Multiple sequence alignment - TraesCS3D01G413500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G413500 chr3D 100.000 3439 0 0 1 3439 525753436 525749998 0.000000e+00 6351
1 TraesCS3D01G413500 chr3D 84.375 224 30 4 84 305 554393235 554393455 7.480000e-52 215
2 TraesCS3D01G413500 chr3B 92.475 2166 91 30 431 2542 694176549 694174402 0.000000e+00 3031
3 TraesCS3D01G413500 chr3B 88.235 357 23 11 2568 2911 694174284 694173934 3.190000e-110 409
4 TraesCS3D01G413500 chr3B 87.444 223 25 3 84 305 419313527 419313747 1.580000e-63 254
5 TraesCS3D01G413500 chr3B 91.304 92 6 2 3158 3247 694173343 694173252 1.300000e-24 124
6 TraesCS3D01G413500 chr3A 90.688 1643 90 28 945 2542 660054854 660053230 0.000000e+00 2128
7 TraesCS3D01G413500 chr3A 91.945 1167 57 11 1394 2542 660003236 660002089 0.000000e+00 1600
8 TraesCS3D01G413500 chr3A 90.000 950 55 15 307 1235 660016535 660015605 0.000000e+00 1192
9 TraesCS3D01G413500 chr3A 88.889 189 16 4 3240 3425 466040983 466040797 9.600000e-56 228
10 TraesCS3D01G413500 chr3A 92.810 153 10 1 2744 2896 659979292 659979141 1.610000e-53 220
11 TraesCS3D01G413500 chr3A 93.443 122 7 1 2964 3085 64085233 64085353 2.730000e-41 180
12 TraesCS3D01G413500 chr3A 94.175 103 6 0 2546 2648 659990470 659990368 1.280000e-34 158
13 TraesCS3D01G413500 chr3A 87.770 139 11 4 596 730 660056778 660056642 1.280000e-34 158
14 TraesCS3D01G413500 chr3A 94.565 92 5 0 1307 1398 660015575 660015484 3.580000e-30 143
15 TraesCS3D01G413500 chr3A 88.991 109 9 3 2643 2749 659979601 659979494 7.740000e-27 132
16 TraesCS3D01G413500 chr7A 88.973 263 26 2 44 305 84705809 84705549 4.280000e-84 322
17 TraesCS3D01G413500 chr7A 90.741 216 17 2 91 305 84708100 84708313 5.620000e-73 285
18 TraesCS3D01G413500 chr7A 90.000 180 16 2 3248 3425 572183175 572183354 7.420000e-57 231
19 TraesCS3D01G413500 chr7A 89.503 181 17 2 3247 3425 617432799 617432619 9.600000e-56 228
20 TraesCS3D01G413500 chr5D 86.545 275 35 2 1485 1758 353432474 353432747 5.580000e-78 302
21 TraesCS3D01G413500 chr5D 86.182 275 36 2 1485 1758 353426052 353426325 2.600000e-76 296
22 TraesCS3D01G413500 chr5D 88.444 225 23 3 84 307 457997807 457997585 5.660000e-68 268
23 TraesCS3D01G413500 chr5D 87.892 223 22 3 84 305 48051891 48051673 1.220000e-64 257
24 TraesCS3D01G413500 chr5D 86.996 223 27 2 86 307 556914783 556914562 2.050000e-62 250
25 TraesCS3D01G413500 chr5D 87.500 200 18 7 3239 3432 443898322 443898124 1.240000e-54 224
26 TraesCS3D01G413500 chr5B 86.182 275 36 2 1485 1758 416390357 416390630 2.600000e-76 296
27 TraesCS3D01G413500 chr5B 85.818 275 37 2 1485 1758 416418443 416418716 1.210000e-74 291
28 TraesCS3D01G413500 chr5B 93.277 119 8 0 2967 3085 711258118 711258000 3.530000e-40 176
29 TraesCS3D01G413500 chr5A 86.182 275 36 2 1485 1758 452267834 452267561 2.600000e-76 296
30 TraesCS3D01G413500 chr5A 85.502 269 35 4 1492 1758 454347075 454347341 9.400000e-71 278
31 TraesCS3D01G413500 chr5A 91.935 124 10 0 2962 3085 705285242 705285365 1.270000e-39 174
32 TraesCS3D01G413500 chr6A 89.700 233 21 2 76 307 553934586 553934356 9.330000e-76 294
33 TraesCS3D01G413500 chr6A 85.650 223 30 2 84 305 569677547 569677326 2.060000e-57 233
34 TraesCS3D01G413500 chr6A 83.784 222 33 2 89 309 581457088 581457307 1.250000e-49 207
35 TraesCS3D01G413500 chr2A 86.567 268 27 3 44 305 410871416 410871680 1.560000e-73 287
36 TraesCS3D01G413500 chr2A 88.542 192 20 2 3239 3429 451817214 451817404 7.420000e-57 231
37 TraesCS3D01G413500 chr2A 87.129 202 21 4 3236 3432 207052150 207052351 1.240000e-54 224
38 TraesCS3D01G413500 chr2A 92.742 124 8 1 2963 3085 98897409 98897532 9.810000e-41 178
39 TraesCS3D01G413500 chr7D 88.341 223 23 2 84 305 521905747 521905967 7.320000e-67 265
40 TraesCS3D01G413500 chr7D 93.333 120 7 1 2966 3085 580887679 580887561 3.530000e-40 176
41 TraesCS3D01G413500 chr4D 88.341 223 23 3 84 305 33242093 33242313 7.320000e-67 265
42 TraesCS3D01G413500 chr4D 86.547 223 28 2 84 305 496096077 496096298 9.530000e-61 244
43 TraesCS3D01G413500 chr4D 84.234 222 28 5 92 313 350266381 350266595 3.480000e-50 209
44 TraesCS3D01G413500 chr4D 92.623 122 8 1 2964 3085 465599579 465599699 1.270000e-39 174
45 TraesCS3D01G413500 chr1D 87.946 224 24 2 86 308 32535925 32535704 9.470000e-66 261
46 TraesCS3D01G413500 chr1D 85.586 222 29 3 84 304 32537911 32538130 2.670000e-56 230
47 TraesCS3D01G413500 chr4B 87.850 214 22 3 93 305 603048778 603048988 7.370000e-62 248
48 TraesCS3D01G413500 chr4B 86.344 227 28 2 90 315 13276404 13276628 9.530000e-61 244
49 TraesCS3D01G413500 chr4B 78.704 216 44 2 90 305 389755402 389755615 3.580000e-30 143
50 TraesCS3D01G413500 chrUn 89.474 190 15 4 3241 3425 30689428 30689239 5.740000e-58 235
51 TraesCS3D01G413500 chr4A 88.830 188 16 3 3246 3429 11366021 11366207 3.450000e-55 226
52 TraesCS3D01G413500 chr4A 87.000 200 18 6 3234 3425 93977304 93977105 5.780000e-53 219
53 TraesCS3D01G413500 chr4A 92.683 123 8 1 2963 3085 733536107 733536228 3.530000e-40 176
54 TraesCS3D01G413500 chr1A 83.036 224 33 4 84 305 471461245 471461025 7.530000e-47 198
55 TraesCS3D01G413500 chr6D 91.729 133 11 0 175 307 277053963 277054095 5.860000e-43 185
56 TraesCS3D01G413500 chr2B 92.366 131 8 2 2957 3085 796272937 796273067 5.860000e-43 185
57 TraesCS3D01G413500 chr7B 90.698 129 11 1 2957 3085 641803906 641804033 1.640000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G413500 chr3D 525749998 525753436 3438 True 6351.0 6351 100.000000 1 3439 1 chr3D.!!$R1 3438
1 TraesCS3D01G413500 chr3B 694173252 694176549 3297 True 1188.0 3031 90.671333 431 3247 3 chr3B.!!$R1 2816
2 TraesCS3D01G413500 chr3A 660002089 660003236 1147 True 1600.0 1600 91.945000 1394 2542 1 chr3A.!!$R3 1148
3 TraesCS3D01G413500 chr3A 660053230 660056778 3548 True 1143.0 2128 89.229000 596 2542 2 chr3A.!!$R6 1946
4 TraesCS3D01G413500 chr3A 660015484 660016535 1051 True 667.5 1192 92.282500 307 1398 2 chr3A.!!$R5 1091

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.037697 TCCGTTTCAGATCCGGTGTG 60.038 55.0 0.00 0.0 42.30 3.82 F
231 232 0.039035 GCAAGTTGGGGTATGGTGGA 59.961 55.0 4.75 0.0 0.00 4.02 F
236 237 0.039035 TTGGGGTATGGTGGAGTTGC 59.961 55.0 0.00 0.0 0.00 4.17 F
238 239 0.258774 GGGGTATGGTGGAGTTGCAT 59.741 55.0 0.00 0.0 0.00 3.96 F
304 305 0.404426 ACCTGGGGTGCTTTTACCTC 59.596 55.0 0.00 0.0 41.82 3.85 F
665 667 0.676184 TGCTCTCAGAGTGTGGTGTC 59.324 55.0 2.93 0.0 31.39 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1857 3569 0.244721 GGCACCAGCATTTCCTTCAC 59.755 55.000 0.00 0.00 44.61 3.18 R
2161 3873 2.437359 GCTCGAACAGGCTGCCAT 60.437 61.111 22.65 5.42 0.00 4.40 R
2163 3875 4.742201 TCGCTCGAACAGGCTGCC 62.742 66.667 15.89 11.65 0.00 4.85 R
2327 4048 2.421739 CTCCGTATCTTGGGCGGG 59.578 66.667 0.00 0.00 44.97 6.13 R
2339 4060 1.760086 CAGCTCCTCCATCCTCCGT 60.760 63.158 0.00 0.00 0.00 4.69 R
2508 4237 1.143073 GCGGAGGGGAATCTAACCAAT 59.857 52.381 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.834688 AGCTTGCTCTGCACCTGT 59.165 55.556 0.00 0.00 38.71 4.00
18 19 2.061220 AGCTTGCTCTGCACCTGTA 58.939 52.632 0.00 0.00 38.71 2.74
19 20 0.321122 AGCTTGCTCTGCACCTGTAC 60.321 55.000 0.00 0.00 38.71 2.90
20 21 0.321122 GCTTGCTCTGCACCTGTACT 60.321 55.000 0.00 0.00 38.71 2.73
21 22 1.879796 GCTTGCTCTGCACCTGTACTT 60.880 52.381 0.00 0.00 38.71 2.24
22 23 1.802960 CTTGCTCTGCACCTGTACTTG 59.197 52.381 0.00 0.00 38.71 3.16
23 24 0.758734 TGCTCTGCACCTGTACTTGT 59.241 50.000 0.00 0.00 31.71 3.16
24 25 1.140852 TGCTCTGCACCTGTACTTGTT 59.859 47.619 0.00 0.00 31.71 2.83
25 26 2.222027 GCTCTGCACCTGTACTTGTTT 58.778 47.619 0.00 0.00 0.00 2.83
26 27 2.618709 GCTCTGCACCTGTACTTGTTTT 59.381 45.455 0.00 0.00 0.00 2.43
27 28 3.066760 GCTCTGCACCTGTACTTGTTTTT 59.933 43.478 0.00 0.00 0.00 1.94
28 29 4.601019 CTCTGCACCTGTACTTGTTTTTG 58.399 43.478 0.00 0.00 0.00 2.44
29 30 3.115554 CTGCACCTGTACTTGTTTTTGC 58.884 45.455 0.00 0.00 0.00 3.68
30 31 2.116366 GCACCTGTACTTGTTTTTGCG 58.884 47.619 0.00 0.00 0.00 4.85
31 32 2.223386 GCACCTGTACTTGTTTTTGCGA 60.223 45.455 0.00 0.00 0.00 5.10
32 33 3.617669 CACCTGTACTTGTTTTTGCGAG 58.382 45.455 0.00 0.00 0.00 5.03
33 34 2.616842 ACCTGTACTTGTTTTTGCGAGG 59.383 45.455 0.00 0.00 0.00 4.63
34 35 2.875933 CCTGTACTTGTTTTTGCGAGGA 59.124 45.455 0.00 0.00 0.00 3.71
35 36 3.058914 CCTGTACTTGTTTTTGCGAGGAG 60.059 47.826 0.00 0.00 0.00 3.69
36 37 3.537580 TGTACTTGTTTTTGCGAGGAGT 58.462 40.909 0.00 0.00 0.00 3.85
37 38 3.558418 TGTACTTGTTTTTGCGAGGAGTC 59.442 43.478 0.00 0.00 0.00 3.36
38 39 2.639065 ACTTGTTTTTGCGAGGAGTCA 58.361 42.857 0.00 0.00 0.00 3.41
39 40 3.013921 ACTTGTTTTTGCGAGGAGTCAA 58.986 40.909 0.00 0.00 0.00 3.18
40 41 3.632145 ACTTGTTTTTGCGAGGAGTCAAT 59.368 39.130 0.00 0.00 0.00 2.57
41 42 4.819630 ACTTGTTTTTGCGAGGAGTCAATA 59.180 37.500 0.00 0.00 0.00 1.90
42 43 5.473504 ACTTGTTTTTGCGAGGAGTCAATAT 59.526 36.000 0.00 0.00 0.00 1.28
43 44 5.957842 TGTTTTTGCGAGGAGTCAATATT 57.042 34.783 0.00 0.00 0.00 1.28
44 45 6.325919 TGTTTTTGCGAGGAGTCAATATTT 57.674 33.333 0.00 0.00 0.00 1.40
45 46 6.378582 TGTTTTTGCGAGGAGTCAATATTTC 58.621 36.000 0.00 0.00 0.00 2.17
46 47 5.560966 TTTTGCGAGGAGTCAATATTTCC 57.439 39.130 0.00 0.00 0.00 3.13
47 48 4.487714 TTGCGAGGAGTCAATATTTCCT 57.512 40.909 6.85 6.85 43.86 3.36
53 54 5.437191 AGGAGTCAATATTTCCTCCGTTT 57.563 39.130 18.18 5.19 46.53 3.60
54 55 5.429130 AGGAGTCAATATTTCCTCCGTTTC 58.571 41.667 18.18 2.35 46.53 2.78
55 56 5.045869 AGGAGTCAATATTTCCTCCGTTTCA 60.046 40.000 18.18 0.00 46.53 2.69
56 57 5.294552 GGAGTCAATATTTCCTCCGTTTCAG 59.705 44.000 12.29 0.00 34.62 3.02
57 58 6.049955 AGTCAATATTTCCTCCGTTTCAGA 57.950 37.500 0.00 0.00 0.00 3.27
58 59 6.653989 AGTCAATATTTCCTCCGTTTCAGAT 58.346 36.000 0.00 0.00 0.00 2.90
59 60 6.763610 AGTCAATATTTCCTCCGTTTCAGATC 59.236 38.462 0.00 0.00 0.00 2.75
60 61 6.017852 GTCAATATTTCCTCCGTTTCAGATCC 60.018 42.308 0.00 0.00 0.00 3.36
61 62 2.380084 TTTCCTCCGTTTCAGATCCG 57.620 50.000 0.00 0.00 0.00 4.18
62 63 0.535335 TTCCTCCGTTTCAGATCCGG 59.465 55.000 0.00 0.00 43.03 5.14
63 64 0.613853 TCCTCCGTTTCAGATCCGGT 60.614 55.000 0.00 0.00 42.30 5.28
64 65 0.460284 CCTCCGTTTCAGATCCGGTG 60.460 60.000 0.00 5.17 42.30 4.94
65 66 0.246635 CTCCGTTTCAGATCCGGTGT 59.753 55.000 0.00 0.00 42.30 4.16
66 67 0.037697 TCCGTTTCAGATCCGGTGTG 60.038 55.000 0.00 0.00 42.30 3.82
67 68 0.037697 CCGTTTCAGATCCGGTGTGA 60.038 55.000 0.00 0.02 37.00 3.58
68 69 1.606994 CCGTTTCAGATCCGGTGTGAA 60.607 52.381 0.00 6.93 38.23 3.18
69 70 2.139917 CGTTTCAGATCCGGTGTGAAA 58.860 47.619 18.63 18.63 44.86 2.69
71 72 3.485463 TTTCAGATCCGGTGTGAAACT 57.515 42.857 18.63 0.00 42.96 2.66
72 73 3.485463 TTCAGATCCGGTGTGAAACTT 57.515 42.857 12.13 0.00 37.19 2.66
73 74 3.040147 TCAGATCCGGTGTGAAACTTC 57.960 47.619 0.00 0.00 38.04 3.01
74 75 2.367241 TCAGATCCGGTGTGAAACTTCA 59.633 45.455 0.00 0.00 38.04 3.02
88 89 6.060028 TGAAACTTCACACAGATTTGTAGC 57.940 37.500 0.00 0.00 31.79 3.58
89 90 4.732285 AACTTCACACAGATTTGTAGCG 57.268 40.909 0.00 0.00 35.25 4.26
90 91 2.480419 ACTTCACACAGATTTGTAGCGC 59.520 45.455 0.00 0.00 35.25 5.92
91 92 1.067693 TCACACAGATTTGTAGCGCG 58.932 50.000 0.00 0.00 35.25 6.86
92 93 0.095245 CACACAGATTTGTAGCGCGG 59.905 55.000 8.83 0.00 35.25 6.46
93 94 1.019278 ACACAGATTTGTAGCGCGGG 61.019 55.000 8.83 0.00 35.25 6.13
94 95 1.019278 CACAGATTTGTAGCGCGGGT 61.019 55.000 8.83 0.00 35.25 5.28
95 96 0.321298 ACAGATTTGTAGCGCGGGTT 60.321 50.000 8.83 0.00 35.25 4.11
96 97 1.066716 ACAGATTTGTAGCGCGGGTTA 60.067 47.619 8.83 0.00 35.25 2.85
97 98 2.004017 CAGATTTGTAGCGCGGGTTAA 58.996 47.619 8.83 0.00 0.00 2.01
98 99 2.612212 CAGATTTGTAGCGCGGGTTAAT 59.388 45.455 8.83 0.00 0.00 1.40
99 100 3.064820 CAGATTTGTAGCGCGGGTTAATT 59.935 43.478 8.83 0.00 0.00 1.40
100 101 4.271533 CAGATTTGTAGCGCGGGTTAATTA 59.728 41.667 8.83 0.00 0.00 1.40
101 102 4.510340 AGATTTGTAGCGCGGGTTAATTAG 59.490 41.667 8.83 0.00 0.00 1.73
102 103 3.523606 TTGTAGCGCGGGTTAATTAGA 57.476 42.857 8.83 0.00 0.00 2.10
103 104 2.813061 TGTAGCGCGGGTTAATTAGAC 58.187 47.619 8.83 0.00 0.00 2.59
104 105 2.166050 TGTAGCGCGGGTTAATTAGACA 59.834 45.455 8.83 0.00 0.00 3.41
105 106 2.389962 AGCGCGGGTTAATTAGACAA 57.610 45.000 8.83 0.00 0.00 3.18
106 107 2.277084 AGCGCGGGTTAATTAGACAAG 58.723 47.619 8.83 0.00 0.00 3.16
107 108 2.004733 GCGCGGGTTAATTAGACAAGT 58.995 47.619 8.83 0.00 0.00 3.16
108 109 2.222953 GCGCGGGTTAATTAGACAAGTG 60.223 50.000 8.83 0.00 0.00 3.16
109 110 2.350498 CGCGGGTTAATTAGACAAGTGG 59.650 50.000 0.00 0.00 0.00 4.00
110 111 2.681344 GCGGGTTAATTAGACAAGTGGG 59.319 50.000 0.00 0.00 0.00 4.61
111 112 2.681344 CGGGTTAATTAGACAAGTGGGC 59.319 50.000 0.00 0.00 0.00 5.36
112 113 3.692690 GGGTTAATTAGACAAGTGGGCA 58.307 45.455 0.00 0.00 0.00 5.36
113 114 3.694566 GGGTTAATTAGACAAGTGGGCAG 59.305 47.826 0.00 0.00 0.00 4.85
114 115 3.694566 GGTTAATTAGACAAGTGGGCAGG 59.305 47.826 0.00 0.00 0.00 4.85
115 116 2.514458 AATTAGACAAGTGGGCAGGG 57.486 50.000 0.00 0.00 0.00 4.45
116 117 1.372501 ATTAGACAAGTGGGCAGGGT 58.627 50.000 0.00 0.00 0.00 4.34
117 118 0.400213 TTAGACAAGTGGGCAGGGTG 59.600 55.000 0.00 0.00 0.00 4.61
118 119 0.766674 TAGACAAGTGGGCAGGGTGT 60.767 55.000 0.00 0.00 0.00 4.16
119 120 1.152756 GACAAGTGGGCAGGGTGTT 60.153 57.895 0.00 0.00 0.00 3.32
120 121 0.755327 GACAAGTGGGCAGGGTGTTT 60.755 55.000 0.00 0.00 0.00 2.83
121 122 0.325203 ACAAGTGGGCAGGGTGTTTT 60.325 50.000 0.00 0.00 0.00 2.43
122 123 0.829990 CAAGTGGGCAGGGTGTTTTT 59.170 50.000 0.00 0.00 0.00 1.94
141 142 3.784701 TTTTTGTAAAAGTGCAGGCGA 57.215 38.095 0.00 0.00 0.00 5.54
142 143 3.347958 TTTTGTAAAAGTGCAGGCGAG 57.652 42.857 0.00 0.00 0.00 5.03
143 144 1.234821 TTGTAAAAGTGCAGGCGAGG 58.765 50.000 0.00 0.00 0.00 4.63
144 145 0.394938 TGTAAAAGTGCAGGCGAGGA 59.605 50.000 0.00 0.00 0.00 3.71
145 146 0.796927 GTAAAAGTGCAGGCGAGGAC 59.203 55.000 0.00 0.00 0.00 3.85
146 147 0.669318 TAAAAGTGCAGGCGAGGACG 60.669 55.000 0.00 0.00 42.93 4.79
147 148 3.883744 AAAGTGCAGGCGAGGACGG 62.884 63.158 0.00 0.00 40.15 4.79
151 152 4.803426 GCAGGCGAGGACGGTCTG 62.803 72.222 8.23 0.00 40.15 3.51
152 153 4.135153 CAGGCGAGGACGGTCTGG 62.135 72.222 8.23 0.00 40.15 3.86
156 157 4.436998 CGAGGACGGTCTGGCCAC 62.437 72.222 6.25 0.00 36.97 5.01
157 158 4.436998 GAGGACGGTCTGGCCACG 62.437 72.222 12.30 12.30 36.97 4.94
170 171 2.259204 CCACGTGGCTGCCAATTG 59.741 61.111 25.23 21.60 34.18 2.32
171 172 2.563798 CCACGTGGCTGCCAATTGT 61.564 57.895 25.23 18.89 34.18 2.71
172 173 1.081242 CACGTGGCTGCCAATTGTC 60.081 57.895 25.23 9.68 34.18 3.18
173 174 2.176546 CGTGGCTGCCAATTGTCG 59.823 61.111 25.23 18.30 34.18 4.35
174 175 2.126346 GTGGCTGCCAATTGTCGC 60.126 61.111 25.23 5.06 34.18 5.19
175 176 3.736100 TGGCTGCCAATTGTCGCG 61.736 61.111 21.08 0.00 0.00 5.87
177 178 4.107051 GCTGCCAATTGTCGCGCT 62.107 61.111 5.56 0.00 0.00 5.92
178 179 2.202388 CTGCCAATTGTCGCGCTG 60.202 61.111 5.56 0.00 0.00 5.18
179 180 2.969806 CTGCCAATTGTCGCGCTGT 61.970 57.895 5.56 0.00 0.00 4.40
180 181 2.502510 GCCAATTGTCGCGCTGTG 60.503 61.111 5.56 0.00 0.00 3.66
181 182 2.965147 GCCAATTGTCGCGCTGTGA 61.965 57.895 5.56 0.00 0.00 3.58
182 183 1.796151 CCAATTGTCGCGCTGTGAT 59.204 52.632 5.56 0.00 0.00 3.06
183 184 1.006086 CCAATTGTCGCGCTGTGATA 58.994 50.000 5.56 0.00 0.00 2.15
184 185 1.004610 CCAATTGTCGCGCTGTGATAG 60.005 52.381 5.56 0.00 0.00 2.08
185 186 1.004610 CAATTGTCGCGCTGTGATAGG 60.005 52.381 5.56 0.00 0.00 2.57
186 187 1.154205 ATTGTCGCGCTGTGATAGGC 61.154 55.000 5.56 0.00 0.00 3.93
187 188 2.962253 GTCGCGCTGTGATAGGCC 60.962 66.667 5.56 0.00 0.00 5.19
188 189 4.221422 TCGCGCTGTGATAGGCCC 62.221 66.667 5.56 0.00 0.00 5.80
191 192 4.609018 CGCTGTGATAGGCCCGGG 62.609 72.222 19.09 19.09 0.00 5.73
192 193 3.161450 GCTGTGATAGGCCCGGGA 61.161 66.667 29.31 2.74 0.00 5.14
193 194 2.822399 CTGTGATAGGCCCGGGAC 59.178 66.667 29.31 26.25 0.00 4.46
194 195 2.766651 TGTGATAGGCCCGGGACC 60.767 66.667 27.30 24.26 0.00 4.46
195 196 2.766651 GTGATAGGCCCGGGACCA 60.767 66.667 27.30 11.34 0.00 4.02
196 197 2.041430 TGATAGGCCCGGGACCAA 59.959 61.111 27.30 13.36 0.00 3.67
197 198 1.616930 TGATAGGCCCGGGACCAAA 60.617 57.895 27.30 16.28 0.00 3.28
198 199 0.991355 TGATAGGCCCGGGACCAAAT 60.991 55.000 27.30 20.11 0.00 2.32
199 200 0.250770 GATAGGCCCGGGACCAAATC 60.251 60.000 27.30 23.59 0.00 2.17
200 201 2.052047 ATAGGCCCGGGACCAAATCG 62.052 60.000 27.30 0.00 0.00 3.34
201 202 4.419921 GGCCCGGGACCAAATCGT 62.420 66.667 29.31 0.00 0.00 3.73
202 203 2.822701 GCCCGGGACCAAATCGTC 60.823 66.667 29.31 0.00 0.00 4.20
203 204 2.666207 CCCGGGACCAAATCGTCA 59.334 61.111 18.48 0.00 34.24 4.35
204 205 1.743995 CCCGGGACCAAATCGTCAC 60.744 63.158 18.48 0.00 34.24 3.67
205 206 1.004320 CCGGGACCAAATCGTCACA 60.004 57.895 0.00 0.00 35.82 3.58
206 207 0.392461 CCGGGACCAAATCGTCACAT 60.392 55.000 0.00 0.00 35.82 3.21
207 208 1.134640 CCGGGACCAAATCGTCACATA 60.135 52.381 0.00 0.00 35.82 2.29
208 209 1.931172 CGGGACCAAATCGTCACATAC 59.069 52.381 0.00 0.00 35.82 2.39
209 210 2.675603 CGGGACCAAATCGTCACATACA 60.676 50.000 0.00 0.00 35.82 2.29
210 211 2.936498 GGGACCAAATCGTCACATACAG 59.064 50.000 0.00 0.00 36.13 2.74
211 212 3.596214 GGACCAAATCGTCACATACAGT 58.404 45.455 0.00 0.00 34.24 3.55
221 222 2.995466 CACATACAGTGCAAGTTGGG 57.005 50.000 4.75 0.00 42.15 4.12
222 223 1.541147 CACATACAGTGCAAGTTGGGG 59.459 52.381 4.75 0.00 42.15 4.96
223 224 1.144913 ACATACAGTGCAAGTTGGGGT 59.855 47.619 4.75 0.00 0.00 4.95
224 225 2.373836 ACATACAGTGCAAGTTGGGGTA 59.626 45.455 4.75 0.00 0.00 3.69
225 226 3.010138 ACATACAGTGCAAGTTGGGGTAT 59.990 43.478 4.75 0.00 0.00 2.73
226 227 1.909700 ACAGTGCAAGTTGGGGTATG 58.090 50.000 4.75 0.00 0.00 2.39
227 228 1.176527 CAGTGCAAGTTGGGGTATGG 58.823 55.000 4.75 0.00 0.00 2.74
228 229 0.777446 AGTGCAAGTTGGGGTATGGT 59.223 50.000 4.75 0.00 0.00 3.55
229 230 0.887933 GTGCAAGTTGGGGTATGGTG 59.112 55.000 4.75 0.00 0.00 4.17
230 231 0.251564 TGCAAGTTGGGGTATGGTGG 60.252 55.000 4.75 0.00 0.00 4.61
231 232 0.039035 GCAAGTTGGGGTATGGTGGA 59.961 55.000 4.75 0.00 0.00 4.02
232 233 1.955208 GCAAGTTGGGGTATGGTGGAG 60.955 57.143 4.75 0.00 0.00 3.86
233 234 1.354368 CAAGTTGGGGTATGGTGGAGT 59.646 52.381 0.00 0.00 0.00 3.85
234 235 1.755200 AGTTGGGGTATGGTGGAGTT 58.245 50.000 0.00 0.00 0.00 3.01
235 236 1.354368 AGTTGGGGTATGGTGGAGTTG 59.646 52.381 0.00 0.00 0.00 3.16
236 237 0.039035 TTGGGGTATGGTGGAGTTGC 59.961 55.000 0.00 0.00 0.00 4.17
237 238 1.136961 TGGGGTATGGTGGAGTTGCA 61.137 55.000 0.00 0.00 0.00 4.08
238 239 0.258774 GGGGTATGGTGGAGTTGCAT 59.741 55.000 0.00 0.00 0.00 3.96
239 240 1.341976 GGGGTATGGTGGAGTTGCATT 60.342 52.381 0.00 0.00 0.00 3.56
240 241 2.456577 GGGTATGGTGGAGTTGCATTT 58.543 47.619 0.00 0.00 0.00 2.32
241 242 2.831526 GGGTATGGTGGAGTTGCATTTT 59.168 45.455 0.00 0.00 0.00 1.82
242 243 4.020543 GGGTATGGTGGAGTTGCATTTTA 58.979 43.478 0.00 0.00 0.00 1.52
243 244 4.142249 GGGTATGGTGGAGTTGCATTTTAC 60.142 45.833 0.00 0.00 0.00 2.01
244 245 4.461081 GGTATGGTGGAGTTGCATTTTACA 59.539 41.667 0.00 0.00 0.00 2.41
245 246 5.047660 GGTATGGTGGAGTTGCATTTTACAA 60.048 40.000 0.00 0.00 0.00 2.41
246 247 4.582701 TGGTGGAGTTGCATTTTACAAG 57.417 40.909 0.00 0.00 0.00 3.16
247 248 3.957497 TGGTGGAGTTGCATTTTACAAGT 59.043 39.130 0.00 0.00 33.41 3.16
248 249 4.404073 TGGTGGAGTTGCATTTTACAAGTT 59.596 37.500 0.00 0.00 30.90 2.66
249 250 5.105146 TGGTGGAGTTGCATTTTACAAGTTT 60.105 36.000 0.00 0.00 30.90 2.66
250 251 5.234116 GGTGGAGTTGCATTTTACAAGTTTG 59.766 40.000 0.00 0.00 30.90 2.93
251 252 6.039616 GTGGAGTTGCATTTTACAAGTTTGA 58.960 36.000 0.00 0.00 30.90 2.69
252 253 6.701400 GTGGAGTTGCATTTTACAAGTTTGAT 59.299 34.615 0.00 0.00 30.90 2.57
253 254 7.865385 GTGGAGTTGCATTTTACAAGTTTGATA 59.135 33.333 0.00 0.00 30.90 2.15
254 255 7.865385 TGGAGTTGCATTTTACAAGTTTGATAC 59.135 33.333 0.00 0.00 30.90 2.24
255 256 8.082242 GGAGTTGCATTTTACAAGTTTGATACT 58.918 33.333 0.00 0.00 39.32 2.12
275 276 9.571816 TGATACTAAATTATCACATTCCATGCA 57.428 29.630 0.00 0.00 34.22 3.96
278 279 8.297470 ACTAAATTATCACATTCCATGCAAGT 57.703 30.769 0.00 0.00 0.00 3.16
279 280 8.752187 ACTAAATTATCACATTCCATGCAAGTT 58.248 29.630 0.00 0.00 0.00 2.66
282 283 6.698008 TTATCACATTCCATGCAAGTTAGG 57.302 37.500 0.00 0.00 0.00 2.69
283 284 3.355378 TCACATTCCATGCAAGTTAGGG 58.645 45.455 0.00 0.00 0.00 3.53
284 285 3.091545 CACATTCCATGCAAGTTAGGGT 58.908 45.455 0.00 0.00 0.00 4.34
285 286 4.018870 TCACATTCCATGCAAGTTAGGGTA 60.019 41.667 0.00 0.00 0.00 3.69
286 287 4.096382 CACATTCCATGCAAGTTAGGGTAC 59.904 45.833 0.00 0.00 0.00 3.34
301 302 1.830279 GGTACCTGGGGTGCTTTTAC 58.170 55.000 4.06 0.00 38.37 2.01
302 303 1.615116 GGTACCTGGGGTGCTTTTACC 60.615 57.143 4.06 0.00 38.37 2.85
303 304 1.353358 GTACCTGGGGTGCTTTTACCT 59.647 52.381 0.00 0.00 40.66 3.08
304 305 0.404426 ACCTGGGGTGCTTTTACCTC 59.596 55.000 0.00 0.00 41.82 3.85
315 316 8.315482 GGGGTGCTTTTACCTCATTATTTTAAA 58.685 33.333 0.00 0.00 41.08 1.52
354 355 7.812669 GGTTACAAGGATGTTTAGACCAAATTG 59.187 37.037 0.00 0.00 41.05 2.32
402 403 1.178534 ACTTGAATTGTGGCACCCCG 61.179 55.000 16.26 0.00 0.00 5.73
419 420 2.302260 CCCGAGTGCTGAGATTCTAGA 58.698 52.381 0.00 0.00 0.00 2.43
420 421 2.890311 CCCGAGTGCTGAGATTCTAGAT 59.110 50.000 0.00 0.00 0.00 1.98
510 511 2.942796 TTCTGCATCCGACGGCTGT 61.943 57.895 18.27 0.00 0.00 4.40
523 524 1.427819 GGCTGTAAACGAATGGCCG 59.572 57.895 0.00 0.00 0.00 6.13
574 575 6.381420 TGACCTCTAGTCTATCCCTTTCTTTG 59.619 42.308 0.00 0.00 46.46 2.77
575 576 6.503944 ACCTCTAGTCTATCCCTTTCTTTGA 58.496 40.000 0.00 0.00 0.00 2.69
665 667 0.676184 TGCTCTCAGAGTGTGGTGTC 59.324 55.000 2.93 0.00 31.39 3.67
691 693 5.411977 ACTTCTTCTGCATGTCAATCAAGAG 59.588 40.000 0.00 0.44 0.00 2.85
693 695 4.934001 TCTTCTGCATGTCAATCAAGAGTC 59.066 41.667 0.00 0.00 0.00 3.36
730 740 2.156098 ACAGACATGGCAGGGGTGT 61.156 57.895 0.00 3.31 0.00 4.16
731 741 1.676635 CAGACATGGCAGGGGTGTG 60.677 63.158 0.00 1.81 0.00 3.82
732 742 2.361610 GACATGGCAGGGGTGTGG 60.362 66.667 3.46 0.00 0.00 4.17
846 865 4.573950 GCGGCGCATTCATTGGGG 62.574 66.667 29.21 0.00 38.66 4.96
847 866 2.828095 CGGCGCATTCATTGGGGA 60.828 61.111 10.83 0.00 38.66 4.81
938 994 2.271800 GCCTATATAGATGTGCACCGC 58.728 52.381 15.69 6.13 0.00 5.68
939 995 2.353704 GCCTATATAGATGTGCACCGCA 60.354 50.000 15.69 0.00 35.60 5.69
955 1011 4.798433 CACCCTGTGTGCAAGCTA 57.202 55.556 0.00 0.00 38.34 3.32
983 1039 9.599322 GATTCATTCCTATATTTAGCAACAACG 57.401 33.333 0.00 0.00 0.00 4.10
986 1042 3.805422 TCCTATATTTAGCAACAACGCGG 59.195 43.478 12.47 0.00 36.85 6.46
1198 2904 4.747605 GCAGCTCCACTAACTAATTAGCTC 59.252 45.833 12.54 0.00 41.48 4.09
1202 2908 5.277857 TCCACTAACTAATTAGCTCTGCC 57.722 43.478 12.54 0.00 41.48 4.85
1367 3073 3.710722 CTCCCGCTGCTCAACCCT 61.711 66.667 0.00 0.00 0.00 4.34
1411 3117 4.379243 CTTCCTGCCGTGCTCCGT 62.379 66.667 0.00 0.00 33.66 4.69
1529 3235 0.844661 TGGTCTGCCTGGTGGGTAAT 60.845 55.000 0.00 0.00 37.43 1.89
1541 3247 2.171027 GGTGGGTAATATGGTGACGGAA 59.829 50.000 0.00 0.00 0.00 4.30
1765 3471 1.352882 CGCAACGGCATGGTACGTAA 61.353 55.000 0.00 0.00 43.31 3.18
1766 3472 1.011333 GCAACGGCATGGTACGTAAT 58.989 50.000 0.00 0.00 43.31 1.89
1767 3473 2.203401 GCAACGGCATGGTACGTAATA 58.797 47.619 0.00 0.00 43.31 0.98
1768 3474 2.803956 GCAACGGCATGGTACGTAATAT 59.196 45.455 0.00 0.00 43.31 1.28
1769 3475 3.989167 GCAACGGCATGGTACGTAATATA 59.011 43.478 0.00 0.00 43.31 0.86
1792 3502 2.223688 GCACATAAACACAGTTGCACCA 60.224 45.455 0.00 0.00 0.00 4.17
2180 3901 4.742201 GGCAGCCTGTTCGAGCGA 62.742 66.667 3.29 0.00 0.00 4.93
2327 4048 2.171725 GGAATACGTGTGCGGGCTC 61.172 63.158 0.00 0.00 43.45 4.70
2447 4168 2.036256 GTGGGCTGAAGCATGGGT 59.964 61.111 4.43 0.00 44.36 4.51
2471 4192 7.381678 GGTTTCTATGCCTTATACGTAGACTTG 59.618 40.741 0.08 0.00 35.81 3.16
2485 4214 4.433805 CGTAGACTTGCGTATGTTTGGTTC 60.434 45.833 0.00 0.00 0.00 3.62
2538 4268 0.922243 TCCCCTCCGCCCCTAAAAAT 60.922 55.000 0.00 0.00 0.00 1.82
2542 4272 2.173996 CCCTCCGCCCCTAAAAATAAGA 59.826 50.000 0.00 0.00 0.00 2.10
2544 4274 3.883489 CCTCCGCCCCTAAAAATAAGAAG 59.117 47.826 0.00 0.00 0.00 2.85
2545 4275 3.883489 CTCCGCCCCTAAAAATAAGAAGG 59.117 47.826 0.00 0.00 0.00 3.46
2546 4276 3.267551 TCCGCCCCTAAAAATAAGAAGGT 59.732 43.478 0.00 0.00 0.00 3.50
2547 4277 4.021229 CCGCCCCTAAAAATAAGAAGGTT 58.979 43.478 0.00 0.00 0.00 3.50
2551 4281 6.771267 CGCCCCTAAAAATAAGAAGGTTAGAT 59.229 38.462 0.00 0.00 0.00 1.98
2552 4282 7.284716 CGCCCCTAAAAATAAGAAGGTTAGATT 59.715 37.037 0.00 0.00 0.00 2.40
2553 4283 8.630917 GCCCCTAAAAATAAGAAGGTTAGATTC 58.369 37.037 0.00 0.00 0.00 2.52
2554 4284 9.132923 CCCCTAAAAATAAGAAGGTTAGATTCC 57.867 37.037 0.00 0.00 0.00 3.01
2555 4285 9.132923 CCCTAAAAATAAGAAGGTTAGATTCCC 57.867 37.037 0.00 0.00 0.00 3.97
2556 4286 9.132923 CCTAAAAATAAGAAGGTTAGATTCCCC 57.867 37.037 0.00 0.00 0.00 4.81
2557 4287 9.922477 CTAAAAATAAGAAGGTTAGATTCCCCT 57.078 33.333 0.00 0.00 0.00 4.79
2558 4288 8.824756 AAAAATAAGAAGGTTAGATTCCCCTC 57.175 34.615 0.00 0.00 0.00 4.30
2559 4289 7.773099 AAATAAGAAGGTTAGATTCCCCTCT 57.227 36.000 0.00 0.00 0.00 3.69
2560 4290 6.755542 ATAAGAAGGTTAGATTCCCCTCTG 57.244 41.667 0.00 0.00 0.00 3.35
2561 4291 3.388913 AGAAGGTTAGATTCCCCTCTGG 58.611 50.000 0.00 0.00 0.00 3.86
2562 4292 3.014110 AGAAGGTTAGATTCCCCTCTGGA 59.986 47.826 0.00 0.00 43.18 3.86
2598 4420 8.649973 ATTCCTGTAAACGTTGATCTTATCTC 57.350 34.615 0.00 0.00 0.00 2.75
2625 4450 6.083630 GCAATAAAGCACGTTGTGATTCTAA 58.916 36.000 0.52 0.00 41.41 2.10
2676 4501 3.420893 CTTACCTGCCTGGATGAAAACA 58.579 45.455 0.00 0.00 39.71 2.83
2694 4519 5.848833 AAACAGACTACTCTATTACCGGG 57.151 43.478 6.32 0.00 0.00 5.73
2699 4524 5.593502 CAGACTACTCTATTACCGGGTTTCT 59.406 44.000 4.31 0.00 0.00 2.52
2733 4563 2.570415 TCCGGTTTATTGTTGCTCCA 57.430 45.000 0.00 0.00 0.00 3.86
2734 4564 2.432444 TCCGGTTTATTGTTGCTCCAG 58.568 47.619 0.00 0.00 0.00 3.86
2735 4565 2.159382 CCGGTTTATTGTTGCTCCAGT 58.841 47.619 0.00 0.00 0.00 4.00
2736 4566 2.161609 CCGGTTTATTGTTGCTCCAGTC 59.838 50.000 0.00 0.00 0.00 3.51
2744 4574 2.378038 TGTTGCTCCAGTCTTTGCTTT 58.622 42.857 0.00 0.00 0.00 3.51
2755 4585 5.278022 CCAGTCTTTGCTTTCTAACCAAGAC 60.278 44.000 0.00 0.00 32.51 3.01
2760 4590 6.260936 TCTTTGCTTTCTAACCAAGACTGAAG 59.739 38.462 0.00 0.00 32.51 3.02
2791 4621 1.351017 TCCTGGGTAAGCCTGAAGTTG 59.649 52.381 0.00 0.00 34.45 3.16
2794 4624 2.554032 CTGGGTAAGCCTGAAGTTGTTG 59.446 50.000 0.00 0.00 34.45 3.33
2800 4630 5.518847 GGTAAGCCTGAAGTTGTTGTTTTTC 59.481 40.000 0.00 0.00 0.00 2.29
2805 4638 4.380023 CCTGAAGTTGTTGTTTTTCGTGGA 60.380 41.667 0.00 0.00 0.00 4.02
2827 4660 8.233190 GTGGATGAGTCTGAAGTTATTTTGAAG 58.767 37.037 0.00 0.00 0.00 3.02
2829 4662 6.560253 TGAGTCTGAAGTTATTTTGAAGCC 57.440 37.500 0.00 0.00 0.00 4.35
2851 4684 6.548622 AGCCATGATAAGCAAGAAACACATAT 59.451 34.615 0.00 0.00 0.00 1.78
2853 4686 7.255381 GCCATGATAAGCAAGAAACACATATCT 60.255 37.037 0.00 0.00 0.00 1.98
2888 4722 5.470777 AGATAGTTTCTCCCTAGTCGATTCG 59.529 44.000 0.00 0.00 0.00 3.34
2953 4817 7.778470 AACTCAGCTAGTATCACTTAAATGC 57.222 36.000 0.00 0.00 37.50 3.56
2992 4856 6.912203 TTTTTCGGGGAAAAACTTTCAATC 57.088 33.333 11.12 0.00 43.59 2.67
2993 4857 5.862678 TTTCGGGGAAAAACTTTCAATCT 57.137 34.783 1.88 0.00 0.00 2.40
2994 4858 6.963083 TTTCGGGGAAAAACTTTCAATCTA 57.037 33.333 1.88 0.00 0.00 1.98
2995 4859 7.533289 TTTCGGGGAAAAACTTTCAATCTAT 57.467 32.000 1.88 0.00 0.00 1.98
2996 4860 7.533289 TTCGGGGAAAAACTTTCAATCTATT 57.467 32.000 1.88 0.00 0.00 1.73
2997 4861 7.153217 TCGGGGAAAAACTTTCAATCTATTC 57.847 36.000 1.88 0.00 0.00 1.75
2998 4862 6.717540 TCGGGGAAAAACTTTCAATCTATTCA 59.282 34.615 1.88 0.00 0.00 2.57
2999 4863 7.396055 TCGGGGAAAAACTTTCAATCTATTCAT 59.604 33.333 1.88 0.00 0.00 2.57
3000 4864 7.702348 CGGGGAAAAACTTTCAATCTATTCATC 59.298 37.037 1.88 0.00 0.00 2.92
3001 4865 8.753133 GGGGAAAAACTTTCAATCTATTCATCT 58.247 33.333 1.88 0.00 0.00 2.90
3062 4926 6.937436 AAATTACATCCAGATCCGTAAACC 57.063 37.500 0.00 0.00 0.00 3.27
3063 4927 5.623956 ATTACATCCAGATCCGTAAACCA 57.376 39.130 0.00 0.00 0.00 3.67
3064 4928 3.261981 ACATCCAGATCCGTAAACCAC 57.738 47.619 0.00 0.00 0.00 4.16
3065 4929 2.093128 ACATCCAGATCCGTAAACCACC 60.093 50.000 0.00 0.00 0.00 4.61
3066 4930 1.946984 TCCAGATCCGTAAACCACCT 58.053 50.000 0.00 0.00 0.00 4.00
3067 4931 3.104519 TCCAGATCCGTAAACCACCTA 57.895 47.619 0.00 0.00 0.00 3.08
3068 4932 3.028850 TCCAGATCCGTAAACCACCTAG 58.971 50.000 0.00 0.00 0.00 3.02
3069 4933 2.483188 CCAGATCCGTAAACCACCTAGC 60.483 54.545 0.00 0.00 0.00 3.42
3070 4934 2.431057 CAGATCCGTAAACCACCTAGCT 59.569 50.000 0.00 0.00 0.00 3.32
3071 4935 3.635373 CAGATCCGTAAACCACCTAGCTA 59.365 47.826 0.00 0.00 0.00 3.32
3072 4936 3.635836 AGATCCGTAAACCACCTAGCTAC 59.364 47.826 0.00 0.00 0.00 3.58
3073 4937 1.745087 TCCGTAAACCACCTAGCTACG 59.255 52.381 0.00 0.00 36.10 3.51
3074 4938 1.745087 CCGTAAACCACCTAGCTACGA 59.255 52.381 1.65 0.00 38.03 3.43
3075 4939 2.478539 CCGTAAACCACCTAGCTACGAC 60.479 54.545 1.65 0.00 38.03 4.34
3076 4940 2.421424 CGTAAACCACCTAGCTACGACT 59.579 50.000 0.00 0.00 38.03 4.18
3077 4941 3.623060 CGTAAACCACCTAGCTACGACTA 59.377 47.826 0.00 0.00 38.03 2.59
3078 4942 4.494855 CGTAAACCACCTAGCTACGACTAC 60.495 50.000 0.00 0.00 38.03 2.73
3079 4943 2.795231 ACCACCTAGCTACGACTACA 57.205 50.000 0.00 0.00 0.00 2.74
3080 4944 3.077484 ACCACCTAGCTACGACTACAA 57.923 47.619 0.00 0.00 0.00 2.41
3081 4945 3.015327 ACCACCTAGCTACGACTACAAG 58.985 50.000 0.00 0.00 0.00 3.16
3082 4946 2.223525 CCACCTAGCTACGACTACAAGC 60.224 54.545 0.00 0.00 36.48 4.01
3083 4947 2.422479 CACCTAGCTACGACTACAAGCA 59.578 50.000 0.00 0.00 38.75 3.91
3084 4948 2.422832 ACCTAGCTACGACTACAAGCAC 59.577 50.000 0.00 0.00 38.75 4.40
3097 4961 1.242076 CAAGCACAAGAACTCCCCAG 58.758 55.000 0.00 0.00 0.00 4.45
3104 4968 2.747855 GAACTCCCCAGCGGCTTG 60.748 66.667 0.00 0.00 0.00 4.01
3109 4973 4.974721 CCCCAGCGGCTTGTTGGT 62.975 66.667 0.00 0.00 46.85 3.67
3127 4991 2.916934 TGGTAGGCCAACAGGAGTTTAT 59.083 45.455 5.01 0.00 42.83 1.40
3128 4992 4.105577 TGGTAGGCCAACAGGAGTTTATA 58.894 43.478 5.01 0.00 42.83 0.98
3129 4993 4.080751 TGGTAGGCCAACAGGAGTTTATAC 60.081 45.833 5.01 0.00 42.83 1.47
3130 4994 3.261981 AGGCCAACAGGAGTTTATACG 57.738 47.619 5.01 0.00 35.28 3.06
3132 4996 2.934553 GGCCAACAGGAGTTTATACGAC 59.065 50.000 0.00 0.00 35.28 4.34
3133 4997 3.592059 GCCAACAGGAGTTTATACGACA 58.408 45.455 0.00 0.00 35.28 4.35
3135 4999 4.092968 GCCAACAGGAGTTTATACGACAAG 59.907 45.833 0.00 0.00 35.28 3.16
3136 5000 4.630069 CCAACAGGAGTTTATACGACAAGG 59.370 45.833 0.00 0.00 35.28 3.61
3137 5001 5.235516 CAACAGGAGTTTATACGACAAGGT 58.764 41.667 0.00 0.00 35.28 3.50
3139 5003 4.181578 CAGGAGTTTATACGACAAGGTGG 58.818 47.826 0.00 0.00 0.00 4.61
3141 5005 3.196254 GGAGTTTATACGACAAGGTGGGA 59.804 47.826 0.00 0.00 0.00 4.37
3142 5006 4.141779 GGAGTTTATACGACAAGGTGGGAT 60.142 45.833 0.00 0.00 0.00 3.85
3148 5012 5.723672 ATACGACAAGGTGGGATATAGTG 57.276 43.478 0.00 0.00 0.00 2.74
3149 5013 3.371965 ACGACAAGGTGGGATATAGTGT 58.628 45.455 0.00 0.00 0.00 3.55
3150 5014 3.132289 ACGACAAGGTGGGATATAGTGTG 59.868 47.826 0.00 0.00 0.00 3.82
3152 5016 4.382685 CGACAAGGTGGGATATAGTGTGTT 60.383 45.833 0.00 0.00 0.00 3.32
3153 5017 5.163488 CGACAAGGTGGGATATAGTGTGTTA 60.163 44.000 0.00 0.00 0.00 2.41
3155 5019 7.208064 ACAAGGTGGGATATAGTGTGTTATT 57.792 36.000 0.00 0.00 0.00 1.40
3160 5024 7.039882 GGTGGGATATAGTGTGTTATTATCCG 58.960 42.308 0.00 0.00 34.40 4.18
3162 5026 8.742777 GTGGGATATAGTGTGTTATTATCCGTA 58.257 37.037 0.00 0.00 34.40 4.02
3204 5487 7.744087 AAAACTTGCAGATACATACTTCACA 57.256 32.000 0.00 0.00 0.00 3.58
3207 5490 4.817318 TGCAGATACATACTTCACACCA 57.183 40.909 0.00 0.00 0.00 4.17
3247 5531 8.716909 GCCATGCTAATCTCTAGAAATTTCTAC 58.283 37.037 21.46 11.26 38.70 2.59
3248 5532 9.770097 CCATGCTAATCTCTAGAAATTTCTACA 57.230 33.333 21.46 15.70 38.70 2.74
3256 5540 9.732130 ATCTCTAGAAATTTCTACAGTTTTGCT 57.268 29.630 21.46 0.00 38.70 3.91
3261 5545 8.803201 AGAAATTTCTACAGTTTTGCTAAAGC 57.197 30.769 19.17 0.00 37.38 3.51
3262 5546 8.413229 AGAAATTTCTACAGTTTTGCTAAAGCA 58.587 29.630 19.17 0.00 42.03 3.91
3287 5571 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
3288 5572 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
3297 5581 7.026631 TGCCATAAGTATTGCACATCTAAAC 57.973 36.000 0.00 0.00 30.49 2.01
3298 5582 6.039270 TGCCATAAGTATTGCACATCTAAACC 59.961 38.462 0.00 0.00 30.49 3.27
3299 5583 6.515035 GCCATAAGTATTGCACATCTAAACCC 60.515 42.308 0.00 0.00 0.00 4.11
3300 5584 6.016276 CCATAAGTATTGCACATCTAAACCCC 60.016 42.308 0.00 0.00 0.00 4.95
3301 5585 4.584638 AGTATTGCACATCTAAACCCCA 57.415 40.909 0.00 0.00 0.00 4.96
3302 5586 5.129368 AGTATTGCACATCTAAACCCCAT 57.871 39.130 0.00 0.00 0.00 4.00
3303 5587 5.518865 AGTATTGCACATCTAAACCCCATT 58.481 37.500 0.00 0.00 0.00 3.16
3304 5588 5.957774 AGTATTGCACATCTAAACCCCATTT 59.042 36.000 0.00 0.00 0.00 2.32
3305 5589 4.799564 TTGCACATCTAAACCCCATTTC 57.200 40.909 0.00 0.00 0.00 2.17
3306 5590 3.772387 TGCACATCTAAACCCCATTTCA 58.228 40.909 0.00 0.00 0.00 2.69
3307 5591 4.352009 TGCACATCTAAACCCCATTTCAT 58.648 39.130 0.00 0.00 0.00 2.57
3308 5592 4.776837 TGCACATCTAAACCCCATTTCATT 59.223 37.500 0.00 0.00 0.00 2.57
3309 5593 5.111293 GCACATCTAAACCCCATTTCATTG 58.889 41.667 0.00 0.00 0.00 2.82
3310 5594 5.105392 GCACATCTAAACCCCATTTCATTGA 60.105 40.000 0.00 0.00 0.00 2.57
3311 5595 6.407299 GCACATCTAAACCCCATTTCATTGAT 60.407 38.462 0.00 0.00 0.00 2.57
3312 5596 7.205297 CACATCTAAACCCCATTTCATTGATC 58.795 38.462 0.00 0.00 0.00 2.92
3313 5597 7.069085 CACATCTAAACCCCATTTCATTGATCT 59.931 37.037 0.00 0.00 0.00 2.75
3314 5598 7.620888 ACATCTAAACCCCATTTCATTGATCTT 59.379 33.333 0.00 0.00 0.00 2.40
3315 5599 9.135189 CATCTAAACCCCATTTCATTGATCTTA 57.865 33.333 0.00 0.00 0.00 2.10
3316 5600 8.519799 TCTAAACCCCATTTCATTGATCTTAC 57.480 34.615 0.00 0.00 0.00 2.34
3317 5601 8.112822 TCTAAACCCCATTTCATTGATCTTACA 58.887 33.333 0.00 0.00 0.00 2.41
3318 5602 7.738437 AAACCCCATTTCATTGATCTTACAT 57.262 32.000 0.00 0.00 0.00 2.29
3319 5603 6.966534 ACCCCATTTCATTGATCTTACATC 57.033 37.500 0.00 0.00 0.00 3.06
3320 5604 6.434302 ACCCCATTTCATTGATCTTACATCA 58.566 36.000 0.00 0.00 0.00 3.07
3321 5605 6.896860 ACCCCATTTCATTGATCTTACATCAA 59.103 34.615 0.00 0.00 41.59 2.57
3322 5606 7.069085 ACCCCATTTCATTGATCTTACATCAAG 59.931 37.037 3.59 0.00 40.80 3.02
3337 5621 9.685276 TCTTACATCAAGATTTGTGTGGATATT 57.315 29.630 0.00 0.00 38.39 1.28
3376 5660 8.947055 ATTATTTTTATGCTTGATTCACCCAC 57.053 30.769 0.00 0.00 0.00 4.61
3377 5661 6.610075 ATTTTTATGCTTGATTCACCCACT 57.390 33.333 0.00 0.00 0.00 4.00
3378 5662 6.418057 TTTTTATGCTTGATTCACCCACTT 57.582 33.333 0.00 0.00 0.00 3.16
3379 5663 7.531857 TTTTTATGCTTGATTCACCCACTTA 57.468 32.000 0.00 0.00 0.00 2.24
3380 5664 6.757897 TTTATGCTTGATTCACCCACTTAG 57.242 37.500 0.00 0.00 0.00 2.18
3381 5665 4.574674 ATGCTTGATTCACCCACTTAGA 57.425 40.909 0.00 0.00 0.00 2.10
3382 5666 4.574674 TGCTTGATTCACCCACTTAGAT 57.425 40.909 0.00 0.00 0.00 1.98
3383 5667 4.264253 TGCTTGATTCACCCACTTAGATG 58.736 43.478 0.00 0.00 0.00 2.90
3384 5668 4.263462 TGCTTGATTCACCCACTTAGATGT 60.263 41.667 0.00 0.00 0.00 3.06
3385 5669 4.095483 GCTTGATTCACCCACTTAGATGTG 59.905 45.833 0.00 0.00 37.66 3.21
3386 5670 3.609853 TGATTCACCCACTTAGATGTGC 58.390 45.455 0.00 0.00 36.68 4.57
3387 5671 3.008923 TGATTCACCCACTTAGATGTGCA 59.991 43.478 0.00 0.00 36.68 4.57
3388 5672 3.500448 TTCACCCACTTAGATGTGCAA 57.500 42.857 0.00 0.00 36.68 4.08
3389 5673 3.719268 TCACCCACTTAGATGTGCAAT 57.281 42.857 0.00 0.00 36.68 3.56
3390 5674 4.835284 TCACCCACTTAGATGTGCAATA 57.165 40.909 0.00 0.00 36.68 1.90
3391 5675 5.172687 TCACCCACTTAGATGTGCAATAA 57.827 39.130 0.00 0.00 36.68 1.40
3392 5676 4.941263 TCACCCACTTAGATGTGCAATAAC 59.059 41.667 0.00 0.00 36.68 1.89
3393 5677 4.943705 CACCCACTTAGATGTGCAATAACT 59.056 41.667 0.00 0.00 36.68 2.24
3394 5678 6.070481 TCACCCACTTAGATGTGCAATAACTA 60.070 38.462 0.00 0.00 36.68 2.24
3395 5679 6.597672 CACCCACTTAGATGTGCAATAACTAA 59.402 38.462 0.00 0.00 36.68 2.24
3396 5680 6.823689 ACCCACTTAGATGTGCAATAACTAAG 59.176 38.462 19.21 19.21 42.89 2.18
3397 5681 6.260936 CCCACTTAGATGTGCAATAACTAAGG 59.739 42.308 22.21 15.22 42.10 2.69
3398 5682 6.238484 CCACTTAGATGTGCAATAACTAAGGC 60.238 42.308 22.21 0.00 42.10 4.35
3399 5683 6.316140 CACTTAGATGTGCAATAACTAAGGCA 59.684 38.462 22.21 2.55 42.10 4.75
3407 5691 6.233905 TGCAATAACTAAGGCACATCTAGA 57.766 37.500 0.00 0.00 0.00 2.43
3408 5692 6.830912 TGCAATAACTAAGGCACATCTAGAT 58.169 36.000 0.00 0.00 0.00 1.98
3409 5693 7.962441 TGCAATAACTAAGGCACATCTAGATA 58.038 34.615 4.54 0.00 0.00 1.98
3410 5694 8.597167 TGCAATAACTAAGGCACATCTAGATAT 58.403 33.333 4.54 0.00 0.00 1.63
3411 5695 8.877779 GCAATAACTAAGGCACATCTAGATATG 58.122 37.037 6.64 6.64 0.00 1.78
3412 5696 8.877779 CAATAACTAAGGCACATCTAGATATGC 58.122 37.037 24.83 24.83 40.32 3.14
3413 5697 5.065704 ACTAAGGCACATCTAGATATGCG 57.934 43.478 25.53 16.03 41.86 4.73
3414 5698 2.376808 AGGCACATCTAGATATGCGC 57.623 50.000 25.53 19.08 41.86 6.09
3415 5699 1.898472 AGGCACATCTAGATATGCGCT 59.102 47.619 25.53 20.67 41.86 5.92
3416 5700 3.092301 AGGCACATCTAGATATGCGCTA 58.908 45.455 25.53 0.00 41.86 4.26
3417 5701 3.130164 AGGCACATCTAGATATGCGCTAG 59.870 47.826 25.53 5.53 41.86 3.42
3418 5702 3.129462 GGCACATCTAGATATGCGCTAGA 59.871 47.826 25.53 7.43 41.86 2.43
3419 5703 4.101942 GCACATCTAGATATGCGCTAGAC 58.898 47.826 19.57 0.00 44.98 2.59
3420 5704 4.379918 GCACATCTAGATATGCGCTAGACA 60.380 45.833 19.57 0.00 44.98 3.41
3421 5705 5.092105 CACATCTAGATATGCGCTAGACAC 58.908 45.833 9.73 0.00 44.98 3.67
3422 5706 4.762251 ACATCTAGATATGCGCTAGACACA 59.238 41.667 9.73 0.00 44.98 3.72
3423 5707 4.750952 TCTAGATATGCGCTAGACACAC 57.249 45.455 9.73 0.00 39.40 3.82
3424 5708 2.802787 AGATATGCGCTAGACACACC 57.197 50.000 9.73 0.00 0.00 4.16
3425 5709 1.001268 AGATATGCGCTAGACACACCG 60.001 52.381 9.73 0.00 0.00 4.94
3426 5710 1.001706 GATATGCGCTAGACACACCGA 60.002 52.381 9.73 0.00 0.00 4.69
3427 5711 0.812549 TATGCGCTAGACACACCGAA 59.187 50.000 9.73 0.00 0.00 4.30
3428 5712 0.037697 ATGCGCTAGACACACCGAAA 60.038 50.000 9.73 0.00 0.00 3.46
3429 5713 0.037697 TGCGCTAGACACACCGAAAT 60.038 50.000 9.73 0.00 0.00 2.17
3430 5714 1.076332 GCGCTAGACACACCGAAATT 58.924 50.000 0.00 0.00 0.00 1.82
3431 5715 1.463444 GCGCTAGACACACCGAAATTT 59.537 47.619 0.00 0.00 0.00 1.82
3432 5716 2.474032 GCGCTAGACACACCGAAATTTC 60.474 50.000 8.20 8.20 0.00 2.17
3433 5717 2.993899 CGCTAGACACACCGAAATTTCT 59.006 45.455 15.92 0.00 0.00 2.52
3434 5718 4.171005 CGCTAGACACACCGAAATTTCTA 58.829 43.478 15.92 0.00 0.00 2.10
3435 5719 4.031426 CGCTAGACACACCGAAATTTCTAC 59.969 45.833 15.92 0.00 0.00 2.59
3436 5720 4.329256 GCTAGACACACCGAAATTTCTACC 59.671 45.833 15.92 0.00 0.00 3.18
3437 5721 4.345859 AGACACACCGAAATTTCTACCA 57.654 40.909 15.92 0.00 0.00 3.25
3438 5722 4.062991 AGACACACCGAAATTTCTACCAC 58.937 43.478 15.92 2.51 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.321122 GTACAGGTGCAGAGCAAGCT 60.321 55.000 0.00 0.00 41.47 3.74
1 2 0.321122 AGTACAGGTGCAGAGCAAGC 60.321 55.000 0.00 0.00 41.47 4.01
2 3 1.802960 CAAGTACAGGTGCAGAGCAAG 59.197 52.381 0.00 0.00 41.47 4.01
3 4 1.140852 ACAAGTACAGGTGCAGAGCAA 59.859 47.619 0.00 0.00 41.47 3.91
4 5 0.758734 ACAAGTACAGGTGCAGAGCA 59.241 50.000 0.00 0.00 35.60 4.26
5 6 1.884235 AACAAGTACAGGTGCAGAGC 58.116 50.000 0.00 0.00 0.00 4.09
6 7 4.601019 CAAAAACAAGTACAGGTGCAGAG 58.399 43.478 0.00 0.00 0.00 3.35
7 8 3.181491 GCAAAAACAAGTACAGGTGCAGA 60.181 43.478 0.00 0.00 0.00 4.26
8 9 3.115554 GCAAAAACAAGTACAGGTGCAG 58.884 45.455 0.00 0.00 0.00 4.41
9 10 2.478709 CGCAAAAACAAGTACAGGTGCA 60.479 45.455 0.00 0.00 0.00 4.57
10 11 2.116366 CGCAAAAACAAGTACAGGTGC 58.884 47.619 0.00 0.00 0.00 5.01
11 12 3.548014 CCTCGCAAAAACAAGTACAGGTG 60.548 47.826 0.00 0.00 0.00 4.00
12 13 2.616842 CCTCGCAAAAACAAGTACAGGT 59.383 45.455 0.00 0.00 0.00 4.00
13 14 2.875933 TCCTCGCAAAAACAAGTACAGG 59.124 45.455 0.00 0.00 0.00 4.00
14 15 3.560068 ACTCCTCGCAAAAACAAGTACAG 59.440 43.478 0.00 0.00 0.00 2.74
15 16 3.537580 ACTCCTCGCAAAAACAAGTACA 58.462 40.909 0.00 0.00 0.00 2.90
16 17 3.558418 TGACTCCTCGCAAAAACAAGTAC 59.442 43.478 0.00 0.00 0.00 2.73
17 18 3.799366 TGACTCCTCGCAAAAACAAGTA 58.201 40.909 0.00 0.00 0.00 2.24
18 19 2.639065 TGACTCCTCGCAAAAACAAGT 58.361 42.857 0.00 0.00 0.00 3.16
19 20 3.691049 TTGACTCCTCGCAAAAACAAG 57.309 42.857 0.00 0.00 0.00 3.16
20 21 5.957842 ATATTGACTCCTCGCAAAAACAA 57.042 34.783 0.00 0.00 0.00 2.83
21 22 5.957842 AATATTGACTCCTCGCAAAAACA 57.042 34.783 0.00 0.00 0.00 2.83
22 23 5.800438 GGAAATATTGACTCCTCGCAAAAAC 59.200 40.000 0.00 0.00 0.00 2.43
23 24 5.710099 AGGAAATATTGACTCCTCGCAAAAA 59.290 36.000 1.87 0.00 34.31 1.94
24 25 5.253330 AGGAAATATTGACTCCTCGCAAAA 58.747 37.500 1.87 0.00 34.31 2.44
25 26 4.843728 AGGAAATATTGACTCCTCGCAAA 58.156 39.130 1.87 0.00 34.31 3.68
26 27 4.442706 GAGGAAATATTGACTCCTCGCAA 58.557 43.478 15.65 0.00 44.33 4.85
27 28 4.060038 GAGGAAATATTGACTCCTCGCA 57.940 45.455 15.65 0.00 44.33 5.10
31 32 5.045869 TGAAACGGAGGAAATATTGACTCCT 60.046 40.000 24.86 17.63 45.71 3.69
32 33 5.183228 TGAAACGGAGGAAATATTGACTCC 58.817 41.667 20.86 20.86 44.71 3.85
33 34 6.106673 TCTGAAACGGAGGAAATATTGACTC 58.893 40.000 9.91 9.91 0.00 3.36
34 35 6.049955 TCTGAAACGGAGGAAATATTGACT 57.950 37.500 0.00 0.00 0.00 3.41
35 36 6.017852 GGATCTGAAACGGAGGAAATATTGAC 60.018 42.308 0.00 0.00 0.00 3.18
36 37 6.055588 GGATCTGAAACGGAGGAAATATTGA 58.944 40.000 0.00 0.00 0.00 2.57
37 38 5.050091 CGGATCTGAAACGGAGGAAATATTG 60.050 44.000 0.00 0.00 0.00 1.90
38 39 5.057149 CGGATCTGAAACGGAGGAAATATT 58.943 41.667 0.00 0.00 0.00 1.28
39 40 4.632153 CGGATCTGAAACGGAGGAAATAT 58.368 43.478 0.00 0.00 0.00 1.28
40 41 4.054780 CGGATCTGAAACGGAGGAAATA 57.945 45.455 0.00 0.00 0.00 1.40
41 42 2.906354 CGGATCTGAAACGGAGGAAAT 58.094 47.619 0.00 0.00 0.00 2.17
42 43 2.380084 CGGATCTGAAACGGAGGAAA 57.620 50.000 0.00 0.00 0.00 3.13
49 50 1.790755 TTCACACCGGATCTGAAACG 58.209 50.000 9.46 0.00 0.00 3.60
50 51 3.537793 GTTTCACACCGGATCTGAAAC 57.462 47.619 25.92 25.92 43.79 2.78
51 52 3.485463 AGTTTCACACCGGATCTGAAA 57.515 42.857 9.46 14.54 32.69 2.69
52 53 3.181459 TGAAGTTTCACACCGGATCTGAA 60.181 43.478 9.46 8.83 31.01 3.02
53 54 2.367241 TGAAGTTTCACACCGGATCTGA 59.633 45.455 9.46 1.87 31.01 3.27
54 55 2.766313 TGAAGTTTCACACCGGATCTG 58.234 47.619 9.46 0.00 31.01 2.90
65 66 5.277297 CGCTACAAATCTGTGTGAAGTTTCA 60.277 40.000 0.00 0.00 36.96 2.69
66 67 5.140177 CGCTACAAATCTGTGTGAAGTTTC 58.860 41.667 0.00 0.00 36.96 2.78
67 68 4.554723 GCGCTACAAATCTGTGTGAAGTTT 60.555 41.667 0.00 0.00 36.96 2.66
68 69 3.058914 GCGCTACAAATCTGTGTGAAGTT 60.059 43.478 0.00 0.00 36.96 2.66
69 70 2.480419 GCGCTACAAATCTGTGTGAAGT 59.520 45.455 0.00 0.00 36.96 3.01
70 71 2.472886 CGCGCTACAAATCTGTGTGAAG 60.473 50.000 5.56 0.00 36.96 3.02
71 72 1.459209 CGCGCTACAAATCTGTGTGAA 59.541 47.619 5.56 0.00 36.96 3.18
72 73 1.067693 CGCGCTACAAATCTGTGTGA 58.932 50.000 5.56 0.00 36.96 3.58
73 74 0.095245 CCGCGCTACAAATCTGTGTG 59.905 55.000 5.56 0.00 36.96 3.82
74 75 1.019278 CCCGCGCTACAAATCTGTGT 61.019 55.000 5.56 0.00 36.96 3.72
75 76 1.019278 ACCCGCGCTACAAATCTGTG 61.019 55.000 5.56 0.00 36.96 3.66
76 77 0.321298 AACCCGCGCTACAAATCTGT 60.321 50.000 5.56 0.00 39.75 3.41
77 78 1.647346 TAACCCGCGCTACAAATCTG 58.353 50.000 5.56 0.00 0.00 2.90
78 79 2.389962 TTAACCCGCGCTACAAATCT 57.610 45.000 5.56 0.00 0.00 2.40
79 80 3.685836 AATTAACCCGCGCTACAAATC 57.314 42.857 5.56 0.00 0.00 2.17
80 81 4.271776 GTCTAATTAACCCGCGCTACAAAT 59.728 41.667 5.56 0.00 0.00 2.32
81 82 3.618150 GTCTAATTAACCCGCGCTACAAA 59.382 43.478 5.56 0.00 0.00 2.83
82 83 3.189285 GTCTAATTAACCCGCGCTACAA 58.811 45.455 5.56 0.00 0.00 2.41
83 84 2.166050 TGTCTAATTAACCCGCGCTACA 59.834 45.455 5.56 0.00 0.00 2.74
84 85 2.813061 TGTCTAATTAACCCGCGCTAC 58.187 47.619 5.56 0.00 0.00 3.58
85 86 3.119029 ACTTGTCTAATTAACCCGCGCTA 60.119 43.478 5.56 0.00 0.00 4.26
86 87 2.277084 CTTGTCTAATTAACCCGCGCT 58.723 47.619 5.56 0.00 0.00 5.92
87 88 2.004733 ACTTGTCTAATTAACCCGCGC 58.995 47.619 0.00 0.00 0.00 6.86
88 89 2.350498 CCACTTGTCTAATTAACCCGCG 59.650 50.000 0.00 0.00 0.00 6.46
89 90 2.681344 CCCACTTGTCTAATTAACCCGC 59.319 50.000 0.00 0.00 0.00 6.13
90 91 2.681344 GCCCACTTGTCTAATTAACCCG 59.319 50.000 0.00 0.00 0.00 5.28
91 92 3.692690 TGCCCACTTGTCTAATTAACCC 58.307 45.455 0.00 0.00 0.00 4.11
92 93 3.694566 CCTGCCCACTTGTCTAATTAACC 59.305 47.826 0.00 0.00 0.00 2.85
93 94 3.694566 CCCTGCCCACTTGTCTAATTAAC 59.305 47.826 0.00 0.00 0.00 2.01
94 95 3.332485 ACCCTGCCCACTTGTCTAATTAA 59.668 43.478 0.00 0.00 0.00 1.40
95 96 2.916934 ACCCTGCCCACTTGTCTAATTA 59.083 45.455 0.00 0.00 0.00 1.40
96 97 1.710809 ACCCTGCCCACTTGTCTAATT 59.289 47.619 0.00 0.00 0.00 1.40
97 98 1.004745 CACCCTGCCCACTTGTCTAAT 59.995 52.381 0.00 0.00 0.00 1.73
98 99 0.400213 CACCCTGCCCACTTGTCTAA 59.600 55.000 0.00 0.00 0.00 2.10
99 100 0.766674 ACACCCTGCCCACTTGTCTA 60.767 55.000 0.00 0.00 0.00 2.59
100 101 1.645402 AACACCCTGCCCACTTGTCT 61.645 55.000 0.00 0.00 0.00 3.41
101 102 0.755327 AAACACCCTGCCCACTTGTC 60.755 55.000 0.00 0.00 0.00 3.18
102 103 0.325203 AAAACACCCTGCCCACTTGT 60.325 50.000 0.00 0.00 0.00 3.16
103 104 0.829990 AAAAACACCCTGCCCACTTG 59.170 50.000 0.00 0.00 0.00 3.16
104 105 3.315544 AAAAACACCCTGCCCACTT 57.684 47.368 0.00 0.00 0.00 3.16
121 122 3.490078 CCTCGCCTGCACTTTTACAAAAA 60.490 43.478 0.00 0.00 0.00 1.94
122 123 2.034053 CCTCGCCTGCACTTTTACAAAA 59.966 45.455 0.00 0.00 0.00 2.44
123 124 1.606668 CCTCGCCTGCACTTTTACAAA 59.393 47.619 0.00 0.00 0.00 2.83
124 125 1.202710 TCCTCGCCTGCACTTTTACAA 60.203 47.619 0.00 0.00 0.00 2.41
125 126 0.394938 TCCTCGCCTGCACTTTTACA 59.605 50.000 0.00 0.00 0.00 2.41
126 127 0.796927 GTCCTCGCCTGCACTTTTAC 59.203 55.000 0.00 0.00 0.00 2.01
127 128 0.669318 CGTCCTCGCCTGCACTTTTA 60.669 55.000 0.00 0.00 0.00 1.52
128 129 1.961277 CGTCCTCGCCTGCACTTTT 60.961 57.895 0.00 0.00 0.00 2.27
129 130 2.357517 CGTCCTCGCCTGCACTTT 60.358 61.111 0.00 0.00 0.00 2.66
130 131 4.379243 CCGTCCTCGCCTGCACTT 62.379 66.667 0.00 0.00 35.54 3.16
134 135 4.803426 CAGACCGTCCTCGCCTGC 62.803 72.222 0.00 0.00 32.87 4.85
135 136 4.135153 CCAGACCGTCCTCGCCTG 62.135 72.222 0.00 0.00 36.64 4.85
139 140 4.436998 GTGGCCAGACCGTCCTCG 62.437 72.222 5.11 0.00 43.94 4.63
140 141 4.436998 CGTGGCCAGACCGTCCTC 62.437 72.222 5.11 0.00 43.94 3.71
153 154 2.259204 CAATTGGCAGCCACGTGG 59.741 61.111 30.66 30.66 30.78 4.94
154 155 1.081242 GACAATTGGCAGCCACGTG 60.081 57.895 15.89 17.51 30.78 4.49
155 156 2.616330 CGACAATTGGCAGCCACGT 61.616 57.895 15.89 12.13 30.78 4.49
156 157 2.176546 CGACAATTGGCAGCCACG 59.823 61.111 15.89 10.66 30.78 4.94
157 158 2.126346 GCGACAATTGGCAGCCAC 60.126 61.111 15.89 0.31 30.78 5.01
158 159 3.736100 CGCGACAATTGGCAGCCA 61.736 61.111 11.22 11.22 0.00 4.75
160 161 4.107051 AGCGCGACAATTGGCAGC 62.107 61.111 18.06 18.06 0.00 5.25
161 162 2.202388 CAGCGCGACAATTGGCAG 60.202 61.111 12.10 5.72 0.00 4.85
162 163 2.977456 ACAGCGCGACAATTGGCA 60.977 55.556 12.10 0.00 0.00 4.92
163 164 2.257286 ATCACAGCGCGACAATTGGC 62.257 55.000 12.10 5.64 0.00 4.52
164 165 1.004610 CTATCACAGCGCGACAATTGG 60.005 52.381 12.10 0.00 0.00 3.16
165 166 1.004610 CCTATCACAGCGCGACAATTG 60.005 52.381 12.10 3.24 0.00 2.32
166 167 1.290203 CCTATCACAGCGCGACAATT 58.710 50.000 12.10 0.00 0.00 2.32
167 168 1.154205 GCCTATCACAGCGCGACAAT 61.154 55.000 12.10 0.00 0.00 2.71
168 169 1.809619 GCCTATCACAGCGCGACAA 60.810 57.895 12.10 0.00 0.00 3.18
169 170 2.202743 GCCTATCACAGCGCGACA 60.203 61.111 12.10 0.00 0.00 4.35
170 171 2.962253 GGCCTATCACAGCGCGAC 60.962 66.667 12.10 0.04 0.00 5.19
171 172 4.221422 GGGCCTATCACAGCGCGA 62.221 66.667 12.10 0.00 31.97 5.87
174 175 4.609018 CCCGGGCCTATCACAGCG 62.609 72.222 8.08 0.00 0.00 5.18
175 176 3.161450 TCCCGGGCCTATCACAGC 61.161 66.667 18.49 0.00 0.00 4.40
176 177 2.808206 GGTCCCGGGCCTATCACAG 61.808 68.421 18.49 0.00 0.00 3.66
177 178 2.766651 GGTCCCGGGCCTATCACA 60.767 66.667 18.49 0.00 0.00 3.58
178 179 1.917336 TTTGGTCCCGGGCCTATCAC 61.917 60.000 27.49 15.72 0.00 3.06
179 180 0.991355 ATTTGGTCCCGGGCCTATCA 60.991 55.000 27.49 12.01 0.00 2.15
180 181 0.250770 GATTTGGTCCCGGGCCTATC 60.251 60.000 27.49 24.08 0.00 2.08
181 182 1.844130 GATTTGGTCCCGGGCCTAT 59.156 57.895 27.49 21.44 0.00 2.57
182 183 2.737881 CGATTTGGTCCCGGGCCTA 61.738 63.158 27.49 20.47 0.00 3.93
183 184 4.109675 CGATTTGGTCCCGGGCCT 62.110 66.667 27.49 13.06 0.00 5.19
184 185 4.419921 ACGATTTGGTCCCGGGCC 62.420 66.667 18.49 21.20 0.00 5.80
185 186 2.822701 GACGATTTGGTCCCGGGC 60.823 66.667 18.49 11.44 0.00 6.13
186 187 1.743995 GTGACGATTTGGTCCCGGG 60.744 63.158 16.85 16.85 36.07 5.73
187 188 0.392461 ATGTGACGATTTGGTCCCGG 60.392 55.000 0.00 0.00 36.07 5.73
188 189 1.931172 GTATGTGACGATTTGGTCCCG 59.069 52.381 0.00 0.00 36.07 5.14
189 190 2.936498 CTGTATGTGACGATTTGGTCCC 59.064 50.000 0.00 0.00 36.07 4.46
190 191 3.596214 ACTGTATGTGACGATTTGGTCC 58.404 45.455 0.00 0.00 36.07 4.46
203 204 1.144913 ACCCCAACTTGCACTGTATGT 59.855 47.619 0.00 0.00 0.00 2.29
204 205 1.909700 ACCCCAACTTGCACTGTATG 58.090 50.000 0.00 0.00 0.00 2.39
205 206 3.620488 CATACCCCAACTTGCACTGTAT 58.380 45.455 0.00 0.00 0.00 2.29
206 207 2.290641 CCATACCCCAACTTGCACTGTA 60.291 50.000 0.00 0.00 0.00 2.74
207 208 1.547675 CCATACCCCAACTTGCACTGT 60.548 52.381 0.00 0.00 0.00 3.55
208 209 1.176527 CCATACCCCAACTTGCACTG 58.823 55.000 0.00 0.00 0.00 3.66
209 210 0.777446 ACCATACCCCAACTTGCACT 59.223 50.000 0.00 0.00 0.00 4.40
210 211 0.887933 CACCATACCCCAACTTGCAC 59.112 55.000 0.00 0.00 0.00 4.57
211 212 0.251564 CCACCATACCCCAACTTGCA 60.252 55.000 0.00 0.00 0.00 4.08
212 213 0.039035 TCCACCATACCCCAACTTGC 59.961 55.000 0.00 0.00 0.00 4.01
213 214 1.354368 ACTCCACCATACCCCAACTTG 59.646 52.381 0.00 0.00 0.00 3.16
214 215 1.755200 ACTCCACCATACCCCAACTT 58.245 50.000 0.00 0.00 0.00 2.66
215 216 1.354368 CAACTCCACCATACCCCAACT 59.646 52.381 0.00 0.00 0.00 3.16
216 217 1.834188 CAACTCCACCATACCCCAAC 58.166 55.000 0.00 0.00 0.00 3.77
217 218 0.039035 GCAACTCCACCATACCCCAA 59.961 55.000 0.00 0.00 0.00 4.12
218 219 1.136961 TGCAACTCCACCATACCCCA 61.137 55.000 0.00 0.00 0.00 4.96
219 220 0.258774 ATGCAACTCCACCATACCCC 59.741 55.000 0.00 0.00 0.00 4.95
220 221 2.143876 AATGCAACTCCACCATACCC 57.856 50.000 0.00 0.00 0.00 3.69
221 222 4.461081 TGTAAAATGCAACTCCACCATACC 59.539 41.667 0.00 0.00 0.00 2.73
222 223 5.637006 TGTAAAATGCAACTCCACCATAC 57.363 39.130 0.00 0.00 0.00 2.39
223 224 5.772672 ACTTGTAAAATGCAACTCCACCATA 59.227 36.000 0.00 0.00 0.00 2.74
224 225 4.588528 ACTTGTAAAATGCAACTCCACCAT 59.411 37.500 0.00 0.00 0.00 3.55
225 226 3.957497 ACTTGTAAAATGCAACTCCACCA 59.043 39.130 0.00 0.00 0.00 4.17
226 227 4.584327 ACTTGTAAAATGCAACTCCACC 57.416 40.909 0.00 0.00 0.00 4.61
227 228 6.039616 TCAAACTTGTAAAATGCAACTCCAC 58.960 36.000 0.00 0.00 0.00 4.02
228 229 6.214191 TCAAACTTGTAAAATGCAACTCCA 57.786 33.333 0.00 0.00 0.00 3.86
229 230 8.082242 AGTATCAAACTTGTAAAATGCAACTCC 58.918 33.333 0.00 0.00 33.35 3.85
263 264 8.990142 AGGTACCCTAACTTGCATGGAATGTG 62.990 46.154 8.74 0.00 38.39 3.21
264 265 7.055864 AGGTACCCTAACTTGCATGGAATGT 62.056 44.000 8.74 0.00 38.39 2.71
265 266 4.628715 AGGTACCCTAACTTGCATGGAATG 60.629 45.833 8.74 0.00 38.95 2.67
266 267 3.527665 AGGTACCCTAACTTGCATGGAAT 59.472 43.478 8.74 0.00 28.47 3.01
267 268 2.916934 AGGTACCCTAACTTGCATGGAA 59.083 45.455 8.74 0.00 28.47 3.53
268 269 2.238646 CAGGTACCCTAACTTGCATGGA 59.761 50.000 8.74 0.00 29.64 3.41
269 270 2.643551 CAGGTACCCTAACTTGCATGG 58.356 52.381 8.74 0.00 29.64 3.66
270 271 2.643551 CCAGGTACCCTAACTTGCATG 58.356 52.381 8.74 0.00 29.64 4.06
271 272 1.564348 CCCAGGTACCCTAACTTGCAT 59.436 52.381 8.74 0.00 29.64 3.96
272 273 0.988832 CCCAGGTACCCTAACTTGCA 59.011 55.000 8.74 0.00 29.64 4.08
273 274 0.255033 CCCCAGGTACCCTAACTTGC 59.745 60.000 8.74 0.00 29.64 4.01
274 275 1.280998 CACCCCAGGTACCCTAACTTG 59.719 57.143 8.74 0.00 32.11 3.16
275 276 1.665137 CACCCCAGGTACCCTAACTT 58.335 55.000 8.74 0.00 32.11 2.66
276 277 0.912968 GCACCCCAGGTACCCTAACT 60.913 60.000 8.74 0.00 32.11 2.24
277 278 0.912968 AGCACCCCAGGTACCCTAAC 60.913 60.000 8.74 0.00 32.11 2.34
278 279 0.178855 AAGCACCCCAGGTACCCTAA 60.179 55.000 8.74 0.00 32.11 2.69
279 280 0.178855 AAAGCACCCCAGGTACCCTA 60.179 55.000 8.74 0.00 32.11 3.53
280 281 1.071909 AAAAGCACCCCAGGTACCCT 61.072 55.000 8.74 0.00 32.11 4.34
281 282 0.699981 TAAAAGCACCCCAGGTACCC 59.300 55.000 8.74 0.00 32.11 3.69
282 283 1.615116 GGTAAAAGCACCCCAGGTACC 60.615 57.143 2.73 2.73 32.11 3.34
283 284 1.353358 AGGTAAAAGCACCCCAGGTAC 59.647 52.381 0.00 0.00 39.62 3.34
284 285 1.631898 GAGGTAAAAGCACCCCAGGTA 59.368 52.381 0.00 0.00 39.62 3.08
285 286 0.404426 GAGGTAAAAGCACCCCAGGT 59.596 55.000 0.00 0.00 39.62 4.00
286 287 0.404040 TGAGGTAAAAGCACCCCAGG 59.596 55.000 0.00 0.00 39.62 4.45
287 288 2.514458 ATGAGGTAAAAGCACCCCAG 57.486 50.000 0.00 0.00 39.62 4.45
288 289 2.990740 AATGAGGTAAAAGCACCCCA 57.009 45.000 0.00 0.00 39.62 4.96
289 290 5.932619 AAATAATGAGGTAAAAGCACCCC 57.067 39.130 0.00 0.00 39.62 4.95
290 291 9.713713 TTTTAAAATAATGAGGTAAAAGCACCC 57.286 29.630 0.00 0.00 39.62 4.61
315 316 6.243216 TCCTTGTAACCTCTACAAACAGTT 57.757 37.500 0.00 0.00 37.04 3.16
363 364 9.522804 TTCAAGTTTTGCGAAAATTTACACTAT 57.477 25.926 9.35 0.00 31.30 2.12
377 378 2.033832 GTGCCACAATTCAAGTTTTGCG 60.034 45.455 0.00 0.00 0.00 4.85
402 403 4.549458 GCAGATCTAGAATCTCAGCACTC 58.451 47.826 0.00 0.00 0.00 3.51
510 511 0.609151 TGAGTCCGGCCATTCGTTTA 59.391 50.000 2.24 0.00 0.00 2.01
523 524 4.610680 CGACCGAAAACTGATTTTGAGTCC 60.611 45.833 0.00 0.00 38.17 3.85
554 555 7.400339 ACATGTCAAAGAAAGGGATAGACTAGA 59.600 37.037 0.00 0.00 0.00 2.43
574 575 5.107453 CGTTTAACTCCTTGACTGACATGTC 60.107 44.000 19.27 19.27 37.47 3.06
575 576 4.750098 CGTTTAACTCCTTGACTGACATGT 59.250 41.667 0.00 0.00 0.00 3.21
665 667 3.754850 TGATTGACATGCAGAAGAAGTGG 59.245 43.478 0.00 0.00 0.00 4.00
668 670 5.411977 ACTCTTGATTGACATGCAGAAGAAG 59.588 40.000 0.00 0.00 0.00 2.85
674 676 5.152097 GTTTGACTCTTGATTGACATGCAG 58.848 41.667 0.00 0.00 0.00 4.41
691 693 1.461127 GAGTCCATGCTCACGTTTGAC 59.539 52.381 0.00 0.00 35.67 3.18
693 695 1.511850 TGAGTCCATGCTCACGTTTG 58.488 50.000 0.00 0.00 40.23 2.93
730 740 1.682740 GGAGAAACGTTTCCAACCCA 58.317 50.000 31.87 0.00 37.92 4.51
731 741 0.589708 CGGAGAAACGTTTCCAACCC 59.410 55.000 31.87 25.22 37.92 4.11
732 742 0.589708 CCGGAGAAACGTTTCCAACC 59.410 55.000 31.87 28.34 37.92 3.77
864 883 0.999712 GATGGGAAACAGGAAGGGGA 59.000 55.000 0.00 0.00 0.00 4.81
939 995 0.764890 TCTTAGCTTGCACACAGGGT 59.235 50.000 0.00 0.00 37.39 4.34
940 996 2.119801 ATCTTAGCTTGCACACAGGG 57.880 50.000 0.00 0.00 0.00 4.45
941 997 3.076621 TGAATCTTAGCTTGCACACAGG 58.923 45.455 0.00 0.00 0.00 4.00
942 998 4.959596 ATGAATCTTAGCTTGCACACAG 57.040 40.909 0.00 0.00 0.00 3.66
983 1039 1.148310 CATCGATCACCAATACCCGC 58.852 55.000 0.00 0.00 0.00 6.13
986 1042 1.148310 CGCCATCGATCACCAATACC 58.852 55.000 0.00 0.00 38.10 2.73
1037 2718 1.625818 TGGAGAAGAAGCAGGAGAACC 59.374 52.381 0.00 0.00 0.00 3.62
1367 3073 2.523168 TGCCACGAGGACTCCACA 60.523 61.111 1.86 0.00 36.89 4.17
1529 3235 1.813859 CGCCTCTTCCGTCACCATA 59.186 57.895 0.00 0.00 0.00 2.74
1765 3471 5.352846 TGCAACTGTGTTTATGTGCGTATAT 59.647 36.000 0.00 0.00 0.00 0.86
1766 3472 4.691216 TGCAACTGTGTTTATGTGCGTATA 59.309 37.500 0.00 0.00 0.00 1.47
1767 3473 3.500299 TGCAACTGTGTTTATGTGCGTAT 59.500 39.130 0.00 0.00 0.00 3.06
1768 3474 2.872858 TGCAACTGTGTTTATGTGCGTA 59.127 40.909 0.00 0.00 0.00 4.42
1769 3475 1.673400 TGCAACTGTGTTTATGTGCGT 59.327 42.857 0.00 0.00 0.00 5.24
1792 3502 3.349927 TGGTAGTGCACTGAGTACGTAT 58.650 45.455 29.57 0.97 37.96 3.06
1857 3569 0.244721 GGCACCAGCATTTCCTTCAC 59.755 55.000 0.00 0.00 44.61 3.18
2161 3873 2.437359 GCTCGAACAGGCTGCCAT 60.437 61.111 22.65 5.42 0.00 4.40
2163 3875 4.742201 TCGCTCGAACAGGCTGCC 62.742 66.667 15.89 11.65 0.00 4.85
2327 4048 2.421739 CTCCGTATCTTGGGCGGG 59.578 66.667 0.00 0.00 44.97 6.13
2339 4060 1.760086 CAGCTCCTCCATCCTCCGT 60.760 63.158 0.00 0.00 0.00 4.69
2447 4168 6.921857 GCAAGTCTACGTATAAGGCATAGAAA 59.078 38.462 0.00 0.00 0.00 2.52
2471 4192 2.223180 GGGAATCGAACCAAACATACGC 60.223 50.000 12.78 0.00 0.00 4.42
2508 4237 1.143073 GCGGAGGGGAATCTAACCAAT 59.857 52.381 0.00 0.00 0.00 3.16
2538 4268 4.969359 CCAGAGGGGAATCTAACCTTCTTA 59.031 45.833 0.00 0.00 40.76 2.10
2542 4272 3.508952 TCCAGAGGGGAATCTAACCTT 57.491 47.619 0.00 0.00 44.80 3.50
2552 4282 6.410388 GGAATACATAAATGTTCCAGAGGGGA 60.410 42.308 0.12 0.00 46.61 4.81
2553 4283 5.770162 GGAATACATAAATGTTCCAGAGGGG 59.230 44.000 0.12 0.00 41.97 4.79
2554 4284 6.488006 CAGGAATACATAAATGTTCCAGAGGG 59.512 42.308 13.66 0.00 39.20 4.30
2555 4285 7.056635 ACAGGAATACATAAATGTTCCAGAGG 58.943 38.462 13.66 5.51 39.20 3.69
2556 4286 9.613428 TTACAGGAATACATAAATGTTCCAGAG 57.387 33.333 13.66 7.52 39.20 3.35
2557 4287 9.967451 TTTACAGGAATACATAAATGTTCCAGA 57.033 29.630 13.66 0.04 39.20 3.86
2559 4289 8.670135 CGTTTACAGGAATACATAAATGTTCCA 58.330 33.333 13.66 0.00 39.20 3.53
2560 4290 8.671028 ACGTTTACAGGAATACATAAATGTTCC 58.329 33.333 0.12 3.55 41.97 3.62
2562 4292 9.834628 CAACGTTTACAGGAATACATAAATGTT 57.165 29.630 0.00 7.15 42.92 2.71
2563 4293 9.221933 TCAACGTTTACAGGAATACATAAATGT 57.778 29.630 0.00 0.63 44.48 2.71
2566 4296 9.661563 AGATCAACGTTTACAGGAATACATAAA 57.338 29.630 0.00 0.00 0.00 1.40
2676 4501 5.764432 AGAAACCCGGTAATAGAGTAGTCT 58.236 41.667 5.21 5.21 36.75 3.24
2704 4529 6.864165 GCAACAATAAACCGGAAATAGTTTGA 59.136 34.615 9.46 0.00 36.85 2.69
2705 4530 6.866248 AGCAACAATAAACCGGAAATAGTTTG 59.134 34.615 9.46 5.05 36.85 2.93
2706 4531 6.988522 AGCAACAATAAACCGGAAATAGTTT 58.011 32.000 9.46 0.00 39.44 2.66
2707 4532 6.349860 GGAGCAACAATAAACCGGAAATAGTT 60.350 38.462 9.46 2.55 0.00 2.24
2708 4533 5.124936 GGAGCAACAATAAACCGGAAATAGT 59.875 40.000 9.46 0.00 0.00 2.12
2709 4534 5.124776 TGGAGCAACAATAAACCGGAAATAG 59.875 40.000 9.46 0.00 0.00 1.73
2710 4535 5.010933 TGGAGCAACAATAAACCGGAAATA 58.989 37.500 9.46 0.00 0.00 1.40
2711 4536 3.829601 TGGAGCAACAATAAACCGGAAAT 59.170 39.130 9.46 0.00 0.00 2.17
2712 4537 3.223435 TGGAGCAACAATAAACCGGAAA 58.777 40.909 9.46 0.00 0.00 3.13
2713 4538 2.817258 CTGGAGCAACAATAAACCGGAA 59.183 45.455 9.46 0.00 0.00 4.30
2714 4539 2.224670 ACTGGAGCAACAATAAACCGGA 60.225 45.455 9.46 0.00 0.00 5.14
2716 4541 3.074412 AGACTGGAGCAACAATAAACCG 58.926 45.455 0.00 0.00 0.00 4.44
2717 4542 5.222631 CAAAGACTGGAGCAACAATAAACC 58.777 41.667 0.00 0.00 0.00 3.27
2733 4563 5.529060 CAGTCTTGGTTAGAAAGCAAAGACT 59.471 40.000 19.33 19.33 46.85 3.24
2734 4564 5.527582 TCAGTCTTGGTTAGAAAGCAAAGAC 59.472 40.000 17.04 17.04 46.85 3.01
2735 4565 5.680619 TCAGTCTTGGTTAGAAAGCAAAGA 58.319 37.500 5.85 3.69 46.85 2.52
2736 4566 6.038714 ACTTCAGTCTTGGTTAGAAAGCAAAG 59.961 38.462 5.85 2.59 46.85 2.77
2760 4590 7.340999 TCAGGCTTACCCAGGAAAAATTATAAC 59.659 37.037 0.00 0.00 36.11 1.89
2767 4597 3.117284 ACTTCAGGCTTACCCAGGAAAAA 60.117 43.478 0.00 0.00 36.11 1.94
2791 4621 4.272504 TCAGACTCATCCACGAAAAACAAC 59.727 41.667 0.00 0.00 0.00 3.32
2794 4624 4.511826 ACTTCAGACTCATCCACGAAAAAC 59.488 41.667 0.00 0.00 0.00 2.43
2800 4630 6.368791 TCAAAATAACTTCAGACTCATCCACG 59.631 38.462 0.00 0.00 0.00 4.94
2805 4638 6.716628 TGGCTTCAAAATAACTTCAGACTCAT 59.283 34.615 0.00 0.00 0.00 2.90
2827 4660 4.439305 TGTGTTTCTTGCTTATCATGGC 57.561 40.909 0.00 0.00 0.00 4.40
2885 4719 5.075493 AGTTCCCTTTAGTCTAGTGTCGAA 58.925 41.667 0.00 0.00 0.00 3.71
2971 4835 5.862678 AGATTGAAAGTTTTTCCCCGAAA 57.137 34.783 0.00 0.00 0.00 3.46
2974 4838 6.919721 TGAATAGATTGAAAGTTTTTCCCCG 58.080 36.000 0.00 0.00 0.00 5.73
3036 4900 8.895737 GGTTTACGGATCTGGATGTAATTTTTA 58.104 33.333 6.47 0.00 0.00 1.52
3037 4901 7.394923 TGGTTTACGGATCTGGATGTAATTTTT 59.605 33.333 6.47 0.00 0.00 1.94
3038 4902 6.887545 TGGTTTACGGATCTGGATGTAATTTT 59.112 34.615 6.47 0.00 0.00 1.82
3039 4903 6.317893 GTGGTTTACGGATCTGGATGTAATTT 59.682 38.462 6.47 0.00 0.00 1.82
3040 4904 5.820947 GTGGTTTACGGATCTGGATGTAATT 59.179 40.000 6.47 0.00 0.00 1.40
3041 4905 5.365619 GTGGTTTACGGATCTGGATGTAAT 58.634 41.667 6.47 0.00 0.00 1.89
3042 4906 4.383335 GGTGGTTTACGGATCTGGATGTAA 60.383 45.833 6.47 0.00 0.00 2.41
3043 4907 3.133362 GGTGGTTTACGGATCTGGATGTA 59.867 47.826 6.47 0.00 0.00 2.29
3044 4908 2.093128 GGTGGTTTACGGATCTGGATGT 60.093 50.000 6.47 0.00 0.00 3.06
3045 4909 2.170607 AGGTGGTTTACGGATCTGGATG 59.829 50.000 6.47 0.00 0.00 3.51
3046 4910 2.478292 AGGTGGTTTACGGATCTGGAT 58.522 47.619 6.47 0.00 0.00 3.41
3047 4911 1.946984 AGGTGGTTTACGGATCTGGA 58.053 50.000 6.47 0.00 0.00 3.86
3048 4912 2.483188 GCTAGGTGGTTTACGGATCTGG 60.483 54.545 6.47 0.00 0.00 3.86
3049 4913 2.431057 AGCTAGGTGGTTTACGGATCTG 59.569 50.000 0.00 0.00 0.00 2.90
3050 4914 2.748388 AGCTAGGTGGTTTACGGATCT 58.252 47.619 0.00 0.00 0.00 2.75
3051 4915 3.549625 CGTAGCTAGGTGGTTTACGGATC 60.550 52.174 4.27 0.00 34.94 3.36
3052 4916 2.360165 CGTAGCTAGGTGGTTTACGGAT 59.640 50.000 4.27 0.00 34.94 4.18
3053 4917 1.745087 CGTAGCTAGGTGGTTTACGGA 59.255 52.381 4.27 0.00 34.94 4.69
3054 4918 1.745087 TCGTAGCTAGGTGGTTTACGG 59.255 52.381 12.88 0.00 38.06 4.02
3055 4919 2.421424 AGTCGTAGCTAGGTGGTTTACG 59.579 50.000 12.88 6.27 38.65 3.18
3056 4920 4.396166 TGTAGTCGTAGCTAGGTGGTTTAC 59.604 45.833 12.88 9.67 0.00 2.01
3057 4921 4.588899 TGTAGTCGTAGCTAGGTGGTTTA 58.411 43.478 12.88 0.00 0.00 2.01
3058 4922 3.424703 TGTAGTCGTAGCTAGGTGGTTT 58.575 45.455 12.88 0.00 0.00 3.27
3059 4923 3.077484 TGTAGTCGTAGCTAGGTGGTT 57.923 47.619 12.88 1.34 0.00 3.67
3060 4924 2.795231 TGTAGTCGTAGCTAGGTGGT 57.205 50.000 12.88 2.52 0.00 4.16
3061 4925 2.223525 GCTTGTAGTCGTAGCTAGGTGG 60.224 54.545 12.88 0.00 32.26 4.61
3062 4926 2.422479 TGCTTGTAGTCGTAGCTAGGTG 59.578 50.000 12.88 0.00 35.93 4.00
3063 4927 2.422832 GTGCTTGTAGTCGTAGCTAGGT 59.577 50.000 12.88 0.00 35.93 3.08
3064 4928 2.422479 TGTGCTTGTAGTCGTAGCTAGG 59.578 50.000 7.12 7.12 35.93 3.02
3065 4929 3.759527 TGTGCTTGTAGTCGTAGCTAG 57.240 47.619 0.00 0.00 35.93 3.42
3066 4930 3.754850 TCTTGTGCTTGTAGTCGTAGCTA 59.245 43.478 0.00 0.00 35.93 3.32
3067 4931 2.557056 TCTTGTGCTTGTAGTCGTAGCT 59.443 45.455 0.00 0.00 35.93 3.32
3068 4932 2.942710 TCTTGTGCTTGTAGTCGTAGC 58.057 47.619 0.00 0.00 35.50 3.58
3069 4933 4.547532 AGTTCTTGTGCTTGTAGTCGTAG 58.452 43.478 0.00 0.00 0.00 3.51
3070 4934 4.543692 GAGTTCTTGTGCTTGTAGTCGTA 58.456 43.478 0.00 0.00 0.00 3.43
3071 4935 3.381949 GAGTTCTTGTGCTTGTAGTCGT 58.618 45.455 0.00 0.00 0.00 4.34
3072 4936 2.731976 GGAGTTCTTGTGCTTGTAGTCG 59.268 50.000 0.00 0.00 0.00 4.18
3073 4937 3.067833 GGGAGTTCTTGTGCTTGTAGTC 58.932 50.000 0.00 0.00 0.00 2.59
3074 4938 2.224548 GGGGAGTTCTTGTGCTTGTAGT 60.225 50.000 0.00 0.00 0.00 2.73
3075 4939 2.224523 TGGGGAGTTCTTGTGCTTGTAG 60.225 50.000 0.00 0.00 0.00 2.74
3076 4940 1.771854 TGGGGAGTTCTTGTGCTTGTA 59.228 47.619 0.00 0.00 0.00 2.41
3077 4941 0.550914 TGGGGAGTTCTTGTGCTTGT 59.449 50.000 0.00 0.00 0.00 3.16
3078 4942 1.242076 CTGGGGAGTTCTTGTGCTTG 58.758 55.000 0.00 0.00 0.00 4.01
3079 4943 0.538287 GCTGGGGAGTTCTTGTGCTT 60.538 55.000 0.00 0.00 0.00 3.91
3080 4944 1.073897 GCTGGGGAGTTCTTGTGCT 59.926 57.895 0.00 0.00 0.00 4.40
3081 4945 2.328099 CGCTGGGGAGTTCTTGTGC 61.328 63.158 0.00 0.00 0.00 4.57
3082 4946 1.672356 CCGCTGGGGAGTTCTTGTG 60.672 63.158 4.46 0.00 38.47 3.33
3083 4947 2.750350 CCGCTGGGGAGTTCTTGT 59.250 61.111 4.46 0.00 38.47 3.16
3084 4948 2.747855 GCCGCTGGGGAGTTCTTG 60.748 66.667 15.77 0.00 38.47 3.02
3097 4961 3.440415 GGCCTACCAACAAGCCGC 61.440 66.667 0.00 0.00 35.30 6.53
3109 4973 4.025360 TCGTATAAACTCCTGTTGGCCTA 58.975 43.478 3.32 0.00 36.39 3.93
3117 4981 4.181578 CCACCTTGTCGTATAAACTCCTG 58.818 47.826 0.00 0.00 0.00 3.86
3127 4991 4.340097 CACACTATATCCCACCTTGTCGTA 59.660 45.833 0.00 0.00 0.00 3.43
3128 4992 3.132289 CACACTATATCCCACCTTGTCGT 59.868 47.826 0.00 0.00 0.00 4.34
3129 4993 3.132289 ACACACTATATCCCACCTTGTCG 59.868 47.826 0.00 0.00 0.00 4.35
3130 4994 4.755266 ACACACTATATCCCACCTTGTC 57.245 45.455 0.00 0.00 0.00 3.18
3132 4996 9.436957 GATAATAACACACTATATCCCACCTTG 57.563 37.037 0.00 0.00 0.00 3.61
3133 4997 8.603304 GGATAATAACACACTATATCCCACCTT 58.397 37.037 0.00 0.00 0.00 3.50
3135 4999 7.039882 CGGATAATAACACACTATATCCCACC 58.960 42.308 0.00 0.00 30.95 4.61
3136 5000 7.609056 ACGGATAATAACACACTATATCCCAC 58.391 38.462 0.00 0.00 30.95 4.61
3137 5001 7.786046 ACGGATAATAACACACTATATCCCA 57.214 36.000 0.00 0.00 30.95 4.37
3164 5028 8.776376 TGCAAGTTTTTCTTTTCTTTCAAGAT 57.224 26.923 0.00 0.00 32.56 2.40
3165 5029 8.087750 TCTGCAAGTTTTTCTTTTCTTTCAAGA 58.912 29.630 0.00 0.00 33.63 3.02
3166 5030 8.243289 TCTGCAAGTTTTTCTTTTCTTTCAAG 57.757 30.769 0.00 0.00 33.63 3.02
3169 5033 9.301153 TGTATCTGCAAGTTTTTCTTTTCTTTC 57.699 29.630 0.00 0.00 33.63 2.62
3178 5461 8.289618 TGTGAAGTATGTATCTGCAAGTTTTTC 58.710 33.333 0.00 0.00 33.76 2.29
3186 5469 4.817318 TGGTGTGAAGTATGTATCTGCA 57.183 40.909 0.00 0.00 0.00 4.41
3204 5487 1.700042 GGCCCTACAGCTAGCATGGT 61.700 60.000 18.83 14.13 0.00 3.55
3207 5490 0.399454 CATGGCCCTACAGCTAGCAT 59.601 55.000 18.83 7.15 0.00 3.79
3273 5557 6.039270 GGTTTAGATGTGCAATACTTATGGCA 59.961 38.462 0.00 0.00 40.19 4.92
3274 5558 6.438763 GGTTTAGATGTGCAATACTTATGGC 58.561 40.000 0.00 0.00 33.16 4.40
3275 5559 6.016276 GGGGTTTAGATGTGCAATACTTATGG 60.016 42.308 0.00 0.00 0.00 2.74
3276 5560 6.545666 TGGGGTTTAGATGTGCAATACTTATG 59.454 38.462 0.00 0.00 0.00 1.90
3277 5561 6.668645 TGGGGTTTAGATGTGCAATACTTAT 58.331 36.000 0.00 0.00 0.00 1.73
3278 5562 6.068461 TGGGGTTTAGATGTGCAATACTTA 57.932 37.500 0.00 0.00 0.00 2.24
3279 5563 4.929479 TGGGGTTTAGATGTGCAATACTT 58.071 39.130 0.00 0.00 0.00 2.24
3280 5564 4.584638 TGGGGTTTAGATGTGCAATACT 57.415 40.909 0.00 0.00 0.00 2.12
3281 5565 5.852282 AATGGGGTTTAGATGTGCAATAC 57.148 39.130 0.00 0.00 0.00 1.89
3282 5566 5.954752 TGAAATGGGGTTTAGATGTGCAATA 59.045 36.000 0.00 0.00 0.00 1.90
3283 5567 4.776837 TGAAATGGGGTTTAGATGTGCAAT 59.223 37.500 0.00 0.00 0.00 3.56
3284 5568 4.155709 TGAAATGGGGTTTAGATGTGCAA 58.844 39.130 0.00 0.00 0.00 4.08
3285 5569 3.772387 TGAAATGGGGTTTAGATGTGCA 58.228 40.909 0.00 0.00 0.00 4.57
3286 5570 5.105392 TCAATGAAATGGGGTTTAGATGTGC 60.105 40.000 0.00 0.00 0.00 4.57
3287 5571 6.528537 TCAATGAAATGGGGTTTAGATGTG 57.471 37.500 0.00 0.00 0.00 3.21
3288 5572 7.128077 AGATCAATGAAATGGGGTTTAGATGT 58.872 34.615 0.00 0.00 0.00 3.06
3289 5573 7.592885 AGATCAATGAAATGGGGTTTAGATG 57.407 36.000 0.00 0.00 0.00 2.90
3290 5574 9.136323 GTAAGATCAATGAAATGGGGTTTAGAT 57.864 33.333 0.00 0.00 0.00 1.98
3291 5575 8.112822 TGTAAGATCAATGAAATGGGGTTTAGA 58.887 33.333 0.00 0.00 0.00 2.10
3292 5576 8.292444 TGTAAGATCAATGAAATGGGGTTTAG 57.708 34.615 0.00 0.00 0.00 1.85
3293 5577 8.837099 ATGTAAGATCAATGAAATGGGGTTTA 57.163 30.769 0.00 0.00 0.00 2.01
3294 5578 7.399765 TGATGTAAGATCAATGAAATGGGGTTT 59.600 33.333 0.00 0.00 0.00 3.27
3295 5579 6.896860 TGATGTAAGATCAATGAAATGGGGTT 59.103 34.615 0.00 0.00 0.00 4.11
3296 5580 6.434302 TGATGTAAGATCAATGAAATGGGGT 58.566 36.000 0.00 0.00 0.00 4.95
3297 5581 6.964807 TGATGTAAGATCAATGAAATGGGG 57.035 37.500 0.00 0.00 0.00 4.96
3298 5582 8.229253 TCTTGATGTAAGATCAATGAAATGGG 57.771 34.615 0.00 0.00 40.43 4.00
3351 5635 8.761689 AGTGGGTGAATCAAGCATAAAAATAAT 58.238 29.630 0.00 0.00 0.00 1.28
3352 5636 8.133024 AGTGGGTGAATCAAGCATAAAAATAA 57.867 30.769 0.00 0.00 0.00 1.40
3353 5637 7.716799 AGTGGGTGAATCAAGCATAAAAATA 57.283 32.000 0.00 0.00 0.00 1.40
3354 5638 6.610075 AGTGGGTGAATCAAGCATAAAAAT 57.390 33.333 0.00 0.00 0.00 1.82
3355 5639 6.418057 AAGTGGGTGAATCAAGCATAAAAA 57.582 33.333 0.00 0.00 0.00 1.94
3356 5640 6.945435 TCTAAGTGGGTGAATCAAGCATAAAA 59.055 34.615 0.00 0.00 0.00 1.52
3357 5641 6.480763 TCTAAGTGGGTGAATCAAGCATAAA 58.519 36.000 0.00 0.00 0.00 1.40
3358 5642 6.061022 TCTAAGTGGGTGAATCAAGCATAA 57.939 37.500 0.00 0.00 0.00 1.90
3359 5643 5.692115 TCTAAGTGGGTGAATCAAGCATA 57.308 39.130 0.00 0.00 0.00 3.14
3360 5644 4.574674 TCTAAGTGGGTGAATCAAGCAT 57.425 40.909 0.00 0.00 0.00 3.79
3361 5645 4.263462 ACATCTAAGTGGGTGAATCAAGCA 60.263 41.667 0.00 0.00 0.00 3.91
3362 5646 4.095483 CACATCTAAGTGGGTGAATCAAGC 59.905 45.833 0.00 0.00 35.88 4.01
3363 5647 4.095483 GCACATCTAAGTGGGTGAATCAAG 59.905 45.833 0.00 0.00 39.87 3.02
3364 5648 4.009675 GCACATCTAAGTGGGTGAATCAA 58.990 43.478 0.00 0.00 39.87 2.57
3365 5649 3.008923 TGCACATCTAAGTGGGTGAATCA 59.991 43.478 0.00 0.00 39.87 2.57
3366 5650 3.609853 TGCACATCTAAGTGGGTGAATC 58.390 45.455 0.00 0.00 39.87 2.52
3367 5651 3.719268 TGCACATCTAAGTGGGTGAAT 57.281 42.857 0.00 0.00 39.87 2.57
3368 5652 3.500448 TTGCACATCTAAGTGGGTGAA 57.500 42.857 0.00 0.00 39.87 3.18
3369 5653 3.719268 ATTGCACATCTAAGTGGGTGA 57.281 42.857 0.00 0.00 39.87 4.02
3370 5654 4.943705 AGTTATTGCACATCTAAGTGGGTG 59.056 41.667 0.00 0.00 39.87 4.61
3371 5655 5.179452 AGTTATTGCACATCTAAGTGGGT 57.821 39.130 0.00 0.00 39.87 4.51
3372 5656 6.260936 CCTTAGTTATTGCACATCTAAGTGGG 59.739 42.308 17.73 7.41 39.87 4.61
3373 5657 6.238484 GCCTTAGTTATTGCACATCTAAGTGG 60.238 42.308 17.73 10.70 39.87 4.00
3374 5658 6.316140 TGCCTTAGTTATTGCACATCTAAGTG 59.684 38.462 17.73 13.14 42.37 3.16
3375 5659 6.414732 TGCCTTAGTTATTGCACATCTAAGT 58.585 36.000 17.73 7.66 37.15 2.24
3376 5660 6.925610 TGCCTTAGTTATTGCACATCTAAG 57.074 37.500 14.73 14.73 38.01 2.18
3384 5668 6.233905 TCTAGATGTGCCTTAGTTATTGCA 57.766 37.500 0.00 0.00 0.00 4.08
3385 5669 8.877779 CATATCTAGATGTGCCTTAGTTATTGC 58.122 37.037 15.51 0.00 0.00 3.56
3386 5670 8.877779 GCATATCTAGATGTGCCTTAGTTATTG 58.122 37.037 32.93 6.69 46.14 1.90
3398 5682 5.092105 GTGTCTAGCGCATATCTAGATGTG 58.908 45.833 21.61 21.61 42.90 3.21
3399 5683 4.762251 TGTGTCTAGCGCATATCTAGATGT 59.238 41.667 15.79 5.75 42.90 3.06
3400 5684 5.092105 GTGTGTCTAGCGCATATCTAGATG 58.908 45.833 15.79 2.00 42.90 2.90
3401 5685 4.156922 GGTGTGTCTAGCGCATATCTAGAT 59.843 45.833 11.47 10.73 42.90 1.98
3402 5686 3.502595 GGTGTGTCTAGCGCATATCTAGA 59.497 47.826 11.47 4.47 39.94 2.43
3403 5687 3.668226 CGGTGTGTCTAGCGCATATCTAG 60.668 52.174 11.47 1.58 40.03 2.43
3404 5688 2.225727 CGGTGTGTCTAGCGCATATCTA 59.774 50.000 11.47 0.00 40.03 1.98
3405 5689 1.001268 CGGTGTGTCTAGCGCATATCT 60.001 52.381 11.47 0.00 40.03 1.98
3406 5690 1.001706 TCGGTGTGTCTAGCGCATATC 60.002 52.381 11.47 0.00 41.00 1.63
3407 5691 1.029681 TCGGTGTGTCTAGCGCATAT 58.970 50.000 11.47 0.00 41.00 1.78
3408 5692 0.812549 TTCGGTGTGTCTAGCGCATA 59.187 50.000 11.47 0.00 41.00 3.14
3409 5693 0.037697 TTTCGGTGTGTCTAGCGCAT 60.038 50.000 11.47 0.00 41.00 4.73
3410 5694 0.037697 ATTTCGGTGTGTCTAGCGCA 60.038 50.000 11.47 0.00 41.00 6.09
3411 5695 1.076332 AATTTCGGTGTGTCTAGCGC 58.924 50.000 0.00 0.00 41.00 5.92
3412 5696 2.993899 AGAAATTTCGGTGTGTCTAGCG 59.006 45.455 12.42 0.00 42.44 4.26
3413 5697 4.329256 GGTAGAAATTTCGGTGTGTCTAGC 59.671 45.833 12.42 3.20 0.00 3.42
3414 5698 5.347907 GTGGTAGAAATTTCGGTGTGTCTAG 59.652 44.000 12.42 0.00 0.00 2.43
3415 5699 5.232463 GTGGTAGAAATTTCGGTGTGTCTA 58.768 41.667 12.42 0.00 0.00 2.59
3416 5700 4.062991 GTGGTAGAAATTTCGGTGTGTCT 58.937 43.478 12.42 0.00 0.00 3.41
3417 5701 4.400036 GTGGTAGAAATTTCGGTGTGTC 57.600 45.455 12.42 1.28 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.