2.357154 CCCAGAAAATCGAATGGACCCT 60.357 50.000 0.00 0.00 34.60 4.34
431 447 2.104530 GCCCGCGAGAAGAGGTAC 59.895 66.667 8.23 0.00 38.22 3.34
441 457 2.944349 GAGAAGAGGTACGATCGAAGGT 59.056 50.000 24.34 0.83 0.00 3.50
475 493 0.838987 GAGGAGGGGTGGTGTGGTAA 60.839 60.000 0.00 0.00 0.00 2.85
482 500 1.967779 GGGTGGTGTGGTAATTTTGCT 59.032 47.619 0.00 0.00 0.00 3.91
519 537 8.950210 CAGTTGACAAATATCACAGTCCTTATT 58.050 33.333 0.00 0.00 0.00 1.40
520 538 9.167311 AGTTGACAAATATCACAGTCCTTATTC 57.833 33.333 0.00 0.00 0.00 1.75
521 539 7.770801 TGACAAATATCACAGTCCTTATTCG 57.229 36.000 0.00 0.00 0.00 3.34
522 540 7.327975 TGACAAATATCACAGTCCTTATTCGT 58.672 34.615 0.00 0.00 0.00 3.85
523 541 8.471609 TGACAAATATCACAGTCCTTATTCGTA 58.528 33.333 0.00 0.00 0.00 3.43
524 542 9.309516 GACAAATATCACAGTCCTTATTCGTAA 57.690 33.333 0.00 0.00 0.00 3.18
525 543 9.832445 ACAAATATCACAGTCCTTATTCGTAAT 57.168 29.630 0.00 0.00 0.00 1.89
527 545 9.832445 AAATATCACAGTCCTTATTCGTAATGT 57.168 29.630 0.00 0.00 0.00 2.71
528 546 8.818141 ATATCACAGTCCTTATTCGTAATGTG 57.182 34.615 0.00 0.00 38.46 3.21
529 547 5.416083 TCACAGTCCTTATTCGTAATGTGG 58.584 41.667 0.00 0.00 37.85 4.17
530 548 5.186215 TCACAGTCCTTATTCGTAATGTGGA 59.814 40.000 0.00 0.00 37.85 4.02
531 549 6.049149 CACAGTCCTTATTCGTAATGTGGAT 58.951 40.000 0.00 0.00 34.58 3.41
532 550 6.018751 CACAGTCCTTATTCGTAATGTGGATG 60.019 42.308 0.00 0.00 34.58 3.51
533 551 6.127168 ACAGTCCTTATTCGTAATGTGGATGA 60.127 38.462 0.00 0.00 0.00 2.92
534 552 6.931281 CAGTCCTTATTCGTAATGTGGATGAT 59.069 38.462 0.00 0.00 0.00 2.45
535 553 7.442364 CAGTCCTTATTCGTAATGTGGATGATT 59.558 37.037 0.00 0.00 0.00 2.57
536 554 7.442364 AGTCCTTATTCGTAATGTGGATGATTG 59.558 37.037 0.00 0.00 0.00 2.67
537 555 7.226720 GTCCTTATTCGTAATGTGGATGATTGT 59.773 37.037 0.00 0.00 0.00 2.71
538 556 7.773224 TCCTTATTCGTAATGTGGATGATTGTT 59.227 33.333 0.00 0.00 0.00 2.83
539 557 7.857389 CCTTATTCGTAATGTGGATGATTGTTG 59.143 37.037 0.00 0.00 0.00 3.33
540 558 6.757897 ATTCGTAATGTGGATGATTGTTGT 57.242 33.333 0.00 0.00 0.00 3.32
541 559 7.857734 ATTCGTAATGTGGATGATTGTTGTA 57.142 32.000 0.00 0.00 0.00 2.41
542 560 7.857734 TTCGTAATGTGGATGATTGTTGTAT 57.142 32.000 0.00 0.00 0.00 2.29
543 561 7.857734 TCGTAATGTGGATGATTGTTGTATT 57.142 32.000 0.00 0.00 0.00 1.89
544 562 7.693020 TCGTAATGTGGATGATTGTTGTATTG 58.307 34.615 0.00 0.00 0.00 1.90
545 563 7.335673 TCGTAATGTGGATGATTGTTGTATTGT 59.664 33.333 0.00 0.00 0.00 2.71
546 564 7.429051 CGTAATGTGGATGATTGTTGTATTGTG 59.571 37.037 0.00 0.00 0.00 3.33
547 565 6.839124 ATGTGGATGATTGTTGTATTGTGT 57.161 33.333 0.00 0.00 0.00 3.72
548 566 6.647334 TGTGGATGATTGTTGTATTGTGTT 57.353 33.333 0.00 0.00 0.00 3.32
549 567 6.445475 TGTGGATGATTGTTGTATTGTGTTG 58.555 36.000 0.00 0.00 0.00 3.33
550 568 5.863397 GTGGATGATTGTTGTATTGTGTTGG 59.137 40.000 0.00 0.00 0.00 3.77
551 569 5.538053 TGGATGATTGTTGTATTGTGTTGGT 59.462 36.000 0.00 0.00 0.00 3.67
552 570 6.717084 TGGATGATTGTTGTATTGTGTTGGTA 59.283 34.615 0.00 0.00 0.00 3.25
553 571 7.395772 TGGATGATTGTTGTATTGTGTTGGTAT 59.604 33.333 0.00 0.00 0.00 2.73
554 572 8.250332 GGATGATTGTTGTATTGTGTTGGTATT 58.750 33.333 0.00 0.00 0.00 1.89
555 573 8.984891 ATGATTGTTGTATTGTGTTGGTATTG 57.015 30.769 0.00 0.00 0.00 1.90
556 574 8.171164 TGATTGTTGTATTGTGTTGGTATTGA 57.829 30.769 0.00 0.00 0.00 2.57
557 575 8.801299 TGATTGTTGTATTGTGTTGGTATTGAT 58.199 29.630 0.00 0.00 0.00 2.57
608 626 9.859427 AGTATGGATGATTGTTGTATTTTTGTG 57.141 29.630 0.00 0.00 0.00 3.33
609 627 9.086336 GTATGGATGATTGTTGTATTTTTGTGG 57.914 33.333 0.00 0.00 0.00 4.17
610 628 7.060383 TGGATGATTGTTGTATTTTTGTGGT 57.940 32.000 0.00 0.00 0.00 4.16
611 629 6.927936 TGGATGATTGTTGTATTTTTGTGGTG 59.072 34.615 0.00 0.00 0.00 4.17
612 630 6.928492 GGATGATTGTTGTATTTTTGTGGTGT 59.072 34.615 0.00 0.00 0.00 4.16
613 631 7.095691 GGATGATTGTTGTATTTTTGTGGTGTG 60.096 37.037 0.00 0.00 0.00 3.82
614 632 6.045318 TGATTGTTGTATTTTTGTGGTGTGG 58.955 36.000 0.00 0.00 0.00 4.17
615 633 5.407407 TTGTTGTATTTTTGTGGTGTGGT 57.593 34.783 0.00 0.00 0.00 4.16
616 634 6.525578 TTGTTGTATTTTTGTGGTGTGGTA 57.474 33.333 0.00 0.00 0.00 3.25
617 635 6.716934 TGTTGTATTTTTGTGGTGTGGTAT 57.283 33.333 0.00 0.00 0.00 2.73
618 636 7.113658 TGTTGTATTTTTGTGGTGTGGTATT 57.886 32.000 0.00 0.00 0.00 1.89
619 637 6.980978 TGTTGTATTTTTGTGGTGTGGTATTG 59.019 34.615 0.00 0.00 0.00 1.90
620 638 6.961360 TGTATTTTTGTGGTGTGGTATTGA 57.039 33.333 0.00 0.00 0.00 2.57
621 639 7.531857 TGTATTTTTGTGGTGTGGTATTGAT 57.468 32.000 0.00 0.00 0.00 2.57
622 640 8.637196 TGTATTTTTGTGGTGTGGTATTGATA 57.363 30.769 0.00 0.00 0.00 2.15
623 641 9.249053 TGTATTTTTGTGGTGTGGTATTGATAT 57.751 29.630 0.00 0.00 0.00 1.63
627 645 9.915629 TTTTTGTGGTGTGGTATTGATATTTAC 57.084 29.630 0.00 0.00 0.00 2.01
628 646 6.912203 TGTGGTGTGGTATTGATATTTACG 57.088 37.500 0.00 0.00 0.00 3.18
629 647 5.818336 TGTGGTGTGGTATTGATATTTACGG 59.182 40.000 0.00 0.00 0.00 4.02
630 648 6.050432 GTGGTGTGGTATTGATATTTACGGA 58.950 40.000 0.00 0.00 0.00 4.69
631 649 6.018507 GTGGTGTGGTATTGATATTTACGGAC 60.019 42.308 0.00 0.00 0.00 4.79
632 650 5.467735 GGTGTGGTATTGATATTTACGGACC 59.532 44.000 0.00 0.00 0.00 4.46
633 651 5.467735 GTGTGGTATTGATATTTACGGACCC 59.532 44.000 0.00 0.00 0.00 4.46
634 652 4.687483 GTGGTATTGATATTTACGGACCCG 59.313 45.833 6.94 6.94 46.03 5.28
635 653 3.681417 GGTATTGATATTTACGGACCCGC 59.319 47.826 8.55 0.00 44.19 6.13
636 654 1.855513 TTGATATTTACGGACCCGCG 58.144 50.000 8.55 0.00 44.19 6.46
637 655 0.598158 TGATATTTACGGACCCGCGC 60.598 55.000 8.55 0.00 44.19 6.86
638 656 0.598158 GATATTTACGGACCCGCGCA 60.598 55.000 8.75 0.00 44.19 6.09
639 657 0.599204 ATATTTACGGACCCGCGCAG 60.599 55.000 8.75 0.00 44.19 5.18
652 670 3.043713 CGCAGCGGCACAAGAGAA 61.044 61.111 7.00 0.00 41.24 2.87
653 671 2.866028 GCAGCGGCACAAGAGAAG 59.134 61.111 3.18 0.00 40.72 2.85
654 672 1.669115 GCAGCGGCACAAGAGAAGA 60.669 57.895 3.18 0.00 40.72 2.87
655 673 1.905922 GCAGCGGCACAAGAGAAGAC 61.906 60.000 3.18 0.00 40.72 3.01
656 674 1.004440 AGCGGCACAAGAGAAGACC 60.004 57.895 1.45 0.00 0.00 3.85
657 675 2.035442 GCGGCACAAGAGAAGACCC 61.035 63.158 0.00 0.00 0.00 4.46
658 676 1.376037 CGGCACAAGAGAAGACCCC 60.376 63.158 0.00 0.00 0.00 4.95
659 677 1.376037 GGCACAAGAGAAGACCCCG 60.376 63.158 0.00 0.00 0.00 5.73
660 678 1.376037 GCACAAGAGAAGACCCCGG 60.376 63.158 0.00 0.00 0.00 5.73
661 679 1.827399 GCACAAGAGAAGACCCCGGA 61.827 60.000 0.73 0.00 0.00 5.14
662 680 0.685097 CACAAGAGAAGACCCCGGAA 59.315 55.000 0.73 0.00 0.00 4.30
663 681 1.071699 CACAAGAGAAGACCCCGGAAA 59.928 52.381 0.73 0.00 0.00 3.13
664 682 1.348036 ACAAGAGAAGACCCCGGAAAG 59.652 52.381 0.73 0.00 0.00 2.62
665 683 0.325272 AAGAGAAGACCCCGGAAAGC 59.675 55.000 0.73 0.00 0.00 3.51
666 684 1.078356 GAGAAGACCCCGGAAAGCC 60.078 63.158 0.73 0.00 0.00 4.35
676 694 2.360225 GGAAAGCCGGCCCGTAAA 60.360 61.111 26.15 0.00 0.00 2.01
677 695 1.972752 GGAAAGCCGGCCCGTAAAA 60.973 57.895 26.15 0.00 0.00 1.52
678 696 1.504900 GAAAGCCGGCCCGTAAAAG 59.495 57.895 26.15 0.00 0.00 2.27
679 697 0.956902 GAAAGCCGGCCCGTAAAAGA 60.957 55.000 26.15 0.00 0.00 2.52
680 698 0.958876 AAAGCCGGCCCGTAAAAGAG 60.959 55.000 26.15 0.00 0.00 2.85
681 699 2.046604 GCCGGCCCGTAAAAGAGT 60.047 61.111 18.11 0.00 0.00 3.24
682 700 1.218854 GCCGGCCCGTAAAAGAGTA 59.781 57.895 18.11 0.00 0.00 2.59
683 701 0.179065 GCCGGCCCGTAAAAGAGTAT 60.179 55.000 18.11 0.00 0.00 2.12
684 702 1.069049 GCCGGCCCGTAAAAGAGTATA 59.931 52.381 18.11 0.00 0.00 1.47
685 703 2.289257 GCCGGCCCGTAAAAGAGTATAT 60.289 50.000 18.11 0.00 0.00 0.86
686 704 3.804759 GCCGGCCCGTAAAAGAGTATATT 60.805 47.826 18.11 0.00 0.00 1.28
687 705 3.992427 CCGGCCCGTAAAAGAGTATATTC 59.008 47.826 0.85 0.00 0.00 1.75
688 706 3.671928 CGGCCCGTAAAAGAGTATATTCG 59.328 47.826 0.00 0.00 0.00 3.34
689 707 4.557296 CGGCCCGTAAAAGAGTATATTCGA 60.557 45.833 0.00 0.00 0.00 3.71
690 708 4.683320 GGCCCGTAAAAGAGTATATTCGAC 59.317 45.833 0.00 0.00 0.00 4.20
691 709 4.380974 GCCCGTAAAAGAGTATATTCGACG 59.619 45.833 0.00 0.00 0.00 5.12
692 710 5.751680 CCCGTAAAAGAGTATATTCGACGA 58.248 41.667 12.87 0.00 0.00 4.20
693 711 6.201517 CCCGTAAAAGAGTATATTCGACGAA 58.798 40.000 13.48 13.48 0.00 3.85
694 712 6.860023 CCCGTAAAAGAGTATATTCGACGAAT 59.140 38.462 25.06 25.06 36.20 3.34
695 713 8.017373 CCCGTAAAAGAGTATATTCGACGAATA 58.983 37.037 27.40 27.40 38.61 1.75
696 714 9.552114 CCGTAAAAGAGTATATTCGACGAATAT 57.448 33.333 33.68 33.68 44.35 1.28
709 727 7.627585 TTCGACGAATATTCTTTTATACGGG 57.372 36.000 13.45 0.00 0.00 5.28
710 728 6.738114 TCGACGAATATTCTTTTATACGGGT 58.262 36.000 13.45 0.02 0.00 5.28
711 729 6.857964 TCGACGAATATTCTTTTATACGGGTC 59.142 38.462 13.45 7.96 0.00 4.46
712 730 6.088616 CGACGAATATTCTTTTATACGGGTCC 59.911 42.308 13.45 0.00 0.00 4.46
713 731 5.922544 ACGAATATTCTTTTATACGGGTCCG 59.077 40.000 13.45 7.97 46.03 4.79
729 747 2.485122 CGTTTTGCGGGATCTGCC 59.515 61.111 7.80 0.00 36.85 4.85
730 748 2.040544 CGTTTTGCGGGATCTGCCT 61.041 57.895 7.80 0.00 36.66 4.75
731 749 1.803289 GTTTTGCGGGATCTGCCTC 59.197 57.895 7.80 0.00 36.66 4.70
732 750 0.678048 GTTTTGCGGGATCTGCCTCT 60.678 55.000 7.80 0.00 36.66 3.69
733 751 0.677731 TTTTGCGGGATCTGCCTCTG 60.678 55.000 7.80 0.00 36.66 3.35
734 752 3.687321 TTGCGGGATCTGCCTCTGC 62.687 63.158 7.80 1.08 36.66 4.26
736 754 4.598894 CGGGATCTGCCTCTGCGG 62.599 72.222 0.00 0.00 45.75 5.69
766 784 3.443588 GGCCTCAAAGCCGTGTTT 58.556 55.556 0.00 0.00 44.57 2.83
767 785 1.285950 GGCCTCAAAGCCGTGTTTC 59.714 57.895 0.00 0.00 44.57 2.78
768 786 1.285950 GCCTCAAAGCCGTGTTTCC 59.714 57.895 0.00 0.00 0.00 3.13
769 787 1.574428 CCTCAAAGCCGTGTTTCCG 59.426 57.895 0.00 0.00 0.00 4.30
770 788 1.082104 CTCAAAGCCGTGTTTCCGC 60.082 57.895 0.00 0.00 0.00 5.54
771 789 2.426752 CAAAGCCGTGTTTCCGCG 60.427 61.111 0.00 0.00 44.04 6.46
778 796 3.018973 GTGTTTCCGCGAACTGCA 58.981 55.556 8.23 0.00 46.97 4.41
779 797 1.353804 GTGTTTCCGCGAACTGCAA 59.646 52.632 8.23 0.00 46.97 4.08
780 798 0.248296 GTGTTTCCGCGAACTGCAAA 60.248 50.000 8.23 0.00 46.97 3.68
781 799 0.248296 TGTTTCCGCGAACTGCAAAC 60.248 50.000 8.23 7.19 46.97 2.93
782 800 1.010574 TTTCCGCGAACTGCAAACG 60.011 52.632 8.23 0.00 46.97 3.60
783 801 2.975167 TTTCCGCGAACTGCAAACGC 62.975 55.000 8.23 17.60 46.97 4.84
786 804 2.351888 GCGAACTGCAAACGCGTT 60.352 55.556 20.79 20.79 45.45 4.84
787 805 1.937362 GCGAACTGCAAACGCGTTT 60.937 52.632 30.36 30.36 45.45 3.60
788 806 1.468340 GCGAACTGCAAACGCGTTTT 61.468 50.000 33.05 19.44 45.45 2.43
789 807 0.223513 CGAACTGCAAACGCGTTTTG 59.776 50.000 33.05 26.38 46.57 2.44
794 812 4.393308 CAAACGCGTTTTGCTGGT 57.607 50.000 33.05 9.53 43.27 4.00
795 813 2.203599 CAAACGCGTTTTGCTGGTC 58.796 52.632 33.05 0.00 43.27 4.02
796 814 1.298041 AAACGCGTTTTGCTGGTCG 60.298 52.632 30.36 0.00 43.27 4.79
797 815 2.655952 AAACGCGTTTTGCTGGTCGG 62.656 55.000 30.36 0.00 43.27 4.79
800 818 3.645975 CGTTTTGCTGGTCGGCGT 61.646 61.111 6.85 0.00 34.52 5.68
801 819 2.719354 GTTTTGCTGGTCGGCGTT 59.281 55.556 6.85 0.00 34.52 4.84
802 820 1.833434 CGTTTTGCTGGTCGGCGTTA 61.833 55.000 6.85 0.00 34.52 3.18
803 821 0.519961 GTTTTGCTGGTCGGCGTTAT 59.480 50.000 6.85 0.00 34.52 1.89
804 822 0.519519 TTTTGCTGGTCGGCGTTATG 59.480 50.000 6.85 0.00 34.52 1.90
805 823 1.917782 TTTGCTGGTCGGCGTTATGC 61.918 55.000 6.85 8.68 45.38 3.14
822 840 2.494918 CGGGGTCCGCTAGAGTTG 59.505 66.667 4.18 0.00 41.17 3.16
823 841 2.187163 GGGGTCCGCTAGAGTTGC 59.813 66.667 0.00 0.00 0.00 4.17
824 842 2.359967 GGGGTCCGCTAGAGTTGCT 61.360 63.158 0.00 0.00 0.00 3.91
825 843 1.142097 GGGTCCGCTAGAGTTGCTC 59.858 63.158 0.00 0.00 0.00 4.26
826 844 1.324005 GGGTCCGCTAGAGTTGCTCT 61.324 60.000 4.02 4.02 43.83 4.09
827 845 1.390565 GGTCCGCTAGAGTTGCTCTA 58.609 55.000 0.00 5.84 41.50 2.43
828 846 1.749634 GGTCCGCTAGAGTTGCTCTAA 59.250 52.381 7.22 0.00 41.74 2.10
829 847 2.223618 GGTCCGCTAGAGTTGCTCTAAG 60.224 54.545 7.22 4.91 41.74 2.18
830 848 2.025155 TCCGCTAGAGTTGCTCTAAGG 58.975 52.381 15.30 15.30 41.74 2.69
831 849 1.537135 CCGCTAGAGTTGCTCTAAGGC 60.537 57.143 7.22 7.16 41.74 4.35
832 850 1.846541 GCTAGAGTTGCTCTAAGGCG 58.153 55.000 7.22 0.00 41.74 5.52
833 851 1.135333 GCTAGAGTTGCTCTAAGGCGT 59.865 52.381 7.22 0.00 41.74 5.68
834 852 2.803451 CTAGAGTTGCTCTAAGGCGTG 58.197 52.381 7.22 0.00 41.74 5.34
835 853 0.969894 AGAGTTGCTCTAAGGCGTGT 59.030 50.000 0.00 0.00 39.28 4.49
836 854 1.344763 AGAGTTGCTCTAAGGCGTGTT 59.655 47.619 0.00 0.00 39.28 3.32
837 855 1.727335 GAGTTGCTCTAAGGCGTGTTC 59.273 52.381 0.00 0.00 34.52 3.18
838 856 1.070134 AGTTGCTCTAAGGCGTGTTCA 59.930 47.619 0.00 0.00 34.52 3.18
839 857 1.194772 GTTGCTCTAAGGCGTGTTCAC 59.805 52.381 0.00 0.00 34.52 3.18
840 858 0.391228 TGCTCTAAGGCGTGTTCACA 59.609 50.000 3.87 0.00 34.52 3.58
841 859 0.790814 GCTCTAAGGCGTGTTCACAC 59.209 55.000 0.00 0.00 43.15 3.82
842 860 1.429463 CTCTAAGGCGTGTTCACACC 58.571 55.000 4.48 2.19 43.66 4.16
843 861 0.034337 TCTAAGGCGTGTTCACACCC 59.966 55.000 4.48 6.94 43.66 4.61
844 862 1.289109 CTAAGGCGTGTTCACACCCG 61.289 60.000 4.48 0.00 43.66 5.28
847 865 3.578272 GCGTGTTCACACCCGCAA 61.578 61.111 9.38 0.00 43.66 4.85
848 866 3.102985 CGTGTTCACACCCGCAAA 58.897 55.556 4.48 0.00 43.66 3.68
849 867 1.429825 CGTGTTCACACCCGCAAAA 59.570 52.632 4.48 0.00 43.66 2.44
850 868 0.179161 CGTGTTCACACCCGCAAAAA 60.179 50.000 4.48 0.00 43.66 1.94
898 916 2.260247 TCCGACTTACTGGACCGTG 58.740 57.895 0.00 0.00 0.00 4.94
927 945 2.027100 GCCCAGGAGTACTAACAAAGCT 60.027 50.000 0.00 0.00 0.00 3.74
928 946 3.559384 GCCCAGGAGTACTAACAAAGCTT 60.559 47.826 0.00 0.00 0.00 3.74
948 966 4.559300 GCTTAATCTGCAAGTTGAAAGCCA 60.559 41.667 7.16 0.00 33.07 4.75
1026 1051 1.674322 CCGACCAAACCGCAATCCT 60.674 57.895 0.00 0.00 0.00 3.24
1029 1054 0.953960 GACCAAACCGCAATCCTCGT 60.954 55.000 0.00 0.00 0.00 4.18
1267 1292 3.311110 TCCCCTTCGCGCTCAACT 61.311 61.111 5.56 0.00 0.00 3.16
1526 1551 0.622665 CTCTTCACCTCCATGCCCTT 59.377 55.000 0.00 0.00 0.00 3.95
1533 1558 0.745845 CCTCCATGCCCTTCAGAACG 60.746 60.000 0.00 0.00 0.00 3.95
1641 1666 0.466124 GGGATTCCTCTTCCTGGTCG 59.534 60.000 2.01 0.00 33.53 4.79
1671 1696 2.192664 TTGGATACTGCAAAAGCGGA 57.807 45.000 2.93 0.00 37.61 5.54
1980 2005 0.899717 ATGCCAAGTGCGGGAATGTT 60.900 50.000 0.00 0.00 45.60 2.71
2079 2104 1.002746 TCATGGGCACGCAAAGCTA 60.003 52.632 0.00 0.00 0.00 3.32
2108 2133 0.874390 GTGTTTGAGCGGATGCAAGA 59.126 50.000 0.00 0.00 46.23 3.02
2142 2167 2.233922 ACCTGATCCGATCACTTTCGTT 59.766 45.455 7.00 0.00 37.42 3.85
2244 2269 1.144057 GAACCGTCGGGCAGATCAT 59.856 57.895 17.28 0.00 36.48 2.45
2259 2284 4.142315 GCAGATCATTATGCCTGTGTTGTT 60.142 41.667 13.01 0.00 36.41 2.83
2289 2314 2.032528 CGTGCAGGGAGGCTTGAA 59.967 61.111 0.00 0.00 34.04 2.69
2474 2499 4.082190 GCTGTCGAGTATATATGCTGGGAA 60.082 45.833 8.17 0.00 0.00 3.97
2503 2528 2.188817 GGGAGGAGGCAGAAAGAGTTA 58.811 52.381 0.00 0.00 0.00 2.24
2583 2609 3.013932 AGAGGGAGCAAGGCAGGG 61.014 66.667 0.00 0.00 0.00 4.45
2610 2637 1.163554 GAGGAGCTGAAAAGCACCAG 58.836 55.000 15.13 0.00 45.89 4.00
2635 2662 6.803154 AACATTTCTGTTTGCTACTACTCC 57.197 37.500 0.00 0.00 43.05 3.85
2636 2663 5.246307 ACATTTCTGTTTGCTACTACTCCC 58.754 41.667 0.00 0.00 28.70 4.30
2637 2664 5.013183 ACATTTCTGTTTGCTACTACTCCCT 59.987 40.000 0.00 0.00 28.70 4.20
2638 2665 4.803098 TTCTGTTTGCTACTACTCCCTC 57.197 45.455 0.00 0.00 0.00 4.30
2639 2666 3.097614 TCTGTTTGCTACTACTCCCTCC 58.902 50.000 0.00 0.00 0.00 4.30
2640 2667 1.822990 TGTTTGCTACTACTCCCTCCG 59.177 52.381 0.00 0.00 0.00 4.63
2641 2668 1.823610 GTTTGCTACTACTCCCTCCGT 59.176 52.381 0.00 0.00 0.00 4.69
2642 2669 2.226962 TTGCTACTACTCCCTCCGTT 57.773 50.000 0.00 0.00 0.00 4.44
2643 2670 2.226962 TGCTACTACTCCCTCCGTTT 57.773 50.000 0.00 0.00 0.00 3.60
2644 2671 2.097825 TGCTACTACTCCCTCCGTTTC 58.902 52.381 0.00 0.00 0.00 2.78
2645 2672 2.291411 TGCTACTACTCCCTCCGTTTCT 60.291 50.000 0.00 0.00 0.00 2.52
2646 2673 3.054139 TGCTACTACTCCCTCCGTTTCTA 60.054 47.826 0.00 0.00 0.00 2.10
2647 2674 3.950395 GCTACTACTCCCTCCGTTTCTAA 59.050 47.826 0.00 0.00 0.00 2.10
2648 2675 4.400567 GCTACTACTCCCTCCGTTTCTAAA 59.599 45.833 0.00 0.00 0.00 1.85
2649 2676 5.068855 GCTACTACTCCCTCCGTTTCTAAAT 59.931 44.000 0.00 0.00 0.00 1.40
2650 2677 6.264067 GCTACTACTCCCTCCGTTTCTAAATA 59.736 42.308 0.00 0.00 0.00 1.40
2651 2678 7.039853 GCTACTACTCCCTCCGTTTCTAAATAT 60.040 40.741 0.00 0.00 0.00 1.28
2652 2679 9.512588 CTACTACTCCCTCCGTTTCTAAATATA 57.487 37.037 0.00 0.00 0.00 0.86
2653 2680 8.773033 ACTACTCCCTCCGTTTCTAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
2654 2681 8.858094 ACTACTCCCTCCGTTTCTAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
2655 2682 7.672122 ACTCCCTCCGTTTCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
2656 2683 7.724287 ACTCCCTCCGTTTCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
2657 2684 7.564292 ACTCCCTCCGTTTCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
2658 2685 8.315220 TCCCTCCGTTTCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
2659 2686 8.765517 TCCCTCCGTTTCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
2660 2687 9.392259 CCCTCCGTTTCTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
2688 2715 8.873830 AGAGATTTCAACAAATGACTACATACG 58.126 33.333 0.00 0.00 37.92 3.06
2689 2716 7.974675 AGATTTCAACAAATGACTACATACGG 58.025 34.615 0.00 0.00 37.92 4.02
2690 2717 7.822334 AGATTTCAACAAATGACTACATACGGA 59.178 33.333 0.00 0.00 37.92 4.69
2691 2718 6.961359 TTCAACAAATGACTACATACGGAG 57.039 37.500 0.00 0.00 37.92 4.63
2692 2719 4.868171 TCAACAAATGACTACATACGGAGC 59.132 41.667 0.00 0.00 35.50 4.70
2693 2720 4.465632 ACAAATGACTACATACGGAGCA 57.534 40.909 0.00 0.00 35.50 4.26
2694 2721 4.827692 ACAAATGACTACATACGGAGCAA 58.172 39.130 0.00 0.00 35.50 3.91
2695 2722 5.242434 ACAAATGACTACATACGGAGCAAA 58.758 37.500 0.00 0.00 35.50 3.68
2696 2723 5.703592 ACAAATGACTACATACGGAGCAAAA 59.296 36.000 0.00 0.00 35.50 2.44
2697 2724 6.374333 ACAAATGACTACATACGGAGCAAAAT 59.626 34.615 0.00 0.00 35.50 1.82
2698 2725 5.991328 ATGACTACATACGGAGCAAAATG 57.009 39.130 0.00 0.00 34.71 2.32
2699 2726 5.079689 TGACTACATACGGAGCAAAATGA 57.920 39.130 0.00 0.00 0.00 2.57
2700 2727 5.109210 TGACTACATACGGAGCAAAATGAG 58.891 41.667 0.00 0.00 0.00 2.90
2701 2728 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2702 2729 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2703 2730 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2704 2731 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2705 2732 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2706 2733 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2707 2734 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2708 2735 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2709 2736 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2710 2737 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2711 2738 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2750 2777 5.838529 CATACATCCGTATGTTGTAGTCCA 58.161 41.667 0.00 0.00 46.70 4.02
2751 2778 6.455647 CATACATCCGTATGTTGTAGTCCAT 58.544 40.000 0.00 0.00 46.70 3.41
2752 2779 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
2753 2780 5.741011 ACATCCGTATGTTGTAGTCCATTT 58.259 37.500 0.00 0.00 44.07 2.32
2754 2781 5.584649 ACATCCGTATGTTGTAGTCCATTTG 59.415 40.000 0.00 0.00 44.07 2.32
2755 2782 5.408880 TCCGTATGTTGTAGTCCATTTGA 57.591 39.130 0.00 0.00 0.00 2.69
2756 2783 5.795972 TCCGTATGTTGTAGTCCATTTGAA 58.204 37.500 0.00 0.00 0.00 2.69
2757 2784 6.231951 TCCGTATGTTGTAGTCCATTTGAAA 58.768 36.000 0.00 0.00 0.00 2.69
2758 2785 6.882140 TCCGTATGTTGTAGTCCATTTGAAAT 59.118 34.615 0.00 0.00 0.00 2.17
2759 2786 6.966632 CCGTATGTTGTAGTCCATTTGAAATG 59.033 38.462 10.84 10.84 0.00 2.32
2760 2787 7.361713 CCGTATGTTGTAGTCCATTTGAAATGT 60.362 37.037 15.93 1.43 0.00 2.71
2761 2788 7.692291 CGTATGTTGTAGTCCATTTGAAATGTC 59.308 37.037 15.93 9.10 0.00 3.06
2762 2789 7.765695 ATGTTGTAGTCCATTTGAAATGTCT 57.234 32.000 15.93 14.81 0.00 3.41
2763 2790 8.862325 ATGTTGTAGTCCATTTGAAATGTCTA 57.138 30.769 15.93 13.97 0.00 2.59
2764 2791 8.684386 TGTTGTAGTCCATTTGAAATGTCTAA 57.316 30.769 15.93 4.89 0.00 2.10
2765 2792 9.126151 TGTTGTAGTCCATTTGAAATGTCTAAA 57.874 29.630 15.93 10.39 0.00 1.85
2766 2793 9.959749 GTTGTAGTCCATTTGAAATGTCTAAAA 57.040 29.630 15.93 14.59 0.00 1.52
2790 2817 8.515695 AAAAACTTATATTTAGGAACGGAGGG 57.484 34.615 0.00 0.00 0.00 4.30
2791 2818 7.441903 AAACTTATATTTAGGAACGGAGGGA 57.558 36.000 0.00 0.00 0.00 4.20
2792 2819 6.667558 ACTTATATTTAGGAACGGAGGGAG 57.332 41.667 0.00 0.00 0.00 4.30
2816 2843 2.772077 TGTTAAATCGGTGCAGGCTA 57.228 45.000 0.00 0.00 0.00 3.93
2817 2844 2.352388 TGTTAAATCGGTGCAGGCTAC 58.648 47.619 0.00 0.00 0.00 3.58
2818 2845 2.289756 TGTTAAATCGGTGCAGGCTACA 60.290 45.455 0.00 0.00 0.00 2.74
2819 2846 2.943033 GTTAAATCGGTGCAGGCTACAT 59.057 45.455 0.00 0.00 0.00 2.29
2867 2894 8.621532 AACTATCAAGAATGCAACTAAGTTGA 57.378 30.769 0.00 0.00 45.28 3.18
2912 2939 8.677300 TCATTTCTTCACAGCTCATTTTATACC 58.323 33.333 0.00 0.00 0.00 2.73
2928 2955 0.618458 TACCTGGAACTCACCATGGC 59.382 55.000 13.04 0.00 39.34 4.40
3130 3159 9.981460 ACACTCTGATATTTATTTCCTTTCCTT 57.019 29.630 0.00 0.00 0.00 3.36
3193 3222 5.398236 TCTTACCCCTCTAGAATCCAGATG 58.602 45.833 0.00 0.00 0.00 2.90
3194 3223 3.715648 ACCCCTCTAGAATCCAGATGT 57.284 47.619 0.00 0.00 0.00 3.06
3196 3225 3.970640 ACCCCTCTAGAATCCAGATGTTC 59.029 47.826 0.00 0.00 0.00 3.18
3197 3226 4.230455 CCCCTCTAGAATCCAGATGTTCT 58.770 47.826 0.00 0.00 38.22 3.01
3198 3227 5.103043 ACCCCTCTAGAATCCAGATGTTCTA 60.103 44.000 0.00 0.00 36.23 2.10
3200 3229 6.154363 CCCCTCTAGAATCCAGATGTTCTATC 59.846 46.154 0.00 0.00 36.61 2.08
3201 3230 6.953520 CCCTCTAGAATCCAGATGTTCTATCT 59.046 42.308 0.00 0.00 36.61 1.98
3202 3231 7.122650 CCCTCTAGAATCCAGATGTTCTATCTC 59.877 44.444 0.00 0.00 36.61 2.75
3253 3290 7.174946 GGGAAAGATGTTTCTAGAACACATCAA 59.825 37.037 33.29 12.46 46.30 2.57
3395 3432 9.616156 TCCAACGGCTAATATTTGAAGTTATTA 57.384 29.630 0.77 0.00 0.00 0.98
3483 3520 4.820897 TCTTAGTTCAATGTCACGATGCT 58.179 39.130 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 59 6.153170 TCTGCATGTTTCATATTGGTTCACAT 59.847 34.615 0.00 0.00 0.00 3.21
211 225 6.184068 TGTGCTAGCCACCTTTATTGATTAA 58.816 36.000 13.29 0.00 44.01 1.40
270 286 3.430453 GAACAGATGGGGGATTGAAACA 58.570 45.455 0.00 0.00 0.00 2.83
272 288 2.381618 TGGAACAGATGGGGGATTGAAA 59.618 45.455 0.00 0.00 0.00 2.69
346 362 4.497291 ACAAACCAACTCTGAGGTTGTA 57.503 40.909 9.85 0.00 46.92 2.41
424 440 2.220313 GCTACCTTCGATCGTACCTCT 58.780 52.381 15.94 0.00 0.00 3.69
431 447 1.319172 CGAATCGCTACCTTCGATCG 58.681 55.000 9.36 9.36 44.80 3.69
519 537 7.335673 ACAATACAACAATCATCCACATTACGA 59.664 33.333 0.00 0.00 0.00 3.43
520 538 7.429051 CACAATACAACAATCATCCACATTACG 59.571 37.037 0.00 0.00 0.00 3.18
521 539 8.243426 ACACAATACAACAATCATCCACATTAC 58.757 33.333 0.00 0.00 0.00 1.89
522 540 8.347004 ACACAATACAACAATCATCCACATTA 57.653 30.769 0.00 0.00 0.00 1.90
523 541 7.230849 ACACAATACAACAATCATCCACATT 57.769 32.000 0.00 0.00 0.00 2.71
524 542 6.839124 ACACAATACAACAATCATCCACAT 57.161 33.333 0.00 0.00 0.00 3.21
525 543 6.445475 CAACACAATACAACAATCATCCACA 58.555 36.000 0.00 0.00 0.00 4.17
526 544 5.863397 CCAACACAATACAACAATCATCCAC 59.137 40.000 0.00 0.00 0.00 4.02
527 545 5.538053 ACCAACACAATACAACAATCATCCA 59.462 36.000 0.00 0.00 0.00 3.41
528 546 6.024552 ACCAACACAATACAACAATCATCC 57.975 37.500 0.00 0.00 0.00 3.51
529 547 9.075519 CAATACCAACACAATACAACAATCATC 57.924 33.333 0.00 0.00 0.00 2.92
530 548 8.801299 TCAATACCAACACAATACAACAATCAT 58.199 29.630 0.00 0.00 0.00 2.45
531 549 8.171164 TCAATACCAACACAATACAACAATCA 57.829 30.769 0.00 0.00 0.00 2.57
582 600 9.859427 CACAAAAATACAACAATCATCCATACT 57.141 29.630 0.00 0.00 0.00 2.12
583 601 9.086336 CCACAAAAATACAACAATCATCCATAC 57.914 33.333 0.00 0.00 0.00 2.39
584 602 8.811017 ACCACAAAAATACAACAATCATCCATA 58.189 29.630 0.00 0.00 0.00 2.74
585 603 7.603404 CACCACAAAAATACAACAATCATCCAT 59.397 33.333 0.00 0.00 0.00 3.41
586 604 6.927936 CACCACAAAAATACAACAATCATCCA 59.072 34.615 0.00 0.00 0.00 3.41
587 605 6.928492 ACACCACAAAAATACAACAATCATCC 59.072 34.615 0.00 0.00 0.00 3.51
588 606 7.095691 CCACACCACAAAAATACAACAATCATC 60.096 37.037 0.00 0.00 0.00 2.92
589 607 6.705381 CCACACCACAAAAATACAACAATCAT 59.295 34.615 0.00 0.00 0.00 2.45
590 608 6.045318 CCACACCACAAAAATACAACAATCA 58.955 36.000 0.00 0.00 0.00 2.57
591 609 6.045955 ACCACACCACAAAAATACAACAATC 58.954 36.000 0.00 0.00 0.00 2.67
592 610 5.983540 ACCACACCACAAAAATACAACAAT 58.016 33.333 0.00 0.00 0.00 2.71
593 611 5.407407 ACCACACCACAAAAATACAACAA 57.593 34.783 0.00 0.00 0.00 2.83
594 612 6.716934 ATACCACACCACAAAAATACAACA 57.283 33.333 0.00 0.00 0.00 3.33
595 613 7.203910 TCAATACCACACCACAAAAATACAAC 58.796 34.615 0.00 0.00 0.00 3.32
596 614 7.348080 TCAATACCACACCACAAAAATACAA 57.652 32.000 0.00 0.00 0.00 2.41
597 615 6.961360 TCAATACCACACCACAAAAATACA 57.039 33.333 0.00 0.00 0.00 2.29
601 619 9.915629 GTAAATATCAATACCACACCACAAAAA 57.084 29.630 0.00 0.00 0.00 1.94
602 620 8.237949 CGTAAATATCAATACCACACCACAAAA 58.762 33.333 0.00 0.00 0.00 2.44
603 621 7.148222 CCGTAAATATCAATACCACACCACAAA 60.148 37.037 0.00 0.00 0.00 2.83
604 622 6.316640 CCGTAAATATCAATACCACACCACAA 59.683 38.462 0.00 0.00 0.00 3.33
605 623 5.818336 CCGTAAATATCAATACCACACCACA 59.182 40.000 0.00 0.00 0.00 4.17
606 624 6.018507 GTCCGTAAATATCAATACCACACCAC 60.019 42.308 0.00 0.00 0.00 4.16
607 625 6.050432 GTCCGTAAATATCAATACCACACCA 58.950 40.000 0.00 0.00 0.00 4.17
608 626 5.467735 GGTCCGTAAATATCAATACCACACC 59.532 44.000 0.00 0.00 0.00 4.16
609 627 5.467735 GGGTCCGTAAATATCAATACCACAC 59.532 44.000 0.00 0.00 0.00 3.82
610 628 5.613329 GGGTCCGTAAATATCAATACCACA 58.387 41.667 0.00 0.00 0.00 4.17
611 629 4.687483 CGGGTCCGTAAATATCAATACCAC 59.313 45.833 0.55 0.00 34.35 4.16
612 630 4.800249 GCGGGTCCGTAAATATCAATACCA 60.800 45.833 11.25 0.00 42.09 3.25
613 631 3.681417 GCGGGTCCGTAAATATCAATACC 59.319 47.826 11.25 0.00 42.09 2.73
614 632 3.365820 CGCGGGTCCGTAAATATCAATAC 59.634 47.826 11.25 0.00 42.09 1.89
615 633 3.577667 CGCGGGTCCGTAAATATCAATA 58.422 45.455 11.25 0.00 42.09 1.90
616 634 2.409975 CGCGGGTCCGTAAATATCAAT 58.590 47.619 11.25 0.00 42.09 2.57
617 635 1.855513 CGCGGGTCCGTAAATATCAA 58.144 50.000 11.25 0.00 42.09 2.57
618 636 0.598158 GCGCGGGTCCGTAAATATCA 60.598 55.000 8.83 0.00 42.09 2.15
619 637 0.598158 TGCGCGGGTCCGTAAATATC 60.598 55.000 8.83 0.00 42.09 1.63
620 638 0.599204 CTGCGCGGGTCCGTAAATAT 60.599 55.000 8.83 0.00 42.09 1.28
621 639 1.227031 CTGCGCGGGTCCGTAAATA 60.227 57.895 8.83 0.00 42.09 1.40
622 640 2.510691 CTGCGCGGGTCCGTAAAT 60.511 61.111 8.83 0.00 42.09 1.40
635 653 3.020026 CTTCTCTTGTGCCGCTGCG 62.020 63.158 16.34 16.34 41.78 5.18
636 654 1.669115 TCTTCTCTTGTGCCGCTGC 60.669 57.895 0.00 0.00 38.26 5.25
637 655 1.294659 GGTCTTCTCTTGTGCCGCTG 61.295 60.000 0.00 0.00 0.00 5.18
638 656 1.004440 GGTCTTCTCTTGTGCCGCT 60.004 57.895 0.00 0.00 0.00 5.52
639 657 2.035442 GGGTCTTCTCTTGTGCCGC 61.035 63.158 0.00 0.00 0.00 6.53
640 658 1.376037 GGGGTCTTCTCTTGTGCCG 60.376 63.158 0.00 0.00 0.00 5.69
641 659 1.376037 CGGGGTCTTCTCTTGTGCC 60.376 63.158 0.00 0.00 0.00 5.01
642 660 1.376037 CCGGGGTCTTCTCTTGTGC 60.376 63.158 0.00 0.00 0.00 4.57
643 661 0.685097 TTCCGGGGTCTTCTCTTGTG 59.315 55.000 0.00 0.00 0.00 3.33
644 662 1.348036 CTTTCCGGGGTCTTCTCTTGT 59.652 52.381 0.00 0.00 0.00 3.16
645 663 1.946283 GCTTTCCGGGGTCTTCTCTTG 60.946 57.143 0.00 0.00 0.00 3.02
646 664 0.325272 GCTTTCCGGGGTCTTCTCTT 59.675 55.000 0.00 0.00 0.00 2.85
647 665 1.554583 GGCTTTCCGGGGTCTTCTCT 61.555 60.000 0.00 0.00 0.00 3.10
648 666 1.078356 GGCTTTCCGGGGTCTTCTC 60.078 63.158 0.00 0.00 0.00 2.87
649 667 3.078817 GGCTTTCCGGGGTCTTCT 58.921 61.111 0.00 0.00 0.00 2.85
659 677 1.929806 CTTTTACGGGCCGGCTTTCC 61.930 60.000 31.78 18.57 0.00 3.13
660 678 0.956902 TCTTTTACGGGCCGGCTTTC 60.957 55.000 31.78 15.23 0.00 2.62
661 679 0.958876 CTCTTTTACGGGCCGGCTTT 60.959 55.000 31.78 11.88 0.00 3.51
662 680 1.376812 CTCTTTTACGGGCCGGCTT 60.377 57.895 31.78 12.31 0.00 4.35
663 681 1.259840 TACTCTTTTACGGGCCGGCT 61.260 55.000 31.78 13.15 0.00 5.52
664 682 0.179065 ATACTCTTTTACGGGCCGGC 60.179 55.000 31.78 21.18 0.00 6.13
665 683 3.672767 ATATACTCTTTTACGGGCCGG 57.327 47.619 31.78 12.18 0.00 6.13
666 684 3.671928 CGAATATACTCTTTTACGGGCCG 59.328 47.826 27.06 27.06 0.00 6.13
667 685 4.683320 GTCGAATATACTCTTTTACGGGCC 59.317 45.833 0.00 0.00 0.00 5.80
668 686 4.380974 CGTCGAATATACTCTTTTACGGGC 59.619 45.833 0.00 0.00 0.00 6.13
669 687 5.751680 TCGTCGAATATACTCTTTTACGGG 58.248 41.667 0.00 0.00 0.00 5.28
670 688 7.848716 ATTCGTCGAATATACTCTTTTACGG 57.151 36.000 18.66 0.00 29.72 4.02
683 701 9.345517 CCCGTATAAAAGAATATTCGTCGAATA 57.654 33.333 25.51 25.51 38.61 1.75
684 702 7.869429 ACCCGTATAAAAGAATATTCGTCGAAT 59.131 33.333 23.01 23.01 36.20 3.34
685 703 7.202526 ACCCGTATAAAAGAATATTCGTCGAA 58.797 34.615 10.61 10.61 0.00 3.71
686 704 6.738114 ACCCGTATAAAAGAATATTCGTCGA 58.262 36.000 9.78 0.00 0.00 4.20
687 705 6.088616 GGACCCGTATAAAAGAATATTCGTCG 59.911 42.308 9.78 6.20 0.00 5.12
688 706 6.088616 CGGACCCGTATAAAAGAATATTCGTC 59.911 42.308 9.78 6.95 34.35 4.20
689 707 5.922544 CGGACCCGTATAAAAGAATATTCGT 59.077 40.000 9.78 3.84 34.35 3.85
690 708 6.385537 CGGACCCGTATAAAAGAATATTCG 57.614 41.667 9.78 0.00 34.35 3.34
712 730 1.982073 GAGGCAGATCCCGCAAAACG 61.982 60.000 7.01 0.00 43.15 3.60
713 731 0.678048 AGAGGCAGATCCCGCAAAAC 60.678 55.000 7.01 0.00 34.51 2.43
714 732 0.677731 CAGAGGCAGATCCCGCAAAA 60.678 55.000 7.01 0.00 34.51 2.44
715 733 1.078214 CAGAGGCAGATCCCGCAAA 60.078 57.895 7.01 0.00 34.51 3.68
716 734 2.586245 CAGAGGCAGATCCCGCAA 59.414 61.111 7.01 0.00 34.51 4.85
717 735 4.166888 GCAGAGGCAGATCCCGCA 62.167 66.667 7.01 0.00 40.72 5.69
719 737 4.598894 CCGCAGAGGCAGATCCCG 62.599 72.222 0.00 0.00 41.24 5.14
750 768 1.285950 GGAAACACGGCTTTGAGGC 59.714 57.895 0.00 0.00 37.44 4.70
751 769 1.574428 CGGAAACACGGCTTTGAGG 59.426 57.895 0.00 0.00 0.00 3.86
752 770 1.082104 GCGGAAACACGGCTTTGAG 60.082 57.895 0.00 0.00 40.81 3.02
753 771 2.887889 CGCGGAAACACGGCTTTGA 61.888 57.895 0.00 0.00 41.63 2.69
754 772 2.381665 TTCGCGGAAACACGGCTTTG 62.382 55.000 6.13 0.00 41.63 2.77
755 773 2.181521 TTCGCGGAAACACGGCTTT 61.182 52.632 6.13 0.00 41.63 3.51
756 774 2.589442 TTCGCGGAAACACGGCTT 60.589 55.556 6.13 0.00 41.63 4.35
757 775 3.343421 GTTCGCGGAAACACGGCT 61.343 61.111 6.13 0.00 41.63 5.52
758 776 3.343421 AGTTCGCGGAAACACGGC 61.343 61.111 6.13 0.00 40.64 5.68
759 777 2.549282 CAGTTCGCGGAAACACGG 59.451 61.111 6.13 0.00 36.32 4.94
760 778 2.127758 GCAGTTCGCGGAAACACG 60.128 61.111 6.13 1.02 37.19 4.49
761 779 0.248296 TTTGCAGTTCGCGGAAACAC 60.248 50.000 6.13 1.55 46.97 3.32
762 780 0.248296 GTTTGCAGTTCGCGGAAACA 60.248 50.000 6.13 0.00 46.97 2.83
763 781 1.259544 CGTTTGCAGTTCGCGGAAAC 61.260 55.000 6.13 4.07 46.97 2.78
764 782 1.010574 CGTTTGCAGTTCGCGGAAA 60.011 52.632 6.13 0.00 46.97 3.13
765 783 2.629210 CGTTTGCAGTTCGCGGAA 59.371 55.556 6.13 0.00 46.97 4.30
766 784 4.007940 GCGTTTGCAGTTCGCGGA 62.008 61.111 6.13 0.00 46.97 5.54
769 787 1.468340 AAAACGCGTTTGCAGTTCGC 61.468 50.000 35.31 17.67 45.28 4.70
770 788 0.223513 CAAAACGCGTTTGCAGTTCG 59.776 50.000 35.31 15.11 40.25 3.95
783 801 1.833434 TAACGCCGACCAGCAAAACG 61.833 55.000 0.00 0.00 0.00 3.60
784 802 0.519961 ATAACGCCGACCAGCAAAAC 59.480 50.000 0.00 0.00 0.00 2.43
785 803 0.519519 CATAACGCCGACCAGCAAAA 59.480 50.000 0.00 0.00 0.00 2.44
786 804 1.917782 GCATAACGCCGACCAGCAAA 61.918 55.000 0.00 0.00 32.94 3.68
787 805 2.395360 GCATAACGCCGACCAGCAA 61.395 57.895 0.00 0.00 32.94 3.91
788 806 2.817834 GCATAACGCCGACCAGCA 60.818 61.111 0.00 0.00 32.94 4.41
789 807 3.925238 CGCATAACGCCGACCAGC 61.925 66.667 0.00 0.00 37.30 4.85
790 808 3.261951 CCGCATAACGCCGACCAG 61.262 66.667 0.00 0.00 41.76 4.00
791 809 4.823419 CCCGCATAACGCCGACCA 62.823 66.667 0.00 0.00 41.76 4.02
793 811 4.825252 ACCCCGCATAACGCCGAC 62.825 66.667 0.00 0.00 41.76 4.79
794 812 4.517815 GACCCCGCATAACGCCGA 62.518 66.667 0.00 0.00 41.76 5.54
806 824 2.187163 GCAACTCTAGCGGACCCC 59.813 66.667 0.00 0.00 0.00 4.95
807 825 1.142097 GAGCAACTCTAGCGGACCC 59.858 63.158 0.00 0.00 37.01 4.46
808 826 1.390565 TAGAGCAACTCTAGCGGACC 58.609 55.000 0.16 0.00 41.50 4.46
809 827 2.223618 CCTTAGAGCAACTCTAGCGGAC 60.224 54.545 12.92 0.00 42.92 4.79
810 828 2.025155 CCTTAGAGCAACTCTAGCGGA 58.975 52.381 12.92 0.00 42.92 5.54
811 829 1.537135 GCCTTAGAGCAACTCTAGCGG 60.537 57.143 13.51 13.51 42.92 5.52
812 830 1.846541 GCCTTAGAGCAACTCTAGCG 58.153 55.000 4.64 1.34 42.92 4.26
813 831 1.135333 ACGCCTTAGAGCAACTCTAGC 59.865 52.381 4.64 5.41 42.92 3.42
814 832 2.164624 ACACGCCTTAGAGCAACTCTAG 59.835 50.000 4.64 0.00 42.92 2.43
815 833 2.168496 ACACGCCTTAGAGCAACTCTA 58.832 47.619 0.16 0.16 41.50 2.43
816 834 0.969894 ACACGCCTTAGAGCAACTCT 59.030 50.000 2.23 2.23 43.83 3.24
817 835 1.727335 GAACACGCCTTAGAGCAACTC 59.273 52.381 0.00 0.00 0.00 3.01
818 836 1.070134 TGAACACGCCTTAGAGCAACT 59.930 47.619 0.00 0.00 0.00 3.16
819 837 1.194772 GTGAACACGCCTTAGAGCAAC 59.805 52.381 0.00 0.00 0.00 4.17
820 838 1.202592 TGTGAACACGCCTTAGAGCAA 60.203 47.619 0.57 0.00 0.00 3.91
821 839 0.391228 TGTGAACACGCCTTAGAGCA 59.609 50.000 0.57 0.00 0.00 4.26
822 840 0.790814 GTGTGAACACGCCTTAGAGC 59.209 55.000 7.19 0.00 37.10 4.09
832 850 3.723554 TTTTTGCGGGTGTGAACAC 57.276 47.368 4.97 4.97 45.72 3.32
851 869 9.659830 GTTCGTCCGAGCAAAATTATATTATTT 57.340 29.630 0.00 0.00 0.00 1.40
852 870 9.052759 AGTTCGTCCGAGCAAAATTATATTATT 57.947 29.630 6.33 0.00 0.00 1.40
853 871 8.495949 CAGTTCGTCCGAGCAAAATTATATTAT 58.504 33.333 6.33 0.00 0.00 1.28
854 872 7.493320 ACAGTTCGTCCGAGCAAAATTATATTA 59.507 33.333 6.33 0.00 0.00 0.98
855 873 6.315393 ACAGTTCGTCCGAGCAAAATTATATT 59.685 34.615 6.33 0.00 0.00 1.28
856 874 5.815740 ACAGTTCGTCCGAGCAAAATTATAT 59.184 36.000 6.33 0.00 0.00 0.86
857 875 5.172934 ACAGTTCGTCCGAGCAAAATTATA 58.827 37.500 6.33 0.00 0.00 0.98
858 876 4.000988 ACAGTTCGTCCGAGCAAAATTAT 58.999 39.130 6.33 0.00 0.00 1.28
885 903 3.489398 GCTGAGTATCACGGTCCAGTAAG 60.489 52.174 0.00 0.00 42.56 2.34
898 916 2.952116 AGTACTCCTGGGCTGAGTATC 58.048 52.381 12.69 8.46 44.62 2.24
927 945 4.340666 TGTGGCTTTCAACTTGCAGATTAA 59.659 37.500 0.00 0.00 0.00 1.40
928 946 3.888323 TGTGGCTTTCAACTTGCAGATTA 59.112 39.130 0.00 0.00 0.00 1.75
969 987 3.507377 AACTGTTCGGGCTTGGGGG 62.507 63.158 0.00 0.00 0.00 5.40
974 999 1.610886 GCTAAGGAACTGTTCGGGCTT 60.611 52.381 13.89 13.27 40.86 4.35
1026 1051 1.376942 GGAGAGGTGGTCGAGACGA 60.377 63.158 0.00 0.00 0.00 4.20
1029 1054 2.045242 CGGGAGAGGTGGTCGAGA 60.045 66.667 0.00 0.00 0.00 4.04
1526 1551 1.967535 CAGGAGACCTGCGTTCTGA 59.032 57.895 4.84 0.00 45.13 3.27
1641 1666 6.449635 TTGCAGTATCCAATAATCAACACC 57.550 37.500 0.00 0.00 0.00 4.16
1693 1718 3.691575 TCCCTGGCATTTTATCGAACAA 58.308 40.909 0.00 0.00 0.00 2.83
1980 2005 0.327259 AAGCATTGAGAGCCTGCTCA 59.673 50.000 20.38 2.13 45.10 4.26
2097 2122 1.783031 CTGCCTGATCTTGCATCCGC 61.783 60.000 9.64 0.00 36.79 5.54
2142 2167 2.250939 GCACGCAGTAAGCACACCA 61.251 57.895 0.00 0.00 41.61 4.17
2244 2269 4.502171 CATGTCAACAACACAGGCATAA 57.498 40.909 0.00 0.00 41.75 1.90
2259 2284 1.227793 TGCACGACCAAGCATGTCA 60.228 52.632 0.00 0.00 35.51 3.58
2289 2314 1.988107 TGGACCATCTCAAAAGCCTCT 59.012 47.619 0.00 0.00 0.00 3.69
2474 2499 0.846427 TGCCTCCTCCCATTGTCCTT 60.846 55.000 0.00 0.00 0.00 3.36
2503 2528 4.853924 ATTTTGTTTTCATCAGCGACCT 57.146 36.364 0.00 0.00 0.00 3.85
2583 2609 3.304324 GCTTTTCAGCTCCTCAAAGACAC 60.304 47.826 7.36 0.00 43.51 3.67
2610 2637 7.298854 GGAGTAGTAGCAAACAGAAATGTTTC 58.701 38.462 3.48 0.00 39.68 2.78
2627 2654 9.866655 TTATATTTAGAAACGGAGGGAGTAGTA 57.133 33.333 0.00 0.00 0.00 1.82
2628 2655 8.773033 TTATATTTAGAAACGGAGGGAGTAGT 57.227 34.615 0.00 0.00 0.00 2.73
2629 2656 8.858094 ACTTATATTTAGAAACGGAGGGAGTAG 58.142 37.037 0.00 0.00 0.00 2.57
2630 2657 8.773033 ACTTATATTTAGAAACGGAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
2631 2658 7.564292 AGACTTATATTTAGAAACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
2632 2659 7.953752 AGACTTATATTTAGAAACGGAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
2633 2660 7.909485 AGACTTATATTTAGAAACGGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
2634 2661 8.959705 AAAGACTTATATTTAGAAACGGAGGG 57.040 34.615 0.00 0.00 0.00 4.30
2662 2689 8.873830 CGTATGTAGTCATTTGTTGAAATCTCT 58.126 33.333 0.00 0.00 35.70 3.10
2663 2690 8.116753 CCGTATGTAGTCATTTGTTGAAATCTC 58.883 37.037 0.00 0.00 35.70 2.75
2664 2691 7.822334 TCCGTATGTAGTCATTTGTTGAAATCT 59.178 33.333 0.00 0.00 35.70 2.40
2665 2692 7.970384 TCCGTATGTAGTCATTTGTTGAAATC 58.030 34.615 0.00 0.00 35.70 2.17
2666 2693 7.414098 GCTCCGTATGTAGTCATTTGTTGAAAT 60.414 37.037 0.00 0.00 35.70 2.17
2667 2694 6.128391 GCTCCGTATGTAGTCATTTGTTGAAA 60.128 38.462 0.00 0.00 35.70 2.69
2668 2695 5.350365 GCTCCGTATGTAGTCATTTGTTGAA 59.650 40.000 0.00 0.00 35.70 2.69
2669 2696 4.868171 GCTCCGTATGTAGTCATTTGTTGA 59.132 41.667 0.00 0.00 35.70 3.18
2670 2697 4.629634 TGCTCCGTATGTAGTCATTTGTTG 59.370 41.667 0.00 0.00 35.70 3.33
2671 2698 4.827692 TGCTCCGTATGTAGTCATTTGTT 58.172 39.130 0.00 0.00 35.70 2.83
2672 2699 4.465632 TGCTCCGTATGTAGTCATTTGT 57.534 40.909 0.00 0.00 35.70 2.83
2673 2700 5.794687 TTTGCTCCGTATGTAGTCATTTG 57.205 39.130 0.00 0.00 35.70 2.32
2674 2701 6.597672 TCATTTTGCTCCGTATGTAGTCATTT 59.402 34.615 0.00 0.00 35.70 2.32
2675 2702 6.112734 TCATTTTGCTCCGTATGTAGTCATT 58.887 36.000 0.00 0.00 35.70 2.57
2676 2703 5.670485 TCATTTTGCTCCGTATGTAGTCAT 58.330 37.500 0.00 0.00 38.00 3.06
2677 2704 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2678 2705 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2679 2706 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2680 2707 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2681 2708 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2682 2709 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2683 2710 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2684 2711 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2685 2712 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2686 2713 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2687 2714 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2688 2715 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2689 2716 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2728 2755 6.665992 ATGGACTACAACATACGGATGTAT 57.334 37.500 15.10 8.21 45.93 2.29
2729 2756 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
2731 2758 5.815222 TCAAATGGACTACAACATACGGATG 59.185 40.000 5.94 5.94 39.16 3.51
2732 2759 5.984725 TCAAATGGACTACAACATACGGAT 58.015 37.500 0.00 0.00 0.00 4.18
2733 2760 5.408880 TCAAATGGACTACAACATACGGA 57.591 39.130 0.00 0.00 0.00 4.69
2734 2761 6.489127 TTTCAAATGGACTACAACATACGG 57.511 37.500 0.00 0.00 0.00 4.02
2735 2762 7.526608 ACATTTCAAATGGACTACAACATACG 58.473 34.615 14.70 0.00 0.00 3.06
2736 2763 8.730680 AGACATTTCAAATGGACTACAACATAC 58.269 33.333 14.70 0.00 0.00 2.39
2737 2764 8.862325 AGACATTTCAAATGGACTACAACATA 57.138 30.769 14.70 0.00 0.00 2.29
2738 2765 7.765695 AGACATTTCAAATGGACTACAACAT 57.234 32.000 14.70 0.00 0.00 2.71
2739 2766 8.684386 TTAGACATTTCAAATGGACTACAACA 57.316 30.769 14.70 1.25 0.00 3.33
2740 2767 9.959749 TTTTAGACATTTCAAATGGACTACAAC 57.040 29.630 14.70 0.00 0.00 3.32
2765 2792 8.330993 TCCCTCCGTTCCTAAATATAAGTTTTT 58.669 33.333 0.00 0.00 0.00 1.94
2766 2793 7.864770 TCCCTCCGTTCCTAAATATAAGTTTT 58.135 34.615 0.00 0.00 0.00 2.43
2767 2794 7.126879 ACTCCCTCCGTTCCTAAATATAAGTTT 59.873 37.037 0.00 0.00 0.00 2.66
2768 2795 6.614496 ACTCCCTCCGTTCCTAAATATAAGTT 59.386 38.462 0.00 0.00 0.00 2.66
2769 2796 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2770 2797 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2772 2799 9.417561 CATATACTCCCTCCGTTCCTAAATATA 57.582 37.037 0.00 0.00 0.00 0.86
2773 2800 7.899709 ACATATACTCCCTCCGTTCCTAAATAT 59.100 37.037 0.00 0.00 0.00 1.28
2774 2801 7.243824 ACATATACTCCCTCCGTTCCTAAATA 58.756 38.462 0.00 0.00 0.00 1.40
2775 2802 6.082707 ACATATACTCCCTCCGTTCCTAAAT 58.917 40.000 0.00 0.00 0.00 1.40
2776 2803 5.461327 ACATATACTCCCTCCGTTCCTAAA 58.539 41.667 0.00 0.00 0.00 1.85
2777 2804 5.070823 ACATATACTCCCTCCGTTCCTAA 57.929 43.478 0.00 0.00 0.00 2.69
2778 2805 4.736611 ACATATACTCCCTCCGTTCCTA 57.263 45.455 0.00 0.00 0.00 2.94
2779 2806 3.614568 ACATATACTCCCTCCGTTCCT 57.385 47.619 0.00 0.00 0.00 3.36
2780 2807 5.796424 TTAACATATACTCCCTCCGTTCC 57.204 43.478 0.00 0.00 0.00 3.62
2781 2808 6.585322 CGATTTAACATATACTCCCTCCGTTC 59.415 42.308 0.00 0.00 0.00 3.95
2782 2809 6.453092 CGATTTAACATATACTCCCTCCGTT 58.547 40.000 0.00 0.00 0.00 4.44
2783 2810 5.047519 CCGATTTAACATATACTCCCTCCGT 60.048 44.000 0.00 0.00 0.00 4.69
2784 2811 5.047519 ACCGATTTAACATATACTCCCTCCG 60.048 44.000 0.00 0.00 0.00 4.63
2785 2812 6.164176 CACCGATTTAACATATACTCCCTCC 58.836 44.000 0.00 0.00 0.00 4.30
2786 2813 5.638234 GCACCGATTTAACATATACTCCCTC 59.362 44.000 0.00 0.00 0.00 4.30
2787 2814 5.071250 TGCACCGATTTAACATATACTCCCT 59.929 40.000 0.00 0.00 0.00 4.20
2788 2815 5.302360 TGCACCGATTTAACATATACTCCC 58.698 41.667 0.00 0.00 0.00 4.30
2789 2816 5.408604 CCTGCACCGATTTAACATATACTCC 59.591 44.000 0.00 0.00 0.00 3.85
2790 2817 5.107065 GCCTGCACCGATTTAACATATACTC 60.107 44.000 0.00 0.00 0.00 2.59
2791 2818 4.755123 GCCTGCACCGATTTAACATATACT 59.245 41.667 0.00 0.00 0.00 2.12
2792 2819 4.755123 AGCCTGCACCGATTTAACATATAC 59.245 41.667 0.00 0.00 0.00 1.47
2816 2843 3.091633 AGCCATGTTTTCTGCCTATGT 57.908 42.857 0.00 0.00 0.00 2.29
2817 2844 5.779529 ATTAGCCATGTTTTCTGCCTATG 57.220 39.130 0.00 0.00 0.00 2.23
2818 2845 5.893255 TCAATTAGCCATGTTTTCTGCCTAT 59.107 36.000 0.00 0.00 0.00 2.57
2819 2846 5.260424 TCAATTAGCCATGTTTTCTGCCTA 58.740 37.500 0.00 0.00 0.00 3.93
2867 2894 3.107601 TGAAGGTACCTTGCTAGCATCT 58.892 45.455 31.81 3.14 36.26 2.90
2912 2939 2.787473 TTAGCCATGGTGAGTTCCAG 57.213 50.000 14.67 0.00 41.05 3.86
3044 3073 7.059147 GCAAAGCACGTACAATTTACTAGTTTC 59.941 37.037 0.00 0.00 0.00 2.78
3202 3231 9.381033 CCCATGCTTATCTGATTCTCTAATAAG 57.619 37.037 0.00 0.00 34.51 1.73
3253 3290 5.520748 AACTGAACCCCAACTCTATCATT 57.479 39.130 0.00 0.00 0.00 2.57
3450 3487 9.066892 TGACATTGAACTAAGATTGCTTTACTT 57.933 29.630 0.00 0.00 35.56 2.24
3467 3504 5.469373 GATGTAAGCATCGTGACATTGAA 57.531 39.130 0.00 0.00 41.60 2.69
3538 3575 3.282021 TGATCTCACTAATTTGCAGGCC 58.718 45.455 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.