Multiple sequence alignment - TraesCS3D01G412700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G412700 chr3D 100.000 5249 0 0 1 5249 525331892 525337140 0.000000e+00 9694
1 TraesCS3D01G412700 chr3D 82.617 1024 118 25 4240 5238 525343175 525344163 0.000000e+00 850
2 TraesCS3D01G412700 chr3D 88.197 305 31 5 358 662 416191860 416191561 5.000000e-95 359
3 TraesCS3D01G412700 chr3D 92.857 168 10 2 106 273 525332081 525332246 5.250000e-60 243
4 TraesCS3D01G412700 chr3D 88.235 85 8 1 106 190 525332164 525332246 3.340000e-17 100
5 TraesCS3D01G412700 chr3A 91.321 2316 130 29 2617 4920 659527815 659530071 0.000000e+00 3097
6 TraesCS3D01G412700 chr3A 91.806 537 24 9 797 1317 659524643 659525175 0.000000e+00 730
7 TraesCS3D01G412700 chr3A 80.000 955 107 52 1364 2277 659525191 659526102 3.450000e-176 628
8 TraesCS3D01G412700 chr3A 90.127 314 14 10 2279 2579 659527506 659527815 4.930000e-105 392
9 TraesCS3D01G412700 chr3A 81.081 370 64 4 2667 3033 382358947 382359313 1.850000e-74 291
10 TraesCS3D01G412700 chr3A 86.905 168 8 6 652 817 659524477 659524632 5.400000e-40 176
11 TraesCS3D01G412700 chr3B 91.159 2251 152 30 2616 4851 693075329 693077547 0.000000e+00 3011
12 TraesCS3D01G412700 chr3B 90.208 674 41 15 652 1317 693072405 693073061 0.000000e+00 856
13 TraesCS3D01G412700 chr3B 82.660 842 83 34 1364 2160 693073077 693073900 0.000000e+00 688
14 TraesCS3D01G412700 chr3B 91.111 270 10 7 2313 2577 693075066 693075326 2.330000e-93 353
15 TraesCS3D01G412700 chr3B 87.200 250 30 1 4540 4789 693080030 693080277 3.090000e-72 283
16 TraesCS3D01G412700 chr3B 80.198 202 27 5 1 190 693060853 693061053 7.090000e-29 139
17 TraesCS3D01G412700 chr1B 91.809 293 18 5 358 649 509055098 509055385 2.280000e-108 403
18 TraesCS3D01G412700 chr1B 80.928 388 68 5 2649 3033 546274534 546274918 8.540000e-78 302
19 TraesCS3D01G412700 chr6B 89.389 311 29 4 362 671 17963723 17964030 6.370000e-104 388
20 TraesCS3D01G412700 chr6B 88.235 306 32 4 367 671 17965377 17965679 3.860000e-96 363
21 TraesCS3D01G412700 chr6B 88.235 306 33 3 367 671 17968676 17968979 3.860000e-96 363
22 TraesCS3D01G412700 chr6B 88.235 306 33 3 367 671 17969501 17969804 3.860000e-96 363
23 TraesCS3D01G412700 chr6B 88.235 306 33 3 367 671 17970066 17970369 3.860000e-96 363
24 TraesCS3D01G412700 chr6B 87.908 306 34 3 367 671 17964552 17964855 1.800000e-94 357
25 TraesCS3D01G412700 chr2B 90.444 293 24 4 362 652 467859884 467860174 2.970000e-102 383
26 TraesCS3D01G412700 chr1D 81.351 370 63 5 2667 3033 406128740 406128374 3.970000e-76 296
27 TraesCS3D01G412700 chr1A 81.351 370 63 5 2667 3033 501037271 501036905 3.970000e-76 296
28 TraesCS3D01G412700 chr7A 78.100 379 75 7 2663 3037 542817649 542818023 3.160000e-57 233
29 TraesCS3D01G412700 chr7A 80.800 250 42 6 2791 3037 542971988 542972234 1.930000e-44 191
30 TraesCS3D01G412700 chr7D 83.673 245 38 2 2794 3037 457227293 457227050 4.090000e-56 230
31 TraesCS3D01G412700 chr7D 77.368 380 76 8 2663 3037 457597233 457596859 3.180000e-52 217
32 TraesCS3D01G412700 chr7B 82.449 245 41 2 2794 3037 479620816 479620573 4.120000e-51 213
33 TraesCS3D01G412700 chr7B 77.473 364 72 8 2679 3037 479646390 479646032 5.330000e-50 209


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G412700 chr3D 525331892 525337140 5248 False 9694.000000 9694 100.000000 1 5249 1 chr3D.!!$F1 5248
1 TraesCS3D01G412700 chr3D 525343175 525344163 988 False 850.000000 850 82.617000 4240 5238 1 chr3D.!!$F2 998
2 TraesCS3D01G412700 chr3A 659524477 659530071 5594 False 1004.600000 3097 88.031800 652 4920 5 chr3A.!!$F2 4268
3 TraesCS3D01G412700 chr3B 693072405 693080277 7872 False 1038.200000 3011 88.467600 652 4851 5 chr3B.!!$F2 4199
4 TraesCS3D01G412700 chr6B 17963723 17970369 6646 False 366.166667 388 88.372833 362 671 6 chr6B.!!$F1 309

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 0.166814 GCAAAAGCTAGTCGTGCTGG 59.833 55.0 0.00 0.0 41.03 4.85 F
936 2633 0.383002 CGTAGCGCACACAAACACAG 60.383 55.0 11.47 0.0 0.00 3.66 F
1627 3369 0.179078 GACGAGAGAGAGGTAGCGGA 60.179 60.0 0.00 0.0 0.00 5.54 F
2608 6345 0.031449 CAAATGGCGGGTTCGTTTGT 59.969 50.0 0.00 0.0 36.75 2.83 F
3328 7068 0.038251 GTGCTCACCGTGTCATCTCA 60.038 55.0 0.00 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1199 2912 0.100861 CTTTCGCGTCTCTCCCCTAC 59.899 60.0 5.77 0.0 0.00 3.18 R
2589 6326 0.031449 ACAAACGAACCCGCCATTTG 59.969 50.0 0.00 0.0 39.95 2.32 R
3373 7113 0.110056 GCAGAAACCGTGAGTGCATG 60.110 55.0 0.00 0.0 34.18 4.06 R
3746 7490 0.107831 AGTAACCCTTGTCGCTGCAA 59.892 50.0 0.00 0.0 0.00 4.08 R
4952 8721 1.094785 CAAAAGGATGTGCGGGGTAG 58.905 55.0 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.910688 ATGTATTACAGCGAGGTGGG 57.089 50.000 7.23 0.00 0.00 4.61
21 22 1.855295 TGTATTACAGCGAGGTGGGA 58.145 50.000 7.23 0.00 0.00 4.37
22 23 1.479323 TGTATTACAGCGAGGTGGGAC 59.521 52.381 7.23 0.41 0.00 4.46
23 24 1.755380 GTATTACAGCGAGGTGGGACT 59.245 52.381 7.23 0.00 0.00 3.85
24 25 2.154567 ATTACAGCGAGGTGGGACTA 57.845 50.000 7.23 0.00 0.00 2.59
25 26 1.180029 TTACAGCGAGGTGGGACTAC 58.820 55.000 7.23 0.00 0.00 2.73
26 27 0.330604 TACAGCGAGGTGGGACTACT 59.669 55.000 7.23 0.00 0.00 2.57
27 28 0.330604 ACAGCGAGGTGGGACTACTA 59.669 55.000 7.23 0.00 0.00 1.82
28 29 1.272313 ACAGCGAGGTGGGACTACTAA 60.272 52.381 7.23 0.00 0.00 2.24
29 30 2.032620 CAGCGAGGTGGGACTACTAAT 58.967 52.381 0.00 0.00 0.00 1.73
30 31 2.431057 CAGCGAGGTGGGACTACTAATT 59.569 50.000 0.00 0.00 0.00 1.40
31 32 2.694109 AGCGAGGTGGGACTACTAATTC 59.306 50.000 0.00 0.00 0.00 2.17
32 33 2.429610 GCGAGGTGGGACTACTAATTCA 59.570 50.000 0.00 0.00 0.00 2.57
33 34 3.118884 GCGAGGTGGGACTACTAATTCAA 60.119 47.826 0.00 0.00 0.00 2.69
34 35 4.622220 GCGAGGTGGGACTACTAATTCAAA 60.622 45.833 0.00 0.00 0.00 2.69
35 36 5.109903 CGAGGTGGGACTACTAATTCAAAG 58.890 45.833 0.00 0.00 0.00 2.77
36 37 5.429130 GAGGTGGGACTACTAATTCAAAGG 58.571 45.833 0.00 0.00 0.00 3.11
37 38 3.945921 GGTGGGACTACTAATTCAAAGGC 59.054 47.826 0.00 0.00 0.00 4.35
38 39 3.621715 GTGGGACTACTAATTCAAAGGCG 59.378 47.826 0.00 0.00 0.00 5.52
39 40 3.516300 TGGGACTACTAATTCAAAGGCGA 59.484 43.478 0.00 0.00 0.00 5.54
40 41 4.020039 TGGGACTACTAATTCAAAGGCGAA 60.020 41.667 0.00 0.00 0.00 4.70
41 42 4.331992 GGGACTACTAATTCAAAGGCGAAC 59.668 45.833 0.00 0.00 0.00 3.95
42 43 4.331992 GGACTACTAATTCAAAGGCGAACC 59.668 45.833 0.00 0.00 0.00 3.62
43 44 4.259356 ACTACTAATTCAAAGGCGAACCC 58.741 43.478 0.00 0.00 36.11 4.11
45 46 3.344515 ACTAATTCAAAGGCGAACCCTC 58.655 45.455 0.00 0.00 45.62 4.30
46 47 2.586648 AATTCAAAGGCGAACCCTCT 57.413 45.000 0.00 0.00 45.62 3.69
47 48 2.586648 ATTCAAAGGCGAACCCTCTT 57.413 45.000 0.00 0.00 45.62 2.85
48 49 2.358322 TTCAAAGGCGAACCCTCTTT 57.642 45.000 0.00 0.00 45.62 2.52
49 50 2.358322 TCAAAGGCGAACCCTCTTTT 57.642 45.000 0.00 0.00 45.62 2.27
50 51 1.953686 TCAAAGGCGAACCCTCTTTTG 59.046 47.619 0.00 0.00 45.62 2.44
51 52 1.681264 CAAAGGCGAACCCTCTTTTGT 59.319 47.619 0.00 0.00 45.62 2.83
52 53 2.882137 CAAAGGCGAACCCTCTTTTGTA 59.118 45.455 0.00 0.00 45.62 2.41
53 54 2.943036 AGGCGAACCCTCTTTTGTAA 57.057 45.000 0.00 0.00 41.21 2.41
54 55 3.434940 AGGCGAACCCTCTTTTGTAAT 57.565 42.857 0.00 0.00 41.21 1.89
55 56 4.563140 AGGCGAACCCTCTTTTGTAATA 57.437 40.909 0.00 0.00 41.21 0.98
56 57 4.514401 AGGCGAACCCTCTTTTGTAATAG 58.486 43.478 0.00 0.00 41.21 1.73
57 58 4.224370 AGGCGAACCCTCTTTTGTAATAGA 59.776 41.667 0.00 0.00 41.21 1.98
58 59 4.939439 GGCGAACCCTCTTTTGTAATAGAA 59.061 41.667 0.00 0.00 0.00 2.10
59 60 5.064834 GGCGAACCCTCTTTTGTAATAGAAG 59.935 44.000 0.00 0.00 0.00 2.85
60 61 5.447413 GCGAACCCTCTTTTGTAATAGAAGC 60.447 44.000 0.00 0.00 0.00 3.86
61 62 5.642063 CGAACCCTCTTTTGTAATAGAAGCA 59.358 40.000 0.00 0.00 0.00 3.91
62 63 6.148811 CGAACCCTCTTTTGTAATAGAAGCAA 59.851 38.462 0.00 0.00 0.00 3.91
63 64 7.308348 CGAACCCTCTTTTGTAATAGAAGCAAA 60.308 37.037 0.00 0.00 0.00 3.68
64 65 7.833285 ACCCTCTTTTGTAATAGAAGCAAAA 57.167 32.000 0.00 0.00 39.03 2.44
71 72 9.548208 CTTTTGTAATAGAAGCAAAAGCTAGTC 57.452 33.333 13.56 0.00 46.26 2.59
72 73 6.887376 TGTAATAGAAGCAAAAGCTAGTCG 57.113 37.500 0.00 0.00 0.00 4.18
73 74 6.395629 TGTAATAGAAGCAAAAGCTAGTCGT 58.604 36.000 0.00 0.00 0.00 4.34
74 75 5.786401 AATAGAAGCAAAAGCTAGTCGTG 57.214 39.130 0.00 0.00 0.00 4.35
75 76 1.801178 AGAAGCAAAAGCTAGTCGTGC 59.199 47.619 0.00 0.00 35.41 5.34
76 77 3.614399 AGCAAAAGCTAGTCGTGCT 57.386 47.368 6.54 6.54 43.32 4.40
77 78 1.151668 AGCAAAAGCTAGTCGTGCTG 58.848 50.000 10.31 0.00 43.66 4.41
78 79 0.166814 GCAAAAGCTAGTCGTGCTGG 59.833 55.000 0.00 0.00 41.03 4.85
79 80 1.512926 CAAAAGCTAGTCGTGCTGGT 58.487 50.000 0.00 0.00 41.03 4.00
80 81 1.873591 CAAAAGCTAGTCGTGCTGGTT 59.126 47.619 0.00 0.00 41.03 3.67
81 82 1.512926 AAAGCTAGTCGTGCTGGTTG 58.487 50.000 0.00 0.00 41.03 3.77
82 83 0.951040 AAGCTAGTCGTGCTGGTTGC 60.951 55.000 0.00 0.00 41.03 4.17
98 99 3.690745 GCAACCAGCAGGAGCAAT 58.309 55.556 0.35 0.00 45.49 3.56
99 100 2.872408 GCAACCAGCAGGAGCAATA 58.128 52.632 0.35 0.00 45.49 1.90
100 101 1.176527 GCAACCAGCAGGAGCAATAA 58.823 50.000 0.35 0.00 45.49 1.40
101 102 1.753073 GCAACCAGCAGGAGCAATAAT 59.247 47.619 0.35 0.00 45.49 1.28
102 103 2.167075 GCAACCAGCAGGAGCAATAATT 59.833 45.455 0.35 0.00 45.49 1.40
103 104 3.736126 GCAACCAGCAGGAGCAATAATTC 60.736 47.826 0.35 0.00 45.49 2.17
104 105 2.659428 ACCAGCAGGAGCAATAATTCC 58.341 47.619 0.35 0.00 45.49 3.01
105 106 2.025037 ACCAGCAGGAGCAATAATTCCA 60.025 45.455 0.35 0.00 45.49 3.53
106 107 2.360165 CCAGCAGGAGCAATAATTCCAC 59.640 50.000 0.00 0.00 45.49 4.02
107 108 2.360165 CAGCAGGAGCAATAATTCCACC 59.640 50.000 0.00 0.00 45.49 4.61
108 109 2.243221 AGCAGGAGCAATAATTCCACCT 59.757 45.455 0.00 0.00 45.49 4.00
109 110 2.620585 GCAGGAGCAATAATTCCACCTC 59.379 50.000 0.00 0.00 41.58 3.85
110 111 3.217626 CAGGAGCAATAATTCCACCTCC 58.782 50.000 0.00 0.00 39.25 4.30
111 112 2.175715 AGGAGCAATAATTCCACCTCCC 59.824 50.000 10.02 0.00 39.68 4.30
112 113 2.175715 GGAGCAATAATTCCACCTCCCT 59.824 50.000 0.00 0.00 34.26 4.20
113 114 3.217626 GAGCAATAATTCCACCTCCCTG 58.782 50.000 0.00 0.00 0.00 4.45
114 115 1.683385 GCAATAATTCCACCTCCCTGC 59.317 52.381 0.00 0.00 0.00 4.85
115 116 2.949963 GCAATAATTCCACCTCCCTGCA 60.950 50.000 0.00 0.00 0.00 4.41
116 117 3.569491 CAATAATTCCACCTCCCTGCAT 58.431 45.455 0.00 0.00 0.00 3.96
117 118 3.962718 CAATAATTCCACCTCCCTGCATT 59.037 43.478 0.00 0.00 0.00 3.56
118 119 5.139727 CAATAATTCCACCTCCCTGCATTA 58.860 41.667 0.00 0.00 0.00 1.90
119 120 3.303351 AATTCCACCTCCCTGCATTAG 57.697 47.619 0.00 0.00 0.00 1.73
120 121 1.668826 TTCCACCTCCCTGCATTAGT 58.331 50.000 0.00 0.00 0.00 2.24
121 122 1.668826 TCCACCTCCCTGCATTAGTT 58.331 50.000 0.00 0.00 0.00 2.24
122 123 1.281867 TCCACCTCCCTGCATTAGTTG 59.718 52.381 0.00 0.00 0.00 3.16
123 124 1.683011 CCACCTCCCTGCATTAGTTGG 60.683 57.143 0.00 0.00 0.00 3.77
124 125 1.004745 CACCTCCCTGCATTAGTTGGT 59.995 52.381 0.00 0.00 0.00 3.67
125 126 2.238646 CACCTCCCTGCATTAGTTGGTA 59.761 50.000 0.00 0.00 0.00 3.25
126 127 3.117888 CACCTCCCTGCATTAGTTGGTAT 60.118 47.826 0.00 0.00 0.00 2.73
127 128 4.102524 CACCTCCCTGCATTAGTTGGTATA 59.897 45.833 0.00 0.00 0.00 1.47
128 129 4.102681 ACCTCCCTGCATTAGTTGGTATAC 59.897 45.833 0.00 0.00 0.00 1.47
129 130 4.102524 CCTCCCTGCATTAGTTGGTATACA 59.897 45.833 5.01 0.00 0.00 2.29
130 131 5.290493 TCCCTGCATTAGTTGGTATACAG 57.710 43.478 5.01 0.00 0.00 2.74
131 132 4.966168 TCCCTGCATTAGTTGGTATACAGA 59.034 41.667 5.01 0.00 0.00 3.41
132 133 5.606749 TCCCTGCATTAGTTGGTATACAGAT 59.393 40.000 5.01 0.00 0.00 2.90
133 134 6.785466 TCCCTGCATTAGTTGGTATACAGATA 59.215 38.462 5.01 0.00 0.00 1.98
134 135 6.874134 CCCTGCATTAGTTGGTATACAGATAC 59.126 42.308 5.01 0.00 37.75 2.24
135 136 7.441836 CCTGCATTAGTTGGTATACAGATACA 58.558 38.462 5.01 0.00 39.91 2.29
136 137 7.931407 CCTGCATTAGTTGGTATACAGATACAA 59.069 37.037 5.01 0.00 39.91 2.41
137 138 8.887036 TGCATTAGTTGGTATACAGATACAAG 57.113 34.615 5.01 0.00 39.91 3.16
138 139 8.482943 TGCATTAGTTGGTATACAGATACAAGT 58.517 33.333 5.01 5.02 39.91 3.16
139 140 9.326413 GCATTAGTTGGTATACAGATACAAGTT 57.674 33.333 5.01 0.00 39.91 2.66
196 197 8.476829 AGAAATAGAGATAGAGATACCTCCCT 57.523 38.462 0.00 0.00 40.30 4.20
197 198 8.336235 AGAAATAGAGATAGAGATACCTCCCTG 58.664 40.741 0.00 0.00 40.30 4.45
198 199 4.316025 AGAGATAGAGATACCTCCCTGC 57.684 50.000 0.00 0.00 40.30 4.85
199 200 3.660177 AGAGATAGAGATACCTCCCTGCA 59.340 47.826 0.00 0.00 40.30 4.41
200 201 4.294702 AGAGATAGAGATACCTCCCTGCAT 59.705 45.833 0.00 0.00 40.30 3.96
201 202 5.022227 AGATAGAGATACCTCCCTGCATT 57.978 43.478 0.00 0.00 40.30 3.56
202 203 6.011185 AGAGATAGAGATACCTCCCTGCATTA 60.011 42.308 0.00 0.00 40.30 1.90
203 204 6.194235 AGATAGAGATACCTCCCTGCATTAG 58.806 44.000 0.00 0.00 40.30 1.73
204 205 4.206244 AGAGATACCTCCCTGCATTAGT 57.794 45.455 0.00 0.00 40.30 2.24
205 206 4.561752 AGAGATACCTCCCTGCATTAGTT 58.438 43.478 0.00 0.00 40.30 2.24
206 207 4.346418 AGAGATACCTCCCTGCATTAGTTG 59.654 45.833 0.00 0.00 40.30 3.16
207 208 5.040127 GAGATACCTCCCTGCATTAGTTGC 61.040 50.000 0.00 0.00 41.46 4.17
208 209 7.204268 GAGATACCTCCCTGCATTAGTTGCT 62.204 48.000 0.00 0.00 41.56 3.91
209 210 7.924151 GAGATACCTCCCTGCATTAGTTGCTA 61.924 46.154 0.00 0.00 41.56 3.49
210 211 9.310724 GAGATACCTCCCTGCATTAGTTGCTAA 62.311 44.444 0.00 0.00 41.56 3.09
279 280 8.476829 AAAGATAGAGATAGAGATACCTCCCT 57.523 38.462 0.00 0.00 40.30 4.20
280 281 7.451731 AGATAGAGATAGAGATACCTCCCTG 57.548 44.000 0.00 0.00 40.30 4.45
281 282 4.316025 AGAGATAGAGATACCTCCCTGC 57.684 50.000 0.00 0.00 40.30 4.85
282 283 3.660177 AGAGATAGAGATACCTCCCTGCA 59.340 47.826 0.00 0.00 40.30 4.41
283 284 4.294702 AGAGATAGAGATACCTCCCTGCAT 59.705 45.833 0.00 0.00 40.30 3.96
284 285 5.022227 AGATAGAGATACCTCCCTGCATT 57.978 43.478 0.00 0.00 40.30 3.56
285 286 6.011185 AGAGATAGAGATACCTCCCTGCATTA 60.011 42.308 0.00 0.00 40.30 1.90
286 287 6.194235 AGATAGAGATACCTCCCTGCATTAG 58.806 44.000 0.00 0.00 40.30 1.73
287 288 4.206244 AGAGATACCTCCCTGCATTAGT 57.794 45.455 0.00 0.00 40.30 2.24
288 289 4.561752 AGAGATACCTCCCTGCATTAGTT 58.438 43.478 0.00 0.00 40.30 2.24
289 290 4.346418 AGAGATACCTCCCTGCATTAGTTG 59.654 45.833 0.00 0.00 40.30 3.16
290 291 4.298626 AGATACCTCCCTGCATTAGTTGA 58.701 43.478 0.00 0.00 0.00 3.18
291 292 4.910304 AGATACCTCCCTGCATTAGTTGAT 59.090 41.667 0.00 0.00 0.00 2.57
292 293 6.084738 AGATACCTCCCTGCATTAGTTGATA 58.915 40.000 0.00 0.00 0.00 2.15
293 294 6.732862 AGATACCTCCCTGCATTAGTTGATAT 59.267 38.462 0.00 0.00 0.00 1.63
294 295 7.901322 AGATACCTCCCTGCATTAGTTGATATA 59.099 37.037 0.00 0.00 0.00 0.86
295 296 6.365970 ACCTCCCTGCATTAGTTGATATAG 57.634 41.667 0.00 0.00 0.00 1.31
296 297 6.084738 ACCTCCCTGCATTAGTTGATATAGA 58.915 40.000 0.00 0.00 0.00 1.98
297 298 6.732862 ACCTCCCTGCATTAGTTGATATAGAT 59.267 38.462 0.00 0.00 0.00 1.98
298 299 7.901322 ACCTCCCTGCATTAGTTGATATAGATA 59.099 37.037 0.00 0.00 0.00 1.98
299 300 8.932610 CCTCCCTGCATTAGTTGATATAGATAT 58.067 37.037 0.00 0.00 0.00 1.63
423 424 6.413783 TTTTACCTTTCTTTTCATCACCCC 57.586 37.500 0.00 0.00 0.00 4.95
437 438 0.605589 CACCCCTTCGTCCAACCTTC 60.606 60.000 0.00 0.00 0.00 3.46
451 452 6.542370 CGTCCAACCTTCCTTGTATGATAATT 59.458 38.462 0.00 0.00 0.00 1.40
454 455 9.627123 TCCAACCTTCCTTGTATGATAATTAAG 57.373 33.333 0.00 0.00 0.00 1.85
545 2194 9.605951 AAATATAAGGTAATTCATGGGCAGAAT 57.394 29.630 0.00 0.00 37.30 2.40
551 2200 5.987347 GGTAATTCATGGGCAGAATTTGATG 59.013 40.000 14.17 0.00 41.54 3.07
586 2235 6.706055 ACACAATCACACTATTACGAACAG 57.294 37.500 0.00 0.00 0.00 3.16
595 2244 7.543172 TCACACTATTACGAACAGGTAAATCAC 59.457 37.037 0.00 0.00 36.10 3.06
596 2245 6.529125 ACACTATTACGAACAGGTAAATCACG 59.471 38.462 0.00 0.00 36.10 4.35
607 2256 5.163581 ACAGGTAAATCACGAGCTAACGTAT 60.164 40.000 0.00 0.00 44.76 3.06
706 2356 3.704061 GAGAGCCTACAAGAATCTCCTGT 59.296 47.826 0.00 0.00 32.10 4.00
710 2360 4.472833 AGCCTACAAGAATCTCCTGTGATT 59.527 41.667 0.00 0.00 39.14 2.57
712 2362 6.328672 AGCCTACAAGAATCTCCTGTGATTAT 59.671 38.462 0.00 0.00 36.86 1.28
713 2363 6.995091 GCCTACAAGAATCTCCTGTGATTATT 59.005 38.462 0.00 0.00 38.07 1.40
714 2364 8.150945 GCCTACAAGAATCTCCTGTGATTATTA 58.849 37.037 0.00 0.00 36.22 0.98
717 2367 8.738645 ACAAGAATCTCCTGTGATTATTAACC 57.261 34.615 2.61 0.00 36.22 2.85
718 2368 8.328758 ACAAGAATCTCCTGTGATTATTAACCA 58.671 33.333 2.61 0.00 36.22 3.67
719 2369 9.177608 CAAGAATCTCCTGTGATTATTAACCAA 57.822 33.333 2.61 0.00 36.22 3.67
720 2370 9.753674 AAGAATCTCCTGTGATTATTAACCAAA 57.246 29.630 1.28 0.00 36.49 3.28
721 2371 9.178758 AGAATCTCCTGTGATTATTAACCAAAC 57.821 33.333 0.00 0.00 36.86 2.93
722 2372 8.877864 AATCTCCTGTGATTATTAACCAAACA 57.122 30.769 0.00 0.00 35.18 2.83
723 2373 7.681939 TCTCCTGTGATTATTAACCAAACAC 57.318 36.000 0.00 0.00 0.00 3.32
724 2374 6.370442 TCTCCTGTGATTATTAACCAAACACG 59.630 38.462 0.00 0.00 0.00 4.49
794 2456 2.325583 AACATATACACCCGTGGCTG 57.674 50.000 0.00 0.00 34.19 4.85
796 2458 0.884704 CATATACACCCGTGGCTGGC 60.885 60.000 0.00 0.00 34.19 4.85
868 2563 2.890766 GCCACTTCGGTTCCCTCCA 61.891 63.158 0.00 0.00 36.97 3.86
876 2571 1.539124 GGTTCCCTCCACTCACCCT 60.539 63.158 0.00 0.00 0.00 4.34
915 2612 4.653888 CGGCCAAACCCCGTTCCT 62.654 66.667 2.24 0.00 40.84 3.36
936 2633 0.383002 CGTAGCGCACACAAACACAG 60.383 55.000 11.47 0.00 0.00 3.66
981 2682 2.269241 GCCAAGGGAAGGGACGAG 59.731 66.667 0.00 0.00 0.00 4.18
983 2684 2.294078 CCAAGGGAAGGGACGAGCT 61.294 63.158 0.00 0.00 0.00 4.09
995 2701 4.514577 CGAGCTGAACGGGGCGAT 62.515 66.667 0.00 0.00 0.00 4.58
1029 2735 4.906537 AACGGCGCCAAGGGGTTT 62.907 61.111 28.98 3.99 36.17 3.27
1156 2863 4.392166 TAGGTGAGGGCGAGGGCA 62.392 66.667 0.00 0.00 42.47 5.36
1209 2922 0.450983 GTCGTTGTCGTAGGGGAGAG 59.549 60.000 0.00 0.00 38.33 3.20
1231 2944 2.092211 ACGCGAAAGAATTCTGTTAGCG 59.908 45.455 30.99 30.99 42.28 4.26
1296 3009 1.202615 GCCCGAACTCCCCTGTAATAC 60.203 57.143 0.00 0.00 0.00 1.89
1317 3030 3.714001 GGAACCGGTGACCTCCCC 61.714 72.222 8.52 0.00 0.00 4.81
1325 3038 3.364964 TGACCTCCCCGATCCCCT 61.365 66.667 0.00 0.00 0.00 4.79
1329 3042 4.541648 CTCCCCGATCCCCTCCGT 62.542 72.222 0.00 0.00 0.00 4.69
1330 3043 4.853142 TCCCCGATCCCCTCCGTG 62.853 72.222 0.00 0.00 0.00 4.94
1333 3046 3.537874 CCGATCCCCTCCGTGGTC 61.538 72.222 0.00 0.00 0.00 4.02
1334 3047 3.900892 CGATCCCCTCCGTGGTCG 61.901 72.222 0.00 0.00 0.00 4.79
1335 3048 4.222847 GATCCCCTCCGTGGTCGC 62.223 72.222 0.00 0.00 35.54 5.19
1339 3052 3.528370 CCCTCCGTGGTCGCCTAG 61.528 72.222 0.00 0.00 35.54 3.02
1340 3053 2.439701 CCTCCGTGGTCGCCTAGA 60.440 66.667 0.00 0.00 35.54 2.43
1341 3054 2.482333 CCTCCGTGGTCGCCTAGAG 61.482 68.421 0.00 0.00 35.54 2.43
1342 3055 1.451567 CTCCGTGGTCGCCTAGAGA 60.452 63.158 0.00 0.00 35.54 3.10
1343 3056 1.440938 CTCCGTGGTCGCCTAGAGAG 61.441 65.000 0.00 0.00 35.54 3.20
1344 3057 1.451567 CCGTGGTCGCCTAGAGAGA 60.452 63.158 0.00 0.00 35.54 3.10
1345 3058 1.440938 CCGTGGTCGCCTAGAGAGAG 61.441 65.000 0.00 0.00 35.54 3.20
1346 3059 0.462225 CGTGGTCGCCTAGAGAGAGA 60.462 60.000 0.00 0.00 0.00 3.10
1347 3060 1.305201 GTGGTCGCCTAGAGAGAGAG 58.695 60.000 0.00 0.00 0.00 3.20
1348 3061 1.134340 GTGGTCGCCTAGAGAGAGAGA 60.134 57.143 0.00 0.00 0.00 3.10
1349 3062 1.140052 TGGTCGCCTAGAGAGAGAGAG 59.860 57.143 0.00 0.00 0.00 3.20
1350 3063 1.414919 GGTCGCCTAGAGAGAGAGAGA 59.585 57.143 0.00 0.00 0.00 3.10
1351 3064 2.548067 GGTCGCCTAGAGAGAGAGAGAG 60.548 59.091 0.00 0.00 0.00 3.20
1352 3065 2.364324 GTCGCCTAGAGAGAGAGAGAGA 59.636 54.545 0.00 0.00 0.00 3.10
1353 3066 3.006967 GTCGCCTAGAGAGAGAGAGAGAT 59.993 52.174 0.00 0.00 0.00 2.75
1354 3067 3.006859 TCGCCTAGAGAGAGAGAGAGATG 59.993 52.174 0.00 0.00 0.00 2.90
1355 3068 3.006859 CGCCTAGAGAGAGAGAGAGATGA 59.993 52.174 0.00 0.00 0.00 2.92
1356 3069 4.573900 GCCTAGAGAGAGAGAGAGATGAG 58.426 52.174 0.00 0.00 0.00 2.90
1357 3070 4.564406 GCCTAGAGAGAGAGAGAGATGAGG 60.564 54.167 0.00 0.00 0.00 3.86
1358 3071 4.019860 CCTAGAGAGAGAGAGAGATGAGGG 60.020 54.167 0.00 0.00 0.00 4.30
1359 3072 3.397527 AGAGAGAGAGAGAGATGAGGGT 58.602 50.000 0.00 0.00 0.00 4.34
1360 3073 3.788142 AGAGAGAGAGAGAGATGAGGGTT 59.212 47.826 0.00 0.00 0.00 4.11
1361 3074 4.975147 AGAGAGAGAGAGAGATGAGGGTTA 59.025 45.833 0.00 0.00 0.00 2.85
1362 3075 5.048846 AGAGAGAGAGAGATGAGGGTTAC 57.951 47.826 0.00 0.00 0.00 2.50
1395 3108 0.539901 ATCGGCGCTAGATGGTACCT 60.540 55.000 14.36 0.00 0.00 3.08
1396 3109 1.007271 CGGCGCTAGATGGTACCTG 60.007 63.158 14.36 0.00 0.00 4.00
1441 3154 4.760047 GTGCTGGGCGTCCGACAT 62.760 66.667 0.00 0.00 35.24 3.06
1442 3155 4.758251 TGCTGGGCGTCCGACATG 62.758 66.667 0.00 0.00 35.24 3.21
1489 3213 2.697761 GCGTAGAGGAGCGTGACCA 61.698 63.158 0.00 0.00 0.00 4.02
1603 3345 4.095782 GCGTGAGATACTGAGAGAAAGACT 59.904 45.833 0.00 0.00 0.00 3.24
1625 3367 1.202486 AGAGACGAGAGAGAGGTAGCG 60.202 57.143 0.00 0.00 0.00 4.26
1627 3369 0.179078 GACGAGAGAGAGGTAGCGGA 60.179 60.000 0.00 0.00 0.00 5.54
1628 3370 0.252479 ACGAGAGAGAGGTAGCGGAA 59.748 55.000 0.00 0.00 0.00 4.30
1675 3421 2.434843 TAGATGTGGAGCAGGGCGG 61.435 63.158 0.00 0.00 0.00 6.13
1706 3452 4.247380 GGGGAGGATGAGCAGCGG 62.247 72.222 0.00 0.00 0.00 5.52
1739 3485 1.005340 CAGCGCAGATCTTCTTGGAC 58.995 55.000 11.47 0.00 0.00 4.02
1741 3487 0.458543 GCGCAGATCTTCTTGGACGA 60.459 55.000 0.30 0.00 0.00 4.20
1850 3625 4.072088 GGCACACACGTACAGCGC 62.072 66.667 0.00 0.00 46.11 5.92
1876 3651 4.645809 GCCAAGGCCAAGGACTAG 57.354 61.111 16.96 0.00 30.17 2.57
1877 3652 1.685820 GCCAAGGCCAAGGACTAGT 59.314 57.895 16.96 0.00 30.17 2.57
1878 3653 0.909623 GCCAAGGCCAAGGACTAGTA 59.090 55.000 16.96 0.00 30.17 1.82
1879 3654 1.490910 GCCAAGGCCAAGGACTAGTAT 59.509 52.381 16.96 0.00 30.17 2.12
1880 3655 2.704065 GCCAAGGCCAAGGACTAGTATA 59.296 50.000 16.96 0.00 30.17 1.47
1881 3656 3.494573 GCCAAGGCCAAGGACTAGTATAC 60.495 52.174 16.96 0.00 30.17 1.47
1889 3664 5.009811 GCCAAGGACTAGTATACGATCAACT 59.990 44.000 0.00 0.00 0.00 3.16
1890 3665 6.461231 GCCAAGGACTAGTATACGATCAACTT 60.461 42.308 0.00 0.00 0.00 2.66
1915 3690 1.144057 GACAGATGGACGCCCGATT 59.856 57.895 0.00 0.00 34.29 3.34
1916 3691 1.153369 ACAGATGGACGCCCGATTG 60.153 57.895 0.00 0.00 34.29 2.67
1946 3723 4.907034 CGAGCGTGTCCGATCCGG 62.907 72.222 0.00 0.00 46.33 5.14
1960 3737 1.201880 GATCCGGCGAGTAACTATCCC 59.798 57.143 9.30 0.00 0.00 3.85
1986 3763 4.584518 TGCATGCCGGCCCCATAG 62.585 66.667 26.77 8.25 0.00 2.23
2003 3784 4.384056 CCATAGATGTCGCCAATTTCTCT 58.616 43.478 0.00 0.00 0.00 3.10
2019 3800 4.821589 CTTCTGCGCCCGTCCTCC 62.822 72.222 4.18 0.00 0.00 4.30
2025 3806 4.778143 CGCCCGTCCTCCCCTTTG 62.778 72.222 0.00 0.00 0.00 2.77
2026 3807 3.647771 GCCCGTCCTCCCCTTTGT 61.648 66.667 0.00 0.00 0.00 2.83
2027 3808 3.167414 CCCGTCCTCCCCTTTGTT 58.833 61.111 0.00 0.00 0.00 2.83
2028 3809 1.303317 CCCGTCCTCCCCTTTGTTG 60.303 63.158 0.00 0.00 0.00 3.33
2029 3810 1.971695 CCGTCCTCCCCTTTGTTGC 60.972 63.158 0.00 0.00 0.00 4.17
2030 3811 1.073199 CGTCCTCCCCTTTGTTGCT 59.927 57.895 0.00 0.00 0.00 3.91
2031 3812 0.537371 CGTCCTCCCCTTTGTTGCTT 60.537 55.000 0.00 0.00 0.00 3.91
2032 3813 0.961753 GTCCTCCCCTTTGTTGCTTG 59.038 55.000 0.00 0.00 0.00 4.01
2033 3814 0.827507 TCCTCCCCTTTGTTGCTTGC 60.828 55.000 0.00 0.00 0.00 4.01
2034 3815 1.286880 CTCCCCTTTGTTGCTTGCG 59.713 57.895 0.00 0.00 0.00 4.85
2035 3816 2.356194 CCCCTTTGTTGCTTGCGC 60.356 61.111 0.00 0.00 0.00 6.09
2036 3817 2.730094 CCCTTTGTTGCTTGCGCT 59.270 55.556 9.73 0.00 36.97 5.92
2037 3818 1.662446 CCCTTTGTTGCTTGCGCTG 60.662 57.895 9.73 2.28 36.97 5.18
2038 3819 1.066257 CCTTTGTTGCTTGCGCTGT 59.934 52.632 9.73 0.00 36.97 4.40
2039 3820 0.936297 CCTTTGTTGCTTGCGCTGTC 60.936 55.000 9.73 0.00 36.97 3.51
2040 3821 0.936297 CTTTGTTGCTTGCGCTGTCC 60.936 55.000 9.73 0.00 36.97 4.02
2041 3822 1.383456 TTTGTTGCTTGCGCTGTCCT 61.383 50.000 9.73 0.00 36.97 3.85
2042 3823 1.785041 TTGTTGCTTGCGCTGTCCTC 61.785 55.000 9.73 0.00 36.97 3.71
2043 3824 3.043713 TTGCTTGCGCTGTCCTCG 61.044 61.111 9.73 0.00 36.97 4.63
2046 3827 4.069232 CTTGCGCTGTCCTCGGGA 62.069 66.667 9.73 0.00 0.00 5.14
2047 3828 3.997064 CTTGCGCTGTCCTCGGGAG 62.997 68.421 9.73 0.00 29.39 4.30
2049 3830 4.070552 GCGCTGTCCTCGGGAGTT 62.071 66.667 0.00 0.00 29.39 3.01
2050 3831 2.657237 CGCTGTCCTCGGGAGTTT 59.343 61.111 0.00 0.00 29.39 2.66
2051 3832 1.004918 CGCTGTCCTCGGGAGTTTT 60.005 57.895 0.00 0.00 29.39 2.43
2085 3898 2.435586 TCCCGTCCTCGAGTCGAC 60.436 66.667 22.53 16.96 39.71 4.20
2089 3902 4.176851 GTCCTCGAGTCGACCGCC 62.177 72.222 12.09 0.76 0.00 6.13
2090 3903 4.710167 TCCTCGAGTCGACCGCCA 62.710 66.667 12.09 0.17 0.00 5.69
2091 3904 4.180946 CCTCGAGTCGACCGCCAG 62.181 72.222 12.09 9.54 0.00 4.85
2092 3905 3.125573 CTCGAGTCGACCGCCAGA 61.126 66.667 12.09 4.03 0.00 3.86
2093 3906 3.102107 CTCGAGTCGACCGCCAGAG 62.102 68.421 12.09 10.05 0.00 3.35
2254 4174 8.298854 ACCACAAATAAAAATTACCGGTACTTC 58.701 33.333 15.53 0.00 0.00 3.01
2308 5645 7.002276 TGATTCATCCAGCTGAACAATCATAT 58.998 34.615 17.39 0.00 37.93 1.78
2312 5649 3.117776 TCCAGCTGAACAATCATATGGCT 60.118 43.478 17.39 0.00 39.33 4.75
2324 5661 7.596494 ACAATCATATGGCTATTTCATTTCCG 58.404 34.615 2.13 0.00 0.00 4.30
2326 5663 8.729756 CAATCATATGGCTATTTCATTTCCGTA 58.270 33.333 2.13 0.00 0.00 4.02
2333 6052 7.309920 TGGCTATTTCATTTCCGTACTTTTTC 58.690 34.615 0.00 0.00 0.00 2.29
2370 6089 4.634349 TTCATTAGTTGAACACGTACGC 57.366 40.909 16.72 0.00 39.44 4.42
2399 6127 1.009389 CAGGCAAGACGTTCGAGACC 61.009 60.000 0.00 0.00 0.00 3.85
2534 6262 4.373116 CCCGGCTGTGTACGCACT 62.373 66.667 4.65 0.00 45.44 4.40
2566 6303 0.608130 TGATTCGGCCCATCGATAGG 59.392 55.000 5.39 5.39 39.03 2.57
2583 6320 2.586792 GCATCTTGGGCCTCGACT 59.413 61.111 4.53 0.00 0.00 4.18
2584 6321 1.522580 GCATCTTGGGCCTCGACTC 60.523 63.158 4.53 0.00 0.00 3.36
2585 6322 1.144936 CATCTTGGGCCTCGACTCC 59.855 63.158 4.53 0.00 0.00 3.85
2586 6323 1.002274 ATCTTGGGCCTCGACTCCT 59.998 57.895 4.53 0.00 0.00 3.69
2587 6324 0.618968 ATCTTGGGCCTCGACTCCTT 60.619 55.000 4.53 0.00 0.00 3.36
2588 6325 0.836400 TCTTGGGCCTCGACTCCTTT 60.836 55.000 4.53 0.00 0.00 3.11
2589 6326 0.391793 CTTGGGCCTCGACTCCTTTC 60.392 60.000 4.53 0.00 0.00 2.62
2590 6327 1.125093 TTGGGCCTCGACTCCTTTCA 61.125 55.000 4.53 0.00 0.00 2.69
2591 6328 1.125093 TGGGCCTCGACTCCTTTCAA 61.125 55.000 4.53 0.00 0.00 2.69
2592 6329 0.036306 GGGCCTCGACTCCTTTCAAA 59.964 55.000 0.84 0.00 0.00 2.69
2593 6330 1.340114 GGGCCTCGACTCCTTTCAAAT 60.340 52.381 0.84 0.00 0.00 2.32
2594 6331 1.740025 GGCCTCGACTCCTTTCAAATG 59.260 52.381 0.00 0.00 0.00 2.32
2595 6332 1.740025 GCCTCGACTCCTTTCAAATGG 59.260 52.381 0.00 0.00 0.00 3.16
2596 6333 1.740025 CCTCGACTCCTTTCAAATGGC 59.260 52.381 0.00 0.00 0.00 4.40
2597 6334 1.394917 CTCGACTCCTTTCAAATGGCG 59.605 52.381 0.00 0.00 0.00 5.69
2598 6335 0.447801 CGACTCCTTTCAAATGGCGG 59.552 55.000 0.00 0.00 0.00 6.13
2599 6336 0.811281 GACTCCTTTCAAATGGCGGG 59.189 55.000 0.00 0.00 0.00 6.13
2600 6337 0.112412 ACTCCTTTCAAATGGCGGGT 59.888 50.000 0.00 0.00 0.00 5.28
2601 6338 1.256812 CTCCTTTCAAATGGCGGGTT 58.743 50.000 0.00 0.00 0.00 4.11
2602 6339 1.202348 CTCCTTTCAAATGGCGGGTTC 59.798 52.381 0.00 0.00 0.00 3.62
2603 6340 0.109319 CCTTTCAAATGGCGGGTTCG 60.109 55.000 0.00 0.00 39.81 3.95
2604 6341 0.596082 CTTTCAAATGGCGGGTTCGT 59.404 50.000 0.00 0.00 38.89 3.85
2605 6342 1.000717 CTTTCAAATGGCGGGTTCGTT 60.001 47.619 0.00 0.00 38.89 3.85
2606 6343 1.033574 TTCAAATGGCGGGTTCGTTT 58.966 45.000 0.00 0.00 38.89 3.60
2607 6344 0.312416 TCAAATGGCGGGTTCGTTTG 59.688 50.000 0.00 0.00 40.52 2.93
2608 6345 0.031449 CAAATGGCGGGTTCGTTTGT 59.969 50.000 0.00 0.00 36.75 2.83
2609 6346 0.312729 AAATGGCGGGTTCGTTTGTC 59.687 50.000 0.00 0.00 38.89 3.18
2610 6347 0.536460 AATGGCGGGTTCGTTTGTCT 60.536 50.000 0.00 0.00 38.89 3.41
2611 6348 1.234615 ATGGCGGGTTCGTTTGTCTG 61.235 55.000 0.00 0.00 38.89 3.51
2612 6349 2.251371 GCGGGTTCGTTTGTCTGC 59.749 61.111 0.00 0.00 38.89 4.26
2613 6350 2.943653 CGGGTTCGTTTGTCTGCC 59.056 61.111 0.00 0.00 0.00 4.85
2614 6351 2.943653 GGGTTCGTTTGTCTGCCG 59.056 61.111 0.00 0.00 0.00 5.69
2615 6352 1.595929 GGGTTCGTTTGTCTGCCGA 60.596 57.895 0.00 0.00 0.00 5.54
2616 6353 0.953960 GGGTTCGTTTGTCTGCCGAT 60.954 55.000 0.00 0.00 0.00 4.18
2617 6354 1.673626 GGGTTCGTTTGTCTGCCGATA 60.674 52.381 0.00 0.00 0.00 2.92
2618 6355 2.070783 GGTTCGTTTGTCTGCCGATAA 58.929 47.619 0.00 0.00 0.00 1.75
2619 6356 2.159747 GGTTCGTTTGTCTGCCGATAAC 60.160 50.000 0.00 0.00 0.00 1.89
2620 6357 2.735134 GTTCGTTTGTCTGCCGATAACT 59.265 45.455 0.00 0.00 0.00 2.24
2621 6358 2.333926 TCGTTTGTCTGCCGATAACTG 58.666 47.619 0.00 0.00 0.00 3.16
2626 6363 3.610040 TGTCTGCCGATAACTGACAAT 57.390 42.857 0.00 0.00 41.28 2.71
2674 6411 2.903855 GGCCCGGATCATGCACAG 60.904 66.667 0.73 0.00 0.00 3.66
2748 6485 2.513897 ACGCCGGCAAGCTATTCC 60.514 61.111 28.98 0.00 0.00 3.01
3077 6814 2.433664 AACGTCGTGCCGGGATTC 60.434 61.111 2.18 0.00 0.00 2.52
3266 7003 2.860293 GACGTTGACATGGCCGTG 59.140 61.111 23.83 23.83 33.03 4.94
3275 7012 2.047274 ATGGCCGTGAACCTCGTG 60.047 61.111 0.00 0.00 0.00 4.35
3325 7065 3.876300 GGTGCTCACCGTGTCATC 58.124 61.111 2.97 0.00 42.29 2.92
3326 7066 1.293498 GGTGCTCACCGTGTCATCT 59.707 57.895 2.97 0.00 42.29 2.90
3327 7067 0.737715 GGTGCTCACCGTGTCATCTC 60.738 60.000 2.97 0.00 42.29 2.75
3328 7068 0.038251 GTGCTCACCGTGTCATCTCA 60.038 55.000 0.00 0.00 0.00 3.27
3345 7085 2.156917 CTCATCTGGCTCAAGCAACAA 58.843 47.619 4.13 0.00 44.36 2.83
3346 7086 1.881973 TCATCTGGCTCAAGCAACAAC 59.118 47.619 4.13 0.00 44.36 3.32
3364 7104 5.661056 ACAACCTCGATCAAACTCTCATA 57.339 39.130 0.00 0.00 0.00 2.15
3365 7105 5.655488 ACAACCTCGATCAAACTCTCATAG 58.345 41.667 0.00 0.00 0.00 2.23
3366 7106 5.186021 ACAACCTCGATCAAACTCTCATAGT 59.814 40.000 0.00 0.00 41.49 2.12
3367 7107 5.508200 ACCTCGATCAAACTCTCATAGTC 57.492 43.478 0.00 0.00 37.50 2.59
3373 7113 5.401972 CGATCAAACTCTCATAGTCTCATGC 59.598 44.000 0.00 0.00 37.50 4.06
3374 7114 5.665916 TCAAACTCTCATAGTCTCATGCA 57.334 39.130 0.00 0.00 37.50 3.96
3376 7116 6.047231 TCAAACTCTCATAGTCTCATGCATG 58.953 40.000 21.07 21.07 37.50 4.06
3377 7117 3.992643 ACTCTCATAGTCTCATGCATGC 58.007 45.455 22.25 11.82 30.33 4.06
3378 7118 3.387050 ACTCTCATAGTCTCATGCATGCA 59.613 43.478 25.04 25.04 30.33 3.96
3379 7119 3.725490 TCTCATAGTCTCATGCATGCAC 58.275 45.455 25.37 19.06 0.00 4.57
3423 7163 0.463204 CATCACAGGGCGAGATCTGT 59.537 55.000 0.00 0.00 44.12 3.41
3580 7320 1.064946 CGACCTGACGGCATCTCTC 59.935 63.158 0.00 0.00 0.00 3.20
3583 7323 2.025155 GACCTGACGGCATCTCTCTAA 58.975 52.381 0.00 0.00 0.00 2.10
3584 7324 2.625790 GACCTGACGGCATCTCTCTAAT 59.374 50.000 0.00 0.00 0.00 1.73
3585 7325 3.821600 GACCTGACGGCATCTCTCTAATA 59.178 47.826 0.00 0.00 0.00 0.98
3587 7327 4.835615 ACCTGACGGCATCTCTCTAATATT 59.164 41.667 0.00 0.00 0.00 1.28
3588 7328 6.010850 ACCTGACGGCATCTCTCTAATATTA 58.989 40.000 0.00 0.00 0.00 0.98
3590 7330 6.977502 CCTGACGGCATCTCTCTAATATTATG 59.022 42.308 0.00 0.00 0.00 1.90
3592 7332 7.315890 TGACGGCATCTCTCTAATATTATGTG 58.684 38.462 0.00 0.00 0.00 3.21
3593 7333 6.102663 ACGGCATCTCTCTAATATTATGTGC 58.897 40.000 0.00 1.62 0.00 4.57
3594 7334 6.071108 ACGGCATCTCTCTAATATTATGTGCT 60.071 38.462 0.00 0.00 0.00 4.40
3595 7335 6.255237 CGGCATCTCTCTAATATTATGTGCTG 59.745 42.308 0.00 2.96 0.00 4.41
3596 7336 6.036953 GGCATCTCTCTAATATTATGTGCTGC 59.963 42.308 0.00 6.75 0.00 5.25
3626 7366 5.751028 CCAGAGAAGAAGGCTCTAATTAACG 59.249 44.000 0.00 0.00 40.60 3.18
3629 7369 5.662456 AGAAGAAGGCTCTAATTAACGACC 58.338 41.667 0.00 0.00 0.00 4.79
3632 7372 4.466726 AGAAGGCTCTAATTAACGACCACT 59.533 41.667 0.00 0.00 0.00 4.00
3633 7373 4.820894 AGGCTCTAATTAACGACCACTT 57.179 40.909 0.00 0.00 0.00 3.16
3634 7374 5.161943 AGGCTCTAATTAACGACCACTTT 57.838 39.130 0.00 0.00 0.00 2.66
3635 7375 6.290294 AGGCTCTAATTAACGACCACTTTA 57.710 37.500 0.00 0.00 0.00 1.85
3639 7379 8.709646 GGCTCTAATTAACGACCACTTTATATG 58.290 37.037 0.00 0.00 0.00 1.78
3640 7380 8.221766 GCTCTAATTAACGACCACTTTATATGC 58.778 37.037 0.00 0.00 0.00 3.14
3789 7533 1.685224 GAGCCCACCATCTTCACCA 59.315 57.895 0.00 0.00 0.00 4.17
3870 7614 6.583806 GCTCATGAAATTCAAGTAGGTGTTTG 59.416 38.462 0.00 0.00 0.00 2.93
3884 7628 1.340889 GTGTTTGCATTTCCTCTGCCA 59.659 47.619 0.00 0.00 38.89 4.92
3893 7637 4.491676 CATTTCCTCTGCCAGAACATTTG 58.508 43.478 0.00 0.00 0.00 2.32
3928 7672 1.012486 GTCGACACACGGATGGAACC 61.012 60.000 11.55 0.00 42.82 3.62
3968 7712 2.729194 ACTGGGTGTGCACTGTTTTTA 58.271 42.857 19.41 0.00 0.00 1.52
4212 7961 0.033504 AGTACCTGCACACCAAGACG 59.966 55.000 0.00 0.00 0.00 4.18
4236 7985 0.240145 TCACTCCGCTCTACAACACG 59.760 55.000 0.00 0.00 0.00 4.49
4250 7999 3.129502 CACGCCCTGGCTGTGATG 61.130 66.667 20.83 2.85 43.07 3.07
4252 8001 2.360350 CGCCCTGGCTGTGATGTT 60.360 61.111 6.60 0.00 39.32 2.71
4296 8046 1.184970 ACAGGCGAAACAAATGGGGG 61.185 55.000 0.00 0.00 0.00 5.40
4373 8123 7.717875 TCCTTGTGCAGTTGTACTTATTACTTT 59.282 33.333 0.00 0.00 0.00 2.66
4374 8124 8.015658 CCTTGTGCAGTTGTACTTATTACTTTC 58.984 37.037 0.00 0.00 0.00 2.62
4377 8127 7.929245 TGTGCAGTTGTACTTATTACTTTCAGA 59.071 33.333 0.00 0.00 0.00 3.27
4378 8128 8.936864 GTGCAGTTGTACTTATTACTTTCAGAT 58.063 33.333 0.00 0.00 0.00 2.90
4379 8129 9.151471 TGCAGTTGTACTTATTACTTTCAGATC 57.849 33.333 0.00 0.00 0.00 2.75
4380 8130 8.604890 GCAGTTGTACTTATTACTTTCAGATCC 58.395 37.037 0.00 0.00 0.00 3.36
4381 8131 9.099454 CAGTTGTACTTATTACTTTCAGATCCC 57.901 37.037 0.00 0.00 0.00 3.85
4383 8133 7.743116 TGTACTTATTACTTTCAGATCCCCA 57.257 36.000 0.00 0.00 0.00 4.96
4384 8134 7.792032 TGTACTTATTACTTTCAGATCCCCAG 58.208 38.462 0.00 0.00 0.00 4.45
4385 8135 6.893020 ACTTATTACTTTCAGATCCCCAGT 57.107 37.500 0.00 0.00 0.00 4.00
4386 8136 6.890293 ACTTATTACTTTCAGATCCCCAGTC 58.110 40.000 0.00 0.00 0.00 3.51
4387 8137 4.779993 ATTACTTTCAGATCCCCAGTCC 57.220 45.455 0.00 0.00 0.00 3.85
4388 8138 2.044793 ACTTTCAGATCCCCAGTCCA 57.955 50.000 0.00 0.00 0.00 4.02
4389 8139 2.348472 ACTTTCAGATCCCCAGTCCAA 58.652 47.619 0.00 0.00 0.00 3.53
4496 8257 1.135803 CCCGCACAAACTTGATTACCG 60.136 52.381 0.00 0.00 0.00 4.02
4521 8282 9.409949 CGATAAAAGTTTATAGAAGTCGCTTTG 57.590 33.333 0.00 0.00 33.72 2.77
4529 8290 2.600731 AGAAGTCGCTTTGAGTCGATG 58.399 47.619 0.00 0.00 37.06 3.84
4545 8306 7.275183 TGAGTCGATGATCCAAAAATATGAGT 58.725 34.615 0.00 0.00 0.00 3.41
4570 8331 4.678044 GCCTCGAGTGATGAACATACTTGA 60.678 45.833 12.31 0.00 34.55 3.02
4585 8346 0.839946 CTTGAACCGGGGATGATCCT 59.160 55.000 11.87 0.00 36.57 3.24
4591 8352 1.719378 ACCGGGGATGATCCTCTAGAT 59.281 52.381 10.10 0.00 33.85 1.98
4625 8386 6.127507 TGTTGAATCACAAGAATTTCACCACA 60.128 34.615 0.00 0.00 39.30 4.17
4664 8429 5.105752 TCCAACACCAAAAAGAATCAAACG 58.894 37.500 0.00 0.00 0.00 3.60
4673 8438 8.726068 ACCAAAAAGAATCAAACGAACAAAAAT 58.274 25.926 0.00 0.00 0.00 1.82
4706 8471 8.443160 CCGCAATAACATAAATTCGTCATATCT 58.557 33.333 0.00 0.00 0.00 1.98
4747 8512 5.762179 TGACACAAACCTCTATCTCCATT 57.238 39.130 0.00 0.00 0.00 3.16
4755 8520 0.465287 TCTATCTCCATTGCAGCGCA 59.535 50.000 11.47 0.00 36.47 6.09
4810 8575 7.350921 TGAAAAATACCAAGATCCCCTCTAGAT 59.649 37.037 0.00 0.00 32.41 1.98
4812 8577 8.814448 AAAATACCAAGATCCCCTCTAGATAA 57.186 34.615 0.00 0.00 32.41 1.75
4875 8643 0.179089 CTCAGCGCTTAGATGCCAGT 60.179 55.000 13.43 0.00 35.94 4.00
4891 8660 1.000646 AGTCAGAGACGAGGGGACC 60.001 63.158 0.00 0.00 43.72 4.46
4914 8683 1.645402 GGGGGAGCTCCTATTTGGCA 61.645 60.000 31.36 0.00 35.95 4.92
4945 8714 3.483235 AAAACCAGCCAACGCGCAG 62.483 57.895 5.73 2.42 41.18 5.18
5020 8790 4.676986 GCCCCCTGATTTTTCATTTCGTAC 60.677 45.833 0.00 0.00 0.00 3.67
5027 8797 8.237267 CCTGATTTTTCATTTCGTACTTTAGCT 58.763 33.333 0.00 0.00 0.00 3.32
5056 9298 9.500864 TTTGTTCTTTCTTTGCATTTTTATTGC 57.499 25.926 0.00 0.00 40.55 3.56
5239 10235 6.509317 TCGTGAATTTCAGAAAATGTTTGC 57.491 33.333 0.00 0.00 35.27 3.68
5243 10239 6.205270 GTGAATTTCAGAAAATGTTTGCCCAT 59.795 34.615 0.00 0.00 35.27 4.00
5245 10241 6.563222 ATTTCAGAAAATGTTTGCCCATTG 57.437 33.333 0.00 0.00 35.30 2.82
5247 10243 5.287674 TCAGAAAATGTTTGCCCATTGAA 57.712 34.783 0.00 0.00 35.30 2.69
5248 10244 5.678583 TCAGAAAATGTTTGCCCATTGAAA 58.321 33.333 0.00 0.00 35.30 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.319972 GTCCCACCTCGCTGTAATACATA 59.680 47.826 0.00 0.00 0.00 2.29
1 2 2.102588 GTCCCACCTCGCTGTAATACAT 59.897 50.000 0.00 0.00 0.00 2.29
2 3 1.479323 GTCCCACCTCGCTGTAATACA 59.521 52.381 0.00 0.00 0.00 2.29
3 4 1.755380 AGTCCCACCTCGCTGTAATAC 59.245 52.381 0.00 0.00 0.00 1.89
4 5 2.154567 AGTCCCACCTCGCTGTAATA 57.845 50.000 0.00 0.00 0.00 0.98
5 6 1.755380 GTAGTCCCACCTCGCTGTAAT 59.245 52.381 0.00 0.00 0.00 1.89
6 7 1.180029 GTAGTCCCACCTCGCTGTAA 58.820 55.000 0.00 0.00 0.00 2.41
7 8 0.330604 AGTAGTCCCACCTCGCTGTA 59.669 55.000 0.00 0.00 0.00 2.74
8 9 0.330604 TAGTAGTCCCACCTCGCTGT 59.669 55.000 0.00 0.00 0.00 4.40
9 10 1.471119 TTAGTAGTCCCACCTCGCTG 58.529 55.000 0.00 0.00 0.00 5.18
10 11 2.456073 ATTAGTAGTCCCACCTCGCT 57.544 50.000 0.00 0.00 0.00 4.93
11 12 2.429610 TGAATTAGTAGTCCCACCTCGC 59.570 50.000 0.00 0.00 0.00 5.03
12 13 4.730949 TTGAATTAGTAGTCCCACCTCG 57.269 45.455 0.00 0.00 0.00 4.63
13 14 5.429130 CCTTTGAATTAGTAGTCCCACCTC 58.571 45.833 0.00 0.00 0.00 3.85
14 15 4.324331 GCCTTTGAATTAGTAGTCCCACCT 60.324 45.833 0.00 0.00 0.00 4.00
15 16 3.945921 GCCTTTGAATTAGTAGTCCCACC 59.054 47.826 0.00 0.00 0.00 4.61
16 17 3.621715 CGCCTTTGAATTAGTAGTCCCAC 59.378 47.826 0.00 0.00 0.00 4.61
17 18 3.516300 TCGCCTTTGAATTAGTAGTCCCA 59.484 43.478 0.00 0.00 0.00 4.37
18 19 4.133013 TCGCCTTTGAATTAGTAGTCCC 57.867 45.455 0.00 0.00 0.00 4.46
19 20 4.331992 GGTTCGCCTTTGAATTAGTAGTCC 59.668 45.833 0.00 0.00 0.00 3.85
20 21 4.331992 GGGTTCGCCTTTGAATTAGTAGTC 59.668 45.833 0.00 0.00 37.45 2.59
21 22 4.019591 AGGGTTCGCCTTTGAATTAGTAGT 60.020 41.667 0.00 0.00 37.45 2.73
22 23 4.514401 AGGGTTCGCCTTTGAATTAGTAG 58.486 43.478 0.00 0.00 37.45 2.57
23 24 4.224370 AGAGGGTTCGCCTTTGAATTAGTA 59.776 41.667 0.00 0.00 37.45 1.82
24 25 3.009143 AGAGGGTTCGCCTTTGAATTAGT 59.991 43.478 0.00 0.00 37.45 2.24
25 26 3.610911 AGAGGGTTCGCCTTTGAATTAG 58.389 45.455 0.00 0.00 37.45 1.73
26 27 3.713826 AGAGGGTTCGCCTTTGAATTA 57.286 42.857 0.00 0.00 37.45 1.40
27 28 2.586648 AGAGGGTTCGCCTTTGAATT 57.413 45.000 0.00 0.00 37.45 2.17
28 29 2.586648 AAGAGGGTTCGCCTTTGAAT 57.413 45.000 0.00 0.00 37.45 2.57
29 30 2.358322 AAAGAGGGTTCGCCTTTGAA 57.642 45.000 0.00 0.00 37.45 2.69
30 31 1.953686 CAAAAGAGGGTTCGCCTTTGA 59.046 47.619 0.00 0.00 37.45 2.69
31 32 1.681264 ACAAAAGAGGGTTCGCCTTTG 59.319 47.619 0.00 0.00 37.45 2.77
32 33 2.067365 ACAAAAGAGGGTTCGCCTTT 57.933 45.000 0.00 0.00 37.45 3.11
33 34 2.943036 TACAAAAGAGGGTTCGCCTT 57.057 45.000 0.00 0.00 37.45 4.35
34 35 2.943036 TTACAAAAGAGGGTTCGCCT 57.057 45.000 0.00 0.00 37.45 5.52
35 36 4.510571 TCTATTACAAAAGAGGGTTCGCC 58.489 43.478 0.00 0.00 0.00 5.54
36 37 5.447413 GCTTCTATTACAAAAGAGGGTTCGC 60.447 44.000 0.00 0.00 0.00 4.70
37 38 5.642063 TGCTTCTATTACAAAAGAGGGTTCG 59.358 40.000 0.00 0.00 0.00 3.95
38 39 7.448748 TTGCTTCTATTACAAAAGAGGGTTC 57.551 36.000 0.00 0.00 0.00 3.62
39 40 7.833285 TTTGCTTCTATTACAAAAGAGGGTT 57.167 32.000 0.00 0.00 30.75 4.11
40 41 7.833285 TTTTGCTTCTATTACAAAAGAGGGT 57.167 32.000 0.00 0.00 38.11 4.34
59 60 0.166814 CCAGCACGACTAGCTTTTGC 59.833 55.000 0.00 0.00 41.14 3.68
60 61 1.512926 ACCAGCACGACTAGCTTTTG 58.487 50.000 0.00 0.00 41.14 2.44
61 62 1.873591 CAACCAGCACGACTAGCTTTT 59.126 47.619 0.00 0.00 41.14 2.27
62 63 1.512926 CAACCAGCACGACTAGCTTT 58.487 50.000 0.00 0.00 41.14 3.51
63 64 0.951040 GCAACCAGCACGACTAGCTT 60.951 55.000 0.00 0.00 44.79 3.74
64 65 1.374758 GCAACCAGCACGACTAGCT 60.375 57.895 0.00 0.00 44.79 3.32
65 66 3.169198 GCAACCAGCACGACTAGC 58.831 61.111 0.00 0.00 44.79 3.42
81 82 1.176527 TTATTGCTCCTGCTGGTTGC 58.823 50.000 17.94 17.94 40.48 4.17
82 83 3.181483 GGAATTATTGCTCCTGCTGGTTG 60.181 47.826 9.73 5.40 40.48 3.77
83 84 3.026694 GGAATTATTGCTCCTGCTGGTT 58.973 45.455 9.73 0.00 40.48 3.67
84 85 2.025037 TGGAATTATTGCTCCTGCTGGT 60.025 45.455 9.73 0.00 40.48 4.00
85 86 2.360165 GTGGAATTATTGCTCCTGCTGG 59.640 50.000 2.58 2.58 40.48 4.85
86 87 2.360165 GGTGGAATTATTGCTCCTGCTG 59.640 50.000 9.72 0.00 40.48 4.41
87 88 2.243221 AGGTGGAATTATTGCTCCTGCT 59.757 45.455 17.03 0.00 42.32 4.24
88 89 2.620585 GAGGTGGAATTATTGCTCCTGC 59.379 50.000 21.42 11.24 43.64 4.85
89 90 3.217626 GGAGGTGGAATTATTGCTCCTG 58.782 50.000 21.42 0.00 43.64 3.86
90 91 2.175715 GGGAGGTGGAATTATTGCTCCT 59.824 50.000 17.60 17.60 45.79 3.69
91 92 2.175715 AGGGAGGTGGAATTATTGCTCC 59.824 50.000 9.09 9.09 35.23 4.70
92 93 3.217626 CAGGGAGGTGGAATTATTGCTC 58.782 50.000 0.00 0.00 0.00 4.26
93 94 2.687914 GCAGGGAGGTGGAATTATTGCT 60.688 50.000 0.00 0.00 0.00 3.91
94 95 1.683385 GCAGGGAGGTGGAATTATTGC 59.317 52.381 0.00 0.00 0.00 3.56
95 96 3.017048 TGCAGGGAGGTGGAATTATTG 57.983 47.619 0.00 0.00 0.00 1.90
96 97 3.979501 ATGCAGGGAGGTGGAATTATT 57.020 42.857 0.00 0.00 0.00 1.40
97 98 3.979501 AATGCAGGGAGGTGGAATTAT 57.020 42.857 0.00 0.00 0.00 1.28
98 99 3.785887 ACTAATGCAGGGAGGTGGAATTA 59.214 43.478 0.00 0.00 0.00 1.40
99 100 2.582636 ACTAATGCAGGGAGGTGGAATT 59.417 45.455 0.00 0.00 0.00 2.17
100 101 2.208872 ACTAATGCAGGGAGGTGGAAT 58.791 47.619 0.00 0.00 0.00 3.01
101 102 1.668826 ACTAATGCAGGGAGGTGGAA 58.331 50.000 0.00 0.00 0.00 3.53
102 103 1.281867 CAACTAATGCAGGGAGGTGGA 59.718 52.381 0.00 0.00 0.00 4.02
103 104 1.683011 CCAACTAATGCAGGGAGGTGG 60.683 57.143 13.31 13.31 41.52 4.61
104 105 1.004745 ACCAACTAATGCAGGGAGGTG 59.995 52.381 3.85 3.85 0.00 4.00
105 106 1.372501 ACCAACTAATGCAGGGAGGT 58.627 50.000 0.00 0.00 0.00 3.85
106 107 3.864789 ATACCAACTAATGCAGGGAGG 57.135 47.619 0.00 0.00 0.00 4.30
107 108 5.070446 TCTGTATACCAACTAATGCAGGGAG 59.930 44.000 0.00 0.00 36.72 4.30
108 109 4.966168 TCTGTATACCAACTAATGCAGGGA 59.034 41.667 0.00 0.00 36.72 4.20
109 110 5.290493 TCTGTATACCAACTAATGCAGGG 57.710 43.478 0.00 0.00 36.72 4.45
110 111 7.441836 TGTATCTGTATACCAACTAATGCAGG 58.558 38.462 0.00 0.00 37.72 4.85
111 112 8.887036 TTGTATCTGTATACCAACTAATGCAG 57.113 34.615 0.00 0.00 37.72 4.41
112 113 8.482943 ACTTGTATCTGTATACCAACTAATGCA 58.517 33.333 0.00 0.00 37.72 3.96
113 114 8.888579 ACTTGTATCTGTATACCAACTAATGC 57.111 34.615 0.00 0.00 37.72 3.56
170 171 9.582874 AGGGAGGTATCTCTATCTCTATTTCTA 57.417 37.037 2.34 0.00 33.10 2.10
171 172 8.336235 CAGGGAGGTATCTCTATCTCTATTTCT 58.664 40.741 2.34 0.00 32.21 2.52
172 173 7.068226 GCAGGGAGGTATCTCTATCTCTATTTC 59.932 44.444 2.34 0.00 32.21 2.17
173 174 6.895204 GCAGGGAGGTATCTCTATCTCTATTT 59.105 42.308 2.34 0.00 32.21 1.40
174 175 6.011185 TGCAGGGAGGTATCTCTATCTCTATT 60.011 42.308 2.34 0.00 32.21 1.73
175 176 5.494341 TGCAGGGAGGTATCTCTATCTCTAT 59.506 44.000 2.34 0.00 32.21 1.98
176 177 4.852697 TGCAGGGAGGTATCTCTATCTCTA 59.147 45.833 2.34 0.00 32.21 2.43
177 178 3.660177 TGCAGGGAGGTATCTCTATCTCT 59.340 47.826 2.34 0.00 32.21 3.10
178 179 4.040936 TGCAGGGAGGTATCTCTATCTC 57.959 50.000 2.34 0.00 32.21 2.75
179 180 4.690767 ATGCAGGGAGGTATCTCTATCT 57.309 45.455 2.34 0.00 32.21 1.98
180 181 5.955355 ACTAATGCAGGGAGGTATCTCTATC 59.045 44.000 2.34 0.00 32.21 2.08
181 182 5.909760 ACTAATGCAGGGAGGTATCTCTAT 58.090 41.667 2.34 0.00 32.21 1.98
182 183 5.340891 ACTAATGCAGGGAGGTATCTCTA 57.659 43.478 2.34 0.00 32.21 2.43
183 184 4.206244 ACTAATGCAGGGAGGTATCTCT 57.794 45.455 2.34 0.00 36.35 3.10
184 185 4.636249 CAACTAATGCAGGGAGGTATCTC 58.364 47.826 0.00 0.00 39.25 2.75
185 186 4.696479 CAACTAATGCAGGGAGGTATCT 57.304 45.455 0.00 0.00 0.00 1.98
253 254 9.582874 AGGGAGGTATCTCTATCTCTATCTTTA 57.417 37.037 2.34 0.00 33.10 1.85
254 255 8.336235 CAGGGAGGTATCTCTATCTCTATCTTT 58.664 40.741 2.34 0.00 32.21 2.52
255 256 7.585387 GCAGGGAGGTATCTCTATCTCTATCTT 60.585 44.444 2.34 0.00 32.21 2.40
256 257 6.126478 GCAGGGAGGTATCTCTATCTCTATCT 60.126 46.154 2.34 0.00 32.21 1.98
257 258 6.062095 GCAGGGAGGTATCTCTATCTCTATC 58.938 48.000 2.34 0.00 32.21 2.08
258 259 5.494341 TGCAGGGAGGTATCTCTATCTCTAT 59.506 44.000 2.34 0.00 32.21 1.98
259 260 4.852697 TGCAGGGAGGTATCTCTATCTCTA 59.147 45.833 2.34 0.00 32.21 2.43
260 261 3.660177 TGCAGGGAGGTATCTCTATCTCT 59.340 47.826 2.34 0.00 32.21 3.10
261 262 4.040936 TGCAGGGAGGTATCTCTATCTC 57.959 50.000 2.34 0.00 32.21 2.75
262 263 4.690767 ATGCAGGGAGGTATCTCTATCT 57.309 45.455 2.34 0.00 32.21 1.98
263 264 5.955355 ACTAATGCAGGGAGGTATCTCTATC 59.045 44.000 2.34 0.00 32.21 2.08
264 265 5.909760 ACTAATGCAGGGAGGTATCTCTAT 58.090 41.667 2.34 0.00 32.21 1.98
265 266 5.340891 ACTAATGCAGGGAGGTATCTCTA 57.659 43.478 2.34 0.00 32.21 2.43
266 267 4.206244 ACTAATGCAGGGAGGTATCTCT 57.794 45.455 2.34 0.00 36.35 3.10
267 268 4.345257 TCAACTAATGCAGGGAGGTATCTC 59.655 45.833 0.00 0.00 39.25 2.75
268 269 4.298626 TCAACTAATGCAGGGAGGTATCT 58.701 43.478 0.00 0.00 0.00 1.98
269 270 4.689612 TCAACTAATGCAGGGAGGTATC 57.310 45.455 0.00 0.00 0.00 2.24
270 271 6.959606 ATATCAACTAATGCAGGGAGGTAT 57.040 37.500 0.00 0.00 0.00 2.73
271 272 7.246027 TCTATATCAACTAATGCAGGGAGGTA 58.754 38.462 0.00 0.00 0.00 3.08
272 273 6.084738 TCTATATCAACTAATGCAGGGAGGT 58.915 40.000 0.00 0.00 0.00 3.85
273 274 6.611613 TCTATATCAACTAATGCAGGGAGG 57.388 41.667 0.00 0.00 0.00 4.30
397 398 7.256154 GGGGTGATGAAAAGAAAGGTAAAATGA 60.256 37.037 0.00 0.00 0.00 2.57
403 404 5.321927 GAAGGGGTGATGAAAAGAAAGGTA 58.678 41.667 0.00 0.00 0.00 3.08
417 418 1.057851 AAGGTTGGACGAAGGGGTGA 61.058 55.000 0.00 0.00 0.00 4.02
423 424 2.256117 ACAAGGAAGGTTGGACGAAG 57.744 50.000 0.00 0.00 0.00 3.79
586 2235 7.134815 TCTAATACGTTAGCTCGTGATTTACC 58.865 38.462 10.46 0.00 43.93 2.85
625 2274 1.370414 AATGCTCGTGCGTTGCAAC 60.370 52.632 19.89 19.89 45.65 4.17
638 2287 8.240682 CGCTTCTATATCTACTAGAACAATGCT 58.759 37.037 0.00 0.00 33.00 3.79
676 2326 4.537135 TCTTGTAGGCTCTCACGAAAAT 57.463 40.909 0.00 0.00 0.00 1.82
706 2356 5.906113 ATGGCGTGTTTGGTTAATAATCA 57.094 34.783 0.00 0.00 0.00 2.57
710 2360 8.283992 CGATTATAATGGCGTGTTTGGTTAATA 58.716 33.333 1.78 0.00 0.00 0.98
712 2362 6.093771 ACGATTATAATGGCGTGTTTGGTTAA 59.906 34.615 10.43 0.00 35.44 2.01
713 2363 5.585445 ACGATTATAATGGCGTGTTTGGTTA 59.415 36.000 10.43 0.00 35.44 2.85
714 2364 4.396790 ACGATTATAATGGCGTGTTTGGTT 59.603 37.500 10.43 0.00 35.44 3.67
715 2365 3.942748 ACGATTATAATGGCGTGTTTGGT 59.057 39.130 10.43 0.00 35.44 3.67
716 2366 4.278858 CACGATTATAATGGCGTGTTTGG 58.721 43.478 22.26 5.88 46.28 3.28
722 2372 8.821147 TCTTTATTACACGATTATAATGGCGT 57.179 30.769 1.78 4.57 37.48 5.68
723 2373 9.135843 TCTCTTTATTACACGATTATAATGGCG 57.864 33.333 1.78 3.91 0.00 5.69
743 2405 6.836527 TCTCCTCGAATTATCCTCTTCTCTTT 59.163 38.462 0.00 0.00 0.00 2.52
794 2456 1.034838 TCTGGGTGTGTTTGTGTGCC 61.035 55.000 0.00 0.00 0.00 5.01
796 2458 1.670811 GACTCTGGGTGTGTTTGTGTG 59.329 52.381 0.00 0.00 0.00 3.82
859 2554 1.554583 GGAGGGTGAGTGGAGGGAAC 61.555 65.000 0.00 0.00 0.00 3.62
868 2563 0.103876 AGAAAAGGGGGAGGGTGAGT 60.104 55.000 0.00 0.00 0.00 3.41
876 2571 4.202172 CGTTTTAAAGCAAGAAAAGGGGGA 60.202 41.667 2.86 0.00 30.51 4.81
915 2612 1.227292 TGTTTGTGTGCGCTACGGA 60.227 52.632 9.73 0.00 0.00 4.69
1029 2735 2.525629 TCCAGTTCCGGCACCTCA 60.526 61.111 0.00 0.00 0.00 3.86
1156 2863 2.282040 GGTGCTGCTGCTGGACTT 60.282 61.111 25.13 0.00 40.48 3.01
1196 2909 2.821688 CGCGTCTCTCCCCTACGAC 61.822 68.421 0.00 0.00 38.89 4.34
1199 2912 0.100861 CTTTCGCGTCTCTCCCCTAC 59.899 60.000 5.77 0.00 0.00 3.18
1209 2922 3.660777 GCTAACAGAATTCTTTCGCGTC 58.339 45.455 4.86 0.00 36.93 5.19
1317 3030 3.900892 CGACCACGGAGGGGATCG 61.901 72.222 0.00 0.00 43.89 3.69
1322 3035 3.528370 CTAGGCGACCACGGAGGG 61.528 72.222 1.11 0.00 43.89 4.30
1325 3038 1.451567 CTCTCTAGGCGACCACGGA 60.452 63.158 0.00 0.00 40.15 4.69
1328 3041 1.134340 TCTCTCTCTCTAGGCGACCAC 60.134 57.143 0.00 0.00 0.00 4.16
1329 3042 1.140052 CTCTCTCTCTCTAGGCGACCA 59.860 57.143 0.00 0.00 0.00 4.02
1330 3043 1.414919 TCTCTCTCTCTCTAGGCGACC 59.585 57.143 0.00 0.00 0.00 4.79
1331 3044 2.364324 TCTCTCTCTCTCTCTAGGCGAC 59.636 54.545 0.00 0.00 0.00 5.19
1332 3045 2.673258 TCTCTCTCTCTCTCTAGGCGA 58.327 52.381 0.00 0.00 0.00 5.54
1333 3046 3.006859 TCATCTCTCTCTCTCTCTAGGCG 59.993 52.174 0.00 0.00 0.00 5.52
1334 3047 4.564406 CCTCATCTCTCTCTCTCTCTAGGC 60.564 54.167 0.00 0.00 0.00 3.93
1335 3048 4.019860 CCCTCATCTCTCTCTCTCTCTAGG 60.020 54.167 0.00 0.00 0.00 3.02
1336 3049 4.594920 ACCCTCATCTCTCTCTCTCTCTAG 59.405 50.000 0.00 0.00 0.00 2.43
1337 3050 4.566837 ACCCTCATCTCTCTCTCTCTCTA 58.433 47.826 0.00 0.00 0.00 2.43
1338 3051 3.397527 ACCCTCATCTCTCTCTCTCTCT 58.602 50.000 0.00 0.00 0.00 3.10
1339 3052 3.864789 ACCCTCATCTCTCTCTCTCTC 57.135 52.381 0.00 0.00 0.00 3.20
1340 3053 4.141251 GGTAACCCTCATCTCTCTCTCTCT 60.141 50.000 0.00 0.00 0.00 3.10
1341 3054 4.142038 GGTAACCCTCATCTCTCTCTCTC 58.858 52.174 0.00 0.00 0.00 3.20
1342 3055 4.178956 GGTAACCCTCATCTCTCTCTCT 57.821 50.000 0.00 0.00 0.00 3.10
1372 3085 1.665916 CCATCTAGCGCCGATGTGG 60.666 63.158 26.07 15.78 37.22 4.17
1374 3087 0.314302 GTACCATCTAGCGCCGATGT 59.686 55.000 26.07 19.11 37.22 3.06
1377 3090 1.152819 AGGTACCATCTAGCGCCGA 60.153 57.895 15.94 0.39 0.00 5.54
1425 3138 4.758251 CATGTCGGACGCCCAGCA 62.758 66.667 3.34 0.00 0.00 4.41
1434 3147 2.184322 GCGCTTCTCCATGTCGGA 59.816 61.111 0.00 0.00 43.61 4.55
1436 3149 2.202610 TCGCGCTTCTCCATGTCG 60.203 61.111 5.56 0.00 0.00 4.35
1437 3150 1.880340 CCTCGCGCTTCTCCATGTC 60.880 63.158 5.56 0.00 0.00 3.06
1438 3151 2.185350 CCTCGCGCTTCTCCATGT 59.815 61.111 5.56 0.00 0.00 3.21
1439 3152 3.267860 GCCTCGCGCTTCTCCATG 61.268 66.667 5.56 0.00 0.00 3.66
1440 3153 3.729965 CTGCCTCGCGCTTCTCCAT 62.730 63.158 5.56 0.00 38.78 3.41
1441 3154 4.441695 CTGCCTCGCGCTTCTCCA 62.442 66.667 5.56 0.00 38.78 3.86
1442 3155 4.135153 TCTGCCTCGCGCTTCTCC 62.135 66.667 5.56 0.00 38.78 3.71
1443 3156 2.581953 CTCTGCCTCGCGCTTCTC 60.582 66.667 5.56 0.00 38.78 2.87
1444 3157 4.140599 CCTCTGCCTCGCGCTTCT 62.141 66.667 5.56 0.00 38.78 2.85
1445 3158 4.135153 TCCTCTGCCTCGCGCTTC 62.135 66.667 5.56 0.00 38.78 3.86
1446 3159 4.140599 CTCCTCTGCCTCGCGCTT 62.141 66.667 5.56 0.00 38.78 4.68
1466 3179 4.253257 CGCTCCTCTACGCGGGTC 62.253 72.222 12.47 0.00 45.17 4.46
1506 3234 4.271816 CGCGCTCGCACTCCCTAT 62.272 66.667 14.80 0.00 42.06 2.57
1567 3295 1.898459 CTCACGCAAGCAGCAGACAG 61.898 60.000 0.00 0.00 46.13 3.51
1570 3298 0.532115 TATCTCACGCAAGCAGCAGA 59.468 50.000 0.00 0.00 46.13 4.26
1571 3299 0.649475 GTATCTCACGCAAGCAGCAG 59.351 55.000 0.00 0.00 46.13 4.24
1572 3300 0.247460 AGTATCTCACGCAAGCAGCA 59.753 50.000 0.00 0.00 46.13 4.41
1573 3301 0.649475 CAGTATCTCACGCAAGCAGC 59.351 55.000 0.00 0.00 45.62 5.25
1574 3302 2.159324 TCTCAGTATCTCACGCAAGCAG 60.159 50.000 0.00 0.00 45.62 4.24
1603 3345 2.159014 GCTACCTCTCTCTCGTCTCTCA 60.159 54.545 0.00 0.00 0.00 3.27
1625 3367 1.226773 GTCATTGCCATGCGCTTCC 60.227 57.895 9.73 0.00 38.78 3.46
1627 3369 2.039974 TCGTCATTGCCATGCGCTT 61.040 52.632 9.73 0.00 38.78 4.68
1628 3370 2.436469 TCGTCATTGCCATGCGCT 60.436 55.556 9.73 0.00 38.78 5.92
1713 3459 2.849120 AAGATCTGCGCTGCGAGCTT 62.849 55.000 28.07 16.27 39.60 3.74
1725 3471 5.269505 ACCTATTCGTCCAAGAAGATCTG 57.730 43.478 0.00 0.00 33.19 2.90
1739 3485 2.781973 GCGCACGTGTTTTACCTATTCG 60.782 50.000 18.38 8.34 0.00 3.34
1741 3487 1.465777 GGCGCACGTGTTTTACCTATT 59.534 47.619 18.38 0.00 0.00 1.73
1825 3579 3.663176 CGTGTGTGCCTGCCTTGG 61.663 66.667 0.00 0.00 0.00 3.61
1826 3580 1.596752 TACGTGTGTGCCTGCCTTG 60.597 57.895 0.00 0.00 0.00 3.61
1827 3581 1.597027 GTACGTGTGTGCCTGCCTT 60.597 57.895 0.00 0.00 0.00 4.35
1831 3606 2.657757 CGCTGTACGTGTGTGCCTG 61.658 63.158 0.00 0.00 36.87 4.85
1866 3641 6.636562 AGTTGATCGTATACTAGTCCTTGG 57.363 41.667 0.00 0.00 0.00 3.61
1868 3643 7.876936 TCAAGTTGATCGTATACTAGTCCTT 57.123 36.000 0.00 0.00 0.00 3.36
1871 3646 9.315680 CGTAATCAAGTTGATCGTATACTAGTC 57.684 37.037 18.52 0.00 35.76 2.59
1873 3648 9.315680 GTCGTAATCAAGTTGATCGTATACTAG 57.684 37.037 18.52 6.45 35.76 2.57
1875 3650 7.700505 TGTCGTAATCAAGTTGATCGTATACT 58.299 34.615 18.52 4.19 35.76 2.12
1876 3651 7.854422 TCTGTCGTAATCAAGTTGATCGTATAC 59.146 37.037 18.52 14.97 35.76 1.47
1877 3652 7.922837 TCTGTCGTAATCAAGTTGATCGTATA 58.077 34.615 18.52 4.98 35.76 1.47
1878 3653 6.792326 TCTGTCGTAATCAAGTTGATCGTAT 58.208 36.000 18.52 5.96 35.76 3.06
1879 3654 6.185852 TCTGTCGTAATCAAGTTGATCGTA 57.814 37.500 18.52 6.04 35.76 3.43
1880 3655 5.055642 TCTGTCGTAATCAAGTTGATCGT 57.944 39.130 18.52 7.03 35.76 3.73
1881 3656 5.051441 CCATCTGTCGTAATCAAGTTGATCG 60.051 44.000 18.52 17.51 35.76 3.69
1889 3664 2.536365 GCGTCCATCTGTCGTAATCAA 58.464 47.619 0.00 0.00 0.00 2.57
1890 3665 1.202371 GGCGTCCATCTGTCGTAATCA 60.202 52.381 0.00 0.00 0.00 2.57
1915 3690 1.611977 ACGCTCGATTATCCCGAATCA 59.388 47.619 0.00 0.00 35.86 2.57
1916 3691 1.986378 CACGCTCGATTATCCCGAATC 59.014 52.381 0.00 0.00 35.48 2.52
1946 3723 1.797025 GCATGGGGATAGTTACTCGC 58.203 55.000 0.00 0.00 0.00 5.03
1983 3760 5.757320 CAGAAGAGAAATTGGCGACATCTAT 59.243 40.000 0.00 0.00 42.32 1.98
1984 3761 5.111989 CAGAAGAGAAATTGGCGACATCTA 58.888 41.667 0.00 0.00 42.32 1.98
1986 3763 3.486542 GCAGAAGAGAAATTGGCGACATC 60.487 47.826 0.00 0.00 42.32 3.06
2029 3810 3.997064 CTCCCGAGGACAGCGCAAG 62.997 68.421 11.47 3.78 43.44 4.01
2030 3811 4.069232 CTCCCGAGGACAGCGCAA 62.069 66.667 11.47 0.00 0.00 4.85
2032 3813 3.591254 AAACTCCCGAGGACAGCGC 62.591 63.158 0.00 0.00 0.00 5.92
2033 3814 0.602905 AAAAACTCCCGAGGACAGCG 60.603 55.000 0.00 0.00 0.00 5.18
2034 3815 3.324207 AAAAACTCCCGAGGACAGC 57.676 52.632 0.00 0.00 0.00 4.40
2085 3898 1.523758 ACAAAAAGCTACTCTGGCGG 58.476 50.000 0.00 0.00 34.52 6.13
2089 3902 6.560253 ACATGGTTACAAAAAGCTACTCTG 57.440 37.500 0.00 0.00 0.00 3.35
2090 3903 6.546034 ACAACATGGTTACAAAAAGCTACTCT 59.454 34.615 0.00 0.00 0.00 3.24
2091 3904 6.735130 ACAACATGGTTACAAAAAGCTACTC 58.265 36.000 0.00 0.00 0.00 2.59
2092 3905 6.709018 ACAACATGGTTACAAAAAGCTACT 57.291 33.333 0.00 0.00 0.00 2.57
2093 3906 6.292114 GCAACAACATGGTTACAAAAAGCTAC 60.292 38.462 0.00 0.00 0.00 3.58
2254 4174 0.524816 CGTCGTTATCAGTCGGGTGG 60.525 60.000 0.00 0.00 0.00 4.61
2308 5645 6.827586 AAAAGTACGGAAATGAAATAGCCA 57.172 33.333 0.00 0.00 0.00 4.75
2312 5649 9.887406 GTCAAGAAAAAGTACGGAAATGAAATA 57.113 29.630 0.00 0.00 0.00 1.40
2370 6089 3.198068 ACGTCTTGCCTGTATGCATAAG 58.802 45.455 8.28 8.24 41.70 1.73
2431 6159 1.379977 TTGTCTCCCTCGGCGATCT 60.380 57.895 11.27 0.00 0.00 2.75
2531 6259 6.422223 GCCGAATCATATTGAGTTTACAGTG 58.578 40.000 0.00 0.00 0.00 3.66
2534 6262 4.819630 GGGCCGAATCATATTGAGTTTACA 59.180 41.667 0.00 0.00 0.00 2.41
2566 6303 1.522580 GAGTCGAGGCCCAAGATGC 60.523 63.158 0.00 0.00 0.00 3.91
2567 6304 1.144936 GGAGTCGAGGCCCAAGATG 59.855 63.158 0.00 0.00 0.00 2.90
2570 6307 0.391793 GAAAGGAGTCGAGGCCCAAG 60.392 60.000 0.00 0.00 0.00 3.61
2579 6316 0.447801 CCGCCATTTGAAAGGAGTCG 59.552 55.000 0.00 0.00 0.00 4.18
2580 6317 0.811281 CCCGCCATTTGAAAGGAGTC 59.189 55.000 0.00 0.00 0.00 3.36
2582 6319 1.202348 GAACCCGCCATTTGAAAGGAG 59.798 52.381 0.00 0.00 0.00 3.69
2583 6320 1.253100 GAACCCGCCATTTGAAAGGA 58.747 50.000 0.00 0.00 0.00 3.36
2584 6321 0.109319 CGAACCCGCCATTTGAAAGG 60.109 55.000 0.00 0.00 0.00 3.11
2585 6322 0.596082 ACGAACCCGCCATTTGAAAG 59.404 50.000 0.00 0.00 39.95 2.62
2586 6323 1.033574 AACGAACCCGCCATTTGAAA 58.966 45.000 0.00 0.00 39.95 2.69
2587 6324 1.033574 AAACGAACCCGCCATTTGAA 58.966 45.000 0.00 0.00 39.95 2.69
2588 6325 0.312416 CAAACGAACCCGCCATTTGA 59.688 50.000 0.00 0.00 39.95 2.69
2589 6326 0.031449 ACAAACGAACCCGCCATTTG 59.969 50.000 0.00 0.00 39.95 2.32
2590 6327 0.312729 GACAAACGAACCCGCCATTT 59.687 50.000 0.00 0.00 39.95 2.32
2591 6328 0.536460 AGACAAACGAACCCGCCATT 60.536 50.000 0.00 0.00 39.95 3.16
2592 6329 1.072505 AGACAAACGAACCCGCCAT 59.927 52.632 0.00 0.00 39.95 4.40
2593 6330 1.890041 CAGACAAACGAACCCGCCA 60.890 57.895 0.00 0.00 39.95 5.69
2594 6331 2.943653 CAGACAAACGAACCCGCC 59.056 61.111 0.00 0.00 39.95 6.13
2595 6332 2.251371 GCAGACAAACGAACCCGC 59.749 61.111 0.00 0.00 39.95 6.13
2596 6333 2.943653 GGCAGACAAACGAACCCG 59.056 61.111 0.00 0.00 42.50 5.28
2597 6334 0.953960 ATCGGCAGACAAACGAACCC 60.954 55.000 0.00 0.00 40.27 4.11
2598 6335 1.717194 TATCGGCAGACAAACGAACC 58.283 50.000 0.00 0.00 40.27 3.62
2599 6336 2.735134 AGTTATCGGCAGACAAACGAAC 59.265 45.455 7.82 0.00 40.27 3.95
2600 6337 2.734606 CAGTTATCGGCAGACAAACGAA 59.265 45.455 7.82 0.00 40.27 3.85
2601 6338 2.029739 TCAGTTATCGGCAGACAAACGA 60.030 45.455 7.82 0.00 41.20 3.85
2602 6339 2.092211 GTCAGTTATCGGCAGACAAACG 59.908 50.000 7.82 4.76 33.34 3.60
2603 6340 3.064207 TGTCAGTTATCGGCAGACAAAC 58.936 45.455 5.98 5.98 36.39 2.93
2604 6341 3.394674 TGTCAGTTATCGGCAGACAAA 57.605 42.857 0.00 0.00 36.39 2.83
2605 6342 3.394674 TTGTCAGTTATCGGCAGACAA 57.605 42.857 0.00 0.00 44.25 3.18
2606 6343 3.261580 CATTGTCAGTTATCGGCAGACA 58.738 45.455 0.00 0.00 37.43 3.41
2607 6344 3.262420 ACATTGTCAGTTATCGGCAGAC 58.738 45.455 0.00 0.00 0.00 3.51
2608 6345 3.195610 AGACATTGTCAGTTATCGGCAGA 59.804 43.478 18.57 0.00 34.60 4.26
2609 6346 3.525537 AGACATTGTCAGTTATCGGCAG 58.474 45.455 18.57 0.00 34.60 4.85
2610 6347 3.195610 AGAGACATTGTCAGTTATCGGCA 59.804 43.478 18.57 0.00 34.60 5.69
2611 6348 3.786635 AGAGACATTGTCAGTTATCGGC 58.213 45.455 18.57 0.00 34.60 5.54
2612 6349 5.639506 ACAAAGAGACATTGTCAGTTATCGG 59.360 40.000 18.57 5.54 36.28 4.18
2613 6350 6.712241 ACAAAGAGACATTGTCAGTTATCG 57.288 37.500 18.57 6.59 36.28 2.92
2614 6351 7.805071 CCAAACAAAGAGACATTGTCAGTTATC 59.195 37.037 18.57 7.16 39.98 1.75
2615 6352 7.651808 CCAAACAAAGAGACATTGTCAGTTAT 58.348 34.615 18.57 0.00 39.98 1.89
2616 6353 6.459573 GCCAAACAAAGAGACATTGTCAGTTA 60.460 38.462 18.57 0.00 39.98 2.24
2617 6354 5.679638 GCCAAACAAAGAGACATTGTCAGTT 60.680 40.000 18.57 8.44 39.98 3.16
2618 6355 4.202050 GCCAAACAAAGAGACATTGTCAGT 60.202 41.667 18.57 2.53 39.98 3.41
2619 6356 4.293415 GCCAAACAAAGAGACATTGTCAG 58.707 43.478 18.57 5.79 39.98 3.51
2620 6357 3.243035 CGCCAAACAAAGAGACATTGTCA 60.243 43.478 18.57 0.00 39.98 3.58
2621 6358 3.300009 CGCCAAACAAAGAGACATTGTC 58.700 45.455 8.82 8.82 39.98 3.18
2626 6363 1.092921 ACGCGCCAAACAAAGAGACA 61.093 50.000 5.73 0.00 0.00 3.41
2748 6485 4.694760 TGTCCATCATCTTACCCATCAG 57.305 45.455 0.00 0.00 0.00 2.90
2906 6643 0.476808 TGGTGGTGGGGTAGTTCCAT 60.477 55.000 0.00 0.00 36.58 3.41
3266 7003 0.605319 TGGCCATGTTCACGAGGTTC 60.605 55.000 0.00 0.00 0.00 3.62
3275 7012 2.418368 TCATGTAGGTGGCCATGTTC 57.582 50.000 9.72 0.00 39.53 3.18
3324 7064 1.348696 TGTTGCTTGAGCCAGATGAGA 59.651 47.619 0.00 0.00 41.18 3.27
3325 7065 1.817357 TGTTGCTTGAGCCAGATGAG 58.183 50.000 0.00 0.00 41.18 2.90
3326 7066 1.881973 GTTGTTGCTTGAGCCAGATGA 59.118 47.619 0.00 0.00 41.18 2.92
3327 7067 1.068055 GGTTGTTGCTTGAGCCAGATG 60.068 52.381 0.00 0.00 41.18 2.90
3328 7068 1.202976 AGGTTGTTGCTTGAGCCAGAT 60.203 47.619 0.00 0.00 41.18 2.90
3345 7085 5.197451 AGACTATGAGAGTTTGATCGAGGT 58.803 41.667 0.00 0.00 39.06 3.85
3346 7086 5.298026 TGAGACTATGAGAGTTTGATCGAGG 59.702 44.000 0.00 0.00 39.06 4.63
3364 7104 1.735386 GTGAGTGCATGCATGAGACT 58.265 50.000 30.64 26.92 0.00 3.24
3365 7105 0.372679 CGTGAGTGCATGCATGAGAC 59.627 55.000 30.64 23.02 0.00 3.36
3366 7106 0.741927 CCGTGAGTGCATGCATGAGA 60.742 55.000 30.64 12.73 0.00 3.27
3367 7107 1.022982 ACCGTGAGTGCATGCATGAG 61.023 55.000 30.64 13.33 0.00 2.90
3373 7113 0.110056 GCAGAAACCGTGAGTGCATG 60.110 55.000 0.00 0.00 34.18 4.06
3374 7114 0.250467 AGCAGAAACCGTGAGTGCAT 60.250 50.000 0.00 0.00 36.57 3.96
3376 7116 1.571460 CAGCAGAAACCGTGAGTGC 59.429 57.895 0.00 0.00 0.00 4.40
3377 7117 0.882042 AGCAGCAGAAACCGTGAGTG 60.882 55.000 0.00 0.00 0.00 3.51
3378 7118 0.679505 TAGCAGCAGAAACCGTGAGT 59.320 50.000 0.00 0.00 0.00 3.41
3379 7119 1.071605 GTAGCAGCAGAAACCGTGAG 58.928 55.000 0.00 0.00 0.00 3.51
3569 7309 6.071108 AGCACATAATATTAGAGAGATGCCGT 60.071 38.462 1.02 0.00 0.00 5.68
3593 7333 0.529833 TTCTTCTCTGGAGAGCGCAG 59.470 55.000 11.47 0.00 41.80 5.18
3594 7334 0.529833 CTTCTTCTCTGGAGAGCGCA 59.470 55.000 11.47 0.00 41.80 6.09
3595 7335 0.179113 CCTTCTTCTCTGGAGAGCGC 60.179 60.000 0.00 0.00 41.80 5.92
3596 7336 0.179113 GCCTTCTTCTCTGGAGAGCG 60.179 60.000 0.00 0.00 41.80 5.03
3654 7398 5.181245 CGTATTGATCCTTGTCAACCTTTGT 59.819 40.000 0.00 0.00 40.60 2.83
3728 7472 4.475135 GGCTTCCCTCCGGTGAGC 62.475 72.222 4.76 6.12 37.29 4.26
3746 7490 0.107831 AGTAACCCTTGTCGCTGCAA 59.892 50.000 0.00 0.00 0.00 4.08
3870 7614 1.538047 TGTTCTGGCAGAGGAAATGC 58.462 50.000 17.91 4.31 43.09 3.56
3884 7628 3.290710 ACTGTCAGGTTGCAAATGTTCT 58.709 40.909 0.00 0.00 0.00 3.01
3893 7637 0.861837 CGACTCAACTGTCAGGTTGC 59.138 55.000 4.53 0.00 44.19 4.17
3928 7672 0.108615 AGTTTCAGGCCGTCAGATCG 60.109 55.000 0.00 0.00 0.00 3.69
3968 7712 0.905357 CTCCTCCACCGTCCTGAAAT 59.095 55.000 0.00 0.00 0.00 2.17
4077 7826 3.278592 GACGACACCGGACCTGACC 62.279 68.421 9.46 0.00 40.78 4.02
4185 7934 1.540267 GTGTGCAGGTACTTCTCGAGA 59.460 52.381 12.08 12.08 34.60 4.04
4191 7940 2.143925 GTCTTGGTGTGCAGGTACTTC 58.856 52.381 0.00 0.00 34.60 3.01
4212 7961 1.248785 TGTAGAGCGGAGTGACCACC 61.249 60.000 0.00 0.00 38.90 4.61
4236 7985 1.303561 TCAACATCACAGCCAGGGC 60.304 57.895 0.97 0.97 42.33 5.19
4266 8015 1.723608 TTCGCCTGTGCTGTTTGTGG 61.724 55.000 0.00 0.00 34.43 4.17
4373 8123 2.940514 TACTTGGACTGGGGATCTGA 57.059 50.000 0.00 0.00 0.00 3.27
4374 8124 5.630415 TTAATACTTGGACTGGGGATCTG 57.370 43.478 0.00 0.00 0.00 2.90
4377 8127 6.153924 AGAGATTAATACTTGGACTGGGGAT 58.846 40.000 0.00 0.00 0.00 3.85
4378 8128 5.538877 AGAGATTAATACTTGGACTGGGGA 58.461 41.667 0.00 0.00 0.00 4.81
4379 8129 5.896073 AGAGATTAATACTTGGACTGGGG 57.104 43.478 0.00 0.00 0.00 4.96
4380 8130 7.361457 TGTAGAGATTAATACTTGGACTGGG 57.639 40.000 0.00 0.00 0.00 4.45
4381 8131 8.696374 TCTTGTAGAGATTAATACTTGGACTGG 58.304 37.037 0.00 0.00 0.00 4.00
4383 8133 8.407064 CGTCTTGTAGAGATTAATACTTGGACT 58.593 37.037 0.00 0.00 36.61 3.85
4384 8134 8.404000 TCGTCTTGTAGAGATTAATACTTGGAC 58.596 37.037 0.00 0.00 36.61 4.02
4385 8135 8.515695 TCGTCTTGTAGAGATTAATACTTGGA 57.484 34.615 0.00 0.00 36.61 3.53
4386 8136 9.582431 TTTCGTCTTGTAGAGATTAATACTTGG 57.418 33.333 0.00 0.00 36.61 3.61
4456 8209 2.163010 GGTGAAAGAGTGACGGTATCGA 59.837 50.000 0.34 0.00 40.11 3.59
4507 8268 4.096532 TCATCGACTCAAAGCGACTTCTAT 59.903 41.667 0.00 0.00 39.56 1.98
4510 8271 2.596452 TCATCGACTCAAAGCGACTTC 58.404 47.619 0.00 0.00 39.56 3.01
4521 8282 7.721286 ACTCATATTTTTGGATCATCGACTC 57.279 36.000 0.00 0.00 0.00 3.36
4529 8290 6.223852 TCGAGGCTACTCATATTTTTGGATC 58.776 40.000 0.00 0.00 44.17 3.36
4545 8306 4.207955 AGTATGTTCATCACTCGAGGCTA 58.792 43.478 18.41 1.38 0.00 3.93
4570 8331 1.503784 TCTAGAGGATCATCCCCGGTT 59.496 52.381 3.23 0.00 37.19 4.44
4585 8346 8.100164 TGTGATTCAACAACCAACATATCTAGA 58.900 33.333 0.00 0.00 0.00 2.43
4591 8352 6.951062 TCTTGTGATTCAACAACCAACATA 57.049 33.333 0.00 0.00 35.16 2.29
4664 8429 4.981389 TTGCGGCATGTTATTTTTGTTC 57.019 36.364 2.28 0.00 0.00 3.18
4673 8438 6.634837 CGAATTTATGTTATTGCGGCATGTTA 59.365 34.615 2.28 0.00 0.00 2.41
4875 8643 2.045242 CGGTCCCCTCGTCTCTGA 60.045 66.667 0.00 0.00 0.00 3.27
4891 8660 1.132500 AAATAGGAGCTCCCCCTTCG 58.868 55.000 29.54 0.00 35.30 3.79
4914 8683 3.132925 GCTGGTTTTCAACATGCATTGT 58.867 40.909 0.00 0.00 41.53 2.71
4950 8719 2.869503 AAAGGATGTGCGGGGTAGCG 62.870 60.000 0.00 0.00 40.67 4.26
4952 8721 1.094785 CAAAAGGATGTGCGGGGTAG 58.905 55.000 0.00 0.00 0.00 3.18
4961 8731 2.679996 GCCGGCCCAAAAGGATGT 60.680 61.111 18.11 0.00 38.24 3.06
5032 8802 8.436046 AGCAATAAAAATGCAAAGAAAGAACA 57.564 26.923 0.00 0.00 46.22 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.