Multiple sequence alignment - TraesCS3D01G411100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G411100 chr3D 100.000 4134 0 0 1 4134 523785491 523781358 0.000000e+00 7635.0
1 TraesCS3D01G411100 chr3D 97.891 806 17 0 3329 4134 562446586 562445781 0.000000e+00 1395.0
2 TraesCS3D01G411100 chr3D 97.767 806 18 0 3329 4134 371906681 371907486 0.000000e+00 1389.0
3 TraesCS3D01G411100 chr3D 91.626 203 13 3 143 343 523802160 523801960 1.130000e-70 278.0
4 TraesCS3D01G411100 chr3D 92.353 170 12 1 367 535 551595084 551594915 1.480000e-59 241.0
5 TraesCS3D01G411100 chr3D 92.908 141 10 0 533 673 537154842 537154702 5.420000e-49 206.0
6 TraesCS3D01G411100 chr3D 92.308 143 11 0 533 675 459077409 459077267 1.950000e-48 204.0
7 TraesCS3D01G411100 chr3D 96.154 52 1 1 2046 2097 607526917 607526867 2.650000e-12 84.2
8 TraesCS3D01G411100 chr3D 95.349 43 0 2 1932 1974 1138615 1138655 2.670000e-07 67.6
9 TraesCS3D01G411100 chr3B 87.072 2630 160 72 710 3229 690878840 690876281 0.000000e+00 2808.0
10 TraesCS3D01G411100 chr3B 91.022 323 29 0 1 323 690879433 690879111 1.760000e-118 436.0
11 TraesCS3D01G411100 chr3B 91.584 202 14 2 143 343 691264020 691263821 4.070000e-70 276.0
12 TraesCS3D01G411100 chr3B 88.889 45 5 0 322 366 690878949 690878905 5.770000e-04 56.5
13 TraesCS3D01G411100 chr7D 97.891 806 17 0 3329 4134 150929668 150930473 0.000000e+00 1395.0
14 TraesCS3D01G411100 chr7D 96.154 52 1 1 2046 2097 451519031 451518981 2.650000e-12 84.2
15 TraesCS3D01G411100 chr7D 96.154 52 1 1 2046 2097 603117597 603117547 2.650000e-12 84.2
16 TraesCS3D01G411100 chr5D 97.891 806 17 0 3329 4134 539163958 539163153 0.000000e+00 1395.0
17 TraesCS3D01G411100 chr5D 97.767 806 18 0 3329 4134 51796121 51796926 0.000000e+00 1389.0
18 TraesCS3D01G411100 chr5D 92.529 174 9 4 365 536 508528169 508528340 3.190000e-61 246.0
19 TraesCS3D01G411100 chr5D 92.308 143 11 0 533 675 299406154 299406012 1.950000e-48 204.0
20 TraesCS3D01G411100 chr4D 97.891 806 17 0 3329 4134 51977988 51977183 0.000000e+00 1395.0
21 TraesCS3D01G411100 chr4D 80.000 365 45 18 1 348 20430765 20431118 1.150000e-60 244.0
22 TraesCS3D01G411100 chr4D 96.154 52 1 1 2046 2097 298295278 298295328 2.650000e-12 84.2
23 TraesCS3D01G411100 chr6D 97.767 806 18 0 3329 4134 179981102 179981907 0.000000e+00 1389.0
24 TraesCS3D01G411100 chr6D 97.767 806 18 0 3329 4134 355038339 355037534 0.000000e+00 1389.0
25 TraesCS3D01G411100 chr6D 77.348 362 49 25 1 343 433634381 433634034 2.540000e-42 183.0
26 TraesCS3D01G411100 chr1D 97.767 806 18 0 3329 4134 483997013 483996208 0.000000e+00 1389.0
27 TraesCS3D01G411100 chr1D 79.167 336 48 16 1 321 356941920 356942248 3.240000e-51 213.0
28 TraesCS3D01G411100 chr1D 92.908 141 10 0 533 673 463381926 463382066 5.420000e-49 206.0
29 TraesCS3D01G411100 chr1D 85.955 178 22 3 499 673 302880505 302880682 1.960000e-43 187.0
30 TraesCS3D01G411100 chr1D 96.154 52 1 1 2046 2097 132657845 132657795 2.650000e-12 84.2
31 TraesCS3D01G411100 chr3A 86.898 1038 67 22 1478 2467 658702857 658701841 0.000000e+00 1099.0
32 TraesCS3D01G411100 chr3A 95.463 529 13 3 2798 3325 658701521 658701003 0.000000e+00 833.0
33 TraesCS3D01G411100 chr3A 87.958 382 16 6 746 1098 658703476 658703096 1.370000e-114 424.0
34 TraesCS3D01G411100 chr3A 95.062 243 8 1 1189 1427 658703099 658702857 3.020000e-101 379.0
35 TraesCS3D01G411100 chr3A 90.169 295 19 3 2510 2801 658701839 658701552 3.900000e-100 375.0
36 TraesCS3D01G411100 chr3A 93.023 43 1 2 1932 1974 8146922 8146882 1.240000e-05 62.1
37 TraesCS3D01G411100 chr2D 91.967 361 29 0 2800 3160 243140263 243140623 1.330000e-139 507.0
38 TraesCS3D01G411100 chr2D 88.476 269 25 3 2341 2607 243120825 243121089 1.850000e-83 320.0
39 TraesCS3D01G411100 chr2D 92.398 171 12 1 366 535 412252732 412252902 4.130000e-60 243.0
40 TraesCS3D01G411100 chr2D 93.007 143 10 0 533 675 87407385 87407527 4.190000e-50 209.0
41 TraesCS3D01G411100 chr2D 82.258 248 22 12 984 1227 243115742 243115971 1.170000e-45 195.0
42 TraesCS3D01G411100 chr2D 82.323 198 17 7 2612 2801 243140040 243140227 5.530000e-34 156.0
43 TraesCS3D01G411100 chr4B 94.220 173 8 2 361 532 111706938 111706767 3.170000e-66 263.0
44 TraesCS3D01G411100 chr4B 78.292 281 44 14 1 269 142041210 142040935 9.190000e-37 165.0
45 TraesCS3D01G411100 chr2B 94.220 173 8 2 361 532 463024251 463024080 3.170000e-66 263.0
46 TraesCS3D01G411100 chr2B 92.063 189 9 6 361 547 755447980 755448164 1.140000e-65 261.0
47 TraesCS3D01G411100 chr7A 92.899 169 11 1 367 534 498582730 498582898 1.150000e-60 244.0
48 TraesCS3D01G411100 chr1B 90.476 189 12 6 361 547 538624906 538625090 1.150000e-60 244.0
49 TraesCS3D01G411100 chr1B 78.652 356 52 20 1 343 467901341 467901685 9.000000e-52 215.0
50 TraesCS3D01G411100 chr1B 92.908 141 10 0 533 673 638797530 638797390 5.420000e-49 206.0
51 TraesCS3D01G411100 chr1B 81.560 141 13 5 2046 2173 623404462 623404322 2.030000e-18 104.0
52 TraesCS3D01G411100 chr6A 92.814 167 10 2 369 533 58764560 58764726 1.480000e-59 241.0
53 TraesCS3D01G411100 chr6A 92.958 142 9 1 533 674 113538107 113537967 5.420000e-49 206.0
54 TraesCS3D01G411100 chr4A 92.908 141 10 0 533 673 517406492 517406632 5.420000e-49 206.0
55 TraesCS3D01G411100 chrUn 77.976 336 51 16 1 321 240149297 240149624 5.460000e-44 189.0
56 TraesCS3D01G411100 chrUn 77.976 336 51 17 1 321 263945348 263945021 5.460000e-44 189.0
57 TraesCS3D01G411100 chrUn 96.154 52 1 1 2046 2097 96170689 96170639 2.650000e-12 84.2
58 TraesCS3D01G411100 chrUn 96.154 52 1 1 2046 2097 457931638 457931588 2.650000e-12 84.2
59 TraesCS3D01G411100 chr6B 77.448 337 48 20 1 321 297295913 297295589 4.250000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G411100 chr3D 523781358 523785491 4133 True 7635.000000 7635 100.000000 1 4134 1 chr3D.!!$R2 4133
1 TraesCS3D01G411100 chr3D 562445781 562446586 805 True 1395.000000 1395 97.891000 3329 4134 1 chr3D.!!$R6 805
2 TraesCS3D01G411100 chr3D 371906681 371907486 805 False 1389.000000 1389 97.767000 3329 4134 1 chr3D.!!$F2 805
3 TraesCS3D01G411100 chr3B 690876281 690879433 3152 True 1100.166667 2808 88.994333 1 3229 3 chr3B.!!$R2 3228
4 TraesCS3D01G411100 chr7D 150929668 150930473 805 False 1395.000000 1395 97.891000 3329 4134 1 chr7D.!!$F1 805
5 TraesCS3D01G411100 chr5D 539163153 539163958 805 True 1395.000000 1395 97.891000 3329 4134 1 chr5D.!!$R2 805
6 TraesCS3D01G411100 chr5D 51796121 51796926 805 False 1389.000000 1389 97.767000 3329 4134 1 chr5D.!!$F1 805
7 TraesCS3D01G411100 chr4D 51977183 51977988 805 True 1395.000000 1395 97.891000 3329 4134 1 chr4D.!!$R1 805
8 TraesCS3D01G411100 chr6D 179981102 179981907 805 False 1389.000000 1389 97.767000 3329 4134 1 chr6D.!!$F1 805
9 TraesCS3D01G411100 chr6D 355037534 355038339 805 True 1389.000000 1389 97.767000 3329 4134 1 chr6D.!!$R1 805
10 TraesCS3D01G411100 chr1D 483996208 483997013 805 True 1389.000000 1389 97.767000 3329 4134 1 chr1D.!!$R2 805
11 TraesCS3D01G411100 chr3A 658701003 658703476 2473 True 622.000000 1099 91.110000 746 3325 5 chr3A.!!$R2 2579
12 TraesCS3D01G411100 chr2D 243140040 243140623 583 False 331.500000 507 87.145000 2612 3160 2 chr2D.!!$F5 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
306 307 0.039618 TGTTTGGGCAAGGGGAGATC 59.960 55.0 0.00 0.00 0.00 2.75 F
386 387 0.105709 AAGGGGGTGTTTGGTTCCAG 60.106 55.0 0.00 0.00 0.00 3.86 F
451 452 0.105709 CAGGGTGGGACTTTTTGGGT 60.106 55.0 0.00 0.00 0.00 4.51 F
452 453 0.187606 AGGGTGGGACTTTTTGGGTC 59.812 55.0 0.00 0.00 0.00 4.46 F
453 454 0.187606 GGGTGGGACTTTTTGGGTCT 59.812 55.0 0.00 0.00 34.47 3.85 F
708 803 0.322008 GTCCCACTTGAGCCAAGGAG 60.322 60.0 16.21 9.81 44.81 3.69 F
1146 1288 0.524392 GCCTGATCTCGTGAGTCGTG 60.524 60.0 0.00 0.00 40.80 4.35 F
1529 1677 0.531974 TTGTGGCCGTCAGTTCAGTC 60.532 55.0 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2157 2370 0.398522 AGCGGGTGATGGAGGTGATA 60.399 55.000 0.00 0.0 0.00 2.15 R
2447 2718 7.071447 TCCCAATAATGCATGATTTCAAGGAAT 59.929 33.333 6.54 0.0 0.00 3.01 R
2469 2740 7.060421 ACTTGAGAACTGTTTAGAAAATCCCA 58.940 34.615 0.00 0.0 0.00 4.37 R
2470 2741 7.228706 TGACTTGAGAACTGTTTAGAAAATCCC 59.771 37.037 0.00 0.0 0.00 3.85 R
2476 2747 5.006358 GCGTTGACTTGAGAACTGTTTAGAA 59.994 40.000 0.00 0.0 0.00 2.10 R
2623 2897 0.183492 AGGGACACAAGAAGCAGCAA 59.817 50.000 0.00 0.0 0.00 3.91 R
2670 2954 1.200020 AGCAATAAGGTGAAAGCGCAC 59.800 47.619 11.47 0.0 40.95 5.34 R
3179 3505 0.106569 ATGCATGATCCGCCCTGAAA 60.107 50.000 0.00 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 3.313526 CCACAAGGCATAATTCCTCTTCG 59.686 47.826 0.00 0.00 32.45 3.79
51 52 4.034510 CACAAGGCATAATTCCTCTTCGAC 59.965 45.833 0.00 0.00 32.45 4.20
52 53 3.477210 AGGCATAATTCCTCTTCGACC 57.523 47.619 0.00 0.00 0.00 4.79
94 95 2.940410 GACGAGTCTCGATCTCTTCCTT 59.060 50.000 28.33 1.64 43.74 3.36
99 100 5.576447 AGTCTCGATCTCTTCCTTTTCTC 57.424 43.478 0.00 0.00 0.00 2.87
100 101 4.401202 AGTCTCGATCTCTTCCTTTTCTCC 59.599 45.833 0.00 0.00 0.00 3.71
116 117 0.523966 CTCCGTTGTTCGCTCTCTCT 59.476 55.000 0.00 0.00 38.35 3.10
120 121 1.423395 GTTGTTCGCTCTCTCTGGTG 58.577 55.000 0.00 0.00 0.00 4.17
132 133 0.737715 CTCTGGTGGTTCTAGCGTGC 60.738 60.000 0.00 0.00 0.00 5.34
148 149 1.201661 CGTGCGTGATAACGTGTTCTG 60.202 52.381 4.14 0.00 35.13 3.02
183 184 8.072567 GGAAAACTTCTATTGATCGATCATTGG 58.927 37.037 27.75 23.93 36.56 3.16
194 195 7.482654 TGATCGATCATTGGAAAGTACAATC 57.517 36.000 23.99 0.00 36.47 2.67
203 204 9.494271 TCATTGGAAAGTACAATCTATATGCTC 57.506 33.333 0.00 0.00 36.47 4.26
206 207 6.266786 TGGAAAGTACAATCTATATGCTCCGA 59.733 38.462 0.00 0.00 0.00 4.55
223 224 1.530031 CCGAAGAGACACGACGATCAG 60.530 57.143 0.00 0.00 0.00 2.90
233 234 0.385348 CGACGATCAGAGGAGATGCG 60.385 60.000 0.00 0.00 0.00 4.73
238 239 0.753479 ATCAGAGGAGATGCGTCGGT 60.753 55.000 0.00 0.00 36.53 4.69
247 248 2.907897 GATGCGTCGGTTCCAGGGAG 62.908 65.000 0.00 0.00 0.00 4.30
287 288 2.482333 CGGGAGGAATCGCTCGACT 61.482 63.158 0.00 0.00 39.02 4.18
296 297 2.449031 ATCGCTCGACTGTTTGGGCA 62.449 55.000 6.65 0.00 0.00 5.36
301 302 2.268076 CGACTGTTTGGGCAAGGGG 61.268 63.158 0.00 0.00 0.00 4.79
306 307 0.039618 TGTTTGGGCAAGGGGAGATC 59.960 55.000 0.00 0.00 0.00 2.75
372 373 8.373220 ACTACATTCGTTCCTAAATATAAGGGG 58.627 37.037 4.60 0.00 34.66 4.79
373 374 6.540083 ACATTCGTTCCTAAATATAAGGGGG 58.460 40.000 4.60 0.00 34.66 5.40
374 375 6.102174 ACATTCGTTCCTAAATATAAGGGGGT 59.898 38.462 4.60 0.00 34.66 4.95
375 376 5.556006 TCGTTCCTAAATATAAGGGGGTG 57.444 43.478 4.60 0.00 34.66 4.61
376 377 4.970640 TCGTTCCTAAATATAAGGGGGTGT 59.029 41.667 4.60 0.00 34.66 4.16
377 378 5.429435 TCGTTCCTAAATATAAGGGGGTGTT 59.571 40.000 4.60 0.00 34.66 3.32
378 379 6.069498 TCGTTCCTAAATATAAGGGGGTGTTT 60.069 38.462 4.60 0.00 34.66 2.83
379 380 6.038936 CGTTCCTAAATATAAGGGGGTGTTTG 59.961 42.308 4.60 0.00 34.66 2.93
380 381 6.020881 TCCTAAATATAAGGGGGTGTTTGG 57.979 41.667 4.60 0.00 34.66 3.28
381 382 5.496902 TCCTAAATATAAGGGGGTGTTTGGT 59.503 40.000 4.60 0.00 34.66 3.67
382 383 6.010560 TCCTAAATATAAGGGGGTGTTTGGTT 60.011 38.462 4.60 0.00 34.66 3.67
383 384 6.322969 CCTAAATATAAGGGGGTGTTTGGTTC 59.677 42.308 0.00 0.00 0.00 3.62
384 385 2.615986 ATAAGGGGGTGTTTGGTTCC 57.384 50.000 0.00 0.00 0.00 3.62
385 386 1.232909 TAAGGGGGTGTTTGGTTCCA 58.767 50.000 0.00 0.00 0.00 3.53
386 387 0.105709 AAGGGGGTGTTTGGTTCCAG 60.106 55.000 0.00 0.00 0.00 3.86
387 388 1.533033 GGGGGTGTTTGGTTCCAGG 60.533 63.158 0.00 0.00 0.00 4.45
388 389 1.533033 GGGGTGTTTGGTTCCAGGG 60.533 63.158 0.00 0.00 0.00 4.45
389 390 1.539665 GGGTGTTTGGTTCCAGGGA 59.460 57.895 0.00 0.00 0.00 4.20
390 391 0.826256 GGGTGTTTGGTTCCAGGGAC 60.826 60.000 0.00 0.00 0.00 4.46
391 392 0.185175 GGTGTTTGGTTCCAGGGACT 59.815 55.000 0.00 0.00 43.88 3.85
392 393 1.411074 GGTGTTTGGTTCCAGGGACTT 60.411 52.381 0.00 0.00 34.60 3.01
393 394 2.384828 GTGTTTGGTTCCAGGGACTTT 58.615 47.619 0.00 0.00 34.60 2.66
394 395 2.764010 GTGTTTGGTTCCAGGGACTTTT 59.236 45.455 0.00 0.00 34.60 2.27
395 396 3.196901 GTGTTTGGTTCCAGGGACTTTTT 59.803 43.478 0.00 0.00 34.60 1.94
419 420 7.797038 TTGTGTTAGAACTAGAAAAAGTCCC 57.203 36.000 0.00 0.00 0.00 4.46
420 421 7.133133 TGTGTTAGAACTAGAAAAAGTCCCT 57.867 36.000 0.00 0.00 0.00 4.20
421 422 8.253867 TGTGTTAGAACTAGAAAAAGTCCCTA 57.746 34.615 0.00 0.00 0.00 3.53
422 423 8.365647 TGTGTTAGAACTAGAAAAAGTCCCTAG 58.634 37.037 0.00 0.00 36.76 3.02
423 424 7.331440 GTGTTAGAACTAGAAAAAGTCCCTAGC 59.669 40.741 0.00 0.00 34.70 3.42
424 425 7.015877 TGTTAGAACTAGAAAAAGTCCCTAGCA 59.984 37.037 0.00 0.00 34.70 3.49
425 426 6.435292 AGAACTAGAAAAAGTCCCTAGCAA 57.565 37.500 0.00 0.00 34.70 3.91
426 427 6.838382 AGAACTAGAAAAAGTCCCTAGCAAA 58.162 36.000 0.00 0.00 34.70 3.68
427 428 6.711194 AGAACTAGAAAAAGTCCCTAGCAAAC 59.289 38.462 0.00 0.00 34.70 2.93
428 429 5.314529 ACTAGAAAAAGTCCCTAGCAAACC 58.685 41.667 0.00 0.00 34.70 3.27
429 430 4.178956 AGAAAAAGTCCCTAGCAAACCA 57.821 40.909 0.00 0.00 0.00 3.67
430 431 4.542697 AGAAAAAGTCCCTAGCAAACCAA 58.457 39.130 0.00 0.00 0.00 3.67
431 432 4.959839 AGAAAAAGTCCCTAGCAAACCAAA 59.040 37.500 0.00 0.00 0.00 3.28
432 433 4.665833 AAAAGTCCCTAGCAAACCAAAC 57.334 40.909 0.00 0.00 0.00 2.93
433 434 3.306472 AAGTCCCTAGCAAACCAAACA 57.694 42.857 0.00 0.00 0.00 2.83
434 435 2.863809 AGTCCCTAGCAAACCAAACAG 58.136 47.619 0.00 0.00 0.00 3.16
435 436 1.886542 GTCCCTAGCAAACCAAACAGG 59.113 52.381 0.00 0.00 45.67 4.00
436 437 1.203001 TCCCTAGCAAACCAAACAGGG 60.203 52.381 0.00 0.00 43.52 4.45
437 438 1.480498 CCCTAGCAAACCAAACAGGGT 60.480 52.381 0.00 0.00 45.04 4.34
438 439 1.613437 CCTAGCAAACCAAACAGGGTG 59.387 52.381 0.00 0.00 41.32 4.61
439 440 1.613437 CTAGCAAACCAAACAGGGTGG 59.387 52.381 0.00 0.00 41.32 4.61
440 441 1.048160 AGCAAACCAAACAGGGTGGG 61.048 55.000 0.00 0.00 41.32 4.61
441 442 1.045911 GCAAACCAAACAGGGTGGGA 61.046 55.000 0.00 0.00 41.32 4.37
442 443 0.750249 CAAACCAAACAGGGTGGGAC 59.250 55.000 0.00 0.00 41.32 4.46
443 444 0.634465 AAACCAAACAGGGTGGGACT 59.366 50.000 0.00 0.00 41.32 3.85
444 445 0.634465 AACCAAACAGGGTGGGACTT 59.366 50.000 0.00 0.00 41.32 3.01
445 446 0.634465 ACCAAACAGGGTGGGACTTT 59.366 50.000 0.00 0.00 43.89 2.66
446 447 1.007842 ACCAAACAGGGTGGGACTTTT 59.992 47.619 0.00 0.00 43.89 2.27
447 448 2.115427 CCAAACAGGGTGGGACTTTTT 58.885 47.619 0.00 0.00 32.03 1.94
448 449 2.158971 CCAAACAGGGTGGGACTTTTTG 60.159 50.000 0.00 0.00 36.11 2.44
449 450 1.788229 AACAGGGTGGGACTTTTTGG 58.212 50.000 0.00 0.00 0.00 3.28
450 451 0.105709 ACAGGGTGGGACTTTTTGGG 60.106 55.000 0.00 0.00 0.00 4.12
451 452 0.105709 CAGGGTGGGACTTTTTGGGT 60.106 55.000 0.00 0.00 0.00 4.51
452 453 0.187606 AGGGTGGGACTTTTTGGGTC 59.812 55.000 0.00 0.00 0.00 4.46
453 454 0.187606 GGGTGGGACTTTTTGGGTCT 59.812 55.000 0.00 0.00 34.47 3.85
454 455 1.412505 GGGTGGGACTTTTTGGGTCTT 60.413 52.381 0.00 0.00 34.47 3.01
455 456 2.394632 GGTGGGACTTTTTGGGTCTTT 58.605 47.619 0.00 0.00 34.47 2.52
456 457 2.769663 GGTGGGACTTTTTGGGTCTTTT 59.230 45.455 0.00 0.00 34.47 2.27
457 458 3.199071 GGTGGGACTTTTTGGGTCTTTTT 59.801 43.478 0.00 0.00 34.47 1.94
458 459 4.188462 GTGGGACTTTTTGGGTCTTTTTG 58.812 43.478 0.00 0.00 34.47 2.44
459 460 3.202906 GGGACTTTTTGGGTCTTTTTGC 58.797 45.455 0.00 0.00 34.47 3.68
460 461 3.118408 GGGACTTTTTGGGTCTTTTTGCT 60.118 43.478 0.00 0.00 34.47 3.91
461 462 4.100344 GGGACTTTTTGGGTCTTTTTGCTA 59.900 41.667 0.00 0.00 34.47 3.49
462 463 5.395879 GGGACTTTTTGGGTCTTTTTGCTAA 60.396 40.000 0.00 0.00 34.47 3.09
463 464 6.110033 GGACTTTTTGGGTCTTTTTGCTAAA 58.890 36.000 0.00 0.00 34.47 1.85
464 465 6.596106 GGACTTTTTGGGTCTTTTTGCTAAAA 59.404 34.615 5.93 5.93 34.47 1.52
466 467 7.165485 ACTTTTTGGGTCTTTTTGCTAAAAGT 58.835 30.769 25.60 0.00 46.66 2.66
467 468 7.663905 ACTTTTTGGGTCTTTTTGCTAAAAGTT 59.336 29.630 25.60 3.92 46.66 2.66
468 469 7.603963 TTTTGGGTCTTTTTGCTAAAAGTTC 57.396 32.000 25.60 20.17 46.66 3.01
469 470 6.538945 TTGGGTCTTTTTGCTAAAAGTTCT 57.461 33.333 25.60 0.00 46.66 3.01
470 471 6.538945 TGGGTCTTTTTGCTAAAAGTTCTT 57.461 33.333 25.60 0.00 46.66 2.52
471 472 7.648039 TGGGTCTTTTTGCTAAAAGTTCTTA 57.352 32.000 25.60 9.57 46.66 2.10
472 473 7.712797 TGGGTCTTTTTGCTAAAAGTTCTTAG 58.287 34.615 25.60 6.59 46.66 2.18
473 474 7.558444 TGGGTCTTTTTGCTAAAAGTTCTTAGA 59.442 33.333 25.60 8.54 46.66 2.10
474 475 8.410912 GGGTCTTTTTGCTAAAAGTTCTTAGAA 58.589 33.333 25.60 7.80 46.66 2.10
475 476 9.452065 GGTCTTTTTGCTAAAAGTTCTTAGAAG 57.548 33.333 25.60 4.75 46.66 2.85
476 477 8.959058 GTCTTTTTGCTAAAAGTTCTTAGAAGC 58.041 33.333 25.60 0.00 46.66 3.86
477 478 8.682710 TCTTTTTGCTAAAAGTTCTTAGAAGCA 58.317 29.630 25.60 0.00 46.66 3.91
478 479 8.628882 TTTTTGCTAAAAGTTCTTAGAAGCAC 57.371 30.769 3.82 0.00 38.15 4.40
479 480 5.941948 TGCTAAAAGTTCTTAGAAGCACC 57.058 39.130 0.00 0.00 33.84 5.01
480 481 5.621193 TGCTAAAAGTTCTTAGAAGCACCT 58.379 37.500 0.00 0.00 33.84 4.00
481 482 5.701290 TGCTAAAAGTTCTTAGAAGCACCTC 59.299 40.000 0.00 0.00 33.84 3.85
482 483 5.122554 GCTAAAAGTTCTTAGAAGCACCTCC 59.877 44.000 0.00 0.00 31.59 4.30
483 484 4.984146 AAAGTTCTTAGAAGCACCTCCT 57.016 40.909 0.00 0.00 0.00 3.69
484 485 4.984146 AAGTTCTTAGAAGCACCTCCTT 57.016 40.909 0.00 0.00 0.00 3.36
485 486 4.278975 AGTTCTTAGAAGCACCTCCTTG 57.721 45.455 0.00 0.00 0.00 3.61
486 487 3.904339 AGTTCTTAGAAGCACCTCCTTGA 59.096 43.478 0.00 0.00 0.00 3.02
487 488 4.020662 AGTTCTTAGAAGCACCTCCTTGAG 60.021 45.833 0.00 0.00 0.00 3.02
488 489 3.779444 TCTTAGAAGCACCTCCTTGAGA 58.221 45.455 0.00 0.00 0.00 3.27
489 490 3.766591 TCTTAGAAGCACCTCCTTGAGAG 59.233 47.826 0.00 0.00 42.83 3.20
490 491 2.022718 AGAAGCACCTCCTTGAGAGT 57.977 50.000 0.00 0.00 41.47 3.24
491 492 1.899142 AGAAGCACCTCCTTGAGAGTC 59.101 52.381 0.00 0.00 41.47 3.36
492 493 1.899142 GAAGCACCTCCTTGAGAGTCT 59.101 52.381 0.00 0.00 41.47 3.24
493 494 2.022718 AGCACCTCCTTGAGAGTCTT 57.977 50.000 0.00 0.00 41.47 3.01
494 495 2.334023 AGCACCTCCTTGAGAGTCTTT 58.666 47.619 0.00 0.00 41.47 2.52
495 496 2.708325 AGCACCTCCTTGAGAGTCTTTT 59.292 45.455 0.00 0.00 41.47 2.27
496 497 3.137360 AGCACCTCCTTGAGAGTCTTTTT 59.863 43.478 0.00 0.00 41.47 1.94
497 498 3.500299 GCACCTCCTTGAGAGTCTTTTTC 59.500 47.826 0.00 0.00 41.47 2.29
498 499 4.708177 CACCTCCTTGAGAGTCTTTTTCA 58.292 43.478 0.00 0.00 41.47 2.69
499 500 5.126067 CACCTCCTTGAGAGTCTTTTTCAA 58.874 41.667 0.00 0.00 41.47 2.69
500 501 5.590259 CACCTCCTTGAGAGTCTTTTTCAAA 59.410 40.000 0.00 0.00 41.47 2.69
501 502 6.095440 CACCTCCTTGAGAGTCTTTTTCAAAA 59.905 38.462 0.00 0.00 41.47 2.44
502 503 6.663523 ACCTCCTTGAGAGTCTTTTTCAAAAA 59.336 34.615 0.00 0.00 41.47 1.94
503 504 7.148000 ACCTCCTTGAGAGTCTTTTTCAAAAAG 60.148 37.037 15.46 15.46 41.47 2.27
504 505 7.148000 CCTCCTTGAGAGTCTTTTTCAAAAAGT 60.148 37.037 19.82 4.20 41.47 2.66
505 506 7.762382 TCCTTGAGAGTCTTTTTCAAAAAGTC 58.238 34.615 19.82 15.25 31.11 3.01
506 507 6.975197 CCTTGAGAGTCTTTTTCAAAAAGTCC 59.025 38.462 19.82 12.77 31.11 3.85
507 508 7.148000 CCTTGAGAGTCTTTTTCAAAAAGTCCT 60.148 37.037 19.82 16.49 31.11 3.85
508 509 8.801882 TTGAGAGTCTTTTTCAAAAAGTCCTA 57.198 30.769 19.82 0.61 0.00 2.94
509 510 8.438676 TGAGAGTCTTTTTCAAAAAGTCCTAG 57.561 34.615 19.82 0.00 0.00 3.02
510 511 7.499232 TGAGAGTCTTTTTCAAAAAGTCCTAGG 59.501 37.037 19.82 0.82 0.00 3.02
511 512 7.574607 AGAGTCTTTTTCAAAAAGTCCTAGGA 58.425 34.615 19.82 7.62 0.00 2.94
512 513 7.499563 AGAGTCTTTTTCAAAAAGTCCTAGGAC 59.500 37.037 31.29 31.29 44.86 3.85
525 526 5.327616 GTCCTAGGACTAGAGAACCAAAC 57.672 47.826 31.12 3.26 41.57 2.93
526 527 4.771054 GTCCTAGGACTAGAGAACCAAACA 59.229 45.833 31.12 0.00 41.57 2.83
527 528 4.771054 TCCTAGGACTAGAGAACCAAACAC 59.229 45.833 7.62 0.00 35.21 3.32
528 529 4.081586 CCTAGGACTAGAGAACCAAACACC 60.082 50.000 1.05 0.00 35.21 4.16
529 530 3.314693 AGGACTAGAGAACCAAACACCA 58.685 45.455 0.00 0.00 0.00 4.17
530 531 3.071167 AGGACTAGAGAACCAAACACCAC 59.929 47.826 0.00 0.00 0.00 4.16
531 532 3.400255 GACTAGAGAACCAAACACCACC 58.600 50.000 0.00 0.00 0.00 4.61
546 547 7.255139 CCAAACACCACCTAAGTCTTTTTAGAG 60.255 40.741 0.00 0.00 33.42 2.43
550 551 7.878644 ACACCACCTAAGTCTTTTTAGAGATTC 59.121 37.037 0.00 0.00 33.42 2.52
551 552 7.878127 CACCACCTAAGTCTTTTTAGAGATTCA 59.122 37.037 0.00 0.00 33.42 2.57
553 554 8.722394 CCACCTAAGTCTTTTTAGAGATTCAAC 58.278 37.037 0.00 0.00 33.42 3.18
554 555 9.495572 CACCTAAGTCTTTTTAGAGATTCAACT 57.504 33.333 0.00 0.00 33.42 3.16
558 559 8.535690 AAGTCTTTTTAGAGATTCAACTACGG 57.464 34.615 0.00 0.00 0.00 4.02
559 560 7.893658 AGTCTTTTTAGAGATTCAACTACGGA 58.106 34.615 0.00 0.00 0.00 4.69
560 561 8.532819 AGTCTTTTTAGAGATTCAACTACGGAT 58.467 33.333 0.00 0.00 0.00 4.18
561 562 9.152595 GTCTTTTTAGAGATTCAACTACGGATT 57.847 33.333 0.00 0.00 0.00 3.01
564 565 9.932207 TTTTTAGAGATTCAACTACGGATTACA 57.068 29.630 0.00 0.00 0.00 2.41
637 641 7.919313 TTCGTATGTAGTTCGTAATGGAATC 57.081 36.000 0.00 0.00 0.00 2.52
639 643 7.358066 TCGTATGTAGTTCGTAATGGAATCTC 58.642 38.462 0.00 0.00 0.00 2.75
642 646 9.828852 GTATGTAGTTCGTAATGGAATCTCTAG 57.171 37.037 0.00 0.00 0.00 2.43
643 647 8.693120 ATGTAGTTCGTAATGGAATCTCTAGA 57.307 34.615 0.00 0.00 0.00 2.43
650 654 8.294954 TCGTAATGGAATCTCTAGAAAGACTT 57.705 34.615 0.00 0.00 0.00 3.01
673 677 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
674 678 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
675 679 2.431954 TAGGAACGGAGGGAGTACTG 57.568 55.000 0.00 0.00 0.00 2.74
677 681 1.637553 AGGAACGGAGGGAGTACTGTA 59.362 52.381 0.00 0.00 0.00 2.74
689 784 5.596361 AGGGAGTACTGTATGACTCATTCTG 59.404 44.000 0.00 0.00 43.28 3.02
690 785 5.361285 GGGAGTACTGTATGACTCATTCTGT 59.639 44.000 0.00 11.28 43.28 3.41
691 786 6.460399 GGGAGTACTGTATGACTCATTCTGTC 60.460 46.154 0.00 0.00 43.28 3.51
692 787 6.458232 AGTACTGTATGACTCATTCTGTCC 57.542 41.667 10.25 2.22 33.83 4.02
693 788 4.744795 ACTGTATGACTCATTCTGTCCC 57.255 45.455 0.00 0.00 33.83 4.46
694 789 4.096681 ACTGTATGACTCATTCTGTCCCA 58.903 43.478 0.00 0.00 33.83 4.37
695 790 4.081420 ACTGTATGACTCATTCTGTCCCAC 60.081 45.833 0.00 0.00 33.83 4.61
696 791 4.096681 TGTATGACTCATTCTGTCCCACT 58.903 43.478 0.00 0.00 33.83 4.00
697 792 4.532126 TGTATGACTCATTCTGTCCCACTT 59.468 41.667 0.00 0.00 33.83 3.16
698 793 3.407424 TGACTCATTCTGTCCCACTTG 57.593 47.619 0.00 0.00 33.83 3.16
699 794 2.972021 TGACTCATTCTGTCCCACTTGA 59.028 45.455 0.00 0.00 33.83 3.02
700 795 3.007290 TGACTCATTCTGTCCCACTTGAG 59.993 47.826 0.00 0.00 37.27 3.02
701 796 2.289945 ACTCATTCTGTCCCACTTGAGC 60.290 50.000 0.00 0.00 35.20 4.26
702 797 1.003580 TCATTCTGTCCCACTTGAGCC 59.996 52.381 0.00 0.00 0.00 4.70
703 798 1.067295 ATTCTGTCCCACTTGAGCCA 58.933 50.000 0.00 0.00 0.00 4.75
704 799 0.843309 TTCTGTCCCACTTGAGCCAA 59.157 50.000 0.00 0.00 0.00 4.52
705 800 0.397941 TCTGTCCCACTTGAGCCAAG 59.602 55.000 11.87 11.87 45.85 3.61
706 801 0.607489 CTGTCCCACTTGAGCCAAGG 60.607 60.000 16.21 7.67 44.81 3.61
707 802 1.059584 TGTCCCACTTGAGCCAAGGA 61.060 55.000 16.21 5.48 44.81 3.36
708 803 0.322008 GTCCCACTTGAGCCAAGGAG 60.322 60.000 16.21 9.81 44.81 3.69
729 824 4.364860 AGGTTGGTCGTGCATTTAAAAAC 58.635 39.130 0.00 0.00 0.00 2.43
949 1076 1.804748 GACCTTTTAACCTGCTCCACG 59.195 52.381 0.00 0.00 0.00 4.94
1138 1280 3.077556 AAGCCCGCCTGATCTCGT 61.078 61.111 0.00 0.00 0.00 4.18
1139 1281 3.376935 AAGCCCGCCTGATCTCGTG 62.377 63.158 0.00 0.00 0.00 4.35
1140 1282 3.838271 GCCCGCCTGATCTCGTGA 61.838 66.667 0.00 0.00 0.00 4.35
1141 1283 2.415010 CCCGCCTGATCTCGTGAG 59.585 66.667 0.00 0.00 0.00 3.51
1142 1284 2.418910 CCCGCCTGATCTCGTGAGT 61.419 63.158 0.00 0.00 0.00 3.41
1143 1285 1.064946 CCGCCTGATCTCGTGAGTC 59.935 63.158 0.00 0.00 0.00 3.36
1144 1286 1.297967 CGCCTGATCTCGTGAGTCG 60.298 63.158 0.00 0.00 41.41 4.18
1145 1287 1.803943 GCCTGATCTCGTGAGTCGT 59.196 57.895 0.00 0.00 40.80 4.34
1146 1288 0.524392 GCCTGATCTCGTGAGTCGTG 60.524 60.000 0.00 0.00 40.80 4.35
1160 1302 4.457496 CGTGACCGCCCTGCTGAT 62.457 66.667 0.00 0.00 0.00 2.90
1179 1321 2.004583 TCTAACTCACGCGAAATGGG 57.995 50.000 15.93 2.44 0.00 4.00
1180 1322 1.006832 CTAACTCACGCGAAATGGGG 58.993 55.000 15.93 0.00 34.15 4.96
1181 1323 1.022451 TAACTCACGCGAAATGGGGC 61.022 55.000 15.93 0.00 34.15 5.80
1182 1324 3.508840 CTCACGCGAAATGGGGCC 61.509 66.667 15.93 0.00 34.15 5.80
1243 1385 2.030701 CGACTACTGCTTCTACGACTCC 59.969 54.545 0.00 0.00 0.00 3.85
1400 1542 4.161189 TGCTCTTCCTCTTCTCATGGTAAG 59.839 45.833 0.00 0.00 0.00 2.34
1407 1554 6.586344 TCCTCTTCTCATGGTAAGCTATTTG 58.414 40.000 0.00 0.00 0.00 2.32
1462 1610 3.004315 TCGCATGACGTAGCTCATAATCA 59.996 43.478 0.00 0.00 44.19 2.57
1471 1619 4.332543 CGTAGCTCATAATCAGCCAACAAA 59.667 41.667 0.00 0.00 37.63 2.83
1472 1620 5.008019 CGTAGCTCATAATCAGCCAACAAAT 59.992 40.000 0.00 0.00 37.63 2.32
1494 1642 7.468141 AATATTGAAGTTTCCTTTCCACTCC 57.532 36.000 0.00 0.00 0.00 3.85
1495 1643 3.223674 TGAAGTTTCCTTTCCACTCCC 57.776 47.619 0.00 0.00 0.00 4.30
1507 1655 2.907892 TCCACTCCCTTGTCTTCTGAT 58.092 47.619 0.00 0.00 0.00 2.90
1529 1677 0.531974 TTGTGGCCGTCAGTTCAGTC 60.532 55.000 0.00 0.00 0.00 3.51
1592 1740 2.754552 TGTGGCCTGAATTTACTGATGC 59.245 45.455 3.32 0.00 0.00 3.91
1597 1745 2.289002 CCTGAATTTACTGATGCCGCTC 59.711 50.000 0.00 0.00 0.00 5.03
1598 1746 2.938451 CTGAATTTACTGATGCCGCTCA 59.062 45.455 0.00 0.00 0.00 4.26
1603 1751 1.617018 TACTGATGCCGCTCAAGCCT 61.617 55.000 0.00 0.00 37.91 4.58
1631 1790 6.268847 ACTTCAGATCTAAAGTGAGGTTGAGT 59.731 38.462 10.64 0.00 34.52 3.41
1642 1801 2.176798 TGAGGTTGAGTTTGGGGTTCAT 59.823 45.455 0.00 0.00 0.00 2.57
1654 1823 2.092968 TGGGGTTCATATCTCTGTGTGC 60.093 50.000 0.00 0.00 0.00 4.57
1666 1835 1.538075 TCTGTGTGCGTGTCGATTCTA 59.462 47.619 0.00 0.00 0.00 2.10
1674 1843 1.281899 GTGTCGATTCTACTGCTGGC 58.718 55.000 0.00 0.00 0.00 4.85
1759 1932 1.271102 AGTCGAGTGCCTTCTGAAGTC 59.729 52.381 15.72 4.02 0.00 3.01
1760 1933 1.271102 GTCGAGTGCCTTCTGAAGTCT 59.729 52.381 15.72 10.68 0.00 3.24
1762 1935 1.270826 CGAGTGCCTTCTGAAGTCTGA 59.729 52.381 15.72 0.00 0.00 3.27
1763 1936 2.288457 CGAGTGCCTTCTGAAGTCTGAA 60.288 50.000 15.72 1.36 33.68 3.02
1765 1938 2.703007 AGTGCCTTCTGAAGTCTGAACT 59.297 45.455 15.72 8.06 37.32 3.01
1766 1939 3.898123 AGTGCCTTCTGAAGTCTGAACTA 59.102 43.478 15.72 0.00 33.48 2.24
1767 1940 4.021544 AGTGCCTTCTGAAGTCTGAACTAG 60.022 45.833 15.72 0.00 33.48 2.57
1768 1941 3.259374 TGCCTTCTGAAGTCTGAACTAGG 59.741 47.826 15.72 0.00 33.48 3.02
1770 1943 4.815269 CCTTCTGAAGTCTGAACTAGGTG 58.185 47.826 15.72 0.00 33.48 4.00
1771 1944 3.944055 TCTGAAGTCTGAACTAGGTGC 57.056 47.619 0.00 0.00 33.48 5.01
1772 1945 2.563179 TCTGAAGTCTGAACTAGGTGCC 59.437 50.000 0.00 0.00 33.48 5.01
1773 1946 2.564947 CTGAAGTCTGAACTAGGTGCCT 59.435 50.000 0.00 0.00 33.48 4.75
1774 1947 2.300152 TGAAGTCTGAACTAGGTGCCTG 59.700 50.000 0.12 0.00 33.48 4.85
1775 1948 0.610687 AGTCTGAACTAGGTGCCTGC 59.389 55.000 0.12 0.00 32.59 4.85
1776 1949 0.610687 GTCTGAACTAGGTGCCTGCT 59.389 55.000 0.12 0.00 0.00 4.24
1777 1950 0.610174 TCTGAACTAGGTGCCTGCTG 59.390 55.000 0.12 0.00 0.00 4.41
1838 2011 6.369615 TCAAAATTTACCTTGCTCGGTAGTAC 59.630 38.462 0.00 0.00 40.43 2.73
1839 2012 5.672421 AATTTACCTTGCTCGGTAGTACT 57.328 39.130 0.00 0.00 40.43 2.73
1840 2013 4.445452 TTTACCTTGCTCGGTAGTACTG 57.555 45.455 5.39 2.39 40.43 2.74
1841 2014 1.920610 ACCTTGCTCGGTAGTACTGT 58.079 50.000 5.39 0.00 34.94 3.55
1842 2015 3.077484 ACCTTGCTCGGTAGTACTGTA 57.923 47.619 5.39 0.00 34.94 2.74
1888 2061 5.241728 AGGGTTCTCTGTTTGTGCTAAATTC 59.758 40.000 0.00 0.00 0.00 2.17
1982 2162 8.024285 GGGTATATAGAATCTCTTGACTGAACG 58.976 40.741 0.00 0.00 0.00 3.95
2011 2191 2.652941 CACAAAACTGGTGCTGTGTT 57.347 45.000 1.11 0.00 35.52 3.32
2012 2192 3.773860 CACAAAACTGGTGCTGTGTTA 57.226 42.857 1.11 0.00 35.52 2.41
2015 2195 5.212194 CACAAAACTGGTGCTGTGTTATAC 58.788 41.667 1.11 0.00 35.52 1.47
2065 2248 4.573201 TGGTACTGTTGTTCCTTTTTCTCG 59.427 41.667 0.00 0.00 35.08 4.04
2127 2340 6.183361 CCATAATCTCCATCTCCTCCTTGAAA 60.183 42.308 0.00 0.00 0.00 2.69
2447 2718 7.220740 TGTGTGACTGAATTGTTTATCTGGTA 58.779 34.615 0.00 0.00 0.00 3.25
2463 2734 6.645790 ATCTGGTATTCCTTGAAATCATGC 57.354 37.500 0.00 0.00 34.23 4.06
2467 2738 7.779326 TCTGGTATTCCTTGAAATCATGCATTA 59.221 33.333 0.00 0.00 34.23 1.90
2468 2739 8.481492 TGGTATTCCTTGAAATCATGCATTAT 57.519 30.769 0.00 0.00 34.23 1.28
2469 2740 8.926374 TGGTATTCCTTGAAATCATGCATTATT 58.074 29.630 0.00 0.00 34.23 1.40
2470 2741 9.199982 GGTATTCCTTGAAATCATGCATTATTG 57.800 33.333 6.87 0.00 0.00 1.90
2476 2747 7.717875 CCTTGAAATCATGCATTATTGGGATTT 59.282 33.333 16.14 16.14 37.59 2.17
2483 2754 9.768662 ATCATGCATTATTGGGATTTTCTAAAC 57.231 29.630 0.00 0.00 0.00 2.01
2497 2768 8.621286 GGATTTTCTAAACAGTTCTCAAGTCAA 58.379 33.333 0.00 0.00 0.00 3.18
2500 2771 3.675467 AAACAGTTCTCAAGTCAACGC 57.325 42.857 0.00 0.00 0.00 4.84
2579 2853 2.357009 GACATGCCATTGTCTGACCATC 59.643 50.000 5.17 0.00 42.22 3.51
2586 2860 0.608130 TTGTCTGACCATCCTCACCG 59.392 55.000 5.17 0.00 0.00 4.94
2607 2881 2.480587 GGTTTGGAACCGGTTTCACTTG 60.481 50.000 28.35 0.00 42.62 3.16
2623 2897 4.780815 TCACTTGTTGGACTGTTTCTGAT 58.219 39.130 0.00 0.00 0.00 2.90
2628 2902 3.316029 TGTTGGACTGTTTCTGATTGCTG 59.684 43.478 0.00 0.00 0.00 4.41
2647 2921 2.486982 CTGCTTCTTGTGTCCCTCAATG 59.513 50.000 0.00 0.00 0.00 2.82
2670 2954 9.590451 AATGCATATATTGAAACTTGAACTTGG 57.410 29.630 0.00 0.00 0.00 3.61
2674 2958 2.842208 TGAAACTTGAACTTGGTGCG 57.158 45.000 0.00 0.00 0.00 5.34
2703 2987 3.189287 CCTTATTGCTGTTGTCTGACACC 59.811 47.826 10.56 3.87 0.00 4.16
2704 2988 1.229428 ATTGCTGTTGTCTGACACCG 58.771 50.000 10.56 3.08 0.00 4.94
2705 2989 0.176910 TTGCTGTTGTCTGACACCGA 59.823 50.000 10.56 0.00 0.00 4.69
2706 2990 0.529773 TGCTGTTGTCTGACACCGAC 60.530 55.000 10.56 7.07 0.00 4.79
2707 2991 0.529773 GCTGTTGTCTGACACCGACA 60.530 55.000 10.56 11.39 39.45 4.35
2757 3041 6.391537 AGGTTTCGTTGAGATTCTCTAACTC 58.608 40.000 14.54 0.00 0.00 3.01
2758 3042 6.209788 AGGTTTCGTTGAGATTCTCTAACTCT 59.790 38.462 14.54 7.70 0.00 3.24
3177 3503 2.092861 TGGAAAGGTTCAGTCCGTTTCA 60.093 45.455 0.00 0.00 33.36 2.69
3178 3504 2.289820 GGAAAGGTTCAGTCCGTTTCAC 59.710 50.000 0.00 0.00 32.09 3.18
3179 3505 3.203716 GAAAGGTTCAGTCCGTTTCACT 58.796 45.455 0.00 0.00 31.48 3.41
3180 3506 3.277142 AAGGTTCAGTCCGTTTCACTT 57.723 42.857 0.00 0.00 0.00 3.16
3181 3507 3.277142 AGGTTCAGTCCGTTTCACTTT 57.723 42.857 0.00 0.00 0.00 2.66
3182 3508 3.203716 AGGTTCAGTCCGTTTCACTTTC 58.796 45.455 0.00 0.00 0.00 2.62
3229 3561 1.021968 GGAGTGCGGTGTTCTTGTTT 58.978 50.000 0.00 0.00 0.00 2.83
3302 3634 4.521130 AATGAGTTCGCTGTCTTCACTA 57.479 40.909 0.00 0.00 0.00 2.74
3325 3657 6.006275 AGTTATGTATGAGATTGCCTGGTT 57.994 37.500 0.00 0.00 0.00 3.67
3326 3658 5.824624 AGTTATGTATGAGATTGCCTGGTTG 59.175 40.000 0.00 0.00 0.00 3.77
3327 3659 3.719268 TGTATGAGATTGCCTGGTTGT 57.281 42.857 0.00 0.00 0.00 3.32
3348 3680 7.174253 GGTTGTTCCATGTATGAGAACAAAGTA 59.826 37.037 25.56 13.32 46.57 2.24
3405 3737 7.909485 AGCCATTGAGAATAAATGGATCTTT 57.091 32.000 17.24 0.00 44.71 2.52
3428 3760 0.952280 AAGAAGACTGACGCTGACGA 59.048 50.000 0.00 0.00 43.93 4.20
3582 3914 9.872757 GCATTTTATGATTATGAAATTTGGCAG 57.127 29.630 0.00 0.00 32.15 4.85
3616 3948 5.750352 AACTGCATTCCTGAATGGATTTT 57.250 34.783 18.69 10.73 45.71 1.82
3722 4054 0.698238 TATGGACTGGTGCAAGCCTT 59.302 50.000 0.00 0.00 33.77 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 2.665537 TCGAGACTCGTCGTTCTCTAAC 59.334 50.000 23.41 0.00 41.35 2.34
64 65 2.951726 TCGAGACTCGTCGTTCTCTAA 58.048 47.619 23.41 0.00 41.35 2.10
74 75 2.702592 AGGAAGAGATCGAGACTCGT 57.297 50.000 23.41 11.66 41.35 4.18
94 95 1.340248 AGAGAGCGAACAACGGAGAAA 59.660 47.619 0.00 0.00 42.83 2.52
99 100 0.734253 CCAGAGAGAGCGAACAACGG 60.734 60.000 0.00 0.00 42.83 4.44
100 101 0.039074 ACCAGAGAGAGCGAACAACG 60.039 55.000 0.00 0.00 45.66 4.10
116 117 2.048597 CGCACGCTAGAACCACCA 60.049 61.111 0.00 0.00 0.00 4.17
120 121 1.587034 GTTATCACGCACGCTAGAACC 59.413 52.381 0.00 0.00 0.00 3.62
148 149 9.780413 GATCAATAGAAGTTTTCCATTCACTTC 57.220 33.333 3.54 3.54 44.61 3.01
183 184 8.082852 TCTTCGGAGCATATAGATTGTACTTTC 58.917 37.037 0.00 0.00 0.00 2.62
194 195 3.498777 TCGTGTCTCTTCGGAGCATATAG 59.501 47.826 0.00 0.00 41.58 1.31
199 200 1.579932 GTCGTGTCTCTTCGGAGCA 59.420 57.895 0.00 0.00 41.58 4.26
203 204 0.446616 TGATCGTCGTGTCTCTTCGG 59.553 55.000 0.00 0.00 0.00 4.30
206 207 1.740585 CCTCTGATCGTCGTGTCTCTT 59.259 52.381 0.00 0.00 0.00 2.85
223 224 1.227002 GGAACCGACGCATCTCCTC 60.227 63.158 0.00 0.00 0.00 3.71
233 234 0.461961 CATCTCTCCCTGGAACCGAC 59.538 60.000 0.00 0.00 0.00 4.79
238 239 1.018840 TCTCCCATCTCTCCCTGGAA 58.981 55.000 0.00 0.00 34.24 3.53
247 248 2.725008 CGACGCCTCTCCCATCTC 59.275 66.667 0.00 0.00 0.00 2.75
273 274 1.673033 CCAAACAGTCGAGCGATTCCT 60.673 52.381 0.00 0.00 0.00 3.36
276 277 1.298859 GCCCAAACAGTCGAGCGATT 61.299 55.000 0.00 0.00 0.00 3.34
287 288 0.039618 GATCTCCCCTTGCCCAAACA 59.960 55.000 0.00 0.00 0.00 2.83
346 347 8.373220 CCCCTTATATTTAGGAACGAATGTAGT 58.627 37.037 5.39 0.00 34.56 2.73
349 350 6.102174 ACCCCCTTATATTTAGGAACGAATGT 59.898 38.462 5.39 0.00 34.56 2.71
351 352 6.102174 ACACCCCCTTATATTTAGGAACGAAT 59.898 38.462 5.39 0.00 34.56 3.34
353 354 4.970640 ACACCCCCTTATATTTAGGAACGA 59.029 41.667 5.39 0.00 34.56 3.85
360 361 6.196434 GGAACCAAACACCCCCTTATATTTA 58.804 40.000 0.00 0.00 0.00 1.40
366 367 1.146152 CTGGAACCAAACACCCCCTTA 59.854 52.381 0.00 0.00 0.00 2.69
367 368 0.105709 CTGGAACCAAACACCCCCTT 60.106 55.000 0.00 0.00 0.00 3.95
368 369 1.541672 CTGGAACCAAACACCCCCT 59.458 57.895 0.00 0.00 0.00 4.79
369 370 1.533033 CCTGGAACCAAACACCCCC 60.533 63.158 0.00 0.00 0.00 5.40
370 371 1.533033 CCCTGGAACCAAACACCCC 60.533 63.158 0.00 0.00 0.00 4.95
371 372 0.826256 GTCCCTGGAACCAAACACCC 60.826 60.000 0.00 0.00 0.00 4.61
372 373 0.185175 AGTCCCTGGAACCAAACACC 59.815 55.000 0.00 0.00 0.00 4.16
373 374 2.067365 AAGTCCCTGGAACCAAACAC 57.933 50.000 0.00 0.00 0.00 3.32
374 375 2.838637 AAAGTCCCTGGAACCAAACA 57.161 45.000 0.00 0.00 0.00 2.83
393 394 8.680001 GGGACTTTTTCTAGTTCTAACACAAAA 58.320 33.333 0.00 0.00 0.00 2.44
394 395 8.050930 AGGGACTTTTTCTAGTTCTAACACAAA 58.949 33.333 0.00 0.00 27.25 2.83
395 396 7.571025 AGGGACTTTTTCTAGTTCTAACACAA 58.429 34.615 0.00 0.00 27.25 3.33
396 397 7.133133 AGGGACTTTTTCTAGTTCTAACACA 57.867 36.000 0.00 0.00 27.25 3.72
397 398 7.331440 GCTAGGGACTTTTTCTAGTTCTAACAC 59.669 40.741 0.00 0.00 41.75 3.32
398 399 7.015877 TGCTAGGGACTTTTTCTAGTTCTAACA 59.984 37.037 0.00 0.00 41.75 2.41
399 400 7.384477 TGCTAGGGACTTTTTCTAGTTCTAAC 58.616 38.462 0.00 0.00 41.75 2.34
400 401 7.549147 TGCTAGGGACTTTTTCTAGTTCTAA 57.451 36.000 0.00 0.00 41.75 2.10
401 402 7.549147 TTGCTAGGGACTTTTTCTAGTTCTA 57.451 36.000 0.00 0.00 41.75 2.10
402 403 6.435292 TTGCTAGGGACTTTTTCTAGTTCT 57.565 37.500 0.00 0.00 41.75 3.01
403 404 6.072618 GGTTTGCTAGGGACTTTTTCTAGTTC 60.073 42.308 0.00 0.00 41.75 3.01
404 405 5.768662 GGTTTGCTAGGGACTTTTTCTAGTT 59.231 40.000 0.00 0.00 41.75 2.24
405 406 5.163131 TGGTTTGCTAGGGACTTTTTCTAGT 60.163 40.000 0.00 0.00 41.75 2.57
406 407 5.313712 TGGTTTGCTAGGGACTTTTTCTAG 58.686 41.667 0.00 0.00 41.75 2.43
407 408 5.313280 TGGTTTGCTAGGGACTTTTTCTA 57.687 39.130 0.00 0.00 41.75 2.10
408 409 4.178956 TGGTTTGCTAGGGACTTTTTCT 57.821 40.909 0.00 0.00 41.75 2.52
409 410 4.929819 TTGGTTTGCTAGGGACTTTTTC 57.070 40.909 0.00 0.00 41.75 2.29
410 411 4.468153 TGTTTGGTTTGCTAGGGACTTTTT 59.532 37.500 0.00 0.00 41.75 1.94
411 412 4.027437 TGTTTGGTTTGCTAGGGACTTTT 58.973 39.130 0.00 0.00 41.75 2.27
412 413 3.636764 CTGTTTGGTTTGCTAGGGACTTT 59.363 43.478 0.00 0.00 41.75 2.66
413 414 3.222603 CTGTTTGGTTTGCTAGGGACTT 58.777 45.455 0.00 0.00 41.75 3.01
414 415 2.489073 CCTGTTTGGTTTGCTAGGGACT 60.489 50.000 0.00 0.00 46.37 3.85
415 416 1.886542 CCTGTTTGGTTTGCTAGGGAC 59.113 52.381 0.00 0.00 0.00 4.46
416 417 1.203001 CCCTGTTTGGTTTGCTAGGGA 60.203 52.381 0.00 0.00 46.19 4.20
417 418 1.256812 CCCTGTTTGGTTTGCTAGGG 58.743 55.000 0.00 0.00 38.96 3.53
418 419 1.613437 CACCCTGTTTGGTTTGCTAGG 59.387 52.381 0.00 0.00 36.12 3.02
419 420 1.613437 CCACCCTGTTTGGTTTGCTAG 59.387 52.381 0.00 0.00 36.12 3.42
420 421 1.698506 CCACCCTGTTTGGTTTGCTA 58.301 50.000 0.00 0.00 36.12 3.49
421 422 1.048160 CCCACCCTGTTTGGTTTGCT 61.048 55.000 0.00 0.00 36.12 3.91
422 423 1.045911 TCCCACCCTGTTTGGTTTGC 61.046 55.000 0.00 0.00 36.12 3.68
423 424 0.750249 GTCCCACCCTGTTTGGTTTG 59.250 55.000 0.00 0.00 36.12 2.93
424 425 0.634465 AGTCCCACCCTGTTTGGTTT 59.366 50.000 0.00 0.00 36.12 3.27
425 426 0.634465 AAGTCCCACCCTGTTTGGTT 59.366 50.000 0.00 0.00 36.12 3.67
426 427 0.634465 AAAGTCCCACCCTGTTTGGT 59.366 50.000 0.00 0.00 39.96 3.67
427 428 1.788229 AAAAGTCCCACCCTGTTTGG 58.212 50.000 0.00 0.00 0.00 3.28
428 429 2.158971 CCAAAAAGTCCCACCCTGTTTG 60.159 50.000 0.00 0.00 37.04 2.93
429 430 2.115427 CCAAAAAGTCCCACCCTGTTT 58.885 47.619 0.00 0.00 0.00 2.83
430 431 1.691163 CCCAAAAAGTCCCACCCTGTT 60.691 52.381 0.00 0.00 0.00 3.16
431 432 0.105709 CCCAAAAAGTCCCACCCTGT 60.106 55.000 0.00 0.00 0.00 4.00
432 433 0.105709 ACCCAAAAAGTCCCACCCTG 60.106 55.000 0.00 0.00 0.00 4.45
433 434 0.187606 GACCCAAAAAGTCCCACCCT 59.812 55.000 0.00 0.00 0.00 4.34
434 435 0.187606 AGACCCAAAAAGTCCCACCC 59.812 55.000 0.00 0.00 34.67 4.61
435 436 2.082140 AAGACCCAAAAAGTCCCACC 57.918 50.000 0.00 0.00 34.67 4.61
436 437 4.188462 CAAAAAGACCCAAAAAGTCCCAC 58.812 43.478 0.00 0.00 34.67 4.61
437 438 3.369997 GCAAAAAGACCCAAAAAGTCCCA 60.370 43.478 0.00 0.00 34.67 4.37
438 439 3.118408 AGCAAAAAGACCCAAAAAGTCCC 60.118 43.478 0.00 0.00 34.67 4.46
439 440 4.137116 AGCAAAAAGACCCAAAAAGTCC 57.863 40.909 0.00 0.00 34.67 3.85
440 441 7.603963 TTTTAGCAAAAAGACCCAAAAAGTC 57.396 32.000 0.00 0.00 31.04 3.01
453 454 7.704899 GGTGCTTCTAAGAACTTTTAGCAAAAA 59.295 33.333 14.46 0.00 34.81 1.94
454 455 7.068226 AGGTGCTTCTAAGAACTTTTAGCAAAA 59.932 33.333 14.46 0.00 34.81 2.44
455 456 6.546034 AGGTGCTTCTAAGAACTTTTAGCAAA 59.454 34.615 14.46 0.00 34.81 3.68
456 457 6.062095 AGGTGCTTCTAAGAACTTTTAGCAA 58.938 36.000 14.46 3.51 34.81 3.91
457 458 5.621193 AGGTGCTTCTAAGAACTTTTAGCA 58.379 37.500 0.94 11.11 34.81 3.49
458 459 5.122554 GGAGGTGCTTCTAAGAACTTTTAGC 59.877 44.000 0.94 0.00 34.81 3.09
459 460 6.468543 AGGAGGTGCTTCTAAGAACTTTTAG 58.531 40.000 0.94 0.00 34.81 1.85
460 461 6.435292 AGGAGGTGCTTCTAAGAACTTTTA 57.565 37.500 0.94 0.00 34.81 1.52
461 462 5.311844 AGGAGGTGCTTCTAAGAACTTTT 57.688 39.130 0.94 0.00 34.81 2.27
462 463 4.984146 AGGAGGTGCTTCTAAGAACTTT 57.016 40.909 0.94 0.00 34.81 2.66
463 464 4.348168 TCAAGGAGGTGCTTCTAAGAACTT 59.652 41.667 0.94 0.00 34.81 2.66
464 465 3.904339 TCAAGGAGGTGCTTCTAAGAACT 59.096 43.478 0.94 0.00 34.81 3.01
465 466 4.021016 TCTCAAGGAGGTGCTTCTAAGAAC 60.021 45.833 0.00 0.00 33.56 3.01
466 467 4.160329 TCTCAAGGAGGTGCTTCTAAGAA 58.840 43.478 0.00 0.00 0.00 2.52
467 468 3.766591 CTCTCAAGGAGGTGCTTCTAAGA 59.233 47.826 0.00 0.00 38.35 2.10
468 469 3.513515 ACTCTCAAGGAGGTGCTTCTAAG 59.486 47.826 0.00 0.00 45.83 2.18
469 470 3.511477 ACTCTCAAGGAGGTGCTTCTAA 58.489 45.455 0.00 0.00 45.83 2.10
470 471 3.093057 GACTCTCAAGGAGGTGCTTCTA 58.907 50.000 0.00 0.00 45.83 2.10
471 472 1.899142 GACTCTCAAGGAGGTGCTTCT 59.101 52.381 0.00 0.00 45.83 2.85
472 473 1.899142 AGACTCTCAAGGAGGTGCTTC 59.101 52.381 0.00 0.00 45.83 3.86
473 474 2.022718 AGACTCTCAAGGAGGTGCTT 57.977 50.000 0.00 0.00 45.83 3.91
474 475 2.022718 AAGACTCTCAAGGAGGTGCT 57.977 50.000 0.00 0.00 45.83 4.40
475 476 2.849294 AAAGACTCTCAAGGAGGTGC 57.151 50.000 0.00 0.00 45.83 5.01
476 477 4.708177 TGAAAAAGACTCTCAAGGAGGTG 58.292 43.478 0.00 0.00 45.83 4.00
477 478 5.373812 TTGAAAAAGACTCTCAAGGAGGT 57.626 39.130 0.00 0.00 45.83 3.85
478 479 6.699575 TTTTGAAAAAGACTCTCAAGGAGG 57.300 37.500 0.00 0.00 45.83 4.30
479 480 7.766283 ACTTTTTGAAAAAGACTCTCAAGGAG 58.234 34.615 30.55 6.52 46.87 3.69
480 481 7.148069 GGACTTTTTGAAAAAGACTCTCAAGGA 60.148 37.037 30.55 0.00 31.11 3.36
481 482 6.975197 GGACTTTTTGAAAAAGACTCTCAAGG 59.025 38.462 30.55 7.27 31.11 3.61
482 483 7.766283 AGGACTTTTTGAAAAAGACTCTCAAG 58.234 34.615 30.55 7.82 31.11 3.02
483 484 7.703058 AGGACTTTTTGAAAAAGACTCTCAA 57.297 32.000 30.55 0.00 0.00 3.02
484 485 7.499232 CCTAGGACTTTTTGAAAAAGACTCTCA 59.501 37.037 30.55 14.91 0.00 3.27
485 486 7.715686 TCCTAGGACTTTTTGAAAAAGACTCTC 59.284 37.037 30.55 19.27 0.00 3.20
486 487 7.499563 GTCCTAGGACTTTTTGAAAAAGACTCT 59.500 37.037 30.55 23.56 41.57 3.24
487 488 7.640852 GTCCTAGGACTTTTTGAAAAAGACTC 58.359 38.462 30.55 20.15 41.57 3.36
488 489 7.569639 GTCCTAGGACTTTTTGAAAAAGACT 57.430 36.000 30.55 26.69 41.57 3.24
503 504 4.771054 TGTTTGGTTCTCTAGTCCTAGGAC 59.229 45.833 31.29 31.29 44.86 3.85
504 505 4.771054 GTGTTTGGTTCTCTAGTCCTAGGA 59.229 45.833 7.62 7.62 34.06 2.94
505 506 4.081586 GGTGTTTGGTTCTCTAGTCCTAGG 60.082 50.000 0.82 0.82 34.06 3.02
506 507 4.527038 TGGTGTTTGGTTCTCTAGTCCTAG 59.473 45.833 0.00 0.00 34.56 3.02
507 508 4.282703 GTGGTGTTTGGTTCTCTAGTCCTA 59.717 45.833 0.00 0.00 0.00 2.94
508 509 3.071167 GTGGTGTTTGGTTCTCTAGTCCT 59.929 47.826 0.00 0.00 0.00 3.85
509 510 3.400255 GTGGTGTTTGGTTCTCTAGTCC 58.600 50.000 0.00 0.00 0.00 3.85
510 511 3.071167 AGGTGGTGTTTGGTTCTCTAGTC 59.929 47.826 0.00 0.00 0.00 2.59
511 512 3.046374 AGGTGGTGTTTGGTTCTCTAGT 58.954 45.455 0.00 0.00 0.00 2.57
512 513 3.771577 AGGTGGTGTTTGGTTCTCTAG 57.228 47.619 0.00 0.00 0.00 2.43
513 514 4.657039 ACTTAGGTGGTGTTTGGTTCTCTA 59.343 41.667 0.00 0.00 0.00 2.43
514 515 3.458487 ACTTAGGTGGTGTTTGGTTCTCT 59.542 43.478 0.00 0.00 0.00 3.10
515 516 3.813724 GACTTAGGTGGTGTTTGGTTCTC 59.186 47.826 0.00 0.00 0.00 2.87
516 517 3.458487 AGACTTAGGTGGTGTTTGGTTCT 59.542 43.478 0.00 0.00 0.00 3.01
517 518 3.816994 AGACTTAGGTGGTGTTTGGTTC 58.183 45.455 0.00 0.00 0.00 3.62
518 519 3.945640 AGACTTAGGTGGTGTTTGGTT 57.054 42.857 0.00 0.00 0.00 3.67
519 520 3.945640 AAGACTTAGGTGGTGTTTGGT 57.054 42.857 0.00 0.00 0.00 3.67
520 521 5.592104 AAAAAGACTTAGGTGGTGTTTGG 57.408 39.130 0.00 0.00 32.01 3.28
521 522 7.497909 TCTCTAAAAAGACTTAGGTGGTGTTTG 59.502 37.037 0.00 0.00 32.01 2.93
522 523 7.571025 TCTCTAAAAAGACTTAGGTGGTGTTT 58.429 34.615 0.00 0.00 32.77 2.83
523 524 7.133133 TCTCTAAAAAGACTTAGGTGGTGTT 57.867 36.000 0.00 0.00 31.02 3.32
524 525 6.742559 TCTCTAAAAAGACTTAGGTGGTGT 57.257 37.500 0.00 0.00 31.02 4.16
525 526 7.878127 TGAATCTCTAAAAAGACTTAGGTGGTG 59.122 37.037 0.00 0.00 31.02 4.17
526 527 7.974504 TGAATCTCTAAAAAGACTTAGGTGGT 58.025 34.615 0.00 0.00 31.02 4.16
527 528 8.722394 GTTGAATCTCTAAAAAGACTTAGGTGG 58.278 37.037 0.00 0.00 31.02 4.61
528 529 9.495572 AGTTGAATCTCTAAAAAGACTTAGGTG 57.504 33.333 0.00 0.00 31.02 4.00
546 547 8.088981 ACTCCATATGTAATCCGTAGTTGAATC 58.911 37.037 1.24 0.00 0.00 2.52
550 551 9.537192 TTTTACTCCATATGTAATCCGTAGTTG 57.463 33.333 1.24 0.00 31.13 3.16
553 554 9.923143 TCATTTTACTCCATATGTAATCCGTAG 57.077 33.333 1.24 0.00 31.13 3.51
554 555 9.923143 CTCATTTTACTCCATATGTAATCCGTA 57.077 33.333 1.24 0.00 31.13 4.02
556 557 8.712363 CACTCATTTTACTCCATATGTAATCCG 58.288 37.037 1.24 0.00 31.13 4.18
565 566 9.817809 GTGTAGATTCACTCATTTTACTCCATA 57.182 33.333 0.00 0.00 35.68 2.74
566 567 8.543774 AGTGTAGATTCACTCATTTTACTCCAT 58.456 33.333 0.00 0.00 44.07 3.41
567 568 7.907389 AGTGTAGATTCACTCATTTTACTCCA 58.093 34.615 0.00 0.00 44.07 3.86
607 609 9.830294 CCATTACGAACTACATACGAATGTATA 57.170 33.333 0.00 0.00 45.33 1.47
609 611 7.929159 TCCATTACGAACTACATACGAATGTA 58.071 34.615 0.00 0.00 44.66 2.29
614 616 7.228108 AGAGATTCCATTACGAACTACATACGA 59.772 37.037 0.00 0.00 0.00 3.43
615 617 7.361127 AGAGATTCCATTACGAACTACATACG 58.639 38.462 0.00 0.00 0.00 3.06
620 622 9.453325 CTTTCTAGAGATTCCATTACGAACTAC 57.547 37.037 0.00 0.00 0.00 2.73
622 624 8.192110 GTCTTTCTAGAGATTCCATTACGAACT 58.808 37.037 0.00 0.00 0.00 3.01
625 627 7.883391 AGTCTTTCTAGAGATTCCATTACGA 57.117 36.000 0.00 0.00 0.00 3.43
642 646 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
643 647 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
650 654 6.718454 CAGTACTCCCTCCGTTCCTAAATATA 59.282 42.308 0.00 0.00 0.00 0.86
652 656 4.891756 CAGTACTCCCTCCGTTCCTAAATA 59.108 45.833 0.00 0.00 0.00 1.40
662 666 2.879646 GAGTCATACAGTACTCCCTCCG 59.120 54.545 0.00 0.00 36.86 4.63
673 677 4.161189 AGTGGGACAGAATGAGTCATACAG 59.839 45.833 5.94 1.73 41.80 2.74
674 678 4.096681 AGTGGGACAGAATGAGTCATACA 58.903 43.478 5.94 0.00 41.80 2.29
675 679 4.744795 AGTGGGACAGAATGAGTCATAC 57.255 45.455 5.94 0.00 41.80 2.39
677 681 3.584406 TCAAGTGGGACAGAATGAGTCAT 59.416 43.478 0.00 0.00 41.80 3.06
689 784 0.322008 CTCCTTGGCTCAAGTGGGAC 60.322 60.000 12.18 0.00 39.58 4.46
690 785 1.492133 CCTCCTTGGCTCAAGTGGGA 61.492 60.000 12.18 4.87 39.58 4.37
691 786 1.001641 CCTCCTTGGCTCAAGTGGG 60.002 63.158 12.18 9.93 39.58 4.61
692 787 0.111253 AACCTCCTTGGCTCAAGTGG 59.889 55.000 12.18 14.16 39.58 4.00
693 788 1.242076 CAACCTCCTTGGCTCAAGTG 58.758 55.000 12.18 5.93 39.58 3.16
694 789 0.111253 CCAACCTCCTTGGCTCAAGT 59.889 55.000 12.18 0.00 43.37 3.16
695 790 2.952714 CCAACCTCCTTGGCTCAAG 58.047 57.895 7.69 7.69 43.37 3.02
702 797 0.606401 ATGCACGACCAACCTCCTTG 60.606 55.000 0.00 0.00 0.00 3.61
703 798 0.110486 AATGCACGACCAACCTCCTT 59.890 50.000 0.00 0.00 0.00 3.36
704 799 0.110486 AAATGCACGACCAACCTCCT 59.890 50.000 0.00 0.00 0.00 3.69
705 800 1.816074 TAAATGCACGACCAACCTCC 58.184 50.000 0.00 0.00 0.00 4.30
706 801 3.907894 TTTAAATGCACGACCAACCTC 57.092 42.857 0.00 0.00 0.00 3.85
707 802 4.364860 GTTTTTAAATGCACGACCAACCT 58.635 39.130 0.00 0.00 0.00 3.50
708 803 3.180782 CGTTTTTAAATGCACGACCAACC 59.819 43.478 8.63 0.00 34.49 3.77
949 1076 1.676967 CTGCTGGGGAAAGTGAGGC 60.677 63.158 0.00 0.00 0.00 4.70
1119 1261 2.790791 CGAGATCAGGCGGGCTTCT 61.791 63.158 0.00 3.02 0.00 2.85
1125 1267 1.064946 GACTCACGAGATCAGGCGG 59.935 63.158 0.00 0.00 0.00 6.13
1143 1285 4.457496 ATCAGCAGGGCGGTCACG 62.457 66.667 0.00 0.00 44.63 4.35
1144 1286 1.676678 TAGATCAGCAGGGCGGTCAC 61.677 60.000 0.00 0.00 0.00 3.67
1145 1287 0.975556 TTAGATCAGCAGGGCGGTCA 60.976 55.000 0.00 0.00 0.00 4.02
1146 1288 0.530870 GTTAGATCAGCAGGGCGGTC 60.531 60.000 0.00 0.00 0.00 4.79
1160 1302 1.404986 CCCCATTTCGCGTGAGTTAGA 60.405 52.381 5.77 0.00 0.00 2.10
1407 1554 8.943002 AGGCACATAACTTAAACATACTGTAAC 58.057 33.333 0.00 0.00 0.00 2.50
1462 1610 6.670695 AGGAAACTTCAATATTTGTTGGCT 57.329 33.333 0.00 0.00 37.44 4.75
1494 1642 4.096984 GGCCACAAATATCAGAAGACAAGG 59.903 45.833 0.00 0.00 0.00 3.61
1495 1643 4.201851 CGGCCACAAATATCAGAAGACAAG 60.202 45.833 2.24 0.00 0.00 3.16
1507 1655 2.224426 ACTGAACTGACGGCCACAAATA 60.224 45.455 2.24 0.00 0.00 1.40
1570 1718 3.382546 GCATCAGTAAATTCAGGCCACAT 59.617 43.478 5.01 0.00 0.00 3.21
1576 1724 2.289002 GAGCGGCATCAGTAAATTCAGG 59.711 50.000 1.45 0.00 0.00 3.86
1592 1740 0.603707 TGAAGTGAAGGCTTGAGCGG 60.604 55.000 3.46 0.00 43.26 5.52
1597 1745 5.936956 ACTTTAGATCTGAAGTGAAGGCTTG 59.063 40.000 26.94 3.70 37.89 4.01
1598 1746 6.120507 ACTTTAGATCTGAAGTGAAGGCTT 57.879 37.500 26.94 0.00 37.89 4.35
1631 1790 4.588899 CACACAGAGATATGAACCCCAAA 58.411 43.478 0.00 0.00 0.00 3.28
1642 1801 1.161843 TCGACACGCACACAGAGATA 58.838 50.000 0.00 0.00 0.00 1.98
1654 1823 1.550065 CCAGCAGTAGAATCGACACG 58.450 55.000 0.00 0.00 0.00 4.49
1666 1835 0.748005 ACACGAAACAAGCCAGCAGT 60.748 50.000 0.00 0.00 0.00 4.40
1674 1843 1.801025 GCCAACCCAACACGAAACAAG 60.801 52.381 0.00 0.00 0.00 3.16
1723 1892 7.329226 GGCACTCGACTCTAGTTAGTATAGTAG 59.671 44.444 0.00 0.00 0.00 2.57
1728 1900 5.038651 AGGCACTCGACTCTAGTTAGTAT 57.961 43.478 0.00 0.00 0.00 2.12
1730 1902 3.353370 AGGCACTCGACTCTAGTTAGT 57.647 47.619 0.00 0.00 0.00 2.24
1731 1903 3.942748 AGAAGGCACTCGACTCTAGTTAG 59.057 47.826 0.00 0.00 38.49 2.34
1732 1904 3.690139 CAGAAGGCACTCGACTCTAGTTA 59.310 47.826 0.00 0.00 38.49 2.24
1733 1905 2.490115 CAGAAGGCACTCGACTCTAGTT 59.510 50.000 0.00 0.00 38.49 2.24
1759 1932 1.023513 GCAGCAGGCACCTAGTTCAG 61.024 60.000 0.00 0.00 43.97 3.02
1760 1933 1.003355 GCAGCAGGCACCTAGTTCA 60.003 57.895 0.00 0.00 43.97 3.18
1762 1935 2.046892 CGCAGCAGGCACCTAGTT 60.047 61.111 0.00 0.00 45.17 2.24
1763 1936 4.087892 CCGCAGCAGGCACCTAGT 62.088 66.667 0.00 0.00 45.17 2.57
1771 1944 1.434696 CAAATTAGGCCGCAGCAGG 59.565 57.895 0.00 0.00 42.56 4.85
1772 1945 1.315257 ACCAAATTAGGCCGCAGCAG 61.315 55.000 0.00 0.00 42.56 4.24
1773 1946 0.897863 AACCAAATTAGGCCGCAGCA 60.898 50.000 0.00 0.00 42.56 4.41
1774 1947 1.065551 CTAACCAAATTAGGCCGCAGC 59.934 52.381 0.00 0.00 37.26 5.25
1775 1948 1.065551 GCTAACCAAATTAGGCCGCAG 59.934 52.381 0.00 0.00 40.74 5.18
1776 1949 1.099689 GCTAACCAAATTAGGCCGCA 58.900 50.000 0.00 0.00 40.74 5.69
1777 1950 3.938653 GCTAACCAAATTAGGCCGC 57.061 52.632 0.00 0.00 40.74 6.53
1838 2011 2.557924 TGTTCAGCCTTGGCAAATACAG 59.442 45.455 14.54 0.00 0.00 2.74
1839 2012 2.557924 CTGTTCAGCCTTGGCAAATACA 59.442 45.455 14.54 10.59 0.00 2.29
1840 2013 2.558359 ACTGTTCAGCCTTGGCAAATAC 59.442 45.455 14.54 6.80 0.00 1.89
1841 2014 2.875296 ACTGTTCAGCCTTGGCAAATA 58.125 42.857 14.54 5.43 0.00 1.40
1842 2015 1.708341 ACTGTTCAGCCTTGGCAAAT 58.292 45.000 14.54 0.00 0.00 2.32
1888 2061 7.307396 CCATAACAGAACTGTCAACAACTACTG 60.307 40.741 7.93 0.00 44.13 2.74
1963 2143 8.833231 AAATTTCGTTCAGTCAAGAGATTCTA 57.167 30.769 0.00 0.00 0.00 2.10
1964 2144 7.736447 AAATTTCGTTCAGTCAAGAGATTCT 57.264 32.000 0.00 0.00 0.00 2.40
1982 2162 4.907579 CACCAGTTTTGTGCCAAAATTTC 58.092 39.130 13.75 4.68 0.00 2.17
1996 2176 7.848128 ACTATAGTATAACACAGCACCAGTTT 58.152 34.615 2.75 0.00 0.00 2.66
2004 2184 8.667463 GCTACTCCTACTATAGTATAACACAGC 58.333 40.741 12.98 12.81 0.00 4.40
2157 2370 0.398522 AGCGGGTGATGGAGGTGATA 60.399 55.000 0.00 0.00 0.00 2.15
2321 2591 8.969260 AAGAGATGAGCATATAAACATGTTGA 57.031 30.769 12.82 4.62 0.00 3.18
2447 2718 7.071447 TCCCAATAATGCATGATTTCAAGGAAT 59.929 33.333 6.54 0.00 0.00 3.01
2467 2738 8.477419 TTGAGAACTGTTTAGAAAATCCCAAT 57.523 30.769 0.00 0.00 0.00 3.16
2468 2739 7.559897 ACTTGAGAACTGTTTAGAAAATCCCAA 59.440 33.333 0.00 0.00 0.00 4.12
2469 2740 7.060421 ACTTGAGAACTGTTTAGAAAATCCCA 58.940 34.615 0.00 0.00 0.00 4.37
2470 2741 7.228706 TGACTTGAGAACTGTTTAGAAAATCCC 59.771 37.037 0.00 0.00 0.00 3.85
2476 2747 5.006358 GCGTTGACTTGAGAACTGTTTAGAA 59.994 40.000 0.00 0.00 0.00 2.10
2483 2754 1.581934 TGGCGTTGACTTGAGAACTG 58.418 50.000 0.00 0.00 0.00 3.16
2579 2853 4.074647 GGTTCCAAACCGGTGAGG 57.925 61.111 8.52 14.19 42.62 3.86
2607 2881 3.854784 GCAGCAATCAGAAACAGTCCAAC 60.855 47.826 0.00 0.00 0.00 3.77
2623 2897 0.183492 AGGGACACAAGAAGCAGCAA 59.817 50.000 0.00 0.00 0.00 3.91
2628 2902 1.200948 GCATTGAGGGACACAAGAAGC 59.799 52.381 0.00 0.00 42.96 3.86
2647 2921 7.009540 GCACCAAGTTCAAGTTTCAATATATGC 59.990 37.037 0.00 0.00 0.00 3.14
2670 2954 1.200020 AGCAATAAGGTGAAAGCGCAC 59.800 47.619 11.47 0.00 40.95 5.34
2703 2987 5.280945 ACTGAAAAACATTTGGTCATGTCG 58.719 37.500 0.00 0.00 36.30 4.35
2704 2988 6.640907 GGTACTGAAAAACATTTGGTCATGTC 59.359 38.462 0.00 0.00 36.30 3.06
2705 2989 6.323739 AGGTACTGAAAAACATTTGGTCATGT 59.676 34.615 0.00 0.00 36.55 3.21
2706 2990 6.748132 AGGTACTGAAAAACATTTGGTCATG 58.252 36.000 0.00 0.00 37.18 3.07
2707 2991 6.976934 AGGTACTGAAAAACATTTGGTCAT 57.023 33.333 0.00 0.00 37.18 3.06
2908 3233 2.550830 ATGCATTACGGACTGATCCC 57.449 50.000 0.00 0.00 42.83 3.85
3127 3452 5.339200 CCTCCAGAACCAAGCTCCTTAATTA 60.339 44.000 0.00 0.00 0.00 1.40
3177 3503 0.749454 GCATGATCCGCCCTGAAAGT 60.749 55.000 0.00 0.00 0.00 2.66
3178 3504 0.749091 TGCATGATCCGCCCTGAAAG 60.749 55.000 0.00 0.00 0.00 2.62
3179 3505 0.106569 ATGCATGATCCGCCCTGAAA 60.107 50.000 0.00 0.00 0.00 2.69
3180 3506 0.764271 TATGCATGATCCGCCCTGAA 59.236 50.000 10.16 0.00 0.00 3.02
3181 3507 0.986527 ATATGCATGATCCGCCCTGA 59.013 50.000 10.16 0.00 0.00 3.86
3182 3508 1.092348 CATATGCATGATCCGCCCTG 58.908 55.000 10.16 0.00 33.67 4.45
3302 3634 5.636903 ACCAGGCAATCTCATACATAACT 57.363 39.130 0.00 0.00 0.00 2.24
3326 3658 7.552687 TCCATACTTTGTTCTCATACATGGAAC 59.447 37.037 0.00 12.72 37.91 3.62
3327 3659 7.552687 GTCCATACTTTGTTCTCATACATGGAA 59.447 37.037 0.00 0.00 35.25 3.53
3348 3680 1.963515 GGCAAGTCAACCAAAGTCCAT 59.036 47.619 0.00 0.00 0.00 3.41
3405 3737 3.365064 CGTCAGCGTCAGTCTTCTTCTTA 60.365 47.826 0.00 0.00 0.00 2.10
3428 3760 9.680315 GTCGAGCTTTATAGACAGTAACATTAT 57.320 33.333 0.00 0.00 34.09 1.28
3582 3914 6.038356 CAGGAATGCAGTTTTTACATCCATC 58.962 40.000 0.00 0.00 0.00 3.51
3616 3948 7.337938 TGCATCATATACAACTCTTCTTCCAA 58.662 34.615 0.00 0.00 0.00 3.53
3722 4054 3.048337 AGCGTTTATTCCAACTCCGAA 57.952 42.857 0.00 0.00 0.00 4.30
4105 4437 4.680237 TTCTGCAGTGGTCGGGCG 62.680 66.667 14.67 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.