Multiple sequence alignment - TraesCS3D01G410700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G410700 chr3D 100.000 5958 0 0 1 5958 523749364 523755321 0.000000e+00 11003.0
1 TraesCS3D01G410700 chr3D 95.858 2656 73 8 1 2655 501841772 501839153 0.000000e+00 4261.0
2 TraesCS3D01G410700 chr3A 97.760 3304 73 1 2656 5958 495105432 495102129 0.000000e+00 5690.0
3 TraesCS3D01G410700 chrUn 97.702 3307 74 2 2653 5958 217906993 217910298 0.000000e+00 5685.0
4 TraesCS3D01G410700 chr3B 97.730 3304 73 2 2656 5958 6011438 6008136 0.000000e+00 5685.0
5 TraesCS3D01G410700 chr3B 97.671 3306 71 4 2656 5958 92297404 92294102 0.000000e+00 5674.0
6 TraesCS3D01G410700 chr3B 97.252 2656 71 2 1 2655 92300161 92297507 0.000000e+00 4499.0
7 TraesCS3D01G410700 chr3B 96.939 294 9 0 2256 2549 150436461 150436168 1.490000e-135 494.0
8 TraesCS3D01G410700 chr3B 96.970 132 3 1 1967 2098 576158239 576158369 2.800000e-53 220.0
9 TraesCS3D01G410700 chr3B 93.671 79 5 0 2119 2197 576158427 576158505 1.050000e-22 119.0
10 TraesCS3D01G410700 chr3B 88.312 77 9 0 2529 2605 743129784 743129708 6.360000e-15 93.5
11 TraesCS3D01G410700 chr2B 97.671 3306 74 3 2656 5958 234541832 234538527 0.000000e+00 5675.0
12 TraesCS3D01G410700 chr2B 96.466 2094 70 4 564 2655 357282356 357284447 0.000000e+00 3454.0
13 TraesCS3D01G410700 chr2B 95.783 166 6 1 2653 2818 357284547 357284711 3.540000e-67 267.0
14 TraesCS3D01G410700 chr1B 97.368 3305 84 3 2656 5958 619196004 619192701 0.000000e+00 5618.0
15 TraesCS3D01G410700 chr6D 97.279 3308 87 3 2653 5958 108484533 108487839 0.000000e+00 5607.0
16 TraesCS3D01G410700 chr6D 97.327 2656 65 3 1 2655 108481783 108484433 0.000000e+00 4506.0
17 TraesCS3D01G410700 chr6D 96.108 2107 77 3 550 2655 153946189 153944087 0.000000e+00 3432.0
18 TraesCS3D01G410700 chr4A 97.279 3307 89 1 2653 5958 67518823 67522129 0.000000e+00 5607.0
19 TraesCS3D01G410700 chr7A 97.246 3304 90 1 2656 5958 563522770 563519467 0.000000e+00 5596.0
20 TraesCS3D01G410700 chr7A 94.277 332 19 0 2073 2404 591506390 591506059 5.330000e-140 508.0
21 TraesCS3D01G410700 chr7D 96.575 2657 83 5 1 2655 44763969 44766619 0.000000e+00 4396.0
22 TraesCS3D01G410700 chr7D 96.574 2656 82 4 1 2655 307036640 307039287 0.000000e+00 4392.0
23 TraesCS3D01G410700 chr7D 97.707 2442 39 5 1 2429 382112634 382115071 0.000000e+00 4183.0
24 TraesCS3D01G410700 chr7D 96.263 1980 68 3 677 2655 307149372 307147398 0.000000e+00 3241.0
25 TraesCS3D01G410700 chr6B 92.747 2661 175 9 1 2659 320176062 320173418 0.000000e+00 3829.0
26 TraesCS3D01G410700 chr5A 94.898 588 28 2 1875 2462 628842500 628843085 0.000000e+00 918.0
27 TraesCS3D01G410700 chr5A 94.309 123 7 0 2533 2655 358784192 358784070 7.880000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G410700 chr3D 523749364 523755321 5957 False 11003.0 11003 100.0000 1 5958 1 chr3D.!!$F1 5957
1 TraesCS3D01G410700 chr3D 501839153 501841772 2619 True 4261.0 4261 95.8580 1 2655 1 chr3D.!!$R1 2654
2 TraesCS3D01G410700 chr3A 495102129 495105432 3303 True 5690.0 5690 97.7600 2656 5958 1 chr3A.!!$R1 3302
3 TraesCS3D01G410700 chrUn 217906993 217910298 3305 False 5685.0 5685 97.7020 2653 5958 1 chrUn.!!$F1 3305
4 TraesCS3D01G410700 chr3B 6008136 6011438 3302 True 5685.0 5685 97.7300 2656 5958 1 chr3B.!!$R1 3302
5 TraesCS3D01G410700 chr3B 92294102 92300161 6059 True 5086.5 5674 97.4615 1 5958 2 chr3B.!!$R4 5957
6 TraesCS3D01G410700 chr2B 234538527 234541832 3305 True 5675.0 5675 97.6710 2656 5958 1 chr2B.!!$R1 3302
7 TraesCS3D01G410700 chr2B 357282356 357284711 2355 False 1860.5 3454 96.1245 564 2818 2 chr2B.!!$F1 2254
8 TraesCS3D01G410700 chr1B 619192701 619196004 3303 True 5618.0 5618 97.3680 2656 5958 1 chr1B.!!$R1 3302
9 TraesCS3D01G410700 chr6D 108481783 108487839 6056 False 5056.5 5607 97.3030 1 5958 2 chr6D.!!$F1 5957
10 TraesCS3D01G410700 chr6D 153944087 153946189 2102 True 3432.0 3432 96.1080 550 2655 1 chr6D.!!$R1 2105
11 TraesCS3D01G410700 chr4A 67518823 67522129 3306 False 5607.0 5607 97.2790 2653 5958 1 chr4A.!!$F1 3305
12 TraesCS3D01G410700 chr7A 563519467 563522770 3303 True 5596.0 5596 97.2460 2656 5958 1 chr7A.!!$R1 3302
13 TraesCS3D01G410700 chr7D 44763969 44766619 2650 False 4396.0 4396 96.5750 1 2655 1 chr7D.!!$F1 2654
14 TraesCS3D01G410700 chr7D 307036640 307039287 2647 False 4392.0 4392 96.5740 1 2655 1 chr7D.!!$F2 2654
15 TraesCS3D01G410700 chr7D 382112634 382115071 2437 False 4183.0 4183 97.7070 1 2429 1 chr7D.!!$F3 2428
16 TraesCS3D01G410700 chr7D 307147398 307149372 1974 True 3241.0 3241 96.2630 677 2655 1 chr7D.!!$R1 1978
17 TraesCS3D01G410700 chr6B 320173418 320176062 2644 True 3829.0 3829 92.7470 1 2659 1 chr6B.!!$R1 2658
18 TraesCS3D01G410700 chr5A 628842500 628843085 585 False 918.0 918 94.8980 1875 2462 1 chr5A.!!$F1 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
213 214 0.257328 TCTGCAGGACCCAACACAAA 59.743 50.000 15.13 0.0 0.00 2.83 F
405 406 1.065764 CGGAGATGTCGGATGCGAA 59.934 57.895 12.07 2.2 0.00 4.70 F
805 806 1.271597 GGGCGCCATGATCCTTCTATT 60.272 52.381 30.85 0.0 0.00 1.73 F
2294 2316 1.228552 GGCAGCTTTCTTCCCACCA 60.229 57.895 0.00 0.0 0.00 4.17 F
2577 2600 1.288335 AGGAGGTCCTCATACGGAGTT 59.712 52.381 20.72 0.0 44.77 3.01 F
3412 3543 1.355381 TGGATGTGGGAGCATCAACTT 59.645 47.619 8.11 0.0 45.11 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 1762 0.106708 TGATACATTGGCTCGCTCCC 59.893 55.000 0.0 0.0 0.00 4.30 R
2294 2316 0.249322 CGACACACAAGGAAGGACGT 60.249 55.000 0.0 0.0 0.00 4.34 R
2679 2808 1.067915 CCCATCGTTTCGCCAACAAAT 60.068 47.619 0.0 0.0 34.68 2.32 R
4171 4305 0.178992 CCCAGTCAGCCACCTTTTCA 60.179 55.000 0.0 0.0 0.00 2.69 R
4339 4474 0.250513 GTCGTTCTTGGGCAGATCCT 59.749 55.000 0.0 0.0 34.39 3.24 R
4989 5128 0.526662 CGAGACGGAGCTTAACCTGT 59.473 55.000 0.0 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 5.807344 AGCTTAACAGACAAAGAAAACGAC 58.193 37.500 0.00 0.00 0.00 4.34
213 214 0.257328 TCTGCAGGACCCAACACAAA 59.743 50.000 15.13 0.00 0.00 2.83
405 406 1.065764 CGGAGATGTCGGATGCGAA 59.934 57.895 12.07 2.20 0.00 4.70
541 542 8.557029 GTTTGTTATTCGCTATTGGCTTAGTAT 58.443 33.333 0.00 0.00 39.13 2.12
595 596 3.181483 GGCAAGGCCTTGAACTTCATATG 60.181 47.826 42.96 18.10 46.69 1.78
805 806 1.271597 GGGCGCCATGATCCTTCTATT 60.272 52.381 30.85 0.00 0.00 1.73
1114 1126 1.697432 TGAACGGAGAAGTGGTGGAAT 59.303 47.619 0.00 0.00 0.00 3.01
1324 1336 1.299541 GGCCTCGTTATCCACACATG 58.700 55.000 0.00 0.00 0.00 3.21
1465 1477 1.818959 AACGTGTAACCCGCCTGCTA 61.819 55.000 0.00 0.00 0.00 3.49
1622 1634 4.643387 GAAGCGTGGTGGGCCTGT 62.643 66.667 4.53 0.00 35.27 4.00
1792 1814 8.008513 AGATACAGTCAACGGTATTAAGACAT 57.991 34.615 2.17 0.00 37.37 3.06
1963 1985 4.208686 CGCCCACCCGACTAGAGC 62.209 72.222 0.00 0.00 0.00 4.09
2050 2072 1.799181 CGATCGCGGAGTCACTGAATT 60.799 52.381 6.13 0.00 0.00 2.17
2078 2100 3.160872 CTCCCTTTCTTTCGGAGGC 57.839 57.895 0.00 0.00 39.69 4.70
2225 2247 2.664851 CCGAGCGGCAGTCAAACA 60.665 61.111 1.45 0.00 0.00 2.83
2294 2316 1.228552 GGCAGCTTTCTTCCCACCA 60.229 57.895 0.00 0.00 0.00 4.17
2577 2600 1.288335 AGGAGGTCCTCATACGGAGTT 59.712 52.381 20.72 0.00 44.77 3.01
2630 2653 2.827921 TGGGTCGAGTAAACTCCCTTAC 59.172 50.000 6.57 0.00 39.79 2.34
2631 2654 2.159324 GGGTCGAGTAAACTCCCTTACG 60.159 54.545 4.58 0.00 39.79 3.18
2632 2655 2.159324 GGTCGAGTAAACTCCCTTACGG 60.159 54.545 4.58 0.00 39.79 4.02
2633 2656 1.474077 TCGAGTAAACTCCCTTACGGC 59.526 52.381 4.58 0.00 39.79 5.68
2634 2657 1.470458 CGAGTAAACTCCCTTACGGCC 60.470 57.143 4.58 0.00 39.79 6.13
2778 2907 6.153680 GGGAAATAGGTCGAGATAGATGACAT 59.846 42.308 0.00 0.00 34.32 3.06
3030 3161 1.670811 ACTCATATTCAAAAGGCGCCG 59.329 47.619 23.20 6.78 0.00 6.46
3198 3329 4.362279 AGTGAACGTGTACGAAAAAGCTA 58.638 39.130 11.79 0.00 43.02 3.32
3223 3354 6.853720 TCGTAAAGTTTCATTGTTTGTTCCA 58.146 32.000 0.00 0.00 0.00 3.53
3226 3357 7.433719 CGTAAAGTTTCATTGTTTGTTCCATCA 59.566 33.333 0.00 0.00 0.00 3.07
3412 3543 1.355381 TGGATGTGGGAGCATCAACTT 59.645 47.619 8.11 0.00 45.11 2.66
3493 3626 2.056223 GCCAGGATGCATGCCAGTT 61.056 57.895 16.68 0.00 31.97 3.16
3494 3627 1.610554 GCCAGGATGCATGCCAGTTT 61.611 55.000 16.68 0.00 31.97 2.66
3583 3716 5.238432 ACACAACAATTTGCTTCTCGTATCA 59.762 36.000 0.00 0.00 36.00 2.15
3622 3755 2.203015 CCGGCAACCGTATCTGGG 60.203 66.667 5.17 0.00 46.80 4.45
3649 3782 7.562135 ACAACGATTAGTGGATATTGGTACTT 58.438 34.615 0.00 0.00 0.00 2.24
3737 3870 4.338879 AGACATTGATAGCAATATGGGGC 58.661 43.478 5.78 0.00 42.66 5.80
3798 3931 4.925054 ACAAAAGCATGCATATGTTGTCAC 59.075 37.500 21.98 0.00 36.65 3.67
3806 3939 5.806366 TGCATATGTTGTCACTGAAGATG 57.194 39.130 4.29 0.00 0.00 2.90
4051 4185 2.930826 AATCGGCATAGGTTAGGTGG 57.069 50.000 0.00 0.00 0.00 4.61
4095 4229 5.595952 GCCCATCTTTCTCCATATGAAAGTT 59.404 40.000 3.65 0.00 46.08 2.66
4271 4406 1.792006 ACGTCGAATGAAAGTGGTCC 58.208 50.000 0.00 0.00 0.00 4.46
4339 4474 2.777692 CCCTCCCTTATGTTTAGGAGCA 59.222 50.000 0.00 0.00 43.86 4.26
4646 4785 0.545548 AGGGTCCCCTCACTGACTTC 60.546 60.000 3.51 0.00 44.43 3.01
4838 4977 3.876914 TGAAGAGATGCGACAAAGTGTTT 59.123 39.130 0.00 0.00 0.00 2.83
4869 5008 4.220163 TGTGCAATGTCCTAATCAAATGCA 59.780 37.500 0.00 0.00 38.43 3.96
4887 5026 3.888583 TGCATAGTGGCATGATCAAAGA 58.111 40.909 0.00 0.00 39.25 2.52
4989 5128 0.387622 CGCCGTTCTTAACCGAGACA 60.388 55.000 0.00 0.00 0.00 3.41
5063 5202 3.545124 TTGGCGCATCTCGTTGGGT 62.545 57.895 10.83 0.00 41.07 4.51
5124 5263 1.497716 AGTTTCTTTTCCCGTCCCCTT 59.502 47.619 0.00 0.00 0.00 3.95
5129 5268 4.995058 TTCCCGTCCCCTTGCCCT 62.995 66.667 0.00 0.00 0.00 5.19
5379 5518 1.645034 CAATGTACTGCGTCCAGGAG 58.355 55.000 0.00 0.00 43.53 3.69
5778 5917 2.858862 TTCCGCGACAGGAAACCGA 61.859 57.895 8.23 0.00 46.36 4.69
5893 6034 6.447735 TCCTATTTAGTTTAGGGGTTAAGGCA 59.552 38.462 0.00 0.00 37.42 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 6.751514 TTCTTTGTCTGTTAAGCTTCACAA 57.248 33.333 14.11 8.77 0.00 3.33
35 36 2.240279 CCCTATACCCGGAAGTCTCTG 58.760 57.143 0.73 0.00 0.00 3.35
110 111 7.068716 GGGCAATAAGTATTCAGGAATTTGAGT 59.931 37.037 0.00 0.00 32.50 3.41
213 214 7.664552 TTTGCAGATTGGAAAGGATGAATAT 57.335 32.000 0.00 0.00 32.73 1.28
605 606 8.701895 ACTTTATCGGTATTCTGGATTGAGTAA 58.298 33.333 0.00 0.00 0.00 2.24
805 806 6.017192 AGTGCCCTCGATTATTCTATTCCTA 58.983 40.000 0.00 0.00 0.00 2.94
933 934 3.149196 ACCACCAGTACTCAAAATGCAG 58.851 45.455 0.00 0.00 0.00 4.41
1114 1126 0.321210 CCAGTATGTGGTTCCGCACA 60.321 55.000 7.26 0.00 42.17 4.57
1421 1433 2.887568 GCCGAGATGTGAGGTGCG 60.888 66.667 0.00 0.00 0.00 5.34
1465 1477 4.524328 GGAAATTCAGTGGTTGACTTGGAT 59.476 41.667 0.00 0.00 34.94 3.41
1622 1634 1.767672 CTCCCTATGCTCCCTGGCA 60.768 63.158 0.00 0.00 46.63 4.92
1660 1673 2.124942 GCTTCCCCTGGCTCTTCG 60.125 66.667 0.00 0.00 0.00 3.79
1739 1760 2.056906 ATACATTGGCTCGCTCCCCC 62.057 60.000 0.00 0.00 0.00 5.40
1740 1761 0.603975 GATACATTGGCTCGCTCCCC 60.604 60.000 0.00 0.00 0.00 4.81
1741 1762 0.106708 TGATACATTGGCTCGCTCCC 59.893 55.000 0.00 0.00 0.00 4.30
1742 1763 1.953559 TTGATACATTGGCTCGCTCC 58.046 50.000 0.00 0.00 0.00 4.70
1963 1985 7.736031 TTGTACTCGATTAATTTCTCAGTCG 57.264 36.000 0.00 0.00 0.00 4.18
2050 2072 3.579742 AAGAAAGGGAGGGAGGACTTA 57.420 47.619 0.00 0.00 0.00 2.24
2225 2247 1.376543 CATCTTGCATTCACGCCTCT 58.623 50.000 0.00 0.00 0.00 3.69
2294 2316 0.249322 CGACACACAAGGAAGGACGT 60.249 55.000 0.00 0.00 0.00 4.34
2597 2620 2.025226 ACTCGACCCATTCTCCAGTCTA 60.025 50.000 0.00 0.00 0.00 2.59
2630 2653 1.257936 CGTCTGTGATTTAATCGGCCG 59.742 52.381 22.12 22.12 0.00 6.13
2631 2654 2.540101 CTCGTCTGTGATTTAATCGGCC 59.460 50.000 0.00 0.00 0.00 6.13
2632 2655 2.540101 CCTCGTCTGTGATTTAATCGGC 59.460 50.000 0.23 0.00 0.00 5.54
2633 2656 3.797256 GTCCTCGTCTGTGATTTAATCGG 59.203 47.826 0.23 0.00 0.00 4.18
2634 2657 4.421058 TGTCCTCGTCTGTGATTTAATCG 58.579 43.478 0.23 0.00 0.00 3.34
2679 2808 1.067915 CCCATCGTTTCGCCAACAAAT 60.068 47.619 0.00 0.00 34.68 2.32
2778 2907 6.575649 CGGTAAGGAAGAGGATAAAAAGGTGA 60.576 42.308 0.00 0.00 0.00 4.02
2856 2986 2.132686 GAAAGGGGGCTGGGTTCTATA 58.867 52.381 0.00 0.00 0.00 1.31
3109 3240 1.754803 CATAACACGGCTCTCCCACTA 59.245 52.381 0.00 0.00 0.00 2.74
3198 3329 7.484975 TGGAACAAACAATGAAACTTTACGAT 58.515 30.769 0.00 0.00 31.92 3.73
3223 3354 8.307483 CGTAGAAACATAGATAGGGTCAATGAT 58.693 37.037 0.00 0.00 0.00 2.45
3226 3357 7.834881 TCGTAGAAACATAGATAGGGTCAAT 57.165 36.000 0.00 0.00 0.00 2.57
3362 3493 5.466728 TGAGTAGTTGAAGCAAGTGAATGAC 59.533 40.000 0.00 0.00 0.00 3.06
3412 3543 1.953686 CTCAAAAGCCCAAAGGAACGA 59.046 47.619 0.00 0.00 33.47 3.85
3493 3626 1.548719 CACTCCACCAGGTCGTATGAA 59.451 52.381 0.00 0.00 35.89 2.57
3494 3627 1.182667 CACTCCACCAGGTCGTATGA 58.817 55.000 0.00 0.00 35.89 2.15
3583 3716 5.577164 CGGTTGACATCTCTTCTAATTCGTT 59.423 40.000 0.00 0.00 0.00 3.85
3622 3755 6.920569 ACCAATATCCACTAATCGTTGTTC 57.079 37.500 0.00 0.00 0.00 3.18
3649 3782 0.816373 TTTGCTTGCTGTGCAGTGAA 59.184 45.000 0.00 0.00 40.61 3.18
3798 3931 3.144506 AGGCTTCACACAACATCTTCAG 58.855 45.455 0.00 0.00 0.00 3.02
3806 3939 1.604278 GTCTCCAAGGCTTCACACAAC 59.396 52.381 0.00 0.00 0.00 3.32
3980 4114 4.973055 CGGTTCCGACGTGCCCAA 62.973 66.667 5.19 0.00 0.00 4.12
4051 4185 4.278419 GGGCTTACCATGTTCCATCAATAC 59.722 45.833 0.00 0.00 39.85 1.89
4095 4229 0.390492 CATCTCTATGTGCCCGCAGA 59.610 55.000 0.00 0.00 0.00 4.26
4171 4305 0.178992 CCCAGTCAGCCACCTTTTCA 60.179 55.000 0.00 0.00 0.00 2.69
4244 4378 2.125673 CATTCGACGTTCCGGGCT 60.126 61.111 0.00 0.00 0.00 5.19
4339 4474 0.250513 GTCGTTCTTGGGCAGATCCT 59.749 55.000 0.00 0.00 34.39 3.24
4407 4542 5.532779 GTGATGGTTGAGGAGTTTCTTTCTT 59.467 40.000 0.00 0.00 0.00 2.52
4636 4775 3.691342 CCCGGGCGAAGTCAGTGA 61.691 66.667 8.08 0.00 0.00 3.41
4646 4785 3.615509 TTTCACTTAGGCCCGGGCG 62.616 63.158 38.22 26.65 43.06 6.13
4806 4945 5.220381 GTCGCATCTCTTCAATACGGATAA 58.780 41.667 0.00 0.00 0.00 1.75
4869 5008 4.406648 TCGTCTTTGATCATGCCACTAT 57.593 40.909 0.00 0.00 0.00 2.12
4887 5026 8.871851 ATGGAGGACATAGTTTACGATCATCGT 61.872 40.741 18.45 18.45 46.67 3.73
4900 5039 3.823873 GAGATCGTGATGGAGGACATAGT 59.176 47.826 0.00 0.00 40.72 2.12
4989 5128 0.526662 CGAGACGGAGCTTAACCTGT 59.473 55.000 0.00 0.00 0.00 4.00
5013 5152 0.544833 TTACTCCTAACCCCACGGCA 60.545 55.000 0.00 0.00 0.00 5.69
5063 5202 1.547675 GGTTCCCAATGCTTCTCCACA 60.548 52.381 0.00 0.00 0.00 4.17
5148 5287 2.637872 AGTTGATTCCTCCGAAGAACCA 59.362 45.455 0.00 0.00 0.00 3.67
5379 5518 3.793144 CCGGCAAGCTCGTTCTGC 61.793 66.667 0.00 0.00 0.00 4.26
5778 5917 8.968969 CCTTATGTTCACTTCCTAACTAGTAGT 58.031 37.037 0.00 0.00 0.00 2.73
5930 6071 2.361104 GCAAGTGAATGGGGCCGA 60.361 61.111 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.