Multiple sequence alignment - TraesCS3D01G412300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G412300 chr3D 100.000 2538 0 0 1 2538 524776112 524773575 0.000000e+00 4687
1 TraesCS3D01G412300 chr3D 93.452 168 9 1 2084 2251 238999411 238999576 5.420000e-62 248
2 TraesCS3D01G412300 chr3A 88.668 1156 58 23 793 1904 659040823 659039697 0.000000e+00 1341
3 TraesCS3D01G412300 chr3A 88.288 222 16 6 559 772 659041029 659040810 9.010000e-65 257
4 TraesCS3D01G412300 chr3A 92.353 170 11 1 2082 2251 200806302 200806135 9.070000e-60 241
5 TraesCS3D01G412300 chr3A 89.412 170 12 3 1922 2087 659039707 659039540 2.560000e-50 209
6 TraesCS3D01G412300 chr3B 91.016 768 29 17 819 1560 692128582 692127829 0.000000e+00 1000
7 TraesCS3D01G412300 chr4B 90.563 551 18 16 1 527 429380011 429380551 0.000000e+00 699
8 TraesCS3D01G412300 chr4B 93.333 165 9 1 2087 2251 63753841 63754003 2.520000e-60 243
9 TraesCS3D01G412300 chrUn 87.531 409 15 15 140 525 342897518 342897123 8.330000e-120 440
10 TraesCS3D01G412300 chr5D 96.341 164 4 1 2087 2250 517415759 517415598 4.160000e-68 268
11 TraesCS3D01G412300 chr7B 93.902 164 8 1 2087 2250 561750774 561750613 1.950000e-61 246
12 TraesCS3D01G412300 chr1A 93.373 166 9 1 2085 2250 15540160 15539997 7.010000e-61 244
13 TraesCS3D01G412300 chr2D 91.061 179 14 1 2072 2250 305514854 305515030 9.070000e-60 241
14 TraesCS3D01G412300 chr4A 91.429 175 11 3 2079 2251 735663898 735664070 1.170000e-58 237
15 TraesCS3D01G412300 chr7D 90.503 179 13 3 2084 2261 614668976 614669151 1.520000e-57 233
16 TraesCS3D01G412300 chr7D 79.348 276 44 10 2264 2538 545768171 545767908 5.580000e-42 182
17 TraesCS3D01G412300 chr5A 82.041 245 32 9 2289 2531 526522778 526523012 5.540000e-47 198
18 TraesCS3D01G412300 chr2A 79.298 285 24 20 100 366 769969091 769968824 1.560000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G412300 chr3D 524773575 524776112 2537 True 4687.000000 4687 100.000000 1 2538 1 chr3D.!!$R1 2537
1 TraesCS3D01G412300 chr3A 659039540 659041029 1489 True 602.333333 1341 88.789333 559 2087 3 chr3A.!!$R2 1528
2 TraesCS3D01G412300 chr3B 692127829 692128582 753 True 1000.000000 1000 91.016000 819 1560 1 chr3B.!!$R1 741
3 TraesCS3D01G412300 chr4B 429380011 429380551 540 False 699.000000 699 90.563000 1 527 1 chr4B.!!$F2 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 180 0.031585 TCACACAGTCACGTAGCACC 59.968 55.0 0.0 0.0 0.0 5.01 F
180 181 0.032130 CACACAGTCACGTAGCACCT 59.968 55.0 0.0 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1055 1103 0.171455 TTGGGTTTGTGTGTGTTCGC 59.829 50.0 0.0 0.0 0.0 4.70 R
1677 1761 0.247736 GCTATGGCCGACTCCTATGG 59.752 60.0 0.0 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.553418 GAGATAGAAGAAAAGAAGTTGATTTGC 57.447 33.333 0.00 0.00 0.00 3.68
42 43 5.523369 AGAAGAAAAGAAGTTGATTTGCGG 58.477 37.500 0.00 0.00 0.00 5.69
43 44 5.299279 AGAAGAAAAGAAGTTGATTTGCGGA 59.701 36.000 0.00 0.00 0.00 5.54
44 45 5.514274 AGAAAAGAAGTTGATTTGCGGAA 57.486 34.783 0.00 0.00 0.00 4.30
48 49 6.588348 AAAGAAGTTGATTTGCGGAAAAAG 57.412 33.333 6.08 0.00 0.00 2.27
56 57 5.901552 TGATTTGCGGAAAAAGAAGAAGTT 58.098 33.333 6.08 0.00 0.00 2.66
101 102 1.548269 CCAGAGTTGAGAGGGAGACAC 59.452 57.143 0.00 0.00 0.00 3.67
129 130 4.572389 ACACAACATCTTCTGTCACTGTTC 59.428 41.667 0.00 0.00 36.98 3.18
141 142 1.416401 TCACTGTTCACAACCCCTCTC 59.584 52.381 0.00 0.00 0.00 3.20
142 143 1.417890 CACTGTTCACAACCCCTCTCT 59.582 52.381 0.00 0.00 0.00 3.10
143 144 1.694696 ACTGTTCACAACCCCTCTCTC 59.305 52.381 0.00 0.00 0.00 3.20
145 146 2.370189 CTGTTCACAACCCCTCTCTCTT 59.630 50.000 0.00 0.00 0.00 2.85
146 147 2.368875 TGTTCACAACCCCTCTCTCTTC 59.631 50.000 0.00 0.00 0.00 2.87
147 148 2.635427 GTTCACAACCCCTCTCTCTTCT 59.365 50.000 0.00 0.00 0.00 2.85
148 149 2.977808 TCACAACCCCTCTCTCTTCTT 58.022 47.619 0.00 0.00 0.00 2.52
149 150 2.900546 TCACAACCCCTCTCTCTTCTTC 59.099 50.000 0.00 0.00 0.00 2.87
179 180 0.031585 TCACACAGTCACGTAGCACC 59.968 55.000 0.00 0.00 0.00 5.01
180 181 0.032130 CACACAGTCACGTAGCACCT 59.968 55.000 0.00 0.00 0.00 4.00
237 238 4.887748 TCGCTCCCTTTGAATCTCATATC 58.112 43.478 0.00 0.00 0.00 1.63
287 290 2.164219 CACTCTCTGCTCACTCTTCTCC 59.836 54.545 0.00 0.00 0.00 3.71
302 305 2.496899 TCTCCAGATTGGTCAAAGGC 57.503 50.000 0.00 0.00 39.03 4.35
332 335 2.024941 GGTGGGATGGAGGAGAAAATGT 60.025 50.000 0.00 0.00 0.00 2.71
359 362 3.361158 TTTGGCCCATGCGTGTCG 61.361 61.111 0.00 0.00 38.85 4.35
360 363 3.834013 TTTGGCCCATGCGTGTCGA 62.834 57.895 0.00 0.00 38.85 4.20
363 366 1.522806 GGCCCATGCGTGTCGATTA 60.523 57.895 4.96 0.00 38.85 1.75
364 367 1.092921 GGCCCATGCGTGTCGATTAA 61.093 55.000 4.96 0.00 38.85 1.40
365 368 0.730265 GCCCATGCGTGTCGATTAAA 59.270 50.000 4.96 0.00 0.00 1.52
403 422 2.749441 GCAGCTTCCCCACAGCTC 60.749 66.667 0.00 0.00 44.77 4.09
407 426 3.710722 CTTCCCCACAGCTCGCCT 61.711 66.667 0.00 0.00 0.00 5.52
420 445 1.341531 GCTCGCCTCTCCTGCTAATTA 59.658 52.381 0.00 0.00 0.00 1.40
513 538 4.777854 TGGAGCTCGGCCTAGGCA 62.778 66.667 34.09 14.89 44.11 4.75
527 552 3.867216 GCCTAGGCAGAAACTTTCCGTTA 60.867 47.826 29.33 0.00 41.49 3.18
528 553 4.514401 CCTAGGCAGAAACTTTCCGTTAT 58.486 43.478 0.00 0.00 33.90 1.89
529 554 4.941873 CCTAGGCAGAAACTTTCCGTTATT 59.058 41.667 0.00 0.00 33.90 1.40
530 555 5.414765 CCTAGGCAGAAACTTTCCGTTATTT 59.585 40.000 0.00 0.00 33.90 1.40
531 556 5.784578 AGGCAGAAACTTTCCGTTATTTT 57.215 34.783 0.00 0.00 33.90 1.82
532 557 6.887626 AGGCAGAAACTTTCCGTTATTTTA 57.112 33.333 0.00 0.00 33.90 1.52
533 558 7.462571 AGGCAGAAACTTTCCGTTATTTTAT 57.537 32.000 0.00 0.00 33.90 1.40
534 559 7.892609 AGGCAGAAACTTTCCGTTATTTTATT 58.107 30.769 0.00 0.00 33.90 1.40
535 560 8.364894 AGGCAGAAACTTTCCGTTATTTTATTT 58.635 29.630 0.00 0.00 33.90 1.40
536 561 8.984764 GGCAGAAACTTTCCGTTATTTTATTTT 58.015 29.630 0.00 0.00 33.90 1.82
583 608 5.547181 GCTTTAGCTACCTCGATTGTTTT 57.453 39.130 0.00 0.00 38.21 2.43
630 663 1.469703 CAACGGGTTTAAACGGGATCC 59.530 52.381 12.07 1.92 0.00 3.36
642 675 3.601277 GGGATCCGATTTACGTCCC 57.399 57.895 5.45 0.00 45.40 4.46
683 716 3.005554 AGAAGCAACATGACCAAGATCG 58.994 45.455 0.00 0.00 0.00 3.69
758 791 4.855715 TCAGTGTGAGTAGACTCCAAAG 57.144 45.455 7.21 2.40 42.20 2.77
759 792 4.470602 TCAGTGTGAGTAGACTCCAAAGA 58.529 43.478 7.21 4.29 42.20 2.52
760 793 4.893524 TCAGTGTGAGTAGACTCCAAAGAA 59.106 41.667 7.21 0.00 42.20 2.52
761 794 5.362717 TCAGTGTGAGTAGACTCCAAAGAAA 59.637 40.000 7.21 0.00 42.20 2.52
762 795 6.049149 CAGTGTGAGTAGACTCCAAAGAAAA 58.951 40.000 7.21 0.00 42.20 2.29
763 796 6.538742 CAGTGTGAGTAGACTCCAAAGAAAAA 59.461 38.462 7.21 0.00 42.20 1.94
887 932 0.321996 GCCAAGGTATCGATCCTCCC 59.678 60.000 14.33 6.16 33.76 4.30
962 1007 2.355444 CAGTGTGCACATGTGTCTTTCA 59.645 45.455 24.69 12.79 0.00 2.69
979 1024 0.690192 TCACGAGGAAATTCCCTGCA 59.310 50.000 8.66 0.00 37.19 4.41
981 1026 0.400213 ACGAGGAAATTCCCTGCACA 59.600 50.000 8.66 0.00 37.19 4.57
982 1027 0.804989 CGAGGAAATTCCCTGCACAC 59.195 55.000 8.66 0.00 37.19 3.82
983 1028 1.611673 CGAGGAAATTCCCTGCACACT 60.612 52.381 8.66 0.00 37.19 3.55
984 1029 2.087646 GAGGAAATTCCCTGCACACTC 58.912 52.381 8.66 0.00 37.19 3.51
985 1030 1.707427 AGGAAATTCCCTGCACACTCT 59.293 47.619 8.66 0.00 37.19 3.24
1029 1075 1.098050 GCACCTCATCCCACAACATC 58.902 55.000 0.00 0.00 0.00 3.06
1032 1078 1.283029 ACCTCATCCCACAACATCCTG 59.717 52.381 0.00 0.00 0.00 3.86
1034 1080 0.697658 TCATCCCACAACATCCTGCA 59.302 50.000 0.00 0.00 0.00 4.41
1055 1103 0.599204 ACAACTGGTCCTACAACGCG 60.599 55.000 3.53 3.53 0.00 6.01
1090 1142 4.568072 ACCCAAGCACATAGTAACATCA 57.432 40.909 0.00 0.00 0.00 3.07
1091 1143 4.261801 ACCCAAGCACATAGTAACATCAC 58.738 43.478 0.00 0.00 0.00 3.06
1200 1253 3.791539 GCAGGAGCACATCGTCAG 58.208 61.111 0.00 0.00 41.58 3.51
1304 1366 4.200283 GCAGGCTCGAGGAGGACG 62.200 72.222 15.58 0.00 0.00 4.79
1395 1457 0.242017 ACGTAACGGAGCACACTACC 59.758 55.000 0.00 0.00 0.00 3.18
1416 1490 3.249320 CCATGTGTGTATATGTCAGCAGC 59.751 47.826 0.00 0.00 0.00 5.25
1459 1533 3.565516 CACAGTCGTATAGCGTATGCAT 58.434 45.455 10.11 3.79 46.23 3.96
1557 1631 7.275920 ACCAGAATAAAGCTTCTCGTGATTAT 58.724 34.615 0.00 0.00 33.18 1.28
1643 1727 4.261322 CCGAGCTAGTATAACCGTTAGCAA 60.261 45.833 5.91 0.00 40.66 3.91
1656 1740 4.572389 ACCGTTAGCAACATGATGATTCTC 59.428 41.667 7.22 0.00 0.00 2.87
1669 1753 7.398047 ACATGATGATTCTCAAAAATGAAGGGA 59.602 33.333 0.00 0.00 0.00 4.20
1673 1757 6.748132 TGATTCTCAAAAATGAAGGGAACAC 58.252 36.000 0.00 0.00 0.00 3.32
1674 1758 5.529581 TTCTCAAAAATGAAGGGAACACC 57.470 39.130 0.00 0.00 40.67 4.16
1675 1759 3.568007 TCTCAAAAATGAAGGGAACACCG 59.432 43.478 0.00 0.00 46.96 4.94
1676 1760 2.625790 TCAAAAATGAAGGGAACACCGG 59.374 45.455 0.00 0.00 46.96 5.28
1677 1761 0.966179 AAAATGAAGGGAACACCGGC 59.034 50.000 0.00 0.00 46.96 6.13
1678 1762 0.898326 AAATGAAGGGAACACCGGCC 60.898 55.000 0.00 0.00 46.96 6.13
1679 1763 2.075355 AATGAAGGGAACACCGGCCA 62.075 55.000 0.00 0.00 46.96 5.36
1680 1764 1.863155 ATGAAGGGAACACCGGCCAT 61.863 55.000 0.00 0.00 46.96 4.40
1681 1765 1.202099 TGAAGGGAACACCGGCCATA 61.202 55.000 0.00 0.00 46.96 2.74
1682 1766 0.463833 GAAGGGAACACCGGCCATAG 60.464 60.000 0.00 0.00 46.96 2.23
1683 1767 1.921869 AAGGGAACACCGGCCATAGG 61.922 60.000 0.00 0.00 46.96 2.57
1684 1768 2.372074 GGGAACACCGGCCATAGGA 61.372 63.158 0.00 0.00 0.00 2.94
1685 1769 1.146263 GGAACACCGGCCATAGGAG 59.854 63.158 0.00 0.00 0.00 3.69
1686 1770 1.623542 GGAACACCGGCCATAGGAGT 61.624 60.000 0.00 0.00 34.06 3.85
1687 1771 0.179081 GAACACCGGCCATAGGAGTC 60.179 60.000 0.00 0.00 31.44 3.36
1688 1772 1.956629 AACACCGGCCATAGGAGTCG 61.957 60.000 0.00 0.00 31.44 4.18
1689 1773 2.838225 ACCGGCCATAGGAGTCGG 60.838 66.667 0.00 1.68 45.42 4.79
1717 1801 2.286477 CCATCAGCTACGACGTCTACAG 60.286 54.545 14.70 8.61 0.00 2.74
1729 1813 2.987149 ACGTCTACAGATTTCACAAGCG 59.013 45.455 0.00 0.00 0.00 4.68
1731 1815 3.585862 GTCTACAGATTTCACAAGCGGA 58.414 45.455 0.00 0.00 0.00 5.54
1746 1830 1.137872 AGCGGATGAACCATCTCAGTC 59.862 52.381 6.86 0.00 40.39 3.51
1757 1841 3.772025 ACCATCTCAGTCTGGAGGTTTAG 59.228 47.826 0.00 0.00 36.35 1.85
1758 1842 3.133721 CCATCTCAGTCTGGAGGTTTAGG 59.866 52.174 0.00 0.00 35.58 2.69
1759 1843 3.544698 TCTCAGTCTGGAGGTTTAGGT 57.455 47.619 0.00 0.00 35.58 3.08
1760 1844 4.669866 TCTCAGTCTGGAGGTTTAGGTA 57.330 45.455 0.00 0.00 35.58 3.08
1761 1845 5.208294 TCTCAGTCTGGAGGTTTAGGTAT 57.792 43.478 0.00 0.00 35.58 2.73
1763 1847 5.422331 TCTCAGTCTGGAGGTTTAGGTATTG 59.578 44.000 0.00 0.00 35.58 1.90
1764 1848 4.081087 TCAGTCTGGAGGTTTAGGTATTGC 60.081 45.833 0.00 0.00 0.00 3.56
1765 1849 4.080863 CAGTCTGGAGGTTTAGGTATTGCT 60.081 45.833 0.00 0.00 0.00 3.91
1766 1850 4.080863 AGTCTGGAGGTTTAGGTATTGCTG 60.081 45.833 0.00 0.00 0.00 4.41
1800 1889 4.067896 CAGGATGTCAATATGTGCCTACC 58.932 47.826 0.00 0.00 0.00 3.18
1856 1945 9.657419 AGAATCAATCATGTTAATTTGGTTTCC 57.343 29.630 0.00 0.00 0.00 3.13
1892 1981 6.174049 GCTCTGGTGTAATAAAACTTCTCCT 58.826 40.000 0.00 0.00 0.00 3.69
1897 1986 6.940298 TGGTGTAATAAAACTTCTCCTCCTTG 59.060 38.462 0.00 0.00 0.00 3.61
1898 1987 6.940867 GGTGTAATAAAACTTCTCCTCCTTGT 59.059 38.462 0.00 0.00 0.00 3.16
1899 1988 8.098912 GGTGTAATAAAACTTCTCCTCCTTGTA 58.901 37.037 0.00 0.00 0.00 2.41
1900 1989 9.668497 GTGTAATAAAACTTCTCCTCCTTGTAT 57.332 33.333 0.00 0.00 0.00 2.29
1903 1992 8.494016 AATAAAACTTCTCCTCCTTGTATTCG 57.506 34.615 0.00 0.00 0.00 3.34
1904 1993 5.740290 AAACTTCTCCTCCTTGTATTCGA 57.260 39.130 0.00 0.00 0.00 3.71
1905 1994 4.993029 ACTTCTCCTCCTTGTATTCGAG 57.007 45.455 0.00 0.00 0.00 4.04
1906 1995 4.601084 ACTTCTCCTCCTTGTATTCGAGA 58.399 43.478 0.00 0.00 0.00 4.04
1907 1996 5.017490 ACTTCTCCTCCTTGTATTCGAGAA 58.983 41.667 0.00 0.00 35.62 2.87
1908 1997 5.480772 ACTTCTCCTCCTTGTATTCGAGAAA 59.519 40.000 0.00 0.00 36.29 2.52
1909 1998 5.995565 TCTCCTCCTTGTATTCGAGAAAA 57.004 39.130 0.00 0.00 0.00 2.29
1910 1999 6.354794 TCTCCTCCTTGTATTCGAGAAAAA 57.645 37.500 0.00 0.00 0.00 1.94
1994 2084 3.933861 AGGAGCCTATGAATTTTCGGT 57.066 42.857 0.00 0.00 0.00 4.69
2001 2091 5.129815 AGCCTATGAATTTTCGGTACTACCA 59.870 40.000 6.06 0.00 38.47 3.25
2064 2157 7.015098 TCACCATTTTCTGTTTTGTGGATGTAT 59.985 33.333 0.00 0.00 0.00 2.29
2074 2167 8.226819 TGTTTTGTGGATGTATTAACTGTTCA 57.773 30.769 0.00 0.00 0.00 3.18
2078 2171 8.492673 TTGTGGATGTATTAACTGTTCATCTC 57.507 34.615 15.31 11.15 36.27 2.75
2080 2173 8.977412 TGTGGATGTATTAACTGTTCATCTCTA 58.023 33.333 15.31 4.92 36.27 2.43
2081 2174 9.988815 GTGGATGTATTAACTGTTCATCTCTAT 57.011 33.333 15.31 0.00 36.27 1.98
2092 2185 8.588290 ACTGTTCATCTCTATCATATACTCCC 57.412 38.462 0.00 0.00 0.00 4.30
2093 2186 8.397957 ACTGTTCATCTCTATCATATACTCCCT 58.602 37.037 0.00 0.00 0.00 4.20
2094 2187 8.815565 TGTTCATCTCTATCATATACTCCCTC 57.184 38.462 0.00 0.00 0.00 4.30
2095 2188 8.619281 TGTTCATCTCTATCATATACTCCCTCT 58.381 37.037 0.00 0.00 0.00 3.69
2096 2189 8.902806 GTTCATCTCTATCATATACTCCCTCTG 58.097 40.741 0.00 0.00 0.00 3.35
2097 2190 8.168905 TCATCTCTATCATATACTCCCTCTGT 57.831 38.462 0.00 0.00 0.00 3.41
2098 2191 8.619281 TCATCTCTATCATATACTCCCTCTGTT 58.381 37.037 0.00 0.00 0.00 3.16
2099 2192 8.902806 CATCTCTATCATATACTCCCTCTGTTC 58.097 40.741 0.00 0.00 0.00 3.18
2100 2193 7.406916 TCTCTATCATATACTCCCTCTGTTCC 58.593 42.308 0.00 0.00 0.00 3.62
2101 2194 7.240828 TCTCTATCATATACTCCCTCTGTTCCT 59.759 40.741 0.00 0.00 0.00 3.36
2102 2195 8.464426 TCTATCATATACTCCCTCTGTTCCTA 57.536 38.462 0.00 0.00 0.00 2.94
2103 2196 8.901841 TCTATCATATACTCCCTCTGTTCCTAA 58.098 37.037 0.00 0.00 0.00 2.69
2104 2197 9.535170 CTATCATATACTCCCTCTGTTCCTAAA 57.465 37.037 0.00 0.00 0.00 1.85
2105 2198 8.980832 ATCATATACTCCCTCTGTTCCTAAAT 57.019 34.615 0.00 0.00 0.00 1.40
2111 2204 9.900112 ATACTCCCTCTGTTCCTAAATATAAGT 57.100 33.333 0.00 0.00 0.00 2.24
2112 2205 8.252624 ACTCCCTCTGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 0.00 3.01
2113 2206 8.068733 ACTCCCTCTGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 0.00 3.24
2114 2207 8.855804 TCCCTCTGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
2115 2208 9.280456 TCCCTCTGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
2116 2209 9.331282 CCCTCTGTTCCTAAATATAAGTCTTTG 57.669 37.037 0.00 0.00 0.00 2.77
2117 2210 9.892130 CCTCTGTTCCTAAATATAAGTCTTTGT 57.108 33.333 0.00 0.00 0.00 2.83
2134 2227 9.793259 AAGTCTTTGTAGAAATTTCACTATGGA 57.207 29.630 19.99 8.45 30.65 3.41
2135 2228 9.220767 AGTCTTTGTAGAAATTTCACTATGGAC 57.779 33.333 19.99 17.70 30.65 4.02
2136 2229 8.451748 GTCTTTGTAGAAATTTCACTATGGACC 58.548 37.037 19.99 0.00 30.65 4.46
2137 2230 8.160765 TCTTTGTAGAAATTTCACTATGGACCA 58.839 33.333 19.99 0.00 0.00 4.02
2138 2231 7.681939 TTGTAGAAATTTCACTATGGACCAC 57.318 36.000 19.99 3.25 0.00 4.16
2139 2232 6.774673 TGTAGAAATTTCACTATGGACCACA 58.225 36.000 19.99 5.40 0.00 4.17
2140 2233 7.402054 TGTAGAAATTTCACTATGGACCACAT 58.598 34.615 19.99 0.00 43.68 3.21
2141 2234 8.544622 TGTAGAAATTTCACTATGGACCACATA 58.455 33.333 19.99 0.00 41.03 2.29
2142 2235 9.561069 GTAGAAATTTCACTATGGACCACATAT 57.439 33.333 19.99 0.00 41.07 1.78
2144 2237 9.561069 AGAAATTTCACTATGGACCACATATAC 57.439 33.333 19.99 0.00 41.07 1.47
2145 2238 7.962964 AATTTCACTATGGACCACATATACG 57.037 36.000 0.00 0.00 41.07 3.06
2146 2239 5.462530 TTCACTATGGACCACATATACGG 57.537 43.478 0.00 0.00 41.07 4.02
2147 2240 4.732065 TCACTATGGACCACATATACGGA 58.268 43.478 0.00 0.00 41.07 4.69
2148 2241 5.330233 TCACTATGGACCACATATACGGAT 58.670 41.667 0.00 0.00 41.07 4.18
2149 2242 5.185056 TCACTATGGACCACATATACGGATG 59.815 44.000 0.00 0.00 41.07 3.51
2150 2243 5.047306 CACTATGGACCACATATACGGATGT 60.047 44.000 0.00 0.00 41.07 3.06
2151 2244 6.152154 CACTATGGACCACATATACGGATGTA 59.848 42.308 0.00 0.00 41.07 2.29
2152 2245 6.895756 ACTATGGACCACATATACGGATGTAT 59.104 38.462 0.00 0.00 41.07 2.29
2153 2246 5.400066 TGGACCACATATACGGATGTATG 57.600 43.478 0.00 0.00 41.37 2.39
2154 2247 4.836175 TGGACCACATATACGGATGTATGT 59.164 41.667 0.00 0.00 42.16 2.29
2155 2248 6.011481 TGGACCACATATACGGATGTATGTA 58.989 40.000 0.00 0.00 40.16 2.29
2156 2249 6.152154 TGGACCACATATACGGATGTATGTAG 59.848 42.308 0.00 0.00 40.16 2.74
2157 2250 6.376299 GGACCACATATACGGATGTATGTAGA 59.624 42.308 0.00 0.00 40.16 2.59
2158 2251 7.068348 GGACCACATATACGGATGTATGTAGAT 59.932 40.741 0.00 0.00 40.16 1.98
2159 2252 7.772166 ACCACATATACGGATGTATGTAGATG 58.228 38.462 0.00 5.68 40.16 2.90
2160 2253 6.697455 CCACATATACGGATGTATGTAGATGC 59.303 42.308 6.84 0.00 41.59 3.91
2161 2254 7.257722 CACATATACGGATGTATGTAGATGCA 58.742 38.462 6.84 0.00 41.59 3.96
2162 2255 7.922811 CACATATACGGATGTATGTAGATGCAT 59.077 37.037 0.00 0.00 41.59 3.96
2163 2256 8.478066 ACATATACGGATGTATGTAGATGCATT 58.522 33.333 0.00 0.00 41.59 3.56
2164 2257 9.317936 CATATACGGATGTATGTAGATGCATTT 57.682 33.333 0.00 0.00 41.37 2.32
2165 2258 9.890629 ATATACGGATGTATGTAGATGCATTTT 57.109 29.630 0.00 0.00 41.37 1.82
2167 2260 7.658179 ACGGATGTATGTAGATGCATTTTAG 57.342 36.000 0.00 1.10 35.26 1.85
2168 2261 7.441836 ACGGATGTATGTAGATGCATTTTAGA 58.558 34.615 0.00 0.00 35.26 2.10
2169 2262 7.600375 ACGGATGTATGTAGATGCATTTTAGAG 59.400 37.037 0.00 0.00 35.26 2.43
2170 2263 7.600375 CGGATGTATGTAGATGCATTTTAGAGT 59.400 37.037 0.00 0.00 35.26 3.24
2171 2264 8.715998 GGATGTATGTAGATGCATTTTAGAGTG 58.284 37.037 0.00 0.00 35.26 3.51
2172 2265 9.265901 GATGTATGTAGATGCATTTTAGAGTGT 57.734 33.333 0.00 0.00 35.26 3.55
2174 2267 9.750125 TGTATGTAGATGCATTTTAGAGTGTAG 57.250 33.333 0.00 0.00 0.00 2.74
2175 2268 9.967346 GTATGTAGATGCATTTTAGAGTGTAGA 57.033 33.333 0.00 0.00 0.00 2.59
2178 2271 9.534565 TGTAGATGCATTTTAGAGTGTAGATTC 57.465 33.333 0.00 0.00 0.00 2.52
2179 2272 9.534565 GTAGATGCATTTTAGAGTGTAGATTCA 57.465 33.333 0.00 0.00 0.00 2.57
2180 2273 8.659925 AGATGCATTTTAGAGTGTAGATTCAG 57.340 34.615 0.00 0.00 0.00 3.02
2181 2274 8.263640 AGATGCATTTTAGAGTGTAGATTCAGT 58.736 33.333 0.00 0.00 0.00 3.41
2182 2275 7.834068 TGCATTTTAGAGTGTAGATTCAGTC 57.166 36.000 0.00 0.00 37.86 3.51
2183 2276 7.386059 TGCATTTTAGAGTGTAGATTCAGTCA 58.614 34.615 0.00 0.00 39.44 3.41
2184 2277 8.043113 TGCATTTTAGAGTGTAGATTCAGTCAT 58.957 33.333 0.00 0.00 39.44 3.06
2185 2278 8.887717 GCATTTTAGAGTGTAGATTCAGTCATT 58.112 33.333 0.00 0.00 39.44 2.57
2189 2282 6.734104 AGAGTGTAGATTCAGTCATTTTGC 57.266 37.500 0.00 0.00 39.44 3.68
2190 2283 6.471146 AGAGTGTAGATTCAGTCATTTTGCT 58.529 36.000 0.00 0.00 39.44 3.91
2191 2284 6.593382 AGAGTGTAGATTCAGTCATTTTGCTC 59.407 38.462 0.00 0.00 39.44 4.26
2192 2285 5.645497 AGTGTAGATTCAGTCATTTTGCTCC 59.355 40.000 0.00 0.00 0.00 4.70
2193 2286 4.631377 TGTAGATTCAGTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2194 2287 3.679389 AGATTCAGTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2195 2288 4.832248 AGATTCAGTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2196 2289 5.431765 AGATTCAGTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2197 2290 4.944962 TTCAGTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2198 2291 3.937814 TCAGTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2199 2292 5.079689 TCAGTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2200 2293 5.109210 TCAGTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2201 2294 4.870426 CAGTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2202 2295 5.351465 CAGTCATTTTGCTCCGTATGTAGTT 59.649 40.000 0.00 0.00 0.00 2.24
2203 2296 5.938125 AGTCATTTTGCTCCGTATGTAGTTT 59.062 36.000 0.00 0.00 0.00 2.66
2204 2297 7.064134 CAGTCATTTTGCTCCGTATGTAGTTTA 59.936 37.037 0.00 0.00 0.00 2.01
2205 2298 7.769044 AGTCATTTTGCTCCGTATGTAGTTTAT 59.231 33.333 0.00 0.00 0.00 1.40
2206 2299 9.037737 GTCATTTTGCTCCGTATGTAGTTTATA 57.962 33.333 0.00 0.00 0.00 0.98
2207 2300 9.256477 TCATTTTGCTCCGTATGTAGTTTATAG 57.744 33.333 0.00 0.00 0.00 1.31
2208 2301 9.042008 CATTTTGCTCCGTATGTAGTTTATAGT 57.958 33.333 0.00 0.00 0.00 2.12
2209 2302 7.997107 TTTGCTCCGTATGTAGTTTATAGTG 57.003 36.000 0.00 0.00 0.00 2.74
2210 2303 6.080648 TGCTCCGTATGTAGTTTATAGTGG 57.919 41.667 0.00 0.00 0.00 4.00
2211 2304 5.829391 TGCTCCGTATGTAGTTTATAGTGGA 59.171 40.000 0.00 0.00 0.00 4.02
2212 2305 6.321945 TGCTCCGTATGTAGTTTATAGTGGAA 59.678 38.462 0.00 0.00 0.00 3.53
2213 2306 7.014905 TGCTCCGTATGTAGTTTATAGTGGAAT 59.985 37.037 0.00 0.00 0.00 3.01
2214 2307 7.541437 GCTCCGTATGTAGTTTATAGTGGAATC 59.459 40.741 0.00 0.00 0.00 2.52
2215 2308 8.701908 TCCGTATGTAGTTTATAGTGGAATCT 57.298 34.615 0.00 0.00 0.00 2.40
2216 2309 8.790718 TCCGTATGTAGTTTATAGTGGAATCTC 58.209 37.037 0.00 0.00 0.00 2.75
2217 2310 8.794553 CCGTATGTAGTTTATAGTGGAATCTCT 58.205 37.037 0.00 0.00 0.00 3.10
2244 2337 8.512138 ACAAAGACTTATATTTTGAAACGGAGG 58.488 33.333 4.27 0.00 36.09 4.30
2245 2338 7.625828 AAGACTTATATTTTGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
2246 2339 6.954232 AGACTTATATTTTGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
2247 2340 7.048512 AGACTTATATTTTGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
2248 2341 6.718294 ACTTATATTTTGAAACGGAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
2249 2342 7.854337 ACTTATATTTTGAAACGGAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
2250 2343 7.767659 ACTTATATTTTGAAACGGAGGGAGTAC 59.232 37.037 0.00 0.00 0.00 2.73
2251 2344 2.443887 TTTGAAACGGAGGGAGTACG 57.556 50.000 0.00 0.00 0.00 3.67
2252 2345 1.331214 TTGAAACGGAGGGAGTACGT 58.669 50.000 0.00 0.00 43.43 3.57
2253 2346 2.198827 TGAAACGGAGGGAGTACGTA 57.801 50.000 0.00 0.00 40.31 3.57
2254 2347 2.086869 TGAAACGGAGGGAGTACGTAG 58.913 52.381 0.00 0.00 40.31 3.51
2256 2349 3.270877 GAAACGGAGGGAGTACGTAGTA 58.729 50.000 2.11 0.00 45.11 1.82
2269 2362 3.738830 ACGTAGTAGAAACCAGTGCAA 57.261 42.857 0.00 0.00 41.94 4.08
2270 2363 4.062677 ACGTAGTAGAAACCAGTGCAAA 57.937 40.909 0.00 0.00 41.94 3.68
2271 2364 4.638304 ACGTAGTAGAAACCAGTGCAAAT 58.362 39.130 0.00 0.00 41.94 2.32
2272 2365 5.786311 ACGTAGTAGAAACCAGTGCAAATA 58.214 37.500 0.00 0.00 41.94 1.40
2273 2366 5.867716 ACGTAGTAGAAACCAGTGCAAATAG 59.132 40.000 0.00 0.00 41.94 1.73
2274 2367 5.291128 CGTAGTAGAAACCAGTGCAAATAGG 59.709 44.000 0.00 0.00 0.00 2.57
2275 2368 4.010349 AGTAGAAACCAGTGCAAATAGGC 58.990 43.478 0.00 0.00 0.00 3.93
2276 2369 2.875296 AGAAACCAGTGCAAATAGGCA 58.125 42.857 0.00 0.00 42.53 4.75
2277 2370 3.230134 AGAAACCAGTGCAAATAGGCAA 58.770 40.909 0.00 0.00 46.93 4.52
2278 2371 3.005791 AGAAACCAGTGCAAATAGGCAAC 59.994 43.478 0.00 0.00 46.93 4.17
2279 2372 1.256812 ACCAGTGCAAATAGGCAACC 58.743 50.000 0.00 0.00 46.93 3.77
2280 2373 0.171007 CCAGTGCAAATAGGCAACCG 59.829 55.000 0.00 0.00 46.93 4.44
2281 2374 0.171007 CAGTGCAAATAGGCAACCGG 59.829 55.000 0.00 0.00 46.93 5.28
2282 2375 0.965363 AGTGCAAATAGGCAACCGGG 60.965 55.000 6.32 0.00 46.93 5.73
2283 2376 0.963355 GTGCAAATAGGCAACCGGGA 60.963 55.000 6.32 0.00 46.93 5.14
2284 2377 0.679640 TGCAAATAGGCAACCGGGAG 60.680 55.000 6.32 0.00 41.65 4.30
2285 2378 0.393808 GCAAATAGGCAACCGGGAGA 60.394 55.000 6.32 0.00 37.17 3.71
2286 2379 1.668419 CAAATAGGCAACCGGGAGAG 58.332 55.000 6.32 0.00 37.17 3.20
2287 2380 0.107165 AAATAGGCAACCGGGAGAGC 60.107 55.000 6.32 3.48 37.17 4.09
2288 2381 1.271840 AATAGGCAACCGGGAGAGCA 61.272 55.000 6.32 0.00 37.17 4.26
2289 2382 1.690219 ATAGGCAACCGGGAGAGCAG 61.690 60.000 6.32 0.00 37.17 4.24
2290 2383 4.785453 GGCAACCGGGAGAGCAGG 62.785 72.222 6.32 0.00 0.00 4.85
2291 2384 4.021925 GCAACCGGGAGAGCAGGT 62.022 66.667 6.32 0.00 40.50 4.00
2292 2385 2.656069 GCAACCGGGAGAGCAGGTA 61.656 63.158 6.32 0.00 37.26 3.08
2293 2386 1.218316 CAACCGGGAGAGCAGGTAC 59.782 63.158 6.32 0.00 37.26 3.34
2294 2387 1.078710 AACCGGGAGAGCAGGTACT 59.921 57.895 6.32 0.00 43.88 2.73
2295 2388 0.544595 AACCGGGAGAGCAGGTACTT 60.545 55.000 6.32 0.00 34.60 2.24
2296 2389 1.258445 ACCGGGAGAGCAGGTACTTG 61.258 60.000 6.32 0.00 34.60 3.16
2297 2390 1.258445 CCGGGAGAGCAGGTACTTGT 61.258 60.000 6.86 0.00 34.60 3.16
2298 2391 1.471119 CGGGAGAGCAGGTACTTGTA 58.529 55.000 6.86 0.00 34.60 2.41
2299 2392 1.134560 CGGGAGAGCAGGTACTTGTAC 59.865 57.143 6.86 2.55 34.60 2.90
2300 2393 2.458620 GGGAGAGCAGGTACTTGTACT 58.541 52.381 6.86 6.34 34.60 2.73
2301 2394 2.166664 GGGAGAGCAGGTACTTGTACTG 59.833 54.545 6.86 0.00 34.60 2.74
2302 2395 3.090037 GGAGAGCAGGTACTTGTACTGA 58.910 50.000 6.86 0.00 34.60 3.41
2303 2396 3.510360 GGAGAGCAGGTACTTGTACTGAA 59.490 47.826 6.86 0.00 34.60 3.02
2304 2397 4.021368 GGAGAGCAGGTACTTGTACTGAAA 60.021 45.833 6.86 0.00 34.60 2.69
2305 2398 5.337652 GGAGAGCAGGTACTTGTACTGAAAT 60.338 44.000 6.86 0.00 34.60 2.17
2306 2399 6.115448 AGAGCAGGTACTTGTACTGAAATT 57.885 37.500 6.86 0.00 34.60 1.82
2307 2400 5.934625 AGAGCAGGTACTTGTACTGAAATTG 59.065 40.000 6.86 2.87 34.60 2.32
2308 2401 5.003804 AGCAGGTACTTGTACTGAAATTGG 58.996 41.667 6.86 0.00 34.60 3.16
2309 2402 4.760204 GCAGGTACTTGTACTGAAATTGGT 59.240 41.667 6.86 0.00 34.60 3.67
2310 2403 5.240844 GCAGGTACTTGTACTGAAATTGGTT 59.759 40.000 6.86 0.00 34.60 3.67
2311 2404 6.238925 GCAGGTACTTGTACTGAAATTGGTTT 60.239 38.462 6.86 0.00 34.60 3.27
2312 2405 7.138736 CAGGTACTTGTACTGAAATTGGTTTG 58.861 38.462 10.26 0.00 34.60 2.93
2313 2406 5.918576 GGTACTTGTACTGAAATTGGTTTGC 59.081 40.000 10.26 0.00 0.00 3.68
2314 2407 5.852282 ACTTGTACTGAAATTGGTTTGCT 57.148 34.783 0.00 0.00 0.00 3.91
2315 2408 6.952773 ACTTGTACTGAAATTGGTTTGCTA 57.047 33.333 0.00 0.00 0.00 3.49
2316 2409 7.524717 ACTTGTACTGAAATTGGTTTGCTAT 57.475 32.000 0.00 0.00 0.00 2.97
2317 2410 8.630054 ACTTGTACTGAAATTGGTTTGCTATA 57.370 30.769 0.00 0.00 0.00 1.31
2318 2411 8.512138 ACTTGTACTGAAATTGGTTTGCTATAC 58.488 33.333 0.00 0.00 0.00 1.47
2319 2412 7.987750 TGTACTGAAATTGGTTTGCTATACA 57.012 32.000 0.00 0.00 0.00 2.29
2320 2413 8.574251 TGTACTGAAATTGGTTTGCTATACAT 57.426 30.769 0.00 0.00 0.00 2.29
2321 2414 9.019656 TGTACTGAAATTGGTTTGCTATACATT 57.980 29.630 0.00 0.00 0.00 2.71
2322 2415 9.855021 GTACTGAAATTGGTTTGCTATACATTT 57.145 29.630 0.00 0.00 0.00 2.32
2324 2417 9.423061 ACTGAAATTGGTTTGCTATACATTTTC 57.577 29.630 0.00 0.00 35.46 2.29
2325 2418 9.421806 CTGAAATTGGTTTGCTATACATTTTCA 57.578 29.630 14.92 14.92 39.15 2.69
2326 2419 9.941325 TGAAATTGGTTTGCTATACATTTTCAT 57.059 25.926 13.25 0.00 37.83 2.57
2330 2423 9.941325 ATTGGTTTGCTATACATTTTCATTTCA 57.059 25.926 0.00 0.00 0.00 2.69
2331 2424 8.755696 TGGTTTGCTATACATTTTCATTTCAC 57.244 30.769 0.00 0.00 0.00 3.18
2332 2425 8.584157 TGGTTTGCTATACATTTTCATTTCACT 58.416 29.630 0.00 0.00 0.00 3.41
2333 2426 9.423061 GGTTTGCTATACATTTTCATTTCACTT 57.577 29.630 0.00 0.00 0.00 3.16
2341 2434 7.839680 ACATTTTCATTTCACTTCTTACCCT 57.160 32.000 0.00 0.00 0.00 4.34
2342 2435 7.661040 ACATTTTCATTTCACTTCTTACCCTG 58.339 34.615 0.00 0.00 0.00 4.45
2343 2436 7.505585 ACATTTTCATTTCACTTCTTACCCTGA 59.494 33.333 0.00 0.00 0.00 3.86
2344 2437 8.526147 CATTTTCATTTCACTTCTTACCCTGAT 58.474 33.333 0.00 0.00 0.00 2.90
2345 2438 7.452880 TTTCATTTCACTTCTTACCCTGATG 57.547 36.000 0.00 0.00 0.00 3.07
2346 2439 5.500234 TCATTTCACTTCTTACCCTGATGG 58.500 41.667 0.00 0.00 41.37 3.51
2347 2440 5.250543 TCATTTCACTTCTTACCCTGATGGA 59.749 40.000 0.00 0.00 38.00 3.41
2348 2441 4.553330 TTCACTTCTTACCCTGATGGAC 57.447 45.455 0.00 0.00 38.00 4.02
2349 2442 3.516586 TCACTTCTTACCCTGATGGACA 58.483 45.455 0.00 0.00 38.00 4.02
2350 2443 3.907474 TCACTTCTTACCCTGATGGACAA 59.093 43.478 0.00 0.00 38.00 3.18
2351 2444 4.536090 TCACTTCTTACCCTGATGGACAAT 59.464 41.667 0.00 0.00 38.00 2.71
2352 2445 5.724370 TCACTTCTTACCCTGATGGACAATA 59.276 40.000 0.00 0.00 38.00 1.90
2353 2446 6.386927 TCACTTCTTACCCTGATGGACAATAT 59.613 38.462 0.00 0.00 38.00 1.28
2354 2447 7.567250 TCACTTCTTACCCTGATGGACAATATA 59.433 37.037 0.00 0.00 38.00 0.86
2355 2448 8.378565 CACTTCTTACCCTGATGGACAATATAT 58.621 37.037 0.00 0.00 38.00 0.86
2356 2449 9.615660 ACTTCTTACCCTGATGGACAATATATA 57.384 33.333 0.00 0.00 38.00 0.86
2357 2450 9.877178 CTTCTTACCCTGATGGACAATATATAC 57.123 37.037 0.00 0.00 38.00 1.47
2358 2451 8.966155 TCTTACCCTGATGGACAATATATACA 57.034 34.615 0.00 0.00 38.00 2.29
2359 2452 8.812972 TCTTACCCTGATGGACAATATATACAC 58.187 37.037 0.00 0.00 38.00 2.90
2360 2453 8.499288 TTACCCTGATGGACAATATATACACA 57.501 34.615 0.00 0.00 38.00 3.72
2361 2454 7.574021 ACCCTGATGGACAATATATACACAT 57.426 36.000 0.00 0.00 38.00 3.21
2362 2455 7.624549 ACCCTGATGGACAATATATACACATC 58.375 38.462 10.37 10.37 38.00 3.06
2363 2456 7.050377 CCCTGATGGACAATATATACACATCC 58.950 42.308 12.92 5.83 35.39 3.51
2364 2457 7.092712 CCCTGATGGACAATATATACACATCCT 60.093 40.741 12.92 0.00 35.39 3.24
2365 2458 8.981659 CCTGATGGACAATATATACACATCCTA 58.018 37.037 12.92 1.48 34.03 2.94
2368 2461 9.988815 GATGGACAATATATACACATCCTATCC 57.011 37.037 0.00 0.00 0.00 2.59
2369 2462 8.909423 TGGACAATATATACACATCCTATCCA 57.091 34.615 0.00 0.00 0.00 3.41
2370 2463 8.981659 TGGACAATATATACACATCCTATCCAG 58.018 37.037 0.00 0.00 0.00 3.86
2371 2464 8.424918 GGACAATATATACACATCCTATCCAGG 58.575 40.741 0.00 0.00 44.17 4.45
2372 2465 8.324191 ACAATATATACACATCCTATCCAGGG 57.676 38.462 0.00 0.00 42.87 4.45
2373 2466 7.906736 ACAATATATACACATCCTATCCAGGGT 59.093 37.037 0.00 0.00 42.87 4.34
2377 2470 2.543569 CATCCTATCCAGGGTGCCA 58.456 57.895 0.00 0.00 46.09 4.92
2378 2471 0.109342 CATCCTATCCAGGGTGCCAC 59.891 60.000 0.00 0.00 46.09 5.01
2379 2472 1.062488 ATCCTATCCAGGGTGCCACC 61.062 60.000 4.93 4.93 42.87 4.61
2380 2473 1.694169 CCTATCCAGGGTGCCACCT 60.694 63.158 14.71 0.00 43.08 4.00
2381 2474 0.399949 CCTATCCAGGGTGCCACCTA 60.400 60.000 14.71 0.00 39.34 3.08
2382 2475 1.507140 CTATCCAGGGTGCCACCTAA 58.493 55.000 14.71 0.00 39.34 2.69
2383 2476 2.057922 CTATCCAGGGTGCCACCTAAT 58.942 52.381 14.71 5.11 39.34 1.73
2384 2477 1.308877 ATCCAGGGTGCCACCTAATT 58.691 50.000 14.71 0.00 39.34 1.40
2385 2478 0.623723 TCCAGGGTGCCACCTAATTC 59.376 55.000 14.71 0.00 39.34 2.17
2386 2479 0.625849 CCAGGGTGCCACCTAATTCT 59.374 55.000 14.71 0.00 39.34 2.40
2387 2480 1.683011 CCAGGGTGCCACCTAATTCTG 60.683 57.143 14.71 11.60 39.34 3.02
2388 2481 0.034089 AGGGTGCCACCTAATTCTGC 60.034 55.000 14.71 0.00 39.65 4.26
2389 2482 0.323360 GGGTGCCACCTAATTCTGCA 60.323 55.000 14.71 0.00 38.64 4.41
2390 2483 1.544724 GGTGCCACCTAATTCTGCAA 58.455 50.000 6.63 0.00 34.73 4.08
2391 2484 1.892474 GGTGCCACCTAATTCTGCAAA 59.108 47.619 6.63 0.00 34.73 3.68
2392 2485 2.352715 GGTGCCACCTAATTCTGCAAAC 60.353 50.000 6.63 0.00 34.73 2.93
2393 2486 2.295909 GTGCCACCTAATTCTGCAAACA 59.704 45.455 0.00 0.00 33.11 2.83
2394 2487 2.961741 TGCCACCTAATTCTGCAAACAA 59.038 40.909 0.00 0.00 0.00 2.83
2395 2488 3.577848 TGCCACCTAATTCTGCAAACAAT 59.422 39.130 0.00 0.00 0.00 2.71
2396 2489 4.769488 TGCCACCTAATTCTGCAAACAATA 59.231 37.500 0.00 0.00 0.00 1.90
2397 2490 5.244851 TGCCACCTAATTCTGCAAACAATAA 59.755 36.000 0.00 0.00 0.00 1.40
2398 2491 6.070881 TGCCACCTAATTCTGCAAACAATAAT 60.071 34.615 0.00 0.00 0.00 1.28
2399 2492 6.818142 GCCACCTAATTCTGCAAACAATAATT 59.182 34.615 0.00 0.00 0.00 1.40
2400 2493 7.334171 GCCACCTAATTCTGCAAACAATAATTT 59.666 33.333 0.00 0.00 0.00 1.82
2401 2494 9.218440 CCACCTAATTCTGCAAACAATAATTTT 57.782 29.630 0.00 0.00 0.00 1.82
2403 2496 9.435688 ACCTAATTCTGCAAACAATAATTTTCC 57.564 29.630 0.00 0.00 0.00 3.13
2404 2497 9.434420 CCTAATTCTGCAAACAATAATTTTCCA 57.566 29.630 0.00 0.00 0.00 3.53
2407 2500 8.851541 ATTCTGCAAACAATAATTTTCCATGT 57.148 26.923 0.00 0.00 0.00 3.21
2408 2501 8.674263 TTCTGCAAACAATAATTTTCCATGTT 57.326 26.923 0.00 0.00 35.86 2.71
2409 2502 8.309163 TCTGCAAACAATAATTTTCCATGTTC 57.691 30.769 0.00 0.00 33.39 3.18
2410 2503 8.149647 TCTGCAAACAATAATTTTCCATGTTCT 58.850 29.630 0.00 0.00 33.39 3.01
2411 2504 9.421806 CTGCAAACAATAATTTTCCATGTTCTA 57.578 29.630 0.00 0.00 33.39 2.10
2412 2505 9.202273 TGCAAACAATAATTTTCCATGTTCTAC 57.798 29.630 0.00 0.00 33.39 2.59
2413 2506 8.655970 GCAAACAATAATTTTCCATGTTCTACC 58.344 33.333 0.00 0.00 33.39 3.18
2414 2507 8.859156 CAAACAATAATTTTCCATGTTCTACCG 58.141 33.333 0.00 0.00 33.39 4.02
2415 2508 6.560711 ACAATAATTTTCCATGTTCTACCGC 58.439 36.000 0.00 0.00 0.00 5.68
2416 2509 6.151985 ACAATAATTTTCCATGTTCTACCGCA 59.848 34.615 0.00 0.00 0.00 5.69
2417 2510 4.701956 AATTTTCCATGTTCTACCGCAG 57.298 40.909 0.00 0.00 0.00 5.18
2432 2525 2.753043 CAGGCCCGCAGCTTCAAT 60.753 61.111 0.00 0.00 43.05 2.57
2433 2526 1.451927 CAGGCCCGCAGCTTCAATA 60.452 57.895 0.00 0.00 43.05 1.90
2434 2527 1.031571 CAGGCCCGCAGCTTCAATAA 61.032 55.000 0.00 0.00 43.05 1.40
2435 2528 0.749454 AGGCCCGCAGCTTCAATAAG 60.749 55.000 0.00 0.00 43.05 1.73
2436 2529 0.748005 GGCCCGCAGCTTCAATAAGA 60.748 55.000 0.00 0.00 43.05 2.10
2437 2530 0.659957 GCCCGCAGCTTCAATAAGAG 59.340 55.000 0.00 0.00 38.99 2.85
2438 2531 1.743772 GCCCGCAGCTTCAATAAGAGA 60.744 52.381 0.00 0.00 38.99 3.10
2439 2532 2.632377 CCCGCAGCTTCAATAAGAGAA 58.368 47.619 0.00 0.00 34.37 2.87
2440 2533 2.611292 CCCGCAGCTTCAATAAGAGAAG 59.389 50.000 0.00 0.00 44.08 2.85
2454 2547 9.725019 TCAATAAGAGAAGCTCAAAAGAATACA 57.275 29.630 0.00 0.00 32.06 2.29
2455 2548 9.766277 CAATAAGAGAAGCTCAAAAGAATACAC 57.234 33.333 0.00 0.00 32.06 2.90
2456 2549 9.507329 AATAAGAGAAGCTCAAAAGAATACACA 57.493 29.630 0.00 0.00 32.06 3.72
2457 2550 7.432350 AAGAGAAGCTCAAAAGAATACACAG 57.568 36.000 0.00 0.00 32.06 3.66
2458 2551 6.763355 AGAGAAGCTCAAAAGAATACACAGA 58.237 36.000 0.00 0.00 32.06 3.41
2459 2552 7.393216 AGAGAAGCTCAAAAGAATACACAGAT 58.607 34.615 0.00 0.00 32.06 2.90
2460 2553 7.333921 AGAGAAGCTCAAAAGAATACACAGATG 59.666 37.037 0.00 0.00 32.06 2.90
2461 2554 5.557891 AGCTCAAAAGAATACACAGATGC 57.442 39.130 0.00 0.00 0.00 3.91
2462 2555 5.005740 AGCTCAAAAGAATACACAGATGCA 58.994 37.500 0.00 0.00 0.00 3.96
2463 2556 5.651139 AGCTCAAAAGAATACACAGATGCAT 59.349 36.000 0.00 0.00 0.00 3.96
2464 2557 6.152323 AGCTCAAAAGAATACACAGATGCATT 59.848 34.615 0.00 0.00 0.00 3.56
2465 2558 6.810182 GCTCAAAAGAATACACAGATGCATTT 59.190 34.615 0.00 0.00 0.00 2.32
2466 2559 7.201410 GCTCAAAAGAATACACAGATGCATTTG 60.201 37.037 15.28 15.28 0.00 2.32
2467 2560 6.587226 TCAAAAGAATACACAGATGCATTTGC 59.413 34.615 16.67 0.08 42.50 3.68
2481 2574 4.049546 GCATTTGCAAATATGGAGAGCA 57.950 40.909 23.69 0.00 41.59 4.26
2482 2575 4.628074 GCATTTGCAAATATGGAGAGCAT 58.372 39.130 23.69 0.00 41.59 3.79
2483 2576 5.775686 GCATTTGCAAATATGGAGAGCATA 58.224 37.500 23.69 0.00 41.59 3.14
2484 2577 6.218019 GCATTTGCAAATATGGAGAGCATAA 58.782 36.000 23.69 0.00 41.59 1.90
2485 2578 6.702723 GCATTTGCAAATATGGAGAGCATAAA 59.297 34.615 23.69 0.00 41.59 1.40
2486 2579 7.225145 GCATTTGCAAATATGGAGAGCATAAAA 59.775 33.333 23.69 0.00 41.59 1.52
2487 2580 8.761497 CATTTGCAAATATGGAGAGCATAAAAG 58.239 33.333 23.69 2.42 34.87 2.27
2488 2581 7.643569 TTGCAAATATGGAGAGCATAAAAGA 57.356 32.000 0.00 0.00 34.87 2.52
2489 2582 7.031226 TGCAAATATGGAGAGCATAAAAGAC 57.969 36.000 0.00 0.00 0.00 3.01
2490 2583 6.830324 TGCAAATATGGAGAGCATAAAAGACT 59.170 34.615 0.00 0.00 0.00 3.24
2491 2584 7.012704 TGCAAATATGGAGAGCATAAAAGACTC 59.987 37.037 0.00 0.00 0.00 3.36
2492 2585 7.012704 GCAAATATGGAGAGCATAAAAGACTCA 59.987 37.037 0.00 0.00 32.71 3.41
2493 2586 8.557864 CAAATATGGAGAGCATAAAAGACTCAG 58.442 37.037 0.00 0.00 32.71 3.35
2494 2587 5.690464 ATGGAGAGCATAAAAGACTCAGT 57.310 39.130 0.00 0.00 32.71 3.41
2495 2588 6.798427 ATGGAGAGCATAAAAGACTCAGTA 57.202 37.500 0.00 0.00 32.71 2.74
2496 2589 6.798427 TGGAGAGCATAAAAGACTCAGTAT 57.202 37.500 0.00 0.00 32.71 2.12
2497 2590 7.187824 TGGAGAGCATAAAAGACTCAGTATT 57.812 36.000 0.00 0.00 32.71 1.89
2498 2591 7.624549 TGGAGAGCATAAAAGACTCAGTATTT 58.375 34.615 0.00 0.00 32.71 1.40
2499 2592 8.758829 TGGAGAGCATAAAAGACTCAGTATTTA 58.241 33.333 0.00 0.00 32.71 1.40
2500 2593 9.771534 GGAGAGCATAAAAGACTCAGTATTTAT 57.228 33.333 0.00 0.48 32.71 1.40
2523 2616 9.677567 TTATAACTTTCAAACATGAGTTCAAGC 57.322 29.630 0.00 0.00 36.84 4.01
2524 2617 4.936891 ACTTTCAAACATGAGTTCAAGCC 58.063 39.130 0.00 0.00 36.84 4.35
2525 2618 4.646492 ACTTTCAAACATGAGTTCAAGCCT 59.354 37.500 0.00 0.00 36.84 4.58
2526 2619 4.572985 TTCAAACATGAGTTCAAGCCTG 57.427 40.909 0.00 0.00 36.84 4.85
2527 2620 3.819368 TCAAACATGAGTTCAAGCCTGA 58.181 40.909 0.00 0.00 36.84 3.86
2528 2621 4.206375 TCAAACATGAGTTCAAGCCTGAA 58.794 39.130 0.00 0.00 39.30 3.02
2536 2629 2.704725 TTCAAGCCTGAACAAATCGC 57.295 45.000 0.00 0.00 36.62 4.58
2537 2630 1.896220 TCAAGCCTGAACAAATCGCT 58.104 45.000 0.00 0.00 0.00 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.901552 TCTTTTTCCGCAAATCAACTTCTT 58.098 33.333 0.00 0.00 0.00 2.52
27 28 5.514274 TCTTTTTCCGCAAATCAACTTCT 57.486 34.783 0.00 0.00 0.00 2.85
40 41 6.538444 GCTCTATCAACTTCTTCTTTTTCCG 58.462 40.000 0.00 0.00 0.00 4.30
42 43 7.329717 TCTCGCTCTATCAACTTCTTCTTTTTC 59.670 37.037 0.00 0.00 0.00 2.29
43 44 7.155328 TCTCGCTCTATCAACTTCTTCTTTTT 58.845 34.615 0.00 0.00 0.00 1.94
44 45 6.692486 TCTCGCTCTATCAACTTCTTCTTTT 58.308 36.000 0.00 0.00 0.00 2.27
48 49 6.326375 TCTTTCTCGCTCTATCAACTTCTTC 58.674 40.000 0.00 0.00 0.00 2.87
56 57 4.177026 GCAACTTCTTTCTCGCTCTATCA 58.823 43.478 0.00 0.00 0.00 2.15
101 102 4.025396 GTGACAGAAGATGTTGTGTGACAG 60.025 45.833 15.44 0.00 41.72 3.51
129 130 2.903135 AGAAGAAGAGAGAGGGGTTGTG 59.097 50.000 0.00 0.00 0.00 3.33
155 156 2.152016 CTACGTGACTGTGTGAGAGGA 58.848 52.381 0.00 0.00 0.00 3.71
156 157 1.401670 GCTACGTGACTGTGTGAGAGG 60.402 57.143 0.00 0.00 0.00 3.69
167 168 1.399089 GAGAGAGAGGTGCTACGTGAC 59.601 57.143 0.00 0.00 0.00 3.67
179 180 6.708054 GTGAGAGAGAATAGGAAGAGAGAGAG 59.292 46.154 0.00 0.00 0.00 3.20
180 181 6.157820 TGTGAGAGAGAATAGGAAGAGAGAGA 59.842 42.308 0.00 0.00 0.00 3.10
237 238 4.998671 TTTCCTAGAGAGATGCTGTCAG 57.001 45.455 0.00 0.00 0.00 3.51
271 274 2.593925 TCTGGAGAAGAGTGAGCAGA 57.406 50.000 0.00 0.00 0.00 4.26
287 290 0.109597 GCACGCCTTTGACCAATCTG 60.110 55.000 0.00 0.00 0.00 2.90
332 335 0.480690 ATGGGCCAAACCACTGTACA 59.519 50.000 11.89 0.00 44.72 2.90
365 368 4.311816 CAGGATGCACTGTTCTGTTTTT 57.688 40.909 0.00 0.00 33.81 1.94
403 422 2.625790 AGAGTAATTAGCAGGAGAGGCG 59.374 50.000 0.00 0.00 36.08 5.52
407 426 3.769300 TGTGCAGAGTAATTAGCAGGAGA 59.231 43.478 0.00 0.00 37.72 3.71
420 445 1.973515 TCCTTCTGACATGTGCAGAGT 59.026 47.619 20.08 0.00 42.74 3.24
542 567 8.850033 GCTAAAGCTAATAAACGGGACTTACCC 61.850 44.444 0.00 0.00 45.83 3.69
543 568 6.018425 GCTAAAGCTAATAAACGGGACTTACC 60.018 42.308 0.00 0.00 38.21 2.85
544 569 6.941802 GCTAAAGCTAATAAACGGGACTTAC 58.058 40.000 0.00 0.00 38.21 2.34
595 626 5.128992 ACCCGTTGATGGTTTAACAATTC 57.871 39.130 0.00 0.00 29.75 2.17
607 638 2.152830 TCCCGTTTAAACCCGTTGATG 58.847 47.619 12.66 0.00 0.00 3.07
610 641 1.469703 GGATCCCGTTTAAACCCGTTG 59.530 52.381 12.66 0.00 0.00 4.10
611 642 1.825090 GGATCCCGTTTAAACCCGTT 58.175 50.000 12.66 0.00 0.00 4.44
613 644 2.386272 CGGATCCCGTTTAAACCCG 58.614 57.895 15.42 15.42 42.73 5.28
630 663 7.697691 TCTAGTAACTTTAGGGACGTAAATCG 58.302 38.462 0.00 0.00 46.00 3.34
637 670 5.998454 TCGATCTAGTAACTTTAGGGACG 57.002 43.478 0.00 0.00 0.00 4.79
638 671 7.444792 TCTGATCGATCTAGTAACTTTAGGGAC 59.555 40.741 25.02 0.00 0.00 4.46
642 675 8.346300 TGCTTCTGATCGATCTAGTAACTTTAG 58.654 37.037 25.02 10.71 0.00 1.85
683 716 1.142097 GTAGCTCCGTTGCCTCTCC 59.858 63.158 0.00 0.00 0.00 3.71
797 830 1.217511 CGGCTCACACTGATCTGCT 59.782 57.895 0.00 0.00 0.00 4.24
867 912 1.343069 GGAGGATCGATACCTTGGCT 58.657 55.000 14.92 0.00 37.93 4.75
887 932 4.734695 GCATCCTCTAAGAATTTTTGGCCG 60.735 45.833 0.00 0.00 0.00 6.13
919 964 2.568623 TTCTGCCTTCTTCCTTCACC 57.431 50.000 0.00 0.00 0.00 4.02
950 995 5.617751 GGAATTTCCTCGTGAAAGACACATG 60.618 44.000 8.25 0.00 45.74 3.21
962 1007 0.400213 TGTGCAGGGAATTTCCTCGT 59.600 50.000 14.95 0.00 36.57 4.18
979 1024 0.814010 GTGGTTCCGTGCAAGAGTGT 60.814 55.000 0.00 0.00 0.00 3.55
981 1026 0.814010 GTGTGGTTCCGTGCAAGAGT 60.814 55.000 0.00 0.00 0.00 3.24
982 1027 0.532862 AGTGTGGTTCCGTGCAAGAG 60.533 55.000 0.00 0.00 0.00 2.85
983 1028 0.753867 TAGTGTGGTTCCGTGCAAGA 59.246 50.000 0.00 0.00 0.00 3.02
984 1029 1.808411 ATAGTGTGGTTCCGTGCAAG 58.192 50.000 0.00 0.00 0.00 4.01
985 1030 3.404224 TTATAGTGTGGTTCCGTGCAA 57.596 42.857 0.00 0.00 0.00 4.08
1029 1075 0.396435 TAGGACCAGTTGTGTGCAGG 59.604 55.000 0.00 0.00 0.00 4.85
1032 1078 1.602377 GTTGTAGGACCAGTTGTGTGC 59.398 52.381 0.00 0.00 0.00 4.57
1034 1080 1.808891 GCGTTGTAGGACCAGTTGTGT 60.809 52.381 0.00 0.00 0.00 3.72
1055 1103 0.171455 TTGGGTTTGTGTGTGTTCGC 59.829 50.000 0.00 0.00 0.00 4.70
1090 1142 4.471908 TGCGCCATGCCGATCTGT 62.472 61.111 4.18 0.00 45.60 3.41
1091 1143 3.945434 GTGCGCCATGCCGATCTG 61.945 66.667 4.18 0.00 45.60 2.90
1200 1253 2.432628 CCTGCACGAACGTCTCCC 60.433 66.667 0.00 0.00 0.00 4.30
1395 1457 3.872771 TGCTGCTGACATATACACACATG 59.127 43.478 0.00 0.00 0.00 3.21
1416 1490 4.213674 GCGCAACATCACACATACATATG 58.786 43.478 0.30 0.00 39.55 1.78
1522 1596 6.910536 AGCTTTATTCTGGTTCACGATTAG 57.089 37.500 0.00 0.00 0.00 1.73
1523 1597 7.103641 AGAAGCTTTATTCTGGTTCACGATTA 58.896 34.615 0.00 0.00 41.46 1.75
1557 1631 7.297936 TCTAACACACAAGAGACTGGAATAA 57.702 36.000 0.00 0.00 0.00 1.40
1602 1686 1.134098 CGGTATCAGCCCCTTGTGATT 60.134 52.381 0.00 0.00 35.08 2.57
1656 1740 2.866065 GCCGGTGTTCCCTTCATTTTTG 60.866 50.000 1.90 0.00 0.00 2.44
1669 1753 1.905512 GACTCCTATGGCCGGTGTT 59.094 57.895 1.90 0.00 0.00 3.32
1673 1757 4.301027 GCCGACTCCTATGGCCGG 62.301 72.222 0.00 0.00 43.06 6.13
1677 1761 0.247736 GCTATGGCCGACTCCTATGG 59.752 60.000 0.00 0.00 0.00 2.74
1678 1762 3.822607 GCTATGGCCGACTCCTATG 57.177 57.895 0.00 0.00 0.00 2.23
1717 1801 2.487762 TGGTTCATCCGCTTGTGAAATC 59.512 45.455 0.00 0.00 36.23 2.17
1729 1813 2.768527 TCCAGACTGAGATGGTTCATCC 59.231 50.000 3.32 0.00 41.36 3.51
1731 1815 2.770802 CCTCCAGACTGAGATGGTTCAT 59.229 50.000 3.32 0.00 37.84 2.57
1746 1830 4.487714 TCAGCAATACCTAAACCTCCAG 57.512 45.455 0.00 0.00 0.00 3.86
1757 1841 2.338577 AGGTCAGCATCAGCAATACC 57.661 50.000 0.00 0.00 45.49 2.73
1758 1842 3.273434 TGAAGGTCAGCATCAGCAATAC 58.727 45.455 0.00 0.00 45.49 1.89
1759 1843 3.538591 CTGAAGGTCAGCATCAGCAATA 58.461 45.455 0.00 0.00 45.49 1.90
1760 1844 2.366533 CTGAAGGTCAGCATCAGCAAT 58.633 47.619 0.00 0.00 45.49 3.56
1761 1845 1.612462 CCTGAAGGTCAGCATCAGCAA 60.612 52.381 3.48 0.00 42.98 3.91
1763 1847 0.251354 TCCTGAAGGTCAGCATCAGC 59.749 55.000 3.48 0.00 42.98 4.26
1764 1848 2.093075 ACATCCTGAAGGTCAGCATCAG 60.093 50.000 1.98 1.98 42.98 2.90
1765 1849 1.911357 ACATCCTGAAGGTCAGCATCA 59.089 47.619 0.00 0.00 42.98 3.07
1766 1850 2.093288 TGACATCCTGAAGGTCAGCATC 60.093 50.000 0.00 0.00 42.98 3.91
1800 1889 2.754012 TATTTTGATCCAGGGCCCTG 57.246 50.000 40.71 40.71 43.26 4.45
1856 1945 2.082231 CACCAGAGCAGTTCTTGATGG 58.918 52.381 0.00 0.00 32.41 3.51
1917 2006 9.658799 CCAACTACTGATAGAATGAAAAGAAGA 57.341 33.333 0.00 0.00 32.23 2.87
1918 2007 9.442047 ACCAACTACTGATAGAATGAAAAGAAG 57.558 33.333 0.00 0.00 32.23 2.85
1919 2008 9.219603 CACCAACTACTGATAGAATGAAAAGAA 57.780 33.333 0.00 0.00 32.23 2.52
1920 2009 8.375506 ACACCAACTACTGATAGAATGAAAAGA 58.624 33.333 0.00 0.00 32.23 2.52
1921 2010 8.553459 ACACCAACTACTGATAGAATGAAAAG 57.447 34.615 0.00 0.00 32.23 2.27
1922 2011 9.431887 GTACACCAACTACTGATAGAATGAAAA 57.568 33.333 0.00 0.00 32.23 2.29
1923 2012 8.812972 AGTACACCAACTACTGATAGAATGAAA 58.187 33.333 0.00 0.00 32.23 2.69
1924 2013 8.251026 CAGTACACCAACTACTGATAGAATGAA 58.749 37.037 0.00 0.00 42.58 2.57
1931 2020 6.816640 GCATTTCAGTACACCAACTACTGATA 59.183 38.462 8.67 5.46 46.05 2.15
1932 2021 5.643777 GCATTTCAGTACACCAACTACTGAT 59.356 40.000 8.67 0.00 46.05 2.90
1954 2044 2.031012 CGCTGGTCCAAGTCTGCA 59.969 61.111 0.00 0.00 0.00 4.41
1955 2045 3.426568 GCGCTGGTCCAAGTCTGC 61.427 66.667 0.00 0.00 0.00 4.26
1964 2054 2.317149 ATAGGCTCCTTGCGCTGGTC 62.317 60.000 9.73 7.57 44.05 4.02
2007 2097 7.965107 GCCAGAATAGTTAAGAAACATGTTCAG 59.035 37.037 12.39 0.00 38.12 3.02
2020 2110 6.000246 TGGTGATGATGCCAGAATAGTTAA 58.000 37.500 0.00 0.00 0.00 2.01
2031 2121 4.460948 AACAGAAAATGGTGATGATGCC 57.539 40.909 0.00 0.00 0.00 4.40
2074 2167 8.058847 GGAACAGAGGGAGTATATGATAGAGAT 58.941 40.741 0.00 0.00 0.00 2.75
2078 2171 9.535170 TTTAGGAACAGAGGGAGTATATGATAG 57.465 37.037 0.00 0.00 0.00 2.08
2080 2173 8.980832 ATTTAGGAACAGAGGGAGTATATGAT 57.019 34.615 0.00 0.00 0.00 2.45
2085 2178 9.900112 ACTTATATTTAGGAACAGAGGGAGTAT 57.100 33.333 0.00 0.00 0.00 2.12
2086 2179 9.364653 GACTTATATTTAGGAACAGAGGGAGTA 57.635 37.037 0.00 0.00 0.00 2.59
2087 2180 8.068733 AGACTTATATTTAGGAACAGAGGGAGT 58.931 37.037 0.00 0.00 0.00 3.85
2088 2181 8.485578 AGACTTATATTTAGGAACAGAGGGAG 57.514 38.462 0.00 0.00 0.00 4.30
2089 2182 8.855804 AAGACTTATATTTAGGAACAGAGGGA 57.144 34.615 0.00 0.00 0.00 4.20
2090 2183 9.331282 CAAAGACTTATATTTAGGAACAGAGGG 57.669 37.037 0.00 0.00 0.00 4.30
2091 2184 9.892130 ACAAAGACTTATATTTAGGAACAGAGG 57.108 33.333 0.00 0.00 0.00 3.69
2108 2201 9.793259 TCCATAGTGAAATTTCTACAAAGACTT 57.207 29.630 18.64 2.00 0.00 3.01
2109 2202 9.220767 GTCCATAGTGAAATTTCTACAAAGACT 57.779 33.333 18.64 13.41 0.00 3.24
2110 2203 8.451748 GGTCCATAGTGAAATTTCTACAAAGAC 58.548 37.037 18.64 16.35 0.00 3.01
2111 2204 8.160765 TGGTCCATAGTGAAATTTCTACAAAGA 58.839 33.333 18.64 6.99 0.00 2.52
2112 2205 8.237267 GTGGTCCATAGTGAAATTTCTACAAAG 58.763 37.037 18.64 4.92 0.00 2.77
2113 2206 7.721842 TGTGGTCCATAGTGAAATTTCTACAAA 59.278 33.333 18.64 8.40 0.00 2.83
2114 2207 7.227873 TGTGGTCCATAGTGAAATTTCTACAA 58.772 34.615 18.64 3.14 0.00 2.41
2115 2208 6.774673 TGTGGTCCATAGTGAAATTTCTACA 58.225 36.000 18.64 4.47 0.00 2.74
2116 2209 7.865706 ATGTGGTCCATAGTGAAATTTCTAC 57.134 36.000 18.64 14.20 29.82 2.59
2118 2211 9.561069 GTATATGTGGTCCATAGTGAAATTTCT 57.439 33.333 18.64 2.61 39.36 2.52
2119 2212 8.495949 CGTATATGTGGTCCATAGTGAAATTTC 58.504 37.037 11.41 11.41 39.36 2.17
2120 2213 7.444183 CCGTATATGTGGTCCATAGTGAAATTT 59.556 37.037 0.00 0.00 39.36 1.82
2121 2214 6.934645 CCGTATATGTGGTCCATAGTGAAATT 59.065 38.462 0.00 0.00 39.36 1.82
2122 2215 6.269077 TCCGTATATGTGGTCCATAGTGAAAT 59.731 38.462 0.00 0.00 39.36 2.17
2123 2216 5.599242 TCCGTATATGTGGTCCATAGTGAAA 59.401 40.000 0.00 0.00 39.36 2.69
2124 2217 5.141910 TCCGTATATGTGGTCCATAGTGAA 58.858 41.667 0.00 0.00 39.36 3.18
2125 2218 4.732065 TCCGTATATGTGGTCCATAGTGA 58.268 43.478 0.00 0.00 39.36 3.41
2126 2219 5.047306 ACATCCGTATATGTGGTCCATAGTG 60.047 44.000 0.00 0.00 39.36 2.74
2127 2220 5.084519 ACATCCGTATATGTGGTCCATAGT 58.915 41.667 0.00 0.00 39.36 2.12
2128 2221 5.661056 ACATCCGTATATGTGGTCCATAG 57.339 43.478 0.00 0.00 39.36 2.23
2129 2222 6.666113 ACATACATCCGTATATGTGGTCCATA 59.334 38.462 0.00 0.00 39.88 2.74
2130 2223 5.483937 ACATACATCCGTATATGTGGTCCAT 59.516 40.000 0.00 0.00 39.88 3.41
2131 2224 4.836175 ACATACATCCGTATATGTGGTCCA 59.164 41.667 5.76 0.00 39.88 4.02
2132 2225 5.401531 ACATACATCCGTATATGTGGTCC 57.598 43.478 5.76 0.00 39.88 4.46
2133 2226 7.387119 TCTACATACATCCGTATATGTGGTC 57.613 40.000 7.06 0.00 41.15 4.02
2134 2227 7.630728 GCATCTACATACATCCGTATATGTGGT 60.631 40.741 7.06 6.43 41.15 4.16
2135 2228 6.697455 GCATCTACATACATCCGTATATGTGG 59.303 42.308 7.06 4.68 41.15 4.17
2136 2229 7.257722 TGCATCTACATACATCCGTATATGTG 58.742 38.462 7.06 0.00 41.15 3.21
2137 2230 7.404671 TGCATCTACATACATCCGTATATGT 57.595 36.000 2.73 2.73 43.02 2.29
2138 2231 8.877808 AATGCATCTACATACATCCGTATATG 57.122 34.615 0.00 0.00 36.11 1.78
2139 2232 9.890629 AAAATGCATCTACATACATCCGTATAT 57.109 29.630 0.00 0.00 36.11 0.86
2141 2234 9.371136 CTAAAATGCATCTACATACATCCGTAT 57.629 33.333 0.00 0.00 38.96 3.06
2142 2235 8.581578 TCTAAAATGCATCTACATACATCCGTA 58.418 33.333 0.00 0.00 0.00 4.02
2143 2236 7.441836 TCTAAAATGCATCTACATACATCCGT 58.558 34.615 0.00 0.00 0.00 4.69
2144 2237 7.600375 ACTCTAAAATGCATCTACATACATCCG 59.400 37.037 0.00 0.00 0.00 4.18
2145 2238 8.715998 CACTCTAAAATGCATCTACATACATCC 58.284 37.037 0.00 0.00 0.00 3.51
2146 2239 9.265901 ACACTCTAAAATGCATCTACATACATC 57.734 33.333 0.00 0.00 0.00 3.06
2148 2241 9.750125 CTACACTCTAAAATGCATCTACATACA 57.250 33.333 0.00 0.00 0.00 2.29
2149 2242 9.967346 TCTACACTCTAAAATGCATCTACATAC 57.033 33.333 0.00 0.00 0.00 2.39
2152 2245 9.534565 GAATCTACACTCTAAAATGCATCTACA 57.465 33.333 0.00 0.00 0.00 2.74
2153 2246 9.534565 TGAATCTACACTCTAAAATGCATCTAC 57.465 33.333 0.00 0.00 0.00 2.59
2154 2247 9.755804 CTGAATCTACACTCTAAAATGCATCTA 57.244 33.333 0.00 0.00 0.00 1.98
2155 2248 8.263640 ACTGAATCTACACTCTAAAATGCATCT 58.736 33.333 0.00 0.00 0.00 2.90
2156 2249 8.430801 ACTGAATCTACACTCTAAAATGCATC 57.569 34.615 0.00 0.00 0.00 3.91
2157 2250 8.043113 TGACTGAATCTACACTCTAAAATGCAT 58.957 33.333 0.00 0.00 0.00 3.96
2158 2251 7.386059 TGACTGAATCTACACTCTAAAATGCA 58.614 34.615 0.00 0.00 0.00 3.96
2159 2252 7.834068 TGACTGAATCTACACTCTAAAATGC 57.166 36.000 0.00 0.00 0.00 3.56
2163 2256 8.721478 GCAAAATGACTGAATCTACACTCTAAA 58.279 33.333 0.00 0.00 0.00 1.85
2164 2257 8.097038 AGCAAAATGACTGAATCTACACTCTAA 58.903 33.333 0.00 0.00 0.00 2.10
2165 2258 7.615403 AGCAAAATGACTGAATCTACACTCTA 58.385 34.615 0.00 0.00 0.00 2.43
2166 2259 6.471146 AGCAAAATGACTGAATCTACACTCT 58.529 36.000 0.00 0.00 0.00 3.24
2167 2260 6.183360 GGAGCAAAATGACTGAATCTACACTC 60.183 42.308 0.00 0.00 0.00 3.51
2168 2261 5.645497 GGAGCAAAATGACTGAATCTACACT 59.355 40.000 0.00 0.00 0.00 3.55
2169 2262 5.446473 CGGAGCAAAATGACTGAATCTACAC 60.446 44.000 0.00 0.00 0.00 2.90
2170 2263 4.631377 CGGAGCAAAATGACTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2171 2264 4.631813 ACGGAGCAAAATGACTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2172 2265 4.832248 ACGGAGCAAAATGACTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2173 2266 3.679389 ACGGAGCAAAATGACTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2174 2267 5.065218 ACATACGGAGCAAAATGACTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2175 2268 4.943705 ACATACGGAGCAAAATGACTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2176 2269 4.323417 ACATACGGAGCAAAATGACTGAA 58.677 39.130 0.00 0.00 0.00 3.02
2177 2270 3.937814 ACATACGGAGCAAAATGACTGA 58.062 40.909 0.00 0.00 0.00 3.41
2178 2271 4.870426 ACTACATACGGAGCAAAATGACTG 59.130 41.667 0.00 0.00 0.00 3.51
2179 2272 5.086104 ACTACATACGGAGCAAAATGACT 57.914 39.130 0.00 0.00 0.00 3.41
2180 2273 5.796350 AACTACATACGGAGCAAAATGAC 57.204 39.130 0.00 0.00 0.00 3.06
2181 2274 9.256477 CTATAAACTACATACGGAGCAAAATGA 57.744 33.333 0.00 0.00 0.00 2.57
2182 2275 9.042008 ACTATAAACTACATACGGAGCAAAATG 57.958 33.333 0.00 0.00 0.00 2.32
2183 2276 9.042008 CACTATAAACTACATACGGAGCAAAAT 57.958 33.333 0.00 0.00 0.00 1.82
2184 2277 7.493320 CCACTATAAACTACATACGGAGCAAAA 59.507 37.037 0.00 0.00 0.00 2.44
2185 2278 6.982141 CCACTATAAACTACATACGGAGCAAA 59.018 38.462 0.00 0.00 0.00 3.68
2186 2279 6.321945 TCCACTATAAACTACATACGGAGCAA 59.678 38.462 0.00 0.00 0.00 3.91
2187 2280 5.829391 TCCACTATAAACTACATACGGAGCA 59.171 40.000 0.00 0.00 0.00 4.26
2188 2281 6.323203 TCCACTATAAACTACATACGGAGC 57.677 41.667 0.00 0.00 0.00 4.70
2189 2282 8.794553 AGATTCCACTATAAACTACATACGGAG 58.205 37.037 0.00 0.00 0.00 4.63
2190 2283 8.701908 AGATTCCACTATAAACTACATACGGA 57.298 34.615 0.00 0.00 0.00 4.69
2191 2284 8.794553 AGAGATTCCACTATAAACTACATACGG 58.205 37.037 0.00 0.00 0.00 4.02
2218 2311 8.512138 CCTCCGTTTCAAAATATAAGTCTTTGT 58.488 33.333 0.00 0.00 32.92 2.83
2219 2312 7.968405 CCCTCCGTTTCAAAATATAAGTCTTTG 59.032 37.037 0.00 0.00 0.00 2.77
2220 2313 7.886446 TCCCTCCGTTTCAAAATATAAGTCTTT 59.114 33.333 0.00 0.00 0.00 2.52
2221 2314 7.399634 TCCCTCCGTTTCAAAATATAAGTCTT 58.600 34.615 0.00 0.00 0.00 3.01
2222 2315 6.954232 TCCCTCCGTTTCAAAATATAAGTCT 58.046 36.000 0.00 0.00 0.00 3.24
2223 2316 6.822170 ACTCCCTCCGTTTCAAAATATAAGTC 59.178 38.462 0.00 0.00 0.00 3.01
2224 2317 6.718294 ACTCCCTCCGTTTCAAAATATAAGT 58.282 36.000 0.00 0.00 0.00 2.24
2225 2318 7.042925 CGTACTCCCTCCGTTTCAAAATATAAG 60.043 40.741 0.00 0.00 0.00 1.73
2226 2319 6.757947 CGTACTCCCTCCGTTTCAAAATATAA 59.242 38.462 0.00 0.00 0.00 0.98
2227 2320 6.127366 ACGTACTCCCTCCGTTTCAAAATATA 60.127 38.462 0.00 0.00 0.00 0.86
2228 2321 5.114081 CGTACTCCCTCCGTTTCAAAATAT 58.886 41.667 0.00 0.00 0.00 1.28
2229 2322 4.021192 ACGTACTCCCTCCGTTTCAAAATA 60.021 41.667 0.00 0.00 0.00 1.40
2230 2323 3.244318 ACGTACTCCCTCCGTTTCAAAAT 60.244 43.478 0.00 0.00 0.00 1.82
2231 2324 2.102925 ACGTACTCCCTCCGTTTCAAAA 59.897 45.455 0.00 0.00 0.00 2.44
2232 2325 1.688197 ACGTACTCCCTCCGTTTCAAA 59.312 47.619 0.00 0.00 0.00 2.69
2233 2326 1.331214 ACGTACTCCCTCCGTTTCAA 58.669 50.000 0.00 0.00 0.00 2.69
2234 2327 2.086869 CTACGTACTCCCTCCGTTTCA 58.913 52.381 0.00 0.00 36.12 2.69
2235 2328 2.087646 ACTACGTACTCCCTCCGTTTC 58.912 52.381 0.00 0.00 36.12 2.78
2236 2329 2.206576 ACTACGTACTCCCTCCGTTT 57.793 50.000 0.00 0.00 36.12 3.60
2237 2330 2.501723 TCTACTACGTACTCCCTCCGTT 59.498 50.000 0.00 0.00 36.12 4.44
2238 2331 2.111384 TCTACTACGTACTCCCTCCGT 58.889 52.381 0.00 0.00 38.53 4.69
2239 2332 2.898729 TCTACTACGTACTCCCTCCG 57.101 55.000 0.00 0.00 0.00 4.63
2240 2333 3.629855 GGTTTCTACTACGTACTCCCTCC 59.370 52.174 0.00 0.00 0.00 4.30
2241 2334 4.265073 TGGTTTCTACTACGTACTCCCTC 58.735 47.826 0.00 0.00 0.00 4.30
2242 2335 4.263683 ACTGGTTTCTACTACGTACTCCCT 60.264 45.833 0.00 0.00 0.00 4.20
2243 2336 4.013050 ACTGGTTTCTACTACGTACTCCC 58.987 47.826 0.00 0.00 0.00 4.30
2244 2337 4.673841 GCACTGGTTTCTACTACGTACTCC 60.674 50.000 0.00 0.00 0.00 3.85
2245 2338 4.083110 TGCACTGGTTTCTACTACGTACTC 60.083 45.833 0.00 0.00 0.00 2.59
2246 2339 3.822735 TGCACTGGTTTCTACTACGTACT 59.177 43.478 0.00 0.00 0.00 2.73
2247 2340 4.164822 TGCACTGGTTTCTACTACGTAC 57.835 45.455 0.00 0.00 0.00 3.67
2248 2341 4.852134 TTGCACTGGTTTCTACTACGTA 57.148 40.909 0.00 0.00 0.00 3.57
2249 2342 3.738830 TTGCACTGGTTTCTACTACGT 57.261 42.857 0.00 0.00 0.00 3.57
2250 2343 5.291128 CCTATTTGCACTGGTTTCTACTACG 59.709 44.000 0.00 0.00 0.00 3.51
2251 2344 5.064834 GCCTATTTGCACTGGTTTCTACTAC 59.935 44.000 0.00 0.00 0.00 2.73
2252 2345 5.183228 GCCTATTTGCACTGGTTTCTACTA 58.817 41.667 0.00 0.00 0.00 1.82
2253 2346 4.010349 GCCTATTTGCACTGGTTTCTACT 58.990 43.478 0.00 0.00 0.00 2.57
2254 2347 3.756434 TGCCTATTTGCACTGGTTTCTAC 59.244 43.478 0.00 0.00 36.04 2.59
2255 2348 4.027674 TGCCTATTTGCACTGGTTTCTA 57.972 40.909 0.00 0.00 36.04 2.10
2256 2349 2.875296 TGCCTATTTGCACTGGTTTCT 58.125 42.857 0.00 0.00 36.04 2.52
2257 2350 3.317150 GTTGCCTATTTGCACTGGTTTC 58.683 45.455 0.00 0.00 41.88 2.78
2258 2351 2.037121 GGTTGCCTATTTGCACTGGTTT 59.963 45.455 0.00 0.00 41.88 3.27
2259 2352 1.618343 GGTTGCCTATTTGCACTGGTT 59.382 47.619 0.00 0.00 41.88 3.67
2260 2353 1.256812 GGTTGCCTATTTGCACTGGT 58.743 50.000 0.00 0.00 41.88 4.00
2261 2354 0.171007 CGGTTGCCTATTTGCACTGG 59.829 55.000 0.00 0.00 41.88 4.00
2262 2355 0.171007 CCGGTTGCCTATTTGCACTG 59.829 55.000 0.00 0.00 41.88 3.66
2263 2356 0.965363 CCCGGTTGCCTATTTGCACT 60.965 55.000 0.00 0.00 41.88 4.40
2264 2357 0.963355 TCCCGGTTGCCTATTTGCAC 60.963 55.000 0.00 0.00 41.88 4.57
2265 2358 0.679640 CTCCCGGTTGCCTATTTGCA 60.680 55.000 0.00 0.00 40.07 4.08
2266 2359 0.393808 TCTCCCGGTTGCCTATTTGC 60.394 55.000 0.00 0.00 0.00 3.68
2267 2360 1.668419 CTCTCCCGGTTGCCTATTTG 58.332 55.000 0.00 0.00 0.00 2.32
2268 2361 0.107165 GCTCTCCCGGTTGCCTATTT 60.107 55.000 0.00 0.00 0.00 1.40
2269 2362 1.271840 TGCTCTCCCGGTTGCCTATT 61.272 55.000 0.00 0.00 0.00 1.73
2270 2363 1.689233 TGCTCTCCCGGTTGCCTAT 60.689 57.895 0.00 0.00 0.00 2.57
2271 2364 2.284331 TGCTCTCCCGGTTGCCTA 60.284 61.111 0.00 0.00 0.00 3.93
2272 2365 3.710722 CTGCTCTCCCGGTTGCCT 61.711 66.667 0.00 0.00 0.00 4.75
2273 2366 4.785453 CCTGCTCTCCCGGTTGCC 62.785 72.222 0.00 0.00 0.00 4.52
2274 2367 2.656069 TACCTGCTCTCCCGGTTGC 61.656 63.158 0.00 0.00 32.36 4.17
2275 2368 1.218316 GTACCTGCTCTCCCGGTTG 59.782 63.158 0.00 0.00 32.36 3.77
2276 2369 0.544595 AAGTACCTGCTCTCCCGGTT 60.545 55.000 0.00 0.00 32.36 4.44
2277 2370 1.078710 AAGTACCTGCTCTCCCGGT 59.921 57.895 0.00 0.00 34.86 5.28
2278 2371 1.258445 ACAAGTACCTGCTCTCCCGG 61.258 60.000 0.00 0.00 0.00 5.73
2279 2372 1.134560 GTACAAGTACCTGCTCTCCCG 59.865 57.143 0.00 0.00 0.00 5.14
2280 2373 2.166664 CAGTACAAGTACCTGCTCTCCC 59.833 54.545 6.74 0.00 36.75 4.30
2281 2374 3.090037 TCAGTACAAGTACCTGCTCTCC 58.910 50.000 6.74 0.00 36.75 3.71
2282 2375 4.785511 TTCAGTACAAGTACCTGCTCTC 57.214 45.455 6.74 0.00 36.75 3.20
2283 2376 5.746990 ATTTCAGTACAAGTACCTGCTCT 57.253 39.130 6.74 0.00 36.75 4.09
2284 2377 5.122396 CCAATTTCAGTACAAGTACCTGCTC 59.878 44.000 6.74 0.00 36.75 4.26
2285 2378 5.003804 CCAATTTCAGTACAAGTACCTGCT 58.996 41.667 6.74 0.00 36.75 4.24
2286 2379 4.760204 ACCAATTTCAGTACAAGTACCTGC 59.240 41.667 6.74 0.00 36.75 4.85
2287 2380 6.877611 AACCAATTTCAGTACAAGTACCTG 57.122 37.500 6.74 5.43 36.75 4.00
2288 2381 6.238925 GCAAACCAATTTCAGTACAAGTACCT 60.239 38.462 6.74 0.00 36.75 3.08
2289 2382 5.918576 GCAAACCAATTTCAGTACAAGTACC 59.081 40.000 6.74 0.00 36.75 3.34
2290 2383 6.735130 AGCAAACCAATTTCAGTACAAGTAC 58.265 36.000 2.18 2.18 36.35 2.73
2291 2384 6.952773 AGCAAACCAATTTCAGTACAAGTA 57.047 33.333 0.00 0.00 0.00 2.24
2292 2385 5.852282 AGCAAACCAATTTCAGTACAAGT 57.148 34.783 0.00 0.00 0.00 3.16
2293 2386 8.511321 TGTATAGCAAACCAATTTCAGTACAAG 58.489 33.333 0.00 0.00 0.00 3.16
2294 2387 8.397575 TGTATAGCAAACCAATTTCAGTACAA 57.602 30.769 0.00 0.00 0.00 2.41
2295 2388 7.987750 TGTATAGCAAACCAATTTCAGTACA 57.012 32.000 0.00 0.00 0.00 2.90
2296 2389 9.855021 AAATGTATAGCAAACCAATTTCAGTAC 57.145 29.630 0.00 0.00 0.00 2.73
2298 2391 9.423061 GAAAATGTATAGCAAACCAATTTCAGT 57.577 29.630 0.00 0.00 0.00 3.41
2299 2392 9.421806 TGAAAATGTATAGCAAACCAATTTCAG 57.578 29.630 0.00 0.00 31.62 3.02
2300 2393 9.941325 ATGAAAATGTATAGCAAACCAATTTCA 57.059 25.926 10.21 10.21 37.43 2.69
2304 2397 9.941325 TGAAATGAAAATGTATAGCAAACCAAT 57.059 25.926 0.00 0.00 0.00 3.16
2305 2398 9.202273 GTGAAATGAAAATGTATAGCAAACCAA 57.798 29.630 0.00 0.00 0.00 3.67
2306 2399 8.584157 AGTGAAATGAAAATGTATAGCAAACCA 58.416 29.630 0.00 0.00 0.00 3.67
2307 2400 8.986477 AGTGAAATGAAAATGTATAGCAAACC 57.014 30.769 0.00 0.00 0.00 3.27
2315 2408 9.533831 AGGGTAAGAAGTGAAATGAAAATGTAT 57.466 29.630 0.00 0.00 0.00 2.29
2316 2409 8.792633 CAGGGTAAGAAGTGAAATGAAAATGTA 58.207 33.333 0.00 0.00 0.00 2.29
2317 2410 7.505585 TCAGGGTAAGAAGTGAAATGAAAATGT 59.494 33.333 0.00 0.00 0.00 2.71
2318 2411 7.885297 TCAGGGTAAGAAGTGAAATGAAAATG 58.115 34.615 0.00 0.00 0.00 2.32
2319 2412 8.526147 CATCAGGGTAAGAAGTGAAATGAAAAT 58.474 33.333 0.00 0.00 0.00 1.82
2320 2413 7.039784 CCATCAGGGTAAGAAGTGAAATGAAAA 60.040 37.037 0.00 0.00 0.00 2.29
2321 2414 6.434028 CCATCAGGGTAAGAAGTGAAATGAAA 59.566 38.462 0.00 0.00 0.00 2.69
2322 2415 5.945784 CCATCAGGGTAAGAAGTGAAATGAA 59.054 40.000 0.00 0.00 0.00 2.57
2323 2416 5.250543 TCCATCAGGGTAAGAAGTGAAATGA 59.749 40.000 0.00 0.00 38.11 2.57
2324 2417 5.355350 GTCCATCAGGGTAAGAAGTGAAATG 59.645 44.000 0.00 0.00 38.11 2.32
2325 2418 5.014123 TGTCCATCAGGGTAAGAAGTGAAAT 59.986 40.000 0.00 0.00 38.11 2.17
2326 2419 4.349636 TGTCCATCAGGGTAAGAAGTGAAA 59.650 41.667 0.00 0.00 38.11 2.69
2327 2420 3.907474 TGTCCATCAGGGTAAGAAGTGAA 59.093 43.478 0.00 0.00 38.11 3.18
2328 2421 3.516586 TGTCCATCAGGGTAAGAAGTGA 58.483 45.455 0.00 0.00 38.11 3.41
2329 2422 3.981071 TGTCCATCAGGGTAAGAAGTG 57.019 47.619 0.00 0.00 38.11 3.16
2330 2423 6.831664 ATATTGTCCATCAGGGTAAGAAGT 57.168 37.500 0.00 0.00 38.11 3.01
2331 2424 9.877178 GTATATATTGTCCATCAGGGTAAGAAG 57.123 37.037 0.00 0.00 38.11 2.85
2332 2425 9.387397 TGTATATATTGTCCATCAGGGTAAGAA 57.613 33.333 0.00 0.00 38.11 2.52
2333 2426 8.812972 GTGTATATATTGTCCATCAGGGTAAGA 58.187 37.037 0.00 0.00 38.11 2.10
2334 2427 8.593679 TGTGTATATATTGTCCATCAGGGTAAG 58.406 37.037 0.00 0.00 38.11 2.34
2335 2428 8.499288 TGTGTATATATTGTCCATCAGGGTAA 57.501 34.615 0.00 0.00 38.11 2.85
2336 2429 8.679344 ATGTGTATATATTGTCCATCAGGGTA 57.321 34.615 0.00 0.00 38.11 3.69
2337 2430 7.311297 GGATGTGTATATATTGTCCATCAGGGT 60.311 40.741 12.49 0.00 38.11 4.34
2338 2431 7.050377 GGATGTGTATATATTGTCCATCAGGG 58.950 42.308 12.49 0.00 34.83 4.45
2339 2432 7.855375 AGGATGTGTATATATTGTCCATCAGG 58.145 38.462 12.49 0.00 31.21 3.86
2342 2435 9.988815 GGATAGGATGTGTATATATTGTCCATC 57.011 37.037 0.00 0.00 0.00 3.51
2343 2436 9.506042 TGGATAGGATGTGTATATATTGTCCAT 57.494 33.333 0.00 0.00 0.00 3.41
2344 2437 8.909423 TGGATAGGATGTGTATATATTGTCCA 57.091 34.615 0.00 0.00 0.00 4.02
2362 2455 0.399949 TAGGTGGCACCCTGGATAGG 60.400 60.000 32.30 0.00 39.75 2.57
2363 2456 1.507140 TTAGGTGGCACCCTGGATAG 58.493 55.000 32.30 0.00 39.75 2.08
2364 2457 2.206322 ATTAGGTGGCACCCTGGATA 57.794 50.000 32.30 15.43 39.75 2.59
2365 2458 1.215423 GAATTAGGTGGCACCCTGGAT 59.785 52.381 32.30 16.53 39.75 3.41
2366 2459 0.623723 GAATTAGGTGGCACCCTGGA 59.376 55.000 32.30 16.26 39.75 3.86
2367 2460 0.625849 AGAATTAGGTGGCACCCTGG 59.374 55.000 32.30 0.00 39.75 4.45
2368 2461 1.755179 CAGAATTAGGTGGCACCCTG 58.245 55.000 32.30 25.58 39.75 4.45
2369 2462 0.034089 GCAGAATTAGGTGGCACCCT 60.034 55.000 32.30 18.99 39.75 4.34
2370 2463 0.323360 TGCAGAATTAGGTGGCACCC 60.323 55.000 32.30 16.93 39.75 4.61
2371 2464 1.544724 TTGCAGAATTAGGTGGCACC 58.455 50.000 29.32 29.32 38.99 5.01
2372 2465 2.295909 TGTTTGCAGAATTAGGTGGCAC 59.704 45.455 9.70 9.70 33.66 5.01
2373 2466 2.591923 TGTTTGCAGAATTAGGTGGCA 58.408 42.857 0.00 0.00 0.00 4.92
2374 2467 3.658757 TTGTTTGCAGAATTAGGTGGC 57.341 42.857 0.00 0.00 0.00 5.01
2375 2468 8.776376 AAATTATTGTTTGCAGAATTAGGTGG 57.224 30.769 0.00 0.00 0.00 4.61
2377 2470 9.435688 GGAAAATTATTGTTTGCAGAATTAGGT 57.564 29.630 0.00 0.00 0.00 3.08
2378 2471 9.434420 TGGAAAATTATTGTTTGCAGAATTAGG 57.566 29.630 0.00 0.00 32.22 2.69
2381 2474 9.287373 ACATGGAAAATTATTGTTTGCAGAATT 57.713 25.926 0.00 0.00 39.28 2.17
2382 2475 8.851541 ACATGGAAAATTATTGTTTGCAGAAT 57.148 26.923 0.00 0.00 39.28 2.40
2383 2476 8.674263 AACATGGAAAATTATTGTTTGCAGAA 57.326 26.923 0.00 0.00 39.28 3.02
2384 2477 8.149647 AGAACATGGAAAATTATTGTTTGCAGA 58.850 29.630 0.00 0.00 39.28 4.26
2385 2478 8.314143 AGAACATGGAAAATTATTGTTTGCAG 57.686 30.769 0.00 0.00 39.28 4.41
2386 2479 9.202273 GTAGAACATGGAAAATTATTGTTTGCA 57.798 29.630 0.00 0.00 40.05 4.08
2387 2480 8.655970 GGTAGAACATGGAAAATTATTGTTTGC 58.344 33.333 0.00 0.00 31.09 3.68
2388 2481 8.859156 CGGTAGAACATGGAAAATTATTGTTTG 58.141 33.333 0.00 0.00 31.09 2.93
2389 2482 7.544217 GCGGTAGAACATGGAAAATTATTGTTT 59.456 33.333 0.00 0.00 31.09 2.83
2390 2483 7.033185 GCGGTAGAACATGGAAAATTATTGTT 58.967 34.615 0.00 0.00 33.47 2.83
2391 2484 6.151985 TGCGGTAGAACATGGAAAATTATTGT 59.848 34.615 0.00 0.00 0.00 2.71
2392 2485 6.559810 TGCGGTAGAACATGGAAAATTATTG 58.440 36.000 0.00 0.00 0.00 1.90
2393 2486 6.183360 CCTGCGGTAGAACATGGAAAATTATT 60.183 38.462 0.00 0.00 0.00 1.40
2394 2487 5.299279 CCTGCGGTAGAACATGGAAAATTAT 59.701 40.000 0.00 0.00 0.00 1.28
2395 2488 4.638421 CCTGCGGTAGAACATGGAAAATTA 59.362 41.667 0.00 0.00 0.00 1.40
2396 2489 3.443681 CCTGCGGTAGAACATGGAAAATT 59.556 43.478 0.00 0.00 0.00 1.82
2397 2490 3.016736 CCTGCGGTAGAACATGGAAAAT 58.983 45.455 0.00 0.00 0.00 1.82
2398 2491 2.432444 CCTGCGGTAGAACATGGAAAA 58.568 47.619 0.00 0.00 0.00 2.29
2399 2492 1.948611 GCCTGCGGTAGAACATGGAAA 60.949 52.381 0.00 0.00 0.00 3.13
2400 2493 0.392461 GCCTGCGGTAGAACATGGAA 60.392 55.000 0.00 0.00 0.00 3.53
2401 2494 1.220749 GCCTGCGGTAGAACATGGA 59.779 57.895 0.00 0.00 0.00 3.41
2402 2495 1.819632 GGCCTGCGGTAGAACATGG 60.820 63.158 0.00 0.00 0.00 3.66
2403 2496 1.819632 GGGCCTGCGGTAGAACATG 60.820 63.158 0.84 0.00 0.00 3.21
2404 2497 2.590092 GGGCCTGCGGTAGAACAT 59.410 61.111 0.84 0.00 0.00 2.71
2405 2498 4.077184 CGGGCCTGCGGTAGAACA 62.077 66.667 0.84 0.00 0.00 3.18
2415 2508 1.031571 TTATTGAAGCTGCGGGCCTG 61.032 55.000 7.41 7.41 43.05 4.85
2416 2509 0.749454 CTTATTGAAGCTGCGGGCCT 60.749 55.000 0.84 0.00 43.05 5.19
2417 2510 0.748005 TCTTATTGAAGCTGCGGGCC 60.748 55.000 0.00 0.00 43.05 5.80
2418 2511 0.659957 CTCTTATTGAAGCTGCGGGC 59.340 55.000 0.00 0.00 42.19 6.13
2419 2512 2.315925 TCTCTTATTGAAGCTGCGGG 57.684 50.000 0.00 0.00 32.21 6.13
2420 2513 3.940657 CTTCTCTTATTGAAGCTGCGG 57.059 47.619 0.00 0.00 35.21 5.69
2428 2521 9.725019 TGTATTCTTTTGAGCTTCTCTTATTGA 57.275 29.630 0.00 0.00 0.00 2.57
2429 2522 9.766277 GTGTATTCTTTTGAGCTTCTCTTATTG 57.234 33.333 0.00 0.00 0.00 1.90
2430 2523 9.507329 TGTGTATTCTTTTGAGCTTCTCTTATT 57.493 29.630 0.00 0.00 0.00 1.40
2431 2524 9.160496 CTGTGTATTCTTTTGAGCTTCTCTTAT 57.840 33.333 0.00 0.00 0.00 1.73
2432 2525 8.367911 TCTGTGTATTCTTTTGAGCTTCTCTTA 58.632 33.333 0.00 0.00 0.00 2.10
2433 2526 7.220030 TCTGTGTATTCTTTTGAGCTTCTCTT 58.780 34.615 0.00 0.00 0.00 2.85
2434 2527 6.763355 TCTGTGTATTCTTTTGAGCTTCTCT 58.237 36.000 0.00 0.00 0.00 3.10
2435 2528 7.462731 CATCTGTGTATTCTTTTGAGCTTCTC 58.537 38.462 0.00 0.00 0.00 2.87
2436 2529 6.128063 GCATCTGTGTATTCTTTTGAGCTTCT 60.128 38.462 0.00 0.00 0.00 2.85
2437 2530 6.026513 GCATCTGTGTATTCTTTTGAGCTTC 58.973 40.000 0.00 0.00 0.00 3.86
2438 2531 5.474532 TGCATCTGTGTATTCTTTTGAGCTT 59.525 36.000 0.00 0.00 0.00 3.74
2439 2532 5.005740 TGCATCTGTGTATTCTTTTGAGCT 58.994 37.500 0.00 0.00 0.00 4.09
2440 2533 5.300969 TGCATCTGTGTATTCTTTTGAGC 57.699 39.130 0.00 0.00 0.00 4.26
2441 2534 7.201410 GCAAATGCATCTGTGTATTCTTTTGAG 60.201 37.037 0.00 0.00 39.34 3.02
2442 2535 6.587226 GCAAATGCATCTGTGTATTCTTTTGA 59.413 34.615 0.00 0.00 39.34 2.69
2443 2536 6.758149 GCAAATGCATCTGTGTATTCTTTTG 58.242 36.000 0.00 0.00 39.34 2.44
2444 2537 6.956299 GCAAATGCATCTGTGTATTCTTTT 57.044 33.333 0.00 0.00 39.34 2.27
2456 2549 9.095058 ATGCTCTCCATATTTGCAAATGCATCT 62.095 37.037 30.43 14.44 40.90 2.90
2457 2550 7.014615 ATGCTCTCCATATTTGCAAATGCATC 61.015 38.462 30.43 13.49 40.90 3.91
2458 2551 5.221641 ATGCTCTCCATATTTGCAAATGCAT 60.222 36.000 30.43 27.84 40.90 3.96
2459 2552 4.100344 ATGCTCTCCATATTTGCAAATGCA 59.900 37.500 30.43 27.07 40.07 3.96
2460 2553 4.049546 TGCTCTCCATATTTGCAAATGC 57.950 40.909 30.43 23.12 42.50 3.56
2461 2554 8.651391 TTTTATGCTCTCCATATTTGCAAATG 57.349 30.769 30.43 18.41 36.35 2.32
2462 2555 8.698210 TCTTTTATGCTCTCCATATTTGCAAAT 58.302 29.630 26.72 26.72 36.35 2.32
2463 2556 7.975616 GTCTTTTATGCTCTCCATATTTGCAAA 59.024 33.333 15.44 15.44 36.35 3.68
2464 2557 7.340232 AGTCTTTTATGCTCTCCATATTTGCAA 59.660 33.333 0.00 0.00 36.35 4.08
2465 2558 6.830324 AGTCTTTTATGCTCTCCATATTTGCA 59.170 34.615 0.00 0.00 36.35 4.08
2466 2559 7.012704 TGAGTCTTTTATGCTCTCCATATTTGC 59.987 37.037 0.00 0.00 36.35 3.68
2467 2560 8.442632 TGAGTCTTTTATGCTCTCCATATTTG 57.557 34.615 0.00 0.00 36.35 2.32
2468 2561 8.270744 ACTGAGTCTTTTATGCTCTCCATATTT 58.729 33.333 0.00 0.00 36.35 1.40
2469 2562 7.800092 ACTGAGTCTTTTATGCTCTCCATATT 58.200 34.615 0.00 0.00 36.35 1.28
2470 2563 7.372260 ACTGAGTCTTTTATGCTCTCCATAT 57.628 36.000 0.00 0.00 36.35 1.78
2471 2564 6.798427 ACTGAGTCTTTTATGCTCTCCATA 57.202 37.500 0.00 0.00 35.34 2.74
2472 2565 5.690464 ACTGAGTCTTTTATGCTCTCCAT 57.310 39.130 0.00 0.00 37.97 3.41
2473 2566 6.798427 ATACTGAGTCTTTTATGCTCTCCA 57.202 37.500 0.00 0.00 0.00 3.86
2474 2567 9.771534 ATAAATACTGAGTCTTTTATGCTCTCC 57.228 33.333 10.74 0.00 0.00 3.71
2497 2590 9.677567 GCTTGAACTCATGTTTGAAAGTTATAA 57.322 29.630 0.00 0.00 36.39 0.98
2498 2591 8.296713 GGCTTGAACTCATGTTTGAAAGTTATA 58.703 33.333 0.00 0.00 36.39 0.98
2499 2592 7.014615 AGGCTTGAACTCATGTTTGAAAGTTAT 59.985 33.333 0.00 0.00 36.39 1.89
2500 2593 6.321181 AGGCTTGAACTCATGTTTGAAAGTTA 59.679 34.615 0.00 0.00 36.39 2.24
2501 2594 5.127682 AGGCTTGAACTCATGTTTGAAAGTT 59.872 36.000 0.00 0.00 36.39 2.66
2502 2595 4.646492 AGGCTTGAACTCATGTTTGAAAGT 59.354 37.500 0.00 0.00 36.39 2.66
2503 2596 4.980434 CAGGCTTGAACTCATGTTTGAAAG 59.020 41.667 0.00 0.00 36.39 2.62
2504 2597 4.644234 TCAGGCTTGAACTCATGTTTGAAA 59.356 37.500 0.00 0.00 36.39 2.69
2505 2598 4.206375 TCAGGCTTGAACTCATGTTTGAA 58.794 39.130 0.00 0.00 36.39 2.69
2506 2599 3.819368 TCAGGCTTGAACTCATGTTTGA 58.181 40.909 0.00 0.00 36.39 2.69
2507 2600 4.572985 TTCAGGCTTGAACTCATGTTTG 57.427 40.909 7.24 0.00 38.37 2.93
2517 2610 2.229792 AGCGATTTGTTCAGGCTTGAA 58.770 42.857 7.24 7.24 40.92 2.69
2518 2611 1.896220 AGCGATTTGTTCAGGCTTGA 58.104 45.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.