Multiple sequence alignment - TraesCS3D01G409700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G409700 chr3D 100.000 3218 0 0 1 3218 523407905 523411122 0.000000e+00 5943.0
1 TraesCS3D01G409700 chr3D 82.062 2503 389 38 1 2473 523334608 523337080 0.000000e+00 2080.0
2 TraesCS3D01G409700 chr3D 80.141 2407 406 47 2 2383 523555360 523557719 0.000000e+00 1731.0
3 TraesCS3D01G409700 chr3D 78.683 2172 414 36 55 2196 523569664 523571816 0.000000e+00 1400.0
4 TraesCS3D01G409700 chr3D 81.860 1527 250 18 1 1516 523560202 523561712 0.000000e+00 1260.0
5 TraesCS3D01G409700 chr3D 96.970 495 14 1 2724 3218 300647565 300647072 0.000000e+00 830.0
6 TraesCS3D01G409700 chr3D 96.400 500 16 2 2719 3218 249431648 249431151 0.000000e+00 822.0
7 TraesCS3D01G409700 chr3D 82.759 667 105 8 1568 2227 523562704 523563367 1.290000e-163 586.0
8 TraesCS3D01G409700 chr3D 94.574 258 11 2 2465 2722 256979229 256979483 2.330000e-106 396.0
9 TraesCS3D01G409700 chr3D 91.606 274 17 6 2454 2725 68049911 68049642 1.090000e-99 374.0
10 TraesCS3D01G409700 chr3D 79.497 517 76 20 1877 2378 523381295 523381796 1.110000e-89 340.0
11 TraesCS3D01G409700 chr3A 82.283 2506 376 40 1 2473 658303592 658306062 0.000000e+00 2106.0
12 TraesCS3D01G409700 chr3A 82.105 2470 407 27 11 2461 658289094 658291547 0.000000e+00 2080.0
13 TraesCS3D01G409700 chr3A 79.062 2240 407 53 46 2246 36071250 36069034 0.000000e+00 1482.0
14 TraesCS3D01G409700 chr3B 81.771 2507 397 34 1 2473 642215520 642213040 0.000000e+00 2043.0
15 TraesCS3D01G409700 chr3B 81.518 2213 370 30 2 2193 690430523 690432717 0.000000e+00 1784.0
16 TraesCS3D01G409700 chr3B 80.929 2218 381 31 226 2418 689007191 689004991 0.000000e+00 1714.0
17 TraesCS3D01G409700 chr3B 80.411 2287 392 44 8 2259 689352054 689349789 0.000000e+00 1690.0
18 TraesCS3D01G409700 chr3B 79.356 2330 426 39 2 2306 690442842 690445141 0.000000e+00 1587.0
19 TraesCS3D01G409700 chr3B 79.461 2264 424 29 2 2245 690446938 690449180 0.000000e+00 1567.0
20 TraesCS3D01G409700 chr3B 78.706 2287 423 49 3 2246 43527642 43525377 0.000000e+00 1467.0
21 TraesCS3D01G409700 chr3B 78.280 2325 460 33 2 2299 690459913 690462219 0.000000e+00 1454.0
22 TraesCS3D01G409700 chr3B 88.115 244 7 5 2223 2461 690432715 690432941 1.470000e-68 270.0
23 TraesCS3D01G409700 chr3B 100.000 29 0 0 2433 2461 689004994 689004966 2.000000e-03 54.7
24 TraesCS3D01G409700 chrUn 80.356 2250 398 29 1 2228 330561123 330563350 0.000000e+00 1666.0
25 TraesCS3D01G409700 chrUn 81.537 2004 328 31 440 2415 342677751 342679740 0.000000e+00 1613.0
26 TraesCS3D01G409700 chrUn 83.680 1011 148 14 1415 2415 405666919 405667922 0.000000e+00 937.0
27 TraesCS3D01G409700 chrUn 83.333 336 48 7 659 990 479623832 479624163 1.450000e-78 303.0
28 TraesCS3D01G409700 chrUn 88.095 252 19 6 2230 2473 353196070 353196318 4.060000e-74 289.0
29 TraesCS3D01G409700 chrUn 88.095 252 19 6 2230 2473 471390039 471389791 4.060000e-74 289.0
30 TraesCS3D01G409700 chrUn 77.494 431 87 7 1 429 454390163 454389741 1.920000e-62 250.0
31 TraesCS3D01G409700 chr4D 97.200 500 12 2 2719 3218 379995066 379994569 0.000000e+00 845.0
32 TraesCS3D01G409700 chr1D 97.374 495 12 1 2724 3218 377659984 377659491 0.000000e+00 841.0
33 TraesCS3D01G409700 chr1D 96.800 500 15 1 2719 3218 174325023 174325521 0.000000e+00 833.0
34 TraesCS3D01G409700 chr1D 96.976 496 13 2 2723 3218 337253930 337253437 0.000000e+00 832.0
35 TraesCS3D01G409700 chr1D 96.512 258 9 0 2465 2722 186103352 186103609 8.250000e-116 427.0
36 TraesCS3D01G409700 chr5D 96.600 500 16 1 2719 3218 225948604 225949102 0.000000e+00 828.0
37 TraesCS3D01G409700 chr5D 96.586 498 15 2 2721 3218 92041484 92040989 0.000000e+00 824.0
38 TraesCS3D01G409700 chr5D 97.683 259 6 0 2464 2722 58507925 58507667 2.280000e-121 446.0
39 TraesCS3D01G409700 chr7B 96.600 500 14 3 2719 3218 417738898 417739394 0.000000e+00 826.0
40 TraesCS3D01G409700 chr7D 98.054 257 5 0 2466 2722 514067417 514067161 6.330000e-122 448.0
41 TraesCS3D01G409700 chr7A 96.139 259 9 1 2464 2722 733497793 733497536 3.840000e-114 422.0
42 TraesCS3D01G409700 chr6D 94.163 257 11 4 2463 2717 333376030 333375776 3.890000e-104 388.0
43 TraesCS3D01G409700 chr4A 92.748 262 18 1 2465 2726 620581211 620580951 8.430000e-101 377.0
44 TraesCS3D01G409700 chr6B 92.664 259 17 2 2464 2722 4225880 4226136 3.920000e-99 372.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G409700 chr3D 523407905 523411122 3217 False 5943.000000 5943 100.000000 1 3218 1 chr3D.!!$F4 3217
1 TraesCS3D01G409700 chr3D 523334608 523337080 2472 False 2080.000000 2080 82.062000 1 2473 1 chr3D.!!$F2 2472
2 TraesCS3D01G409700 chr3D 523569664 523571816 2152 False 1400.000000 1400 78.683000 55 2196 1 chr3D.!!$F5 2141
3 TraesCS3D01G409700 chr3D 523555360 523563367 8007 False 1192.333333 1731 81.586667 1 2383 3 chr3D.!!$F6 2382
4 TraesCS3D01G409700 chr3D 523381295 523381796 501 False 340.000000 340 79.497000 1877 2378 1 chr3D.!!$F3 501
5 TraesCS3D01G409700 chr3A 658303592 658306062 2470 False 2106.000000 2106 82.283000 1 2473 1 chr3A.!!$F2 2472
6 TraesCS3D01G409700 chr3A 658289094 658291547 2453 False 2080.000000 2080 82.105000 11 2461 1 chr3A.!!$F1 2450
7 TraesCS3D01G409700 chr3A 36069034 36071250 2216 True 1482.000000 1482 79.062000 46 2246 1 chr3A.!!$R1 2200
8 TraesCS3D01G409700 chr3B 642213040 642215520 2480 True 2043.000000 2043 81.771000 1 2473 1 chr3B.!!$R2 2472
9 TraesCS3D01G409700 chr3B 689349789 689352054 2265 True 1690.000000 1690 80.411000 8 2259 1 chr3B.!!$R3 2251
10 TraesCS3D01G409700 chr3B 690442842 690449180 6338 False 1577.000000 1587 79.408500 2 2306 2 chr3B.!!$F3 2304
11 TraesCS3D01G409700 chr3B 43525377 43527642 2265 True 1467.000000 1467 78.706000 3 2246 1 chr3B.!!$R1 2243
12 TraesCS3D01G409700 chr3B 690459913 690462219 2306 False 1454.000000 1454 78.280000 2 2299 1 chr3B.!!$F1 2297
13 TraesCS3D01G409700 chr3B 690430523 690432941 2418 False 1027.000000 1784 84.816500 2 2461 2 chr3B.!!$F2 2459
14 TraesCS3D01G409700 chr3B 689004966 689007191 2225 True 884.350000 1714 90.464500 226 2461 2 chr3B.!!$R4 2235
15 TraesCS3D01G409700 chrUn 330561123 330563350 2227 False 1666.000000 1666 80.356000 1 2228 1 chrUn.!!$F1 2227
16 TraesCS3D01G409700 chrUn 342677751 342679740 1989 False 1613.000000 1613 81.537000 440 2415 1 chrUn.!!$F2 1975
17 TraesCS3D01G409700 chrUn 405666919 405667922 1003 False 937.000000 937 83.680000 1415 2415 1 chrUn.!!$F4 1000

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.039978 CTCCTACTATGCGCCGTCAG 60.040 60.0 4.18 0.0 0.00 3.51 F
1036 5172 0.168788 CCAGTTGTATGGCACGCTTG 59.831 55.0 0.00 0.0 32.48 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1796 5939 0.251832 TTCTCCCGAGAGCTGGTTCT 60.252 55.0 0.0 0.0 40.22 3.01 R
2573 6794 0.030638 TTTGTCTTTGCTCCGCTTGC 59.969 50.0 0.0 0.0 0.00 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 0.039978 CTCCTACTATGCGCCGTCAG 60.040 60.000 4.18 0.00 0.00 3.51
96 103 1.337167 GCACTTGTGAAATGGAAGGCC 60.337 52.381 4.79 0.00 0.00 5.19
138 148 2.169769 GTCCCTTGGATCATGGTCGTTA 59.830 50.000 0.00 0.00 32.73 3.18
162 4268 1.073722 CTCCACCAGCCTTTGCAGA 59.926 57.895 0.00 0.00 41.13 4.26
166 4272 1.304713 ACCAGCCTTTGCAGATGGG 60.305 57.895 12.71 3.32 41.13 4.00
202 4308 0.179048 CTCGGCTGGGCACATCATAA 60.179 55.000 0.00 0.00 0.00 1.90
224 4330 4.423625 GGCTCAACCTTACCATAGTCAT 57.576 45.455 0.00 0.00 34.51 3.06
249 4355 0.606604 ACGGCACACTCGATAGGTTT 59.393 50.000 0.00 0.00 0.00 3.27
252 4358 2.738643 CGGCACACTCGATAGGTTTGAT 60.739 50.000 0.00 0.00 0.00 2.57
261 4367 3.118920 TCGATAGGTTTGATTTCTCGGCA 60.119 43.478 0.00 0.00 0.00 5.69
268 4374 2.806945 TGATTTCTCGGCATTTCCCT 57.193 45.000 0.00 0.00 0.00 4.20
276 4382 1.562008 TCGGCATTTCCCTACATGGAA 59.438 47.619 0.00 0.00 42.62 3.53
319 4425 2.880890 GGTCTGTATGGCATCATTCCAC 59.119 50.000 1.65 0.00 36.26 4.02
334 4440 2.350895 CACCAGGGATCGGCAACA 59.649 61.111 0.00 0.00 0.00 3.33
411 4517 4.189188 CGCAGCATTGGCCAGCTC 62.189 66.667 16.22 10.45 42.56 4.09
429 4535 3.007940 AGCTCATGCACCTTGTTGTACTA 59.992 43.478 0.00 0.00 42.74 1.82
475 4581 3.327757 TGGCACACTACCTGAAGAGATTT 59.672 43.478 0.00 0.00 0.00 2.17
570 4679 4.604114 CTCACGAAGCTCCATGCA 57.396 55.556 0.00 0.00 45.94 3.96
606 4718 3.087031 CAACAATCTGACAGGGAGCATT 58.913 45.455 1.81 0.00 0.00 3.56
630 4742 4.763793 CCACTTGAGATTGGAAACATGACT 59.236 41.667 0.00 0.00 42.32 3.41
648 4760 2.486472 CTGAACTGCAGGAGTTGGAT 57.514 50.000 19.93 0.00 45.48 3.41
656 4768 3.565307 TGCAGGAGTTGGATTTTTCAGT 58.435 40.909 0.00 0.00 0.00 3.41
657 4769 3.318839 TGCAGGAGTTGGATTTTTCAGTG 59.681 43.478 0.00 0.00 0.00 3.66
674 4786 2.755103 CAGTGAACTATTTGGAAGGGCC 59.245 50.000 0.00 0.00 37.10 5.80
687 4799 4.217159 GGGCCGCTACCAGGTACG 62.217 72.222 12.25 12.25 0.00 3.67
693 4805 0.592148 CGCTACCAGGTACGATCTCC 59.408 60.000 13.41 0.00 0.00 3.71
713 4825 4.609301 TCCCATTTGATAAAACTCCAGGG 58.391 43.478 0.00 0.00 0.00 4.45
726 4838 2.299297 ACTCCAGGGTTTACTTCTGTCG 59.701 50.000 0.00 0.00 0.00 4.35
796 4914 4.279420 GCCTCCTGGATATGGTTGAAATTC 59.721 45.833 0.00 0.00 34.57 2.17
798 4916 5.533903 CCTCCTGGATATGGTTGAAATTCAG 59.466 44.000 0.00 0.00 34.57 3.02
813 4937 5.466728 TGAAATTCAGAGGAACAACTTCTCG 59.533 40.000 0.00 0.00 35.46 4.04
852 4976 3.560025 CCATTTGTGTAGGAGGAGCACTT 60.560 47.826 0.00 0.00 34.52 3.16
870 4994 1.000163 CTTCGTACTGTCAGTGCTGGT 60.000 52.381 16.03 0.00 0.00 4.00
892 5016 5.708230 GGTCATAATGGATTTACCGGCATTA 59.292 40.000 0.00 6.89 42.61 1.90
927 5051 1.319614 AAAACTGCACAACCCTGCGT 61.320 50.000 0.00 0.00 40.31 5.24
971 5095 1.133790 CATTGTTGCAGAGCTAAGGGC 59.866 52.381 0.00 0.00 42.19 5.19
1008 5144 3.186283 TCCTCTTACCACCATGGCTTTA 58.814 45.455 13.04 0.00 42.67 1.85
1036 5172 0.168788 CCAGTTGTATGGCACGCTTG 59.831 55.000 0.00 0.00 32.48 4.01
1077 5213 9.462606 AAGGATTTCTTTTGTAACTATACCCAG 57.537 33.333 0.00 0.00 29.99 4.45
1112 5248 5.844004 AGACCTATCAAGTAATGCCTTACG 58.156 41.667 6.28 0.00 41.77 3.18
1165 5301 4.202440 TGGCAAATTTGGTGTTCATGGATT 60.202 37.500 19.47 0.00 0.00 3.01
1178 5314 4.299586 TCATGGATTTGTCCAGCAACTA 57.700 40.909 3.33 0.00 43.86 2.24
1219 5355 2.739943 TCTCGAGGACATGTGGAGATT 58.260 47.619 13.56 0.00 0.00 2.40
1257 5393 7.480760 ACACCTAGCCAATAACAATTTCATT 57.519 32.000 0.00 0.00 0.00 2.57
1291 5427 5.928264 CCTTTGGGTCTTAAGAAATGCAAAG 59.072 40.000 6.78 0.00 0.00 2.77
1335 5471 5.191722 TGGAGGCAATAATTTCTCAGGTACT 59.808 40.000 0.00 0.00 43.88 2.73
1428 5565 4.389374 GTGTCATACCCCACCAGATATTG 58.611 47.826 0.00 0.00 0.00 1.90
1647 5790 3.569701 CAGGTATAGCCGGCATTGATTTT 59.430 43.478 31.54 7.63 43.70 1.82
1752 5895 5.429762 TCATCTGTCAGGTCTTATTCCCAAT 59.570 40.000 0.00 0.00 0.00 3.16
1754 5897 4.080356 TCTGTCAGGTCTTATTCCCAATGG 60.080 45.833 0.00 0.00 0.00 3.16
1774 5917 2.159198 GGCATTGGCAATCTTGTACTGG 60.159 50.000 10.36 0.00 43.71 4.00
1794 5937 2.084546 GTGGAATCCTTGGACCTTTCG 58.915 52.381 0.00 0.00 0.00 3.46
1796 5939 1.613255 GGAATCCTTGGACCTTTCGCA 60.613 52.381 0.00 0.00 0.00 5.10
1803 5946 0.250295 TGGACCTTTCGCAGAACCAG 60.250 55.000 0.00 0.00 45.90 4.00
1846 5989 0.320160 CTTTGCAGCTTTGAAGGCCC 60.320 55.000 0.00 0.00 0.00 5.80
1886 6029 6.698380 TCTCAACTAACAAGTTATCAGGGAC 58.302 40.000 0.00 0.00 0.00 4.46
1890 6033 5.903810 ACTAACAAGTTATCAGGGACGATC 58.096 41.667 0.00 0.00 0.00 3.69
1937 6080 5.237815 GCTTGATGACCCATCGATATACAA 58.762 41.667 0.00 0.00 43.14 2.41
1944 6087 7.956420 TGACCCATCGATATACAACAATAAC 57.044 36.000 0.00 0.00 0.00 1.89
1947 6090 5.350365 CCCATCGATATACAACAATAACCCG 59.650 44.000 0.00 0.00 0.00 5.28
1995 6138 1.404748 TGTGTAAACTCGTCGACACCA 59.595 47.619 17.16 2.95 41.20 4.17
1998 6141 1.788886 GTAAACTCGTCGACACCAACC 59.211 52.381 17.16 0.00 0.00 3.77
2014 6157 2.093764 CCAACCCAAACTGAAACAAGCA 60.094 45.455 0.00 0.00 0.00 3.91
2256 6413 6.065374 TGTTGTTGAAGTAATGGTGTATGGT 58.935 36.000 0.00 0.00 0.00 3.55
2273 6433 4.727507 ATGGTGTCCTATATCGAGCATC 57.272 45.455 0.00 0.00 0.00 3.91
2316 6492 2.291365 GTTAGTTGGACGGTTGGTTGT 58.709 47.619 0.00 0.00 0.00 3.32
2317 6493 3.118482 TGTTAGTTGGACGGTTGGTTGTA 60.118 43.478 0.00 0.00 0.00 2.41
2318 6494 2.713863 AGTTGGACGGTTGGTTGTAA 57.286 45.000 0.00 0.00 0.00 2.41
2319 6495 3.002038 AGTTGGACGGTTGGTTGTAAA 57.998 42.857 0.00 0.00 0.00 2.01
2320 6496 3.354467 AGTTGGACGGTTGGTTGTAAAA 58.646 40.909 0.00 0.00 0.00 1.52
2321 6497 3.379057 AGTTGGACGGTTGGTTGTAAAAG 59.621 43.478 0.00 0.00 0.00 2.27
2322 6498 3.002038 TGGACGGTTGGTTGTAAAAGT 57.998 42.857 0.00 0.00 0.00 2.66
2323 6499 4.148128 TGGACGGTTGGTTGTAAAAGTA 57.852 40.909 0.00 0.00 0.00 2.24
2324 6500 3.876320 TGGACGGTTGGTTGTAAAAGTAC 59.124 43.478 0.00 0.00 0.00 2.73
2325 6501 4.129380 GGACGGTTGGTTGTAAAAGTACT 58.871 43.478 0.00 0.00 0.00 2.73
2326 6502 4.576053 GGACGGTTGGTTGTAAAAGTACTT 59.424 41.667 1.12 1.12 0.00 2.24
2327 6503 5.488645 ACGGTTGGTTGTAAAAGTACTTG 57.511 39.130 9.34 0.00 0.00 3.16
2328 6504 4.201940 ACGGTTGGTTGTAAAAGTACTTGC 60.202 41.667 9.34 3.66 0.00 4.01
2329 6505 4.613944 GGTTGGTTGTAAAAGTACTTGCC 58.386 43.478 9.34 5.88 0.00 4.52
2330 6506 4.098196 GGTTGGTTGTAAAAGTACTTGCCA 59.902 41.667 9.34 8.25 0.00 4.92
2331 6507 5.278604 GTTGGTTGTAAAAGTACTTGCCAG 58.721 41.667 9.34 0.00 32.11 4.85
2485 6706 2.810439 TTTTTGGAAATGGAGGCGTG 57.190 45.000 0.00 0.00 0.00 5.34
2486 6707 0.316841 TTTTGGAAATGGAGGCGTGC 59.683 50.000 0.00 0.00 0.00 5.34
2487 6708 1.531739 TTTGGAAATGGAGGCGTGCC 61.532 55.000 1.67 1.67 0.00 5.01
2488 6709 3.140814 GGAAATGGAGGCGTGCCC 61.141 66.667 7.39 0.00 36.58 5.36
2490 6711 4.759205 AAATGGAGGCGTGCCCCC 62.759 66.667 7.39 5.75 36.58 5.40
2504 6725 3.882326 CCCCGGCCTCTGCATCAT 61.882 66.667 0.00 0.00 40.13 2.45
2505 6726 2.519622 CCCCGGCCTCTGCATCATA 61.520 63.158 0.00 0.00 40.13 2.15
2506 6727 1.451504 CCCGGCCTCTGCATCATAA 59.548 57.895 0.00 0.00 40.13 1.90
2507 6728 0.037303 CCCGGCCTCTGCATCATAAT 59.963 55.000 0.00 0.00 40.13 1.28
2508 6729 1.162698 CCGGCCTCTGCATCATAATG 58.837 55.000 0.00 0.00 40.13 1.90
2509 6730 1.271001 CCGGCCTCTGCATCATAATGA 60.271 52.381 0.00 0.00 40.13 2.57
2510 6731 2.617276 CCGGCCTCTGCATCATAATGAT 60.617 50.000 0.00 0.00 37.65 2.45
2526 6747 4.409718 AATGATGCATGCAGCCATTTTA 57.590 36.364 31.30 13.51 44.83 1.52
2528 6749 4.409718 TGATGCATGCAGCCATTTTATT 57.590 36.364 31.30 8.21 44.83 1.40
2531 6752 6.346896 TGATGCATGCAGCCATTTTATTAAA 58.653 32.000 31.30 6.79 44.83 1.52
2532 6753 6.822170 TGATGCATGCAGCCATTTTATTAAAA 59.178 30.769 31.30 6.57 44.83 1.52
2533 6754 7.336176 TGATGCATGCAGCCATTTTATTAAAAA 59.664 29.630 31.30 6.12 44.83 1.94
2534 6755 7.074507 TGCATGCAGCCATTTTATTAAAAAG 57.925 32.000 18.46 1.94 44.83 2.27
2536 6757 7.148440 TGCATGCAGCCATTTTATTAAAAAGTC 60.148 33.333 18.46 0.00 44.83 3.01
2537 6758 7.064966 GCATGCAGCCATTTTATTAAAAAGTCT 59.935 33.333 14.21 0.00 36.20 3.24
2538 6759 8.598075 CATGCAGCCATTTTATTAAAAAGTCTC 58.402 33.333 5.73 0.00 37.97 3.36
2539 6760 6.806249 TGCAGCCATTTTATTAAAAAGTCTCG 59.194 34.615 5.73 0.00 37.97 4.04
2542 6763 9.065871 CAGCCATTTTATTAAAAAGTCTCGAAG 57.934 33.333 5.73 0.00 37.97 3.79
2543 6764 9.010029 AGCCATTTTATTAAAAAGTCTCGAAGA 57.990 29.630 5.73 0.00 37.97 2.87
2551 6772 7.811117 TTAAAAAGTCTCGAAGAATCCCAAA 57.189 32.000 0.00 0.00 34.09 3.28
2553 6774 4.625607 AAGTCTCGAAGAATCCCAAAGT 57.374 40.909 0.00 0.00 34.09 2.66
2554 6775 4.195225 AGTCTCGAAGAATCCCAAAGTC 57.805 45.455 0.00 0.00 34.09 3.01
2556 6777 4.223923 AGTCTCGAAGAATCCCAAAGTCAT 59.776 41.667 0.00 0.00 34.09 3.06
2557 6778 4.331168 GTCTCGAAGAATCCCAAAGTCATG 59.669 45.833 0.00 0.00 34.09 3.07
2558 6779 4.222810 TCTCGAAGAATCCCAAAGTCATGA 59.777 41.667 0.00 0.00 34.09 3.07
2559 6780 4.905429 TCGAAGAATCCCAAAGTCATGAA 58.095 39.130 0.00 0.00 0.00 2.57
2561 6782 4.095483 CGAAGAATCCCAAAGTCATGAAGG 59.905 45.833 0.00 0.00 0.00 3.46
2563 6784 5.779241 AGAATCCCAAAGTCATGAAGGTA 57.221 39.130 0.00 0.00 0.00 3.08
2567 6788 7.775561 AGAATCCCAAAGTCATGAAGGTATTAC 59.224 37.037 0.00 0.00 0.00 1.89
2568 6789 6.381498 TCCCAAAGTCATGAAGGTATTACA 57.619 37.500 0.00 0.00 0.00 2.41
2569 6790 6.414732 TCCCAAAGTCATGAAGGTATTACAG 58.585 40.000 0.00 0.00 0.00 2.74
2573 6794 4.938080 AGTCATGAAGGTATTACAGCTCG 58.062 43.478 0.00 0.00 32.46 5.03
2574 6795 3.491267 GTCATGAAGGTATTACAGCTCGC 59.509 47.826 0.00 0.00 32.46 5.03
2575 6796 3.132111 TCATGAAGGTATTACAGCTCGCA 59.868 43.478 0.00 0.00 32.46 5.10
2576 6797 3.603158 TGAAGGTATTACAGCTCGCAA 57.397 42.857 0.00 0.00 32.46 4.85
2602 6823 7.692908 CGGAGCAAAGACAAAGAAAATAAAA 57.307 32.000 0.00 0.00 0.00 1.52
2603 6824 7.777425 CGGAGCAAAGACAAAGAAAATAAAAG 58.223 34.615 0.00 0.00 0.00 2.27
2604 6825 7.435192 CGGAGCAAAGACAAAGAAAATAAAAGT 59.565 33.333 0.00 0.00 0.00 2.66
2612 6833 9.899226 AGACAAAGAAAATAAAAGTACATGCTC 57.101 29.630 0.00 0.00 0.00 4.26
2613 6834 9.677567 GACAAAGAAAATAAAAGTACATGCTCA 57.322 29.630 0.00 0.00 0.00 4.26
2615 6836 9.897744 CAAAGAAAATAAAAGTACATGCTCAGA 57.102 29.630 0.00 0.00 0.00 3.27
2624 6845 6.743575 AAGTACATGCTCAGAAATACAACC 57.256 37.500 0.00 0.00 0.00 3.77
2625 6846 4.870426 AGTACATGCTCAGAAATACAACCG 59.130 41.667 0.00 0.00 0.00 4.44
2626 6847 3.009723 ACATGCTCAGAAATACAACCGG 58.990 45.455 0.00 0.00 0.00 5.28
2627 6848 2.851263 TGCTCAGAAATACAACCGGT 57.149 45.000 0.00 0.00 0.00 5.28
2628 6849 3.965379 TGCTCAGAAATACAACCGGTA 57.035 42.857 8.00 0.00 36.16 4.02
2629 6850 4.274602 TGCTCAGAAATACAACCGGTAA 57.725 40.909 8.00 0.00 35.14 2.85
2635 6856 4.216687 CAGAAATACAACCGGTAAGGCAAA 59.783 41.667 8.00 0.00 46.52 3.68
2636 6857 4.828387 AGAAATACAACCGGTAAGGCAAAA 59.172 37.500 8.00 0.00 46.52 2.44
2658 6879 4.825199 AAGAGGATAAGCTCCCTAGACT 57.175 45.455 2.66 0.00 46.27 3.24
2659 6880 4.382386 AGAGGATAAGCTCCCTAGACTC 57.618 50.000 2.66 0.00 46.27 3.36
2660 6881 3.075432 AGAGGATAAGCTCCCTAGACTCC 59.925 52.174 2.66 0.00 46.27 3.85
2661 6882 3.068237 AGGATAAGCTCCCTAGACTCCT 58.932 50.000 0.00 0.00 46.27 3.69
2664 6885 5.044402 AGGATAAGCTCCCTAGACTCCTATC 60.044 48.000 0.00 0.00 46.27 2.08
2665 6886 3.536075 AAGCTCCCTAGACTCCTATCC 57.464 52.381 0.00 0.00 0.00 2.59
2666 6887 2.725795 AGCTCCCTAGACTCCTATCCT 58.274 52.381 0.00 0.00 0.00 3.24
2667 6888 2.378547 AGCTCCCTAGACTCCTATCCTG 59.621 54.545 0.00 0.00 0.00 3.86
2669 6890 3.437344 GCTCCCTAGACTCCTATCCTGTT 60.437 52.174 0.00 0.00 0.00 3.16
2672 6893 5.893500 TCCCTAGACTCCTATCCTGTTATG 58.106 45.833 0.00 0.00 0.00 1.90
2673 6894 4.464597 CCCTAGACTCCTATCCTGTTATGC 59.535 50.000 0.00 0.00 0.00 3.14
2674 6895 5.080337 CCTAGACTCCTATCCTGTTATGCA 58.920 45.833 0.00 0.00 0.00 3.96
2675 6896 5.540337 CCTAGACTCCTATCCTGTTATGCAA 59.460 44.000 0.00 0.00 0.00 4.08
2677 6898 4.101741 AGACTCCTATCCTGTTATGCAACC 59.898 45.833 0.00 0.00 33.41 3.77
2679 6900 1.873591 CCTATCCTGTTATGCAACCGC 59.126 52.381 0.00 0.00 33.41 5.68
2680 6901 1.873591 CTATCCTGTTATGCAACCGCC 59.126 52.381 0.00 0.00 37.32 6.13
2681 6902 0.034574 ATCCTGTTATGCAACCGCCA 60.035 50.000 0.00 0.00 37.32 5.69
2682 6903 0.034574 TCCTGTTATGCAACCGCCAT 60.035 50.000 0.00 0.00 37.32 4.40
2683 6904 0.381801 CCTGTTATGCAACCGCCATC 59.618 55.000 0.00 0.00 37.32 3.51
2684 6905 0.381801 CTGTTATGCAACCGCCATCC 59.618 55.000 0.00 0.00 37.32 3.51
2686 6907 1.092921 GTTATGCAACCGCCATCCGA 61.093 55.000 0.00 0.00 40.02 4.55
2687 6908 0.393132 TTATGCAACCGCCATCCGAA 60.393 50.000 0.00 0.00 40.02 4.30
2689 6910 3.810896 GCAACCGCCATCCGAACC 61.811 66.667 0.00 0.00 40.02 3.62
2690 6911 3.496131 CAACCGCCATCCGAACCG 61.496 66.667 0.00 0.00 40.02 4.44
2695 6916 2.046700 GCCATCCGAACCGGTTGA 60.047 61.111 27.87 17.58 46.01 3.18
2697 6918 1.029947 GCCATCCGAACCGGTTGAAT 61.030 55.000 27.87 12.13 46.01 2.57
2698 6919 1.744456 GCCATCCGAACCGGTTGAATA 60.744 52.381 27.87 7.68 46.01 1.75
2699 6920 2.846193 CCATCCGAACCGGTTGAATAT 58.154 47.619 27.87 9.83 46.01 1.28
2700 6921 3.804411 GCCATCCGAACCGGTTGAATATA 60.804 47.826 27.87 4.15 46.01 0.86
2701 6922 3.744426 CCATCCGAACCGGTTGAATATAC 59.256 47.826 27.87 7.26 46.01 1.47
2702 6923 3.744426 CATCCGAACCGGTTGAATATACC 59.256 47.826 27.87 6.43 46.01 2.73
2703 6924 2.486918 CCGAACCGGTTGAATATACCC 58.513 52.381 27.87 5.62 42.73 3.69
2704 6925 2.486918 CGAACCGGTTGAATATACCCC 58.513 52.381 27.87 4.79 31.75 4.95
2705 6926 2.486918 GAACCGGTTGAATATACCCCG 58.513 52.381 27.87 0.00 38.39 5.73
2708 6929 1.223187 CGGTTGAATATACCCCGTGC 58.777 55.000 0.00 0.00 34.10 5.34
2709 6930 1.202604 CGGTTGAATATACCCCGTGCT 60.203 52.381 0.00 0.00 34.10 4.40
2711 6932 3.396560 GGTTGAATATACCCCGTGCTAC 58.603 50.000 0.00 0.00 0.00 3.58
2713 6934 2.680251 TGAATATACCCCGTGCTACCA 58.320 47.619 0.00 0.00 0.00 3.25
2714 6935 3.244582 TGAATATACCCCGTGCTACCAT 58.755 45.455 0.00 0.00 0.00 3.55
2715 6936 3.259876 TGAATATACCCCGTGCTACCATC 59.740 47.826 0.00 0.00 0.00 3.51
2716 6937 2.688902 TATACCCCGTGCTACCATCT 57.311 50.000 0.00 0.00 0.00 2.90
2717 6938 1.339097 ATACCCCGTGCTACCATCTC 58.661 55.000 0.00 0.00 0.00 2.75
2718 6939 0.757935 TACCCCGTGCTACCATCTCC 60.758 60.000 0.00 0.00 0.00 3.71
2719 6940 2.808206 CCCCGTGCTACCATCTCCC 61.808 68.421 0.00 0.00 0.00 4.30
2720 6941 2.063979 CCCGTGCTACCATCTCCCA 61.064 63.158 0.00 0.00 0.00 4.37
2721 6942 1.410850 CCCGTGCTACCATCTCCCAT 61.411 60.000 0.00 0.00 0.00 4.00
2722 6943 0.034059 CCGTGCTACCATCTCCCATC 59.966 60.000 0.00 0.00 0.00 3.51
2723 6944 1.043816 CGTGCTACCATCTCCCATCT 58.956 55.000 0.00 0.00 0.00 2.90
2724 6945 1.269988 CGTGCTACCATCTCCCATCTG 60.270 57.143 0.00 0.00 0.00 2.90
2726 6947 2.965831 GTGCTACCATCTCCCATCTGTA 59.034 50.000 0.00 0.00 0.00 2.74
2729 6950 3.553096 GCTACCATCTCCCATCTGTAACG 60.553 52.174 0.00 0.00 0.00 3.18
2730 6951 2.747177 ACCATCTCCCATCTGTAACGA 58.253 47.619 0.00 0.00 0.00 3.85
2731 6952 2.431057 ACCATCTCCCATCTGTAACGAC 59.569 50.000 0.00 0.00 0.00 4.34
2732 6953 2.224066 CCATCTCCCATCTGTAACGACC 60.224 54.545 0.00 0.00 0.00 4.79
2733 6954 2.225382 TCTCCCATCTGTAACGACCA 57.775 50.000 0.00 0.00 0.00 4.02
2734 6955 2.531771 TCTCCCATCTGTAACGACCAA 58.468 47.619 0.00 0.00 0.00 3.67
2735 6956 2.901192 TCTCCCATCTGTAACGACCAAA 59.099 45.455 0.00 0.00 0.00 3.28
2736 6957 3.000727 CTCCCATCTGTAACGACCAAAC 58.999 50.000 0.00 0.00 0.00 2.93
2737 6958 2.081462 CCCATCTGTAACGACCAAACC 58.919 52.381 0.00 0.00 0.00 3.27
2738 6959 2.290071 CCCATCTGTAACGACCAAACCT 60.290 50.000 0.00 0.00 0.00 3.50
2739 6960 3.408634 CCATCTGTAACGACCAAACCTT 58.591 45.455 0.00 0.00 0.00 3.50
2740 6961 3.188460 CCATCTGTAACGACCAAACCTTG 59.812 47.826 0.00 0.00 0.00 3.61
2742 6963 4.139859 TCTGTAACGACCAAACCTTGAA 57.860 40.909 0.00 0.00 0.00 2.69
2743 6964 4.124238 TCTGTAACGACCAAACCTTGAAG 58.876 43.478 0.00 0.00 0.00 3.02
2744 6965 3.207778 TGTAACGACCAAACCTTGAAGG 58.792 45.455 10.24 10.24 42.49 3.46
2745 6966 2.721425 AACGACCAAACCTTGAAGGA 57.279 45.000 19.83 0.00 37.67 3.36
2746 6967 2.951229 ACGACCAAACCTTGAAGGAT 57.049 45.000 19.83 2.35 37.67 3.24
2747 6968 3.223674 ACGACCAAACCTTGAAGGATT 57.776 42.857 19.83 9.92 37.67 3.01
2751 6972 4.320494 CGACCAAACCTTGAAGGATTTGAG 60.320 45.833 26.39 20.97 37.98 3.02
2752 6973 4.546674 ACCAAACCTTGAAGGATTTGAGT 58.453 39.130 26.39 21.36 37.98 3.41
2753 6974 4.584743 ACCAAACCTTGAAGGATTTGAGTC 59.415 41.667 26.39 0.00 37.98 3.36
2755 6976 5.048434 CCAAACCTTGAAGGATTTGAGTCTC 60.048 44.000 26.39 0.00 37.98 3.36
2756 6977 5.574970 AACCTTGAAGGATTTGAGTCTCT 57.425 39.130 19.83 0.00 37.67 3.10
2757 6978 4.904241 ACCTTGAAGGATTTGAGTCTCTG 58.096 43.478 19.83 0.00 37.67 3.35
2758 6979 4.349342 ACCTTGAAGGATTTGAGTCTCTGT 59.651 41.667 19.83 0.00 37.67 3.41
2759 6980 4.694509 CCTTGAAGGATTTGAGTCTCTGTG 59.305 45.833 4.95 0.00 37.67 3.66
2762 6983 4.202398 TGAAGGATTTGAGTCTCTGTGCTT 60.202 41.667 0.65 4.14 0.00 3.91
2764 6985 4.826556 AGGATTTGAGTCTCTGTGCTTAC 58.173 43.478 0.65 0.00 0.00 2.34
2765 6986 3.935828 GGATTTGAGTCTCTGTGCTTACC 59.064 47.826 0.65 0.00 0.00 2.85
2766 6987 2.724977 TTGAGTCTCTGTGCTTACCG 57.275 50.000 0.65 0.00 0.00 4.02
2767 6988 1.617322 TGAGTCTCTGTGCTTACCGT 58.383 50.000 0.65 0.00 0.00 4.83
2769 6990 0.038159 AGTCTCTGTGCTTACCGTGC 60.038 55.000 0.00 0.00 0.00 5.34
2770 6991 0.038159 GTCTCTGTGCTTACCGTGCT 60.038 55.000 0.00 0.00 0.00 4.40
2771 6992 1.201647 GTCTCTGTGCTTACCGTGCTA 59.798 52.381 0.00 0.00 0.00 3.49
2774 6995 1.201647 TCTGTGCTTACCGTGCTAGTC 59.798 52.381 0.00 0.00 0.00 2.59
2775 6996 0.245539 TGTGCTTACCGTGCTAGTCC 59.754 55.000 0.00 0.00 0.00 3.85
2776 6997 0.459759 GTGCTTACCGTGCTAGTCCC 60.460 60.000 0.00 0.00 0.00 4.46
2778 6999 0.179108 GCTTACCGTGCTAGTCCCTG 60.179 60.000 0.00 0.00 0.00 4.45
2780 7001 0.040058 TTACCGTGCTAGTCCCTGGA 59.960 55.000 0.00 0.00 0.00 3.86
2781 7002 0.260816 TACCGTGCTAGTCCCTGGAT 59.739 55.000 0.00 0.00 0.00 3.41
2782 7003 1.043673 ACCGTGCTAGTCCCTGGATC 61.044 60.000 0.00 0.00 0.00 3.36
2783 7004 1.360551 CGTGCTAGTCCCTGGATCG 59.639 63.158 0.00 0.00 0.00 3.69
2784 7005 1.101635 CGTGCTAGTCCCTGGATCGA 61.102 60.000 0.00 0.00 0.00 3.59
2785 7006 1.112113 GTGCTAGTCCCTGGATCGAA 58.888 55.000 0.00 0.00 0.00 3.71
2787 7008 1.342076 TGCTAGTCCCTGGATCGAACT 60.342 52.381 0.00 0.00 0.00 3.01
2789 7010 1.604755 CTAGTCCCTGGATCGAACTCG 59.395 57.143 0.00 0.00 41.45 4.18
2790 7011 1.227002 GTCCCTGGATCGAACTCGC 60.227 63.158 0.00 0.00 39.60 5.03
2792 7013 0.106868 TCCCTGGATCGAACTCGCTA 60.107 55.000 0.00 0.00 39.60 4.26
2795 7016 0.382158 CTGGATCGAACTCGCTAGCA 59.618 55.000 16.45 0.92 39.60 3.49
2796 7017 0.100682 TGGATCGAACTCGCTAGCAC 59.899 55.000 16.45 0.00 39.60 4.40
2797 7018 0.100682 GGATCGAACTCGCTAGCACA 59.899 55.000 16.45 0.00 39.60 4.57
2799 7020 0.526211 ATCGAACTCGCTAGCACACA 59.474 50.000 16.45 0.00 39.60 3.72
2800 7021 0.386858 TCGAACTCGCTAGCACACAC 60.387 55.000 16.45 1.96 39.60 3.82
2801 7022 0.663269 CGAACTCGCTAGCACACACA 60.663 55.000 16.45 0.00 0.00 3.72
2802 7023 1.497991 GAACTCGCTAGCACACACAA 58.502 50.000 16.45 0.00 0.00 3.33
2804 7025 3.250744 GAACTCGCTAGCACACACAATA 58.749 45.455 16.45 0.00 0.00 1.90
2805 7026 3.526931 ACTCGCTAGCACACACAATAT 57.473 42.857 16.45 0.00 0.00 1.28
2806 7027 4.649088 ACTCGCTAGCACACACAATATA 57.351 40.909 16.45 0.00 0.00 0.86
2807 7028 4.611943 ACTCGCTAGCACACACAATATAG 58.388 43.478 16.45 0.00 0.00 1.31
2808 7029 4.338400 ACTCGCTAGCACACACAATATAGA 59.662 41.667 16.45 0.00 0.00 1.98
2809 7030 5.010112 ACTCGCTAGCACACACAATATAGAT 59.990 40.000 16.45 0.00 0.00 1.98
2810 7031 5.222631 TCGCTAGCACACACAATATAGATG 58.777 41.667 16.45 0.00 0.00 2.90
2811 7032 5.009610 TCGCTAGCACACACAATATAGATGA 59.990 40.000 16.45 0.00 0.00 2.92
2813 7034 6.367149 CGCTAGCACACACAATATAGATGAAT 59.633 38.462 16.45 0.00 0.00 2.57
2814 7035 7.542130 CGCTAGCACACACAATATAGATGAATA 59.458 37.037 16.45 0.00 0.00 1.75
2815 7036 8.651588 GCTAGCACACACAATATAGATGAATAC 58.348 37.037 10.63 0.00 0.00 1.89
2816 7037 7.969536 AGCACACACAATATAGATGAATACC 57.030 36.000 0.00 0.00 0.00 2.73
2820 7041 9.546428 CACACACAATATAGATGAATACCAGAA 57.454 33.333 0.00 0.00 0.00 3.02
2830 7051 7.559590 AGATGAATACCAGAATAACAAGTGC 57.440 36.000 0.00 0.00 0.00 4.40
2832 7053 7.776969 AGATGAATACCAGAATAACAAGTGCAT 59.223 33.333 0.00 0.00 0.00 3.96
2833 7054 7.320443 TGAATACCAGAATAACAAGTGCATC 57.680 36.000 0.00 0.00 0.00 3.91
2835 7056 7.557358 TGAATACCAGAATAACAAGTGCATCAT 59.443 33.333 0.00 0.00 0.00 2.45
2836 7057 7.886629 ATACCAGAATAACAAGTGCATCATT 57.113 32.000 0.00 0.00 0.00 2.57
2837 7058 6.594788 ACCAGAATAACAAGTGCATCATTT 57.405 33.333 0.00 0.00 0.00 2.32
2839 7060 8.297470 ACCAGAATAACAAGTGCATCATTTAT 57.703 30.769 0.00 0.00 0.00 1.40
2840 7061 8.752187 ACCAGAATAACAAGTGCATCATTTATT 58.248 29.630 0.00 0.00 0.00 1.40
2846 7067 7.795431 AACAAGTGCATCATTTATTACAACG 57.205 32.000 0.00 0.00 0.00 4.10
2847 7068 6.908825 ACAAGTGCATCATTTATTACAACGT 58.091 32.000 0.00 0.00 0.00 3.99
2848 7069 8.035165 ACAAGTGCATCATTTATTACAACGTA 57.965 30.769 0.00 0.00 0.00 3.57
2849 7070 8.673711 ACAAGTGCATCATTTATTACAACGTAT 58.326 29.630 0.00 0.00 0.00 3.06
2850 7071 8.946935 CAAGTGCATCATTTATTACAACGTATG 58.053 33.333 0.00 0.00 0.00 2.39
2852 7073 9.056005 AGTGCATCATTTATTACAACGTATGAT 57.944 29.630 0.00 0.00 34.12 2.45
2853 7074 9.318041 GTGCATCATTTATTACAACGTATGATC 57.682 33.333 3.74 0.00 32.13 2.92
2854 7075 8.503196 TGCATCATTTATTACAACGTATGATCC 58.497 33.333 3.74 0.00 32.13 3.36
2855 7076 8.503196 GCATCATTTATTACAACGTATGATCCA 58.497 33.333 3.74 0.00 32.13 3.41
2857 7078 9.996554 ATCATTTATTACAACGTATGATCCAGA 57.003 29.630 0.00 0.00 29.31 3.86
2858 7079 9.476202 TCATTTATTACAACGTATGATCCAGAG 57.524 33.333 0.00 0.00 0.00 3.35
2859 7080 9.261180 CATTTATTACAACGTATGATCCAGAGT 57.739 33.333 0.00 0.00 0.00 3.24
2890 8103 8.470040 AAATAAAACAATCTGCATAGCACTTG 57.530 30.769 0.00 7.58 34.39 3.16
2891 8104 4.445452 AAACAATCTGCATAGCACTTGG 57.555 40.909 11.76 0.00 33.27 3.61
2892 8105 1.747355 ACAATCTGCATAGCACTTGGC 59.253 47.619 11.76 0.00 45.30 4.52
2905 8118 4.701956 GCACTTGGCTAGCTTTATTCAA 57.298 40.909 15.72 8.10 40.25 2.69
2909 8122 6.625740 GCACTTGGCTAGCTTTATTCAATCAA 60.626 38.462 15.72 5.20 40.25 2.57
2910 8123 7.315142 CACTTGGCTAGCTTTATTCAATCAAA 58.685 34.615 15.72 0.00 0.00 2.69
2911 8124 7.274250 CACTTGGCTAGCTTTATTCAATCAAAC 59.726 37.037 15.72 0.00 0.00 2.93
2912 8125 6.832520 TGGCTAGCTTTATTCAATCAAACA 57.167 33.333 15.72 0.00 0.00 2.83
2913 8126 6.855836 TGGCTAGCTTTATTCAATCAAACAG 58.144 36.000 15.72 0.00 0.00 3.16
2914 8127 6.127647 TGGCTAGCTTTATTCAATCAAACAGG 60.128 38.462 15.72 0.00 0.00 4.00
2916 8129 5.665916 AGCTTTATTCAATCAAACAGGGG 57.334 39.130 0.00 0.00 0.00 4.79
2919 8132 6.269769 AGCTTTATTCAATCAAACAGGGGAAA 59.730 34.615 0.00 0.00 0.00 3.13
2920 8133 6.934083 GCTTTATTCAATCAAACAGGGGAAAA 59.066 34.615 0.00 0.00 0.00 2.29
2922 8135 7.610580 TTATTCAATCAAACAGGGGAAAAGT 57.389 32.000 0.00 0.00 0.00 2.66
2924 8137 6.399639 TTCAATCAAACAGGGGAAAAGTAC 57.600 37.500 0.00 0.00 0.00 2.73
2925 8138 4.830600 TCAATCAAACAGGGGAAAAGTACC 59.169 41.667 0.00 0.00 0.00 3.34
2927 8140 3.827722 TCAAACAGGGGAAAAGTACCAG 58.172 45.455 0.00 0.00 0.00 4.00
2929 8142 4.079672 TCAAACAGGGGAAAAGTACCAGAA 60.080 41.667 0.00 0.00 0.00 3.02
2930 8143 4.529716 AACAGGGGAAAAGTACCAGAAA 57.470 40.909 0.00 0.00 0.00 2.52
2932 8145 5.074746 ACAGGGGAAAAGTACCAGAAAAT 57.925 39.130 0.00 0.00 0.00 1.82
2933 8146 6.208840 ACAGGGGAAAAGTACCAGAAAATA 57.791 37.500 0.00 0.00 0.00 1.40
2934 8147 6.616577 ACAGGGGAAAAGTACCAGAAAATAA 58.383 36.000 0.00 0.00 0.00 1.40
2946 9192 4.019681 ACCAGAAAATAACGATGAGTCCCA 60.020 41.667 0.00 0.00 0.00 4.37
2948 9194 5.237344 CCAGAAAATAACGATGAGTCCCATC 59.763 44.000 0.00 0.00 46.36 3.51
2956 9202 2.123018 ATGAGTCCCATCATAGCCCA 57.877 50.000 0.00 0.00 38.15 5.36
2957 9203 1.131638 TGAGTCCCATCATAGCCCAC 58.868 55.000 0.00 0.00 0.00 4.61
2958 9204 1.344393 TGAGTCCCATCATAGCCCACT 60.344 52.381 0.00 0.00 0.00 4.00
2960 9206 0.109342 GTCCCATCATAGCCCACTGG 59.891 60.000 0.00 0.00 0.00 4.00
2970 9216 2.513204 CCCACTGGCGATGCTGAG 60.513 66.667 0.00 0.00 0.00 3.35
2971 9217 2.267006 CCACTGGCGATGCTGAGT 59.733 61.111 0.00 0.00 0.00 3.41
2972 9218 2.104859 CCACTGGCGATGCTGAGTG 61.105 63.158 11.90 11.90 38.10 3.51
2985 9231 2.505118 GAGTGCAGACTCGCGACC 60.505 66.667 3.71 0.00 39.44 4.79
2986 9232 3.973267 GAGTGCAGACTCGCGACCC 62.973 68.421 3.71 0.00 39.44 4.46
2988 9234 2.360726 TGCAGACTCGCGACCCTA 60.361 61.111 3.71 0.00 33.35 3.53
2989 9235 1.974875 TGCAGACTCGCGACCCTAA 60.975 57.895 3.71 0.00 33.35 2.69
2990 9236 1.516603 GCAGACTCGCGACCCTAAC 60.517 63.158 3.71 0.00 0.00 2.34
2991 9237 1.226323 CAGACTCGCGACCCTAACG 60.226 63.158 3.71 0.00 0.00 3.18
3003 9249 3.746792 ACCCTAACGGTACCTTACTCT 57.253 47.619 10.90 0.00 45.97 3.24
3004 9250 4.053009 ACCCTAACGGTACCTTACTCTT 57.947 45.455 10.90 0.00 45.97 2.85
3005 9251 4.019858 ACCCTAACGGTACCTTACTCTTC 58.980 47.826 10.90 0.00 45.97 2.87
3006 9252 3.065925 CCCTAACGGTACCTTACTCTTCG 59.934 52.174 10.90 0.00 0.00 3.79
3007 9253 3.691609 CCTAACGGTACCTTACTCTTCGT 59.308 47.826 10.90 0.00 0.00 3.85
3008 9254 3.839051 AACGGTACCTTACTCTTCGTC 57.161 47.619 10.90 0.00 0.00 4.20
3009 9255 3.064900 ACGGTACCTTACTCTTCGTCT 57.935 47.619 10.90 0.00 0.00 4.18
3011 9257 3.005554 CGGTACCTTACTCTTCGTCTGA 58.994 50.000 10.90 0.00 0.00 3.27
3012 9258 3.438087 CGGTACCTTACTCTTCGTCTGAA 59.562 47.826 10.90 0.00 0.00 3.02
3013 9259 4.096081 CGGTACCTTACTCTTCGTCTGAAT 59.904 45.833 10.90 0.00 32.61 2.57
3014 9260 5.295292 CGGTACCTTACTCTTCGTCTGAATA 59.705 44.000 10.90 0.00 32.61 1.75
3026 11277 4.122046 TCGTCTGAATATCCTGCAACATG 58.878 43.478 0.00 0.00 0.00 3.21
3027 11278 4.122046 CGTCTGAATATCCTGCAACATGA 58.878 43.478 0.00 0.00 0.00 3.07
3028 11279 4.210746 CGTCTGAATATCCTGCAACATGAG 59.789 45.833 0.00 0.00 0.00 2.90
3029 11280 5.363101 GTCTGAATATCCTGCAACATGAGA 58.637 41.667 0.00 0.00 0.00 3.27
3031 11282 4.122046 TGAATATCCTGCAACATGAGACG 58.878 43.478 0.00 0.00 0.00 4.18
3032 11283 3.827008 ATATCCTGCAACATGAGACGT 57.173 42.857 0.00 0.00 0.00 4.34
3033 11284 2.479566 ATCCTGCAACATGAGACGTT 57.520 45.000 0.00 0.00 0.00 3.99
3034 11285 1.511850 TCCTGCAACATGAGACGTTG 58.488 50.000 0.00 0.00 45.25 4.10
3040 11291 0.534877 AACATGAGACGTTGCAGCCA 60.535 50.000 0.00 0.00 0.00 4.75
3041 11292 0.321919 ACATGAGACGTTGCAGCCAT 60.322 50.000 0.00 0.00 0.00 4.40
3043 11294 2.216046 CATGAGACGTTGCAGCCATAT 58.784 47.619 0.00 0.00 0.00 1.78
3044 11295 3.181466 ACATGAGACGTTGCAGCCATATA 60.181 43.478 0.00 0.00 0.00 0.86
3046 11297 2.224042 TGAGACGTTGCAGCCATATAGG 60.224 50.000 0.00 0.00 41.84 2.57
3047 11298 1.762957 AGACGTTGCAGCCATATAGGT 59.237 47.619 0.00 0.00 40.61 3.08
3048 11299 2.135933 GACGTTGCAGCCATATAGGTC 58.864 52.381 0.00 0.00 40.61 3.85
3049 11300 1.484653 ACGTTGCAGCCATATAGGTCA 59.515 47.619 0.00 0.00 40.61 4.02
3050 11301 2.093181 ACGTTGCAGCCATATAGGTCAA 60.093 45.455 0.00 0.00 40.61 3.18
3052 11303 4.202315 ACGTTGCAGCCATATAGGTCAATA 60.202 41.667 0.00 0.00 40.61 1.90
3053 11304 4.937620 CGTTGCAGCCATATAGGTCAATAT 59.062 41.667 0.00 0.00 40.61 1.28
3054 11305 5.412594 CGTTGCAGCCATATAGGTCAATATT 59.587 40.000 0.00 0.00 40.61 1.28
3055 11306 6.072508 CGTTGCAGCCATATAGGTCAATATTT 60.073 38.462 0.00 0.00 40.61 1.40
3056 11307 7.522073 CGTTGCAGCCATATAGGTCAATATTTT 60.522 37.037 0.00 0.00 40.61 1.82
3058 11309 7.003482 TGCAGCCATATAGGTCAATATTTTGA 58.997 34.615 0.00 0.00 40.61 2.69
3059 11310 7.505248 TGCAGCCATATAGGTCAATATTTTGAA 59.495 33.333 0.00 0.00 43.29 2.69
3060 11311 8.526147 GCAGCCATATAGGTCAATATTTTGAAT 58.474 33.333 0.00 0.00 43.29 2.57
3061 11312 9.850628 CAGCCATATAGGTCAATATTTTGAATG 57.149 33.333 0.00 1.31 43.29 2.67
3062 11313 9.592196 AGCCATATAGGTCAATATTTTGAATGT 57.408 29.630 0.00 0.00 43.29 2.71
3069 11320 8.076910 AGGTCAATATTTTGAATGTATTGGCA 57.923 30.769 13.14 0.00 43.29 4.92
3070 11321 8.538701 AGGTCAATATTTTGAATGTATTGGCAA 58.461 29.630 0.68 0.68 43.29 4.52
3071 11322 8.819974 GGTCAATATTTTGAATGTATTGGCAAG 58.180 33.333 5.96 0.00 43.29 4.01
3073 11324 9.941325 TCAATATTTTGAATGTATTGGCAAGTT 57.059 25.926 5.96 0.00 38.90 2.66
3077 11328 7.938563 TTTTGAATGTATTGGCAAGTTACAC 57.061 32.000 14.13 5.57 0.00 2.90
3078 11329 6.641169 TTGAATGTATTGGCAAGTTACACA 57.359 33.333 14.13 9.11 0.00 3.72
3079 11330 6.252967 TGAATGTATTGGCAAGTTACACAG 57.747 37.500 14.13 0.00 0.00 3.66
3080 11331 5.182950 TGAATGTATTGGCAAGTTACACAGG 59.817 40.000 14.13 0.00 0.00 4.00
3082 11333 4.323417 TGTATTGGCAAGTTACACAGGAG 58.677 43.478 5.96 0.00 0.00 3.69
3083 11334 3.508845 ATTGGCAAGTTACACAGGAGT 57.491 42.857 5.96 0.00 0.00 3.85
3084 11335 4.634012 ATTGGCAAGTTACACAGGAGTA 57.366 40.909 5.96 0.00 0.00 2.59
3085 11336 4.425180 TTGGCAAGTTACACAGGAGTAA 57.575 40.909 0.00 0.00 0.00 2.24
3086 11337 4.634012 TGGCAAGTTACACAGGAGTAAT 57.366 40.909 0.00 0.00 36.47 1.89
3087 11338 5.748670 TGGCAAGTTACACAGGAGTAATA 57.251 39.130 0.00 0.00 36.47 0.98
3088 11339 6.116711 TGGCAAGTTACACAGGAGTAATAA 57.883 37.500 0.00 0.00 36.47 1.40
3089 11340 6.717289 TGGCAAGTTACACAGGAGTAATAAT 58.283 36.000 0.00 0.00 36.47 1.28
3090 11341 7.853299 TGGCAAGTTACACAGGAGTAATAATA 58.147 34.615 0.00 0.00 36.47 0.98
3091 11342 8.491134 TGGCAAGTTACACAGGAGTAATAATAT 58.509 33.333 0.00 0.00 36.47 1.28
3092 11343 9.991906 GGCAAGTTACACAGGAGTAATAATATA 57.008 33.333 0.00 0.00 36.47 0.86
3102 11353 9.245481 ACAGGAGTAATAATATAGCAGACCTAC 57.755 37.037 0.00 0.00 0.00 3.18
3103 11354 9.244292 CAGGAGTAATAATATAGCAGACCTACA 57.756 37.037 0.00 0.00 0.00 2.74
3104 11355 9.998752 AGGAGTAATAATATAGCAGACCTACAT 57.001 33.333 0.00 0.00 0.00 2.29
3117 11368 8.774546 AGCAGACCTACATATATATGCATAGT 57.225 34.615 20.46 13.38 37.19 2.12
3133 11384 6.693315 TGCATAGTATAACAAAAGGAAGGC 57.307 37.500 0.00 0.00 0.00 4.35
3136 11387 7.148086 TGCATAGTATAACAAAAGGAAGGCTTG 60.148 37.037 3.46 0.00 0.00 4.01
3137 11388 7.067008 GCATAGTATAACAAAAGGAAGGCTTGA 59.933 37.037 3.46 0.00 0.00 3.02
3138 11389 8.616076 CATAGTATAACAAAAGGAAGGCTTGAG 58.384 37.037 3.46 0.00 0.00 3.02
3139 11390 5.946377 AGTATAACAAAAGGAAGGCTTGAGG 59.054 40.000 3.46 0.00 0.00 3.86
3140 11391 2.001076 ACAAAAGGAAGGCTTGAGGG 57.999 50.000 3.46 0.00 0.00 4.30
3142 11393 2.319844 CAAAAGGAAGGCTTGAGGGTT 58.680 47.619 3.46 0.00 0.00 4.11
3143 11394 2.700371 CAAAAGGAAGGCTTGAGGGTTT 59.300 45.455 3.46 0.00 0.00 3.27
3144 11395 3.895041 CAAAAGGAAGGCTTGAGGGTTTA 59.105 43.478 3.46 0.00 0.00 2.01
3145 11396 2.881111 AGGAAGGCTTGAGGGTTTAC 57.119 50.000 3.46 0.00 0.00 2.01
3146 11397 2.349445 AGGAAGGCTTGAGGGTTTACT 58.651 47.619 3.46 0.00 0.00 2.24
3147 11398 2.716969 AGGAAGGCTTGAGGGTTTACTT 59.283 45.455 3.46 0.00 0.00 2.24
3148 11399 3.140332 AGGAAGGCTTGAGGGTTTACTTT 59.860 43.478 3.46 0.00 0.00 2.66
3149 11400 3.895656 GGAAGGCTTGAGGGTTTACTTTT 59.104 43.478 3.46 0.00 0.00 2.27
3150 11401 4.262036 GGAAGGCTTGAGGGTTTACTTTTG 60.262 45.833 3.46 0.00 0.00 2.44
3151 11402 2.628178 AGGCTTGAGGGTTTACTTTTGC 59.372 45.455 0.00 0.00 0.00 3.68
3153 11404 3.552890 GGCTTGAGGGTTTACTTTTGCAG 60.553 47.826 0.00 0.00 0.00 4.41
3154 11405 3.317993 GCTTGAGGGTTTACTTTTGCAGA 59.682 43.478 0.00 0.00 0.00 4.26
3155 11406 4.202111 GCTTGAGGGTTTACTTTTGCAGAA 60.202 41.667 0.00 0.00 0.00 3.02
3156 11407 5.681179 GCTTGAGGGTTTACTTTTGCAGAAA 60.681 40.000 0.00 0.00 0.00 2.52
3157 11408 5.514274 TGAGGGTTTACTTTTGCAGAAAG 57.486 39.130 15.42 15.42 0.00 2.62
3158 11409 4.202111 TGAGGGTTTACTTTTGCAGAAAGC 60.202 41.667 16.38 9.60 45.96 3.51
3160 11411 4.051237 GGGTTTACTTTTGCAGAAAGCTG 58.949 43.478 16.38 0.00 45.94 4.24
3161 11412 4.202111 GGGTTTACTTTTGCAGAAAGCTGA 60.202 41.667 16.38 5.01 45.17 4.26
3162 11413 5.509670 GGGTTTACTTTTGCAGAAAGCTGAT 60.510 40.000 16.38 5.11 45.17 2.90
3165 11416 7.011389 GGTTTACTTTTGCAGAAAGCTGATTTT 59.989 33.333 16.38 3.86 45.17 1.82
3166 11417 9.030301 GTTTACTTTTGCAGAAAGCTGATTTTA 57.970 29.630 16.38 3.17 45.17 1.52
3167 11418 9.762933 TTTACTTTTGCAGAAAGCTGATTTTAT 57.237 25.926 16.38 2.85 45.17 1.40
3168 11419 7.880059 ACTTTTGCAGAAAGCTGATTTTATC 57.120 32.000 16.38 0.00 45.17 1.75
3169 11420 6.870439 ACTTTTGCAGAAAGCTGATTTTATCC 59.130 34.615 16.38 0.00 45.17 2.59
3170 11421 6.594788 TTTGCAGAAAGCTGATTTTATCCT 57.405 33.333 0.00 0.00 45.17 3.24
3171 11422 7.701539 TTTGCAGAAAGCTGATTTTATCCTA 57.298 32.000 0.00 0.00 45.17 2.94
3172 11423 7.701539 TTGCAGAAAGCTGATTTTATCCTAA 57.298 32.000 0.00 0.00 45.17 2.69
3174 11425 8.978874 TGCAGAAAGCTGATTTTATCCTAATA 57.021 30.769 0.00 0.00 45.17 0.98
3175 11426 9.407380 TGCAGAAAGCTGATTTTATCCTAATAA 57.593 29.630 0.00 0.00 45.17 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.344129 GGCGCATAGTAGGAGGCC 59.656 66.667 10.83 0.00 0.00 5.19
58 65 2.357034 TTCAGCTTCACGCCGGAC 60.357 61.111 5.05 0.00 40.39 4.79
138 148 2.011617 AAAGGCTGGTGGAGTTGGCT 62.012 55.000 0.00 0.00 36.89 4.75
162 4268 0.540133 TGCAACTGATGTGTGCCCAT 60.540 50.000 0.00 0.00 0.00 4.00
166 4272 1.661178 CGAGTTGCAACTGATGTGTGC 60.661 52.381 35.67 17.37 39.88 4.57
176 4282 4.043200 GCCCAGCCGAGTTGCAAC 62.043 66.667 22.17 22.17 0.00 4.17
202 4308 9.475170 CAGAATGACTATGGTAAGGTTGAGCCT 62.475 44.444 0.00 0.00 46.27 4.58
222 4328 0.439985 CGAGTGTGCCGTTCAGAATG 59.560 55.000 0.00 0.00 37.54 2.67
224 4330 0.317160 ATCGAGTGTGCCGTTCAGAA 59.683 50.000 0.00 0.00 0.00 3.02
249 4355 2.806945 AGGGAAATGCCGAGAAATCA 57.193 45.000 0.00 0.00 37.63 2.57
252 4358 3.278574 CATGTAGGGAAATGCCGAGAAA 58.721 45.455 0.00 0.00 37.63 2.52
261 4367 6.240118 GGATGAGATCTTCCATGTAGGGAAAT 60.240 42.308 8.36 0.00 45.87 2.17
268 4374 4.590647 GGACAGGATGAGATCTTCCATGTA 59.409 45.833 14.59 0.00 41.25 2.29
319 4425 1.097547 GTCATGTTGCCGATCCCTGG 61.098 60.000 0.00 0.00 0.00 4.45
327 4433 0.592637 TCAAGCTTGTCATGTTGCCG 59.407 50.000 25.19 0.00 0.00 5.69
334 4440 3.087031 CCAACTGGATCAAGCTTGTCAT 58.913 45.455 25.19 13.08 37.39 3.06
365 4471 0.331278 ACCCCTCAAATGCGGATTGA 59.669 50.000 1.80 2.47 35.60 2.57
411 4517 5.940192 TTTCTAGTACAACAAGGTGCATG 57.060 39.130 0.00 0.00 0.00 4.06
429 4535 2.893489 GAGCCCCAAAACTGACATTTCT 59.107 45.455 0.00 0.00 0.00 2.52
475 4581 3.646162 TCCTCCAAGCTTGTCAAGTTAGA 59.354 43.478 24.35 11.01 0.00 2.10
630 4742 2.957402 AATCCAACTCCTGCAGTTCA 57.043 45.000 13.81 0.00 44.14 3.18
642 4754 8.141268 TCCAAATAGTTCACTGAAAAATCCAAC 58.859 33.333 0.00 0.00 0.00 3.77
643 4755 8.243961 TCCAAATAGTTCACTGAAAAATCCAA 57.756 30.769 0.00 0.00 0.00 3.53
648 4760 6.462347 GCCCTTCCAAATAGTTCACTGAAAAA 60.462 38.462 0.00 0.00 0.00 1.94
656 4768 1.953311 GCGGCCCTTCCAAATAGTTCA 60.953 52.381 0.00 0.00 34.01 3.18
657 4769 0.738975 GCGGCCCTTCCAAATAGTTC 59.261 55.000 0.00 0.00 34.01 3.01
674 4786 0.592148 GGAGATCGTACCTGGTAGCG 59.408 60.000 6.84 13.51 0.00 4.26
687 4799 6.264067 CCTGGAGTTTTATCAAATGGGAGATC 59.736 42.308 0.00 0.00 0.00 2.75
693 4805 6.358974 AAACCCTGGAGTTTTATCAAATGG 57.641 37.500 0.00 0.00 36.57 3.16
713 4825 5.488645 TTGGTTTTCCGACAGAAGTAAAC 57.511 39.130 0.00 0.00 44.36 2.01
726 4838 1.241990 GGCCTCCGAGTTGGTTTTCC 61.242 60.000 0.00 0.00 39.52 3.13
796 4914 1.338200 CCCCGAGAAGTTGTTCCTCTG 60.338 57.143 0.00 0.00 32.48 3.35
798 4916 0.036294 CCCCCGAGAAGTTGTTCCTC 60.036 60.000 0.00 0.00 32.48 3.71
852 4976 0.596577 GACCAGCACTGACAGTACGA 59.403 55.000 8.02 0.00 0.00 3.43
870 4994 6.207810 GGTTAATGCCGGTAAATCCATTATGA 59.792 38.462 1.90 0.00 32.21 2.15
892 5016 3.447229 CAGTTTTGAAAGGTCTGGTGGTT 59.553 43.478 0.00 0.00 0.00 3.67
927 5051 5.826601 TGTTTGCTGTGAAGTCAACATAA 57.173 34.783 0.00 0.00 0.00 1.90
971 5095 1.815003 GAGGATGCTCACCAAAACAGG 59.185 52.381 9.69 0.00 0.00 4.00
1008 5144 2.890945 GCCATACAACTGGTTTTGACCT 59.109 45.455 0.00 0.00 38.63 3.85
1036 5172 0.615331 TCCTTGCCCTGATCAGTCAC 59.385 55.000 21.11 10.43 0.00 3.67
1165 5301 3.820467 CCACTGAAATAGTTGCTGGACAA 59.180 43.478 0.00 0.00 37.60 3.18
1178 5314 5.072741 AGAATGCAACTACACCACTGAAAT 58.927 37.500 0.00 0.00 0.00 2.17
1195 5331 1.134699 TCCACATGTCCTCGAGAATGC 60.135 52.381 15.71 1.27 0.00 3.56
1219 5355 7.029053 TGGCTAGGTGTAGATAGCTAAGATA 57.971 40.000 0.00 0.00 43.21 1.98
1291 5427 4.826733 TCCAAGATCTAGAGTGATCAGCTC 59.173 45.833 14.04 14.04 43.76 4.09
1428 5565 0.733909 GCTGGAGTTGGCGAAATTGC 60.734 55.000 0.00 0.00 0.00 3.56
1611 5754 5.989477 GCTATACCTGCCATCACCATAATA 58.011 41.667 0.00 0.00 0.00 0.98
1632 5775 1.205417 CCAGAAAAATCAATGCCGGCT 59.795 47.619 29.70 10.60 0.00 5.52
1641 5784 5.126869 TGACAAAGAGTTGCCAGAAAAATCA 59.873 36.000 0.00 0.00 38.39 2.57
1647 5790 2.945008 CTGTGACAAAGAGTTGCCAGAA 59.055 45.455 0.00 0.00 38.39 3.02
1723 5866 6.201806 GGAATAAGACCTGACAGATGATTTCG 59.798 42.308 3.32 0.00 0.00 3.46
1752 5895 2.492881 CAGTACAAGATTGCCAATGCCA 59.507 45.455 0.00 0.00 36.33 4.92
1754 5897 2.493278 ACCAGTACAAGATTGCCAATGC 59.507 45.455 0.00 0.00 38.26 3.56
1767 5910 2.304761 GTCCAAGGATTCCACCAGTACA 59.695 50.000 5.29 0.00 0.00 2.90
1774 5917 2.084546 CGAAAGGTCCAAGGATTCCAC 58.915 52.381 5.29 0.00 0.00 4.02
1794 5937 2.125350 CCCGAGAGCTGGTTCTGC 60.125 66.667 0.00 0.00 0.00 4.26
1796 5939 0.251832 TTCTCCCGAGAGCTGGTTCT 60.252 55.000 0.00 0.00 40.22 3.01
1803 5946 1.202592 GGAGGAATTTCTCCCGAGAGC 60.203 57.143 20.99 0.00 46.81 4.09
1843 5986 0.398318 AGGTTCAGAACACTCAGGGC 59.602 55.000 15.36 0.00 0.00 5.19
1846 5989 4.054671 GTTGAGAGGTTCAGAACACTCAG 58.945 47.826 26.52 0.00 42.48 3.35
1937 6080 1.133915 CACATAGCCCCGGGTTATTGT 60.134 52.381 21.85 14.75 26.55 2.71
1944 6087 1.073199 GAATCCACATAGCCCCGGG 59.927 63.158 15.80 15.80 0.00 5.73
1947 6090 1.073199 CGGGAATCCACATAGCCCC 59.927 63.158 0.09 0.00 35.30 5.80
1995 6138 3.432046 CCATGCTTGTTTCAGTTTGGGTT 60.432 43.478 0.00 0.00 0.00 4.11
1998 6141 3.731652 TCCATGCTTGTTTCAGTTTGG 57.268 42.857 0.00 0.00 0.00 3.28
2014 6157 4.283978 CAGTGCCTCTCTATCTTCATCCAT 59.716 45.833 0.00 0.00 0.00 3.41
2256 6413 4.145052 ACACAGATGCTCGATATAGGACA 58.855 43.478 0.00 0.00 0.00 4.02
2273 6433 7.703058 ACAAAGGAAGGGAAATATTACACAG 57.297 36.000 0.00 0.00 0.00 3.66
2316 6492 9.073475 ACATCAAATTACTGGCAAGTACTTTTA 57.927 29.630 12.62 7.04 38.82 1.52
2317 6493 7.951591 ACATCAAATTACTGGCAAGTACTTTT 58.048 30.769 12.62 7.88 38.82 2.27
2318 6494 7.524717 ACATCAAATTACTGGCAAGTACTTT 57.475 32.000 10.09 10.09 40.48 2.66
2319 6495 7.524717 AACATCAAATTACTGGCAAGTACTT 57.475 32.000 0.00 1.12 38.65 2.24
2320 6496 8.807948 ATAACATCAAATTACTGGCAAGTACT 57.192 30.769 0.00 0.00 38.65 2.73
2321 6497 9.503427 GAATAACATCAAATTACTGGCAAGTAC 57.497 33.333 0.00 0.00 38.65 2.73
2322 6498 9.237187 TGAATAACATCAAATTACTGGCAAGTA 57.763 29.630 0.00 0.00 37.88 2.24
2323 6499 8.121305 TGAATAACATCAAATTACTGGCAAGT 57.879 30.769 0.00 0.00 40.67 3.16
2324 6500 8.984891 TTGAATAACATCAAATTACTGGCAAG 57.015 30.769 0.00 0.00 36.42 4.01
2325 6501 8.584157 ACTTGAATAACATCAAATTACTGGCAA 58.416 29.630 0.00 0.00 38.75 4.52
2326 6502 8.121305 ACTTGAATAACATCAAATTACTGGCA 57.879 30.769 0.00 0.00 38.75 4.92
2327 6503 8.986477 AACTTGAATAACATCAAATTACTGGC 57.014 30.769 0.00 0.00 38.75 4.85
2468 6689 1.531739 GGCACGCCTCCATTTCCAAA 61.532 55.000 0.00 0.00 0.00 3.28
2471 6692 3.140814 GGGCACGCCTCCATTTCC 61.141 66.667 8.20 0.00 36.10 3.13
2472 6693 3.140814 GGGGCACGCCTCCATTTC 61.141 66.667 8.20 0.00 36.10 2.17
2487 6708 2.055689 TTATGATGCAGAGGCCGGGG 62.056 60.000 2.18 0.00 40.13 5.73
2488 6709 0.037303 ATTATGATGCAGAGGCCGGG 59.963 55.000 2.18 0.00 40.13 5.73
2490 6711 2.174363 TCATTATGATGCAGAGGCCG 57.826 50.000 0.00 0.00 40.13 6.13
2500 6721 3.161866 TGGCTGCATGCATCATTATGAT 58.838 40.909 22.97 1.25 45.15 2.45
2501 6722 2.588620 TGGCTGCATGCATCATTATGA 58.411 42.857 22.97 0.00 45.15 2.15
2502 6723 3.592898 ATGGCTGCATGCATCATTATG 57.407 42.857 22.97 8.76 45.15 1.90
2503 6724 4.617253 AAATGGCTGCATGCATCATTAT 57.383 36.364 31.60 23.43 45.15 1.28
2504 6725 4.409718 AAAATGGCTGCATGCATCATTA 57.590 36.364 31.60 17.40 45.15 1.90
2505 6726 3.275617 AAAATGGCTGCATGCATCATT 57.724 38.095 28.67 28.67 45.15 2.57
2506 6727 4.617253 ATAAAATGGCTGCATGCATCAT 57.383 36.364 22.97 22.96 45.15 2.45
2507 6728 4.409718 AATAAAATGGCTGCATGCATCA 57.590 36.364 22.97 21.78 45.15 3.07
2508 6729 6.847956 TTTAATAAAATGGCTGCATGCATC 57.152 33.333 22.97 17.75 45.15 3.91
2509 6730 7.337436 ACTTTTTAATAAAATGGCTGCATGCAT 59.663 29.630 22.97 6.91 36.68 3.96
2510 6731 6.654161 ACTTTTTAATAAAATGGCTGCATGCA 59.346 30.769 21.29 21.29 36.68 3.96
2511 6732 7.064966 AGACTTTTTAATAAAATGGCTGCATGC 59.935 33.333 16.04 11.82 40.97 4.06
2512 6733 8.483307 AGACTTTTTAATAAAATGGCTGCATG 57.517 30.769 16.04 0.00 40.97 4.06
2513 6734 7.489113 CGAGACTTTTTAATAAAATGGCTGCAT 59.511 33.333 20.13 1.59 42.12 3.96
2526 6747 7.996098 TTGGGATTCTTCGAGACTTTTTAAT 57.004 32.000 0.00 0.00 0.00 1.40
2528 6749 6.996282 ACTTTGGGATTCTTCGAGACTTTTTA 59.004 34.615 0.00 0.00 0.00 1.52
2531 6752 4.974399 ACTTTGGGATTCTTCGAGACTTT 58.026 39.130 0.00 0.00 0.00 2.66
2532 6753 4.040461 TGACTTTGGGATTCTTCGAGACTT 59.960 41.667 0.00 0.00 0.00 3.01
2533 6754 3.578716 TGACTTTGGGATTCTTCGAGACT 59.421 43.478 0.00 0.00 0.00 3.24
2534 6755 3.926616 TGACTTTGGGATTCTTCGAGAC 58.073 45.455 0.00 0.00 0.00 3.36
2536 6757 4.507710 TCATGACTTTGGGATTCTTCGAG 58.492 43.478 0.00 0.00 0.00 4.04
2537 6758 4.551702 TCATGACTTTGGGATTCTTCGA 57.448 40.909 0.00 0.00 0.00 3.71
2538 6759 4.095483 CCTTCATGACTTTGGGATTCTTCG 59.905 45.833 0.00 0.00 0.00 3.79
2539 6760 5.012893 ACCTTCATGACTTTGGGATTCTTC 58.987 41.667 0.00 0.00 0.00 2.87
2542 6763 7.556275 TGTAATACCTTCATGACTTTGGGATTC 59.444 37.037 13.70 8.82 33.74 2.52
2543 6764 7.410174 TGTAATACCTTCATGACTTTGGGATT 58.590 34.615 14.37 14.37 35.67 3.01
2546 6767 5.066505 GCTGTAATACCTTCATGACTTTGGG 59.933 44.000 0.00 0.00 0.00 4.12
2547 6768 5.882557 AGCTGTAATACCTTCATGACTTTGG 59.117 40.000 0.00 0.00 0.00 3.28
2548 6769 6.237942 CGAGCTGTAATACCTTCATGACTTTG 60.238 42.308 0.00 0.00 0.00 2.77
2551 6772 4.737946 GCGAGCTGTAATACCTTCATGACT 60.738 45.833 0.00 0.00 0.00 3.41
2553 6774 3.132111 TGCGAGCTGTAATACCTTCATGA 59.868 43.478 0.00 0.00 0.00 3.07
2554 6775 3.457234 TGCGAGCTGTAATACCTTCATG 58.543 45.455 0.00 0.00 0.00 3.07
2556 6777 3.521560 CTTGCGAGCTGTAATACCTTCA 58.478 45.455 0.00 0.00 0.00 3.02
2557 6778 2.285488 GCTTGCGAGCTGTAATACCTTC 59.715 50.000 19.25 0.00 45.65 3.46
2558 6779 2.280628 GCTTGCGAGCTGTAATACCTT 58.719 47.619 19.25 0.00 45.65 3.50
2559 6780 1.802880 CGCTTGCGAGCTGTAATACCT 60.803 52.381 23.42 0.00 46.96 3.08
2561 6782 0.577269 CCGCTTGCGAGCTGTAATAC 59.423 55.000 23.42 0.00 46.96 1.89
2563 6784 0.807667 CTCCGCTTGCGAGCTGTAAT 60.808 55.000 23.42 0.00 46.96 1.89
2573 6794 0.030638 TTTGTCTTTGCTCCGCTTGC 59.969 50.000 0.00 0.00 0.00 4.01
2574 6795 1.603802 TCTTTGTCTTTGCTCCGCTTG 59.396 47.619 0.00 0.00 0.00 4.01
2575 6796 1.967319 TCTTTGTCTTTGCTCCGCTT 58.033 45.000 0.00 0.00 0.00 4.68
2576 6797 1.967319 TTCTTTGTCTTTGCTCCGCT 58.033 45.000 0.00 0.00 0.00 5.52
2578 6799 7.435192 ACTTTTATTTTCTTTGTCTTTGCTCCG 59.565 33.333 0.00 0.00 0.00 4.63
2579 6800 8.648557 ACTTTTATTTTCTTTGTCTTTGCTCC 57.351 30.769 0.00 0.00 0.00 4.70
2587 6808 9.677567 TGAGCATGTACTTTTATTTTCTTTGTC 57.322 29.630 0.00 0.00 0.00 3.18
2588 6809 9.683069 CTGAGCATGTACTTTTATTTTCTTTGT 57.317 29.630 0.00 0.00 0.00 2.83
2589 6810 9.897744 TCTGAGCATGTACTTTTATTTTCTTTG 57.102 29.630 0.00 0.00 0.00 2.77
2600 6821 6.128282 CGGTTGTATTTCTGAGCATGTACTTT 60.128 38.462 0.00 0.00 0.00 2.66
2601 6822 5.351465 CGGTTGTATTTCTGAGCATGTACTT 59.649 40.000 0.00 0.00 0.00 2.24
2602 6823 4.870426 CGGTTGTATTTCTGAGCATGTACT 59.130 41.667 0.00 0.00 0.00 2.73
2603 6824 4.034048 CCGGTTGTATTTCTGAGCATGTAC 59.966 45.833 0.00 0.00 0.00 2.90
2604 6825 4.188462 CCGGTTGTATTTCTGAGCATGTA 58.812 43.478 0.00 0.00 0.00 2.29
2606 6827 3.009723 ACCGGTTGTATTTCTGAGCATG 58.990 45.455 0.00 0.00 0.00 4.06
2607 6828 3.350219 ACCGGTTGTATTTCTGAGCAT 57.650 42.857 0.00 0.00 0.00 3.79
2608 6829 2.851263 ACCGGTTGTATTTCTGAGCA 57.149 45.000 0.00 0.00 0.00 4.26
2609 6830 3.621715 CCTTACCGGTTGTATTTCTGAGC 59.378 47.826 15.04 0.00 0.00 4.26
2610 6831 3.621715 GCCTTACCGGTTGTATTTCTGAG 59.378 47.826 15.04 0.00 34.25 3.35
2611 6832 3.008157 TGCCTTACCGGTTGTATTTCTGA 59.992 43.478 15.04 0.00 34.25 3.27
2612 6833 3.340034 TGCCTTACCGGTTGTATTTCTG 58.660 45.455 15.04 0.00 34.25 3.02
2613 6834 3.706600 TGCCTTACCGGTTGTATTTCT 57.293 42.857 15.04 0.00 34.25 2.52
2615 6836 5.532664 TTTTTGCCTTACCGGTTGTATTT 57.467 34.783 15.04 0.00 34.25 1.40
2643 6864 4.861454 AGGATAGGAGTCTAGGGAGCTTAT 59.139 45.833 0.00 0.00 0.00 1.73
2644 6865 4.043561 CAGGATAGGAGTCTAGGGAGCTTA 59.956 50.000 0.00 0.00 0.00 3.09
2645 6866 3.068237 AGGATAGGAGTCTAGGGAGCTT 58.932 50.000 0.00 0.00 0.00 3.74
2646 6867 2.378547 CAGGATAGGAGTCTAGGGAGCT 59.621 54.545 0.00 0.00 0.00 4.09
2649 6870 5.752332 GCATAACAGGATAGGAGTCTAGGGA 60.752 48.000 0.00 0.00 0.00 4.20
2651 6872 5.080337 TGCATAACAGGATAGGAGTCTAGG 58.920 45.833 0.00 0.00 0.00 3.02
2652 6873 6.451393 GTTGCATAACAGGATAGGAGTCTAG 58.549 44.000 0.00 0.00 36.78 2.43
2653 6874 5.304614 GGTTGCATAACAGGATAGGAGTCTA 59.695 44.000 0.00 0.00 38.58 2.59
2655 6876 4.381411 GGTTGCATAACAGGATAGGAGTC 58.619 47.826 0.00 0.00 38.58 3.36
2656 6877 3.181465 CGGTTGCATAACAGGATAGGAGT 60.181 47.826 0.00 0.00 38.58 3.85
2658 6879 2.484770 GCGGTTGCATAACAGGATAGGA 60.485 50.000 0.00 0.00 42.15 2.94
2659 6880 1.873591 GCGGTTGCATAACAGGATAGG 59.126 52.381 0.00 0.00 42.15 2.57
2660 6881 1.873591 GGCGGTTGCATAACAGGATAG 59.126 52.381 0.00 0.00 45.35 2.08
2661 6882 1.210722 TGGCGGTTGCATAACAGGATA 59.789 47.619 0.00 0.00 45.35 2.59
2664 6885 0.381801 GATGGCGGTTGCATAACAGG 59.618 55.000 0.00 0.00 45.35 4.00
2665 6886 0.381801 GGATGGCGGTTGCATAACAG 59.618 55.000 0.00 0.00 45.35 3.16
2666 6887 1.372838 CGGATGGCGGTTGCATAACA 61.373 55.000 0.00 0.00 45.35 2.41
2667 6888 1.092921 TCGGATGGCGGTTGCATAAC 61.093 55.000 0.00 0.00 45.35 1.89
2669 6890 1.092921 GTTCGGATGGCGGTTGCATA 61.093 55.000 0.00 0.00 45.35 3.14
2672 6893 3.810896 GGTTCGGATGGCGGTTGC 61.811 66.667 0.00 0.00 41.71 4.17
2673 6894 3.496131 CGGTTCGGATGGCGGTTG 61.496 66.667 0.00 0.00 0.00 3.77
2684 6905 2.486918 GGGGTATATTCAACCGGTTCG 58.513 52.381 19.24 13.41 37.93 3.95
2686 6907 2.625695 CGGGGTATATTCAACCGGTT 57.374 50.000 15.86 15.86 40.79 4.44
2690 6911 2.632987 AGCACGGGGTATATTCAACC 57.367 50.000 0.00 0.00 36.19 3.77
2692 6913 3.039743 TGGTAGCACGGGGTATATTCAA 58.960 45.455 0.00 0.00 0.00 2.69
2693 6914 2.680251 TGGTAGCACGGGGTATATTCA 58.320 47.619 0.00 0.00 0.00 2.57
2694 6915 3.514309 AGATGGTAGCACGGGGTATATTC 59.486 47.826 0.00 0.00 0.00 1.75
2695 6916 3.514309 GAGATGGTAGCACGGGGTATATT 59.486 47.826 0.00 0.00 0.00 1.28
2697 6918 2.522185 GAGATGGTAGCACGGGGTATA 58.478 52.381 0.00 0.00 0.00 1.47
2698 6919 1.339097 GAGATGGTAGCACGGGGTAT 58.661 55.000 0.00 0.00 0.00 2.73
2699 6920 0.757935 GGAGATGGTAGCACGGGGTA 60.758 60.000 0.00 0.00 0.00 3.69
2700 6921 2.064581 GGAGATGGTAGCACGGGGT 61.065 63.158 0.00 0.00 0.00 4.95
2701 6922 2.808206 GGGAGATGGTAGCACGGGG 61.808 68.421 0.00 0.00 0.00 5.73
2702 6923 1.410850 ATGGGAGATGGTAGCACGGG 61.411 60.000 0.00 0.00 0.00 5.28
2703 6924 0.034059 GATGGGAGATGGTAGCACGG 59.966 60.000 0.00 0.00 0.00 4.94
2704 6925 1.043816 AGATGGGAGATGGTAGCACG 58.956 55.000 0.00 0.00 0.00 5.34
2705 6926 1.765314 ACAGATGGGAGATGGTAGCAC 59.235 52.381 0.00 0.00 0.00 4.40
2708 6929 3.889538 TCGTTACAGATGGGAGATGGTAG 59.110 47.826 0.00 0.00 0.00 3.18
2709 6930 3.635373 GTCGTTACAGATGGGAGATGGTA 59.365 47.826 0.00 0.00 0.00 3.25
2711 6932 2.224066 GGTCGTTACAGATGGGAGATGG 60.224 54.545 0.00 0.00 0.00 3.51
2713 6934 2.747177 TGGTCGTTACAGATGGGAGAT 58.253 47.619 0.00 0.00 0.00 2.75
2714 6935 2.225382 TGGTCGTTACAGATGGGAGA 57.775 50.000 0.00 0.00 0.00 3.71
2715 6936 3.000727 GTTTGGTCGTTACAGATGGGAG 58.999 50.000 0.00 0.00 0.00 4.30
2716 6937 2.289819 GGTTTGGTCGTTACAGATGGGA 60.290 50.000 0.00 0.00 0.00 4.37
2717 6938 2.081462 GGTTTGGTCGTTACAGATGGG 58.919 52.381 0.00 0.00 0.00 4.00
2718 6939 3.053831 AGGTTTGGTCGTTACAGATGG 57.946 47.619 0.00 0.00 0.00 3.51
2719 6940 4.062293 TCAAGGTTTGGTCGTTACAGATG 58.938 43.478 0.00 0.00 0.00 2.90
2720 6941 4.345859 TCAAGGTTTGGTCGTTACAGAT 57.654 40.909 0.00 0.00 0.00 2.90
2721 6942 3.823281 TCAAGGTTTGGTCGTTACAGA 57.177 42.857 0.00 0.00 0.00 3.41
2722 6943 3.250040 CCTTCAAGGTTTGGTCGTTACAG 59.750 47.826 0.00 0.00 0.00 2.74
2723 6944 3.118334 TCCTTCAAGGTTTGGTCGTTACA 60.118 43.478 2.50 0.00 36.53 2.41
2724 6945 3.469739 TCCTTCAAGGTTTGGTCGTTAC 58.530 45.455 2.50 0.00 36.53 2.50
2726 6947 2.721425 TCCTTCAAGGTTTGGTCGTT 57.279 45.000 2.50 0.00 36.53 3.85
2729 6950 4.584743 ACTCAAATCCTTCAAGGTTTGGTC 59.415 41.667 21.60 0.00 37.18 4.02
2730 6951 4.546674 ACTCAAATCCTTCAAGGTTTGGT 58.453 39.130 21.60 17.31 37.18 3.67
2731 6952 4.829492 AGACTCAAATCCTTCAAGGTTTGG 59.171 41.667 21.60 11.73 37.18 3.28
2732 6953 5.767168 AGAGACTCAAATCCTTCAAGGTTTG 59.233 40.000 18.38 18.38 37.54 2.93
2733 6954 5.767168 CAGAGACTCAAATCCTTCAAGGTTT 59.233 40.000 2.50 0.00 36.53 3.27
2734 6955 5.163152 ACAGAGACTCAAATCCTTCAAGGTT 60.163 40.000 2.50 0.00 36.53 3.50
2735 6956 4.349342 ACAGAGACTCAAATCCTTCAAGGT 59.651 41.667 2.50 0.00 36.53 3.50
2736 6957 4.694509 CACAGAGACTCAAATCCTTCAAGG 59.305 45.833 5.02 0.00 36.46 3.61
2737 6958 4.153835 GCACAGAGACTCAAATCCTTCAAG 59.846 45.833 5.02 0.00 0.00 3.02
2738 6959 4.067896 GCACAGAGACTCAAATCCTTCAA 58.932 43.478 5.02 0.00 0.00 2.69
2739 6960 3.326006 AGCACAGAGACTCAAATCCTTCA 59.674 43.478 5.02 0.00 0.00 3.02
2740 6961 3.936564 AGCACAGAGACTCAAATCCTTC 58.063 45.455 5.02 0.00 0.00 3.46
2742 6963 4.323104 GGTAAGCACAGAGACTCAAATCCT 60.323 45.833 5.02 0.00 0.00 3.24
2743 6964 3.935828 GGTAAGCACAGAGACTCAAATCC 59.064 47.826 5.02 0.00 0.00 3.01
2744 6965 3.614616 CGGTAAGCACAGAGACTCAAATC 59.385 47.826 5.02 0.00 0.00 2.17
2745 6966 3.006967 ACGGTAAGCACAGAGACTCAAAT 59.993 43.478 5.02 0.00 0.00 2.32
2746 6967 2.364324 ACGGTAAGCACAGAGACTCAAA 59.636 45.455 5.02 0.00 0.00 2.69
2747 6968 1.961394 ACGGTAAGCACAGAGACTCAA 59.039 47.619 5.02 0.00 0.00 3.02
2751 6972 0.038159 AGCACGGTAAGCACAGAGAC 60.038 55.000 0.00 0.00 0.00 3.36
2752 6973 1.472878 CTAGCACGGTAAGCACAGAGA 59.527 52.381 0.00 0.00 0.00 3.10
2753 6974 1.202582 ACTAGCACGGTAAGCACAGAG 59.797 52.381 0.00 0.00 0.00 3.35
2755 6976 1.630148 GACTAGCACGGTAAGCACAG 58.370 55.000 0.00 0.00 0.00 3.66
2756 6977 0.245539 GGACTAGCACGGTAAGCACA 59.754 55.000 0.00 0.00 0.00 4.57
2757 6978 0.459759 GGGACTAGCACGGTAAGCAC 60.460 60.000 0.00 0.00 0.00 4.40
2758 6979 0.613853 AGGGACTAGCACGGTAAGCA 60.614 55.000 0.00 0.00 36.02 3.91
2759 6980 0.179108 CAGGGACTAGCACGGTAAGC 60.179 60.000 0.00 0.00 36.02 3.09
2762 6983 0.260816 ATCCAGGGACTAGCACGGTA 59.739 55.000 0.00 0.00 36.02 4.02
2764 6985 1.742768 GATCCAGGGACTAGCACGG 59.257 63.158 0.00 0.00 36.02 4.94
2765 6986 1.101635 TCGATCCAGGGACTAGCACG 61.102 60.000 0.00 0.00 36.02 5.34
2766 6987 1.112113 TTCGATCCAGGGACTAGCAC 58.888 55.000 0.00 0.00 36.02 4.40
2767 6988 1.112113 GTTCGATCCAGGGACTAGCA 58.888 55.000 0.00 0.00 36.02 3.49
2769 6990 1.604755 CGAGTTCGATCCAGGGACTAG 59.395 57.143 0.00 0.00 43.02 2.57
2770 6991 1.676746 CGAGTTCGATCCAGGGACTA 58.323 55.000 0.00 0.00 43.02 2.59
2771 6992 1.668101 GCGAGTTCGATCCAGGGACT 61.668 60.000 5.60 0.00 43.02 3.85
2774 6995 0.312416 CTAGCGAGTTCGATCCAGGG 59.688 60.000 5.60 0.00 43.02 4.45
2775 6996 0.318275 GCTAGCGAGTTCGATCCAGG 60.318 60.000 5.60 0.00 43.02 4.45
2776 6997 0.382158 TGCTAGCGAGTTCGATCCAG 59.618 55.000 10.77 0.00 43.02 3.86
2778 6999 0.100682 TGTGCTAGCGAGTTCGATCC 59.899 55.000 10.77 0.00 43.02 3.36
2780 7001 0.526211 TGTGTGCTAGCGAGTTCGAT 59.474 50.000 10.77 0.95 43.02 3.59
2781 7002 0.386858 GTGTGTGCTAGCGAGTTCGA 60.387 55.000 10.77 0.00 43.02 3.71
2782 7003 0.663269 TGTGTGTGCTAGCGAGTTCG 60.663 55.000 10.77 0.00 43.27 3.95
2783 7004 1.497991 TTGTGTGTGCTAGCGAGTTC 58.502 50.000 10.77 1.29 0.00 3.01
2784 7005 2.169832 ATTGTGTGTGCTAGCGAGTT 57.830 45.000 10.77 0.00 0.00 3.01
2785 7006 3.526931 ATATTGTGTGTGCTAGCGAGT 57.473 42.857 10.77 0.00 0.00 4.18
2787 7008 4.911514 TCTATATTGTGTGTGCTAGCGA 57.088 40.909 10.77 0.00 0.00 4.93
2789 7010 7.664082 ATTCATCTATATTGTGTGTGCTAGC 57.336 36.000 8.10 8.10 0.00 3.42
2790 7011 9.144747 GGTATTCATCTATATTGTGTGTGCTAG 57.855 37.037 0.00 0.00 0.00 3.42
2792 7013 7.508687 TGGTATTCATCTATATTGTGTGTGCT 58.491 34.615 0.00 0.00 0.00 4.40
2804 7025 9.277783 GCACTTGTTATTCTGGTATTCATCTAT 57.722 33.333 0.00 0.00 0.00 1.98
2805 7026 8.264347 TGCACTTGTTATTCTGGTATTCATCTA 58.736 33.333 0.00 0.00 0.00 1.98
2806 7027 7.112122 TGCACTTGTTATTCTGGTATTCATCT 58.888 34.615 0.00 0.00 0.00 2.90
2807 7028 7.320443 TGCACTTGTTATTCTGGTATTCATC 57.680 36.000 0.00 0.00 0.00 2.92
2808 7029 7.557358 TGATGCACTTGTTATTCTGGTATTCAT 59.443 33.333 0.00 0.00 0.00 2.57
2809 7030 6.883756 TGATGCACTTGTTATTCTGGTATTCA 59.116 34.615 0.00 0.00 0.00 2.57
2810 7031 7.320443 TGATGCACTTGTTATTCTGGTATTC 57.680 36.000 0.00 0.00 0.00 1.75
2811 7032 7.886629 ATGATGCACTTGTTATTCTGGTATT 57.113 32.000 0.00 0.00 0.00 1.89
2813 7034 7.701539 AAATGATGCACTTGTTATTCTGGTA 57.298 32.000 0.00 0.00 0.00 3.25
2814 7035 6.594788 AAATGATGCACTTGTTATTCTGGT 57.405 33.333 0.00 0.00 0.00 4.00
2820 7041 9.502145 CGTTGTAATAAATGATGCACTTGTTAT 57.498 29.630 0.00 0.00 0.00 1.89
2821 7042 8.508062 ACGTTGTAATAAATGATGCACTTGTTA 58.492 29.630 0.00 0.00 0.00 2.41
2822 7043 7.367285 ACGTTGTAATAAATGATGCACTTGTT 58.633 30.769 0.00 0.00 0.00 2.83
2826 7047 8.432110 TCATACGTTGTAATAAATGATGCACT 57.568 30.769 0.00 0.00 0.00 4.40
2828 7049 8.503196 GGATCATACGTTGTAATAAATGATGCA 58.497 33.333 15.84 0.00 40.09 3.96
2829 7050 8.503196 TGGATCATACGTTGTAATAAATGATGC 58.497 33.333 14.56 14.56 40.49 3.91
2832 7053 9.476202 CTCTGGATCATACGTTGTAATAAATGA 57.524 33.333 0.00 0.00 0.00 2.57
2833 7054 9.261180 ACTCTGGATCATACGTTGTAATAAATG 57.739 33.333 0.00 0.00 0.00 2.32
2872 8085 1.747355 GCCAAGTGCTATGCAGATTGT 59.253 47.619 13.01 0.00 40.08 2.71
2873 8086 2.486951 GCCAAGTGCTATGCAGATTG 57.513 50.000 0.00 9.24 40.08 2.67
2885 8098 6.441093 TGATTGAATAAAGCTAGCCAAGTG 57.559 37.500 12.13 0.00 0.00 3.16
2887 8100 7.315142 TGTTTGATTGAATAAAGCTAGCCAAG 58.685 34.615 12.13 0.00 0.00 3.61
2889 8102 6.127647 CCTGTTTGATTGAATAAAGCTAGCCA 60.128 38.462 12.13 0.00 0.00 4.75
2890 8103 6.268566 CCTGTTTGATTGAATAAAGCTAGCC 58.731 40.000 12.13 0.00 0.00 3.93
2891 8104 6.268566 CCCTGTTTGATTGAATAAAGCTAGC 58.731 40.000 6.62 6.62 0.00 3.42
2892 8105 6.603201 TCCCCTGTTTGATTGAATAAAGCTAG 59.397 38.462 0.00 0.00 0.00 3.42
2893 8106 6.489603 TCCCCTGTTTGATTGAATAAAGCTA 58.510 36.000 0.00 0.00 0.00 3.32
2895 8108 5.659440 TCCCCTGTTTGATTGAATAAAGC 57.341 39.130 0.00 0.00 0.00 3.51
2897 8110 8.028652 ACTTTTCCCCTGTTTGATTGAATAAA 57.971 30.769 0.00 0.00 0.00 1.40
2898 8111 7.610580 ACTTTTCCCCTGTTTGATTGAATAA 57.389 32.000 0.00 0.00 0.00 1.40
2900 8113 6.014584 GGTACTTTTCCCCTGTTTGATTGAAT 60.015 38.462 0.00 0.00 0.00 2.57
2901 8114 5.303333 GGTACTTTTCCCCTGTTTGATTGAA 59.697 40.000 0.00 0.00 0.00 2.69
2902 8115 4.830600 GGTACTTTTCCCCTGTTTGATTGA 59.169 41.667 0.00 0.00 0.00 2.57
2903 8116 4.586841 TGGTACTTTTCCCCTGTTTGATTG 59.413 41.667 0.00 0.00 0.00 2.67
2904 8117 4.810345 TGGTACTTTTCCCCTGTTTGATT 58.190 39.130 0.00 0.00 0.00 2.57
2905 8118 4.105697 TCTGGTACTTTTCCCCTGTTTGAT 59.894 41.667 0.00 0.00 0.00 2.57
2909 8122 4.529716 TTTCTGGTACTTTTCCCCTGTT 57.470 40.909 0.00 0.00 0.00 3.16
2910 8123 4.529716 TTTTCTGGTACTTTTCCCCTGT 57.470 40.909 0.00 0.00 0.00 4.00
2911 8124 6.349033 CGTTATTTTCTGGTACTTTTCCCCTG 60.349 42.308 0.00 0.00 0.00 4.45
2912 8125 5.708697 CGTTATTTTCTGGTACTTTTCCCCT 59.291 40.000 0.00 0.00 0.00 4.79
2913 8126 5.706833 TCGTTATTTTCTGGTACTTTTCCCC 59.293 40.000 0.00 0.00 0.00 4.81
2914 8127 6.806388 TCGTTATTTTCTGGTACTTTTCCC 57.194 37.500 0.00 0.00 0.00 3.97
2916 8129 8.718734 ACTCATCGTTATTTTCTGGTACTTTTC 58.281 33.333 0.00 0.00 0.00 2.29
2919 8132 6.817140 GGACTCATCGTTATTTTCTGGTACTT 59.183 38.462 0.00 0.00 0.00 2.24
2920 8133 6.338937 GGACTCATCGTTATTTTCTGGTACT 58.661 40.000 0.00 0.00 0.00 2.73
2922 8135 5.188163 TGGGACTCATCGTTATTTTCTGGTA 59.812 40.000 0.00 0.00 0.00 3.25
2924 8137 4.513442 TGGGACTCATCGTTATTTTCTGG 58.487 43.478 0.00 0.00 0.00 3.86
2925 8138 6.292389 GATGGGACTCATCGTTATTTTCTG 57.708 41.667 0.00 0.00 42.29 3.02
2953 9199 2.513204 CTCAGCATCGCCAGTGGG 60.513 66.667 12.15 0.89 37.18 4.61
2954 9200 2.104859 CACTCAGCATCGCCAGTGG 61.105 63.158 4.20 4.20 36.74 4.00
2955 9201 2.747822 GCACTCAGCATCGCCAGTG 61.748 63.158 10.06 10.06 44.79 3.66
2956 9202 2.435586 GCACTCAGCATCGCCAGT 60.436 61.111 0.00 0.00 44.79 4.00
2968 9214 2.505118 GGTCGCGAGTCTGCACTC 60.505 66.667 10.24 0.00 45.19 3.51
2969 9215 4.057428 GGGTCGCGAGTCTGCACT 62.057 66.667 10.24 0.00 34.57 4.40
2970 9216 2.209064 TTAGGGTCGCGAGTCTGCAC 62.209 60.000 10.24 0.00 34.15 4.57
2971 9217 1.974875 TTAGGGTCGCGAGTCTGCA 60.975 57.895 10.24 0.00 34.15 4.41
2972 9218 1.516603 GTTAGGGTCGCGAGTCTGC 60.517 63.158 10.24 0.00 0.00 4.26
2974 9220 2.404995 CCGTTAGGGTCGCGAGTCT 61.405 63.158 10.24 12.91 0.00 3.24
2975 9221 2.101770 CCGTTAGGGTCGCGAGTC 59.898 66.667 10.24 4.69 0.00 3.36
2984 9230 3.065925 CGAAGAGTAAGGTACCGTTAGGG 59.934 52.174 5.42 0.00 43.47 3.53
2985 9231 3.691609 ACGAAGAGTAAGGTACCGTTAGG 59.308 47.826 5.42 0.00 45.13 2.69
2986 9232 4.633565 AGACGAAGAGTAAGGTACCGTTAG 59.366 45.833 5.42 0.00 0.00 2.34
2988 9234 3.190118 CAGACGAAGAGTAAGGTACCGTT 59.810 47.826 5.42 3.80 0.00 4.44
2989 9235 2.746362 CAGACGAAGAGTAAGGTACCGT 59.254 50.000 6.18 5.80 0.00 4.83
2990 9236 3.005554 TCAGACGAAGAGTAAGGTACCG 58.994 50.000 6.18 0.00 0.00 4.02
2991 9237 5.579564 ATTCAGACGAAGAGTAAGGTACC 57.420 43.478 2.73 2.73 33.74 3.34
2993 9239 7.228906 CAGGATATTCAGACGAAGAGTAAGGTA 59.771 40.741 0.00 0.00 33.74 3.08
2996 9242 5.918011 GCAGGATATTCAGACGAAGAGTAAG 59.082 44.000 0.00 0.00 33.74 2.34
2998 9244 4.887655 TGCAGGATATTCAGACGAAGAGTA 59.112 41.667 0.00 0.00 33.74 2.59
3001 9247 4.081697 TGTTGCAGGATATTCAGACGAAGA 60.082 41.667 0.00 0.00 33.74 2.87
3002 9248 4.183865 TGTTGCAGGATATTCAGACGAAG 58.816 43.478 0.00 0.00 33.74 3.79
3003 9249 4.200838 TGTTGCAGGATATTCAGACGAA 57.799 40.909 0.00 0.00 35.05 3.85
3004 9250 3.885724 TGTTGCAGGATATTCAGACGA 57.114 42.857 0.00 0.00 0.00 4.20
3005 9251 4.122046 TCATGTTGCAGGATATTCAGACG 58.878 43.478 0.00 0.00 0.00 4.18
3006 9252 5.236047 GTCTCATGTTGCAGGATATTCAGAC 59.764 44.000 0.00 0.00 0.00 3.51
3007 9253 5.363101 GTCTCATGTTGCAGGATATTCAGA 58.637 41.667 0.00 0.00 0.00 3.27
3008 9254 4.210746 CGTCTCATGTTGCAGGATATTCAG 59.789 45.833 0.00 0.00 0.00 3.02
3009 9255 4.122046 CGTCTCATGTTGCAGGATATTCA 58.878 43.478 0.00 0.00 0.00 2.57
3011 9257 4.142609 ACGTCTCATGTTGCAGGATATT 57.857 40.909 0.00 0.00 0.00 1.28
3012 9258 3.827008 ACGTCTCATGTTGCAGGATAT 57.173 42.857 0.00 0.00 0.00 1.63
3013 9259 3.261580 CAACGTCTCATGTTGCAGGATA 58.738 45.455 0.00 0.00 38.15 2.59
3014 9260 2.079158 CAACGTCTCATGTTGCAGGAT 58.921 47.619 0.00 0.00 38.15 3.24
3026 11277 2.224066 ACCTATATGGCTGCAACGTCTC 60.224 50.000 0.50 0.00 40.22 3.36
3027 11278 1.762957 ACCTATATGGCTGCAACGTCT 59.237 47.619 0.50 0.00 40.22 4.18
3028 11279 2.135933 GACCTATATGGCTGCAACGTC 58.864 52.381 0.50 0.00 40.22 4.34
3029 11280 1.484653 TGACCTATATGGCTGCAACGT 59.515 47.619 0.50 0.00 40.22 3.99
3031 11282 6.824305 AATATTGACCTATATGGCTGCAAC 57.176 37.500 0.50 0.00 40.22 4.17
3032 11283 7.505248 TCAAAATATTGACCTATATGGCTGCAA 59.495 33.333 0.50 0.00 40.59 4.08
3033 11284 7.003482 TCAAAATATTGACCTATATGGCTGCA 58.997 34.615 0.50 0.00 40.59 4.41
3034 11285 7.452880 TCAAAATATTGACCTATATGGCTGC 57.547 36.000 0.00 0.00 40.59 5.25
3035 11286 9.850628 CATTCAAAATATTGACCTATATGGCTG 57.149 33.333 0.00 0.00 45.01 4.85
3036 11287 9.592196 ACATTCAAAATATTGACCTATATGGCT 57.408 29.630 0.00 0.00 45.01 4.75
3043 11294 9.194972 TGCCAATACATTCAAAATATTGACCTA 57.805 29.630 5.07 0.00 45.01 3.08
3044 11295 8.076910 TGCCAATACATTCAAAATATTGACCT 57.923 30.769 5.07 0.00 45.01 3.85
3046 11297 9.369904 ACTTGCCAATACATTCAAAATATTGAC 57.630 29.630 5.07 0.00 45.01 3.18
3047 11298 9.941325 AACTTGCCAATACATTCAAAATATTGA 57.059 25.926 5.07 0.00 43.70 2.57
3052 11303 8.147058 TGTGTAACTTGCCAATACATTCAAAAT 58.853 29.630 0.00 0.00 38.04 1.82
3053 11304 7.492524 TGTGTAACTTGCCAATACATTCAAAA 58.507 30.769 0.00 0.00 38.04 2.44
3054 11305 7.043961 TGTGTAACTTGCCAATACATTCAAA 57.956 32.000 0.00 0.00 38.04 2.69
3055 11306 6.294453 CCTGTGTAACTTGCCAATACATTCAA 60.294 38.462 0.00 0.00 38.04 2.69
3056 11307 5.182950 CCTGTGTAACTTGCCAATACATTCA 59.817 40.000 0.00 0.00 38.04 2.57
3058 11309 5.321102 TCCTGTGTAACTTGCCAATACATT 58.679 37.500 0.00 0.00 38.04 2.71
3059 11310 4.917385 TCCTGTGTAACTTGCCAATACAT 58.083 39.130 0.00 0.00 38.04 2.29
3060 11311 4.202419 ACTCCTGTGTAACTTGCCAATACA 60.202 41.667 0.00 0.00 38.04 2.29
3061 11312 4.324267 ACTCCTGTGTAACTTGCCAATAC 58.676 43.478 0.00 0.00 38.04 1.89
3062 11313 4.634012 ACTCCTGTGTAACTTGCCAATA 57.366 40.909 0.00 0.00 38.04 1.90
3064 11315 4.425180 TTACTCCTGTGTAACTTGCCAA 57.575 40.909 0.00 0.00 38.04 4.52
3065 11316 4.634012 ATTACTCCTGTGTAACTTGCCA 57.366 40.909 0.00 0.00 38.04 4.92
3066 11317 8.904099 ATATTATTACTCCTGTGTAACTTGCC 57.096 34.615 0.00 0.00 38.04 4.52
3073 11324 9.021807 GGTCTGCTATATTATTACTCCTGTGTA 57.978 37.037 0.00 0.00 0.00 2.90
3075 11326 8.128322 AGGTCTGCTATATTATTACTCCTGTG 57.872 38.462 0.00 0.00 0.00 3.66
3076 11327 9.245481 GTAGGTCTGCTATATTATTACTCCTGT 57.755 37.037 0.00 0.00 0.00 4.00
3077 11328 9.244292 TGTAGGTCTGCTATATTATTACTCCTG 57.756 37.037 0.00 0.00 0.00 3.86
3078 11329 9.998752 ATGTAGGTCTGCTATATTATTACTCCT 57.001 33.333 0.00 0.00 0.00 3.69
3091 11342 9.868160 ACTATGCATATATATGTAGGTCTGCTA 57.132 33.333 21.10 6.32 36.11 3.49
3092 11343 8.774546 ACTATGCATATATATGTAGGTCTGCT 57.225 34.615 21.10 5.57 36.11 4.24
3108 11359 8.217799 AGCCTTCCTTTTGTTATACTATGCATA 58.782 33.333 6.20 6.20 0.00 3.14
3109 11360 7.062957 AGCCTTCCTTTTGTTATACTATGCAT 58.937 34.615 3.79 3.79 0.00 3.96
3110 11361 6.423182 AGCCTTCCTTTTGTTATACTATGCA 58.577 36.000 0.00 0.00 0.00 3.96
3111 11362 6.944234 AGCCTTCCTTTTGTTATACTATGC 57.056 37.500 0.00 0.00 0.00 3.14
3112 11363 8.506168 TCAAGCCTTCCTTTTGTTATACTATG 57.494 34.615 0.00 0.00 0.00 2.23
3114 11365 7.110155 CCTCAAGCCTTCCTTTTGTTATACTA 58.890 38.462 0.00 0.00 0.00 1.82
3115 11366 5.946377 CCTCAAGCCTTCCTTTTGTTATACT 59.054 40.000 0.00 0.00 0.00 2.12
3117 11368 5.222254 ACCCTCAAGCCTTCCTTTTGTTATA 60.222 40.000 0.00 0.00 0.00 0.98
3119 11370 3.117284 ACCCTCAAGCCTTCCTTTTGTTA 60.117 43.478 0.00 0.00 0.00 2.41
3121 11372 1.217942 ACCCTCAAGCCTTCCTTTTGT 59.782 47.619 0.00 0.00 0.00 2.83
3124 11375 2.775490 AAACCCTCAAGCCTTCCTTT 57.225 45.000 0.00 0.00 0.00 3.11
3125 11376 2.716969 AGTAAACCCTCAAGCCTTCCTT 59.283 45.455 0.00 0.00 0.00 3.36
3126 11377 2.349445 AGTAAACCCTCAAGCCTTCCT 58.651 47.619 0.00 0.00 0.00 3.36
3127 11378 2.881111 AGTAAACCCTCAAGCCTTCC 57.119 50.000 0.00 0.00 0.00 3.46
3128 11379 4.796290 GCAAAAGTAAACCCTCAAGCCTTC 60.796 45.833 0.00 0.00 0.00 3.46
3129 11380 3.069586 GCAAAAGTAAACCCTCAAGCCTT 59.930 43.478 0.00 0.00 0.00 4.35
3130 11381 2.628178 GCAAAAGTAAACCCTCAAGCCT 59.372 45.455 0.00 0.00 0.00 4.58
3133 11384 5.514274 TTCTGCAAAAGTAAACCCTCAAG 57.486 39.130 0.00 0.00 0.00 3.02
3136 11387 4.038042 AGCTTTCTGCAAAAGTAAACCCTC 59.962 41.667 17.10 4.46 45.94 4.30
3137 11388 3.960755 AGCTTTCTGCAAAAGTAAACCCT 59.039 39.130 17.10 6.96 45.94 4.34
3138 11389 4.051237 CAGCTTTCTGCAAAAGTAAACCC 58.949 43.478 17.10 5.43 45.94 4.11
3139 11390 4.932146 TCAGCTTTCTGCAAAAGTAAACC 58.068 39.130 17.10 5.92 45.94 3.27
3140 11391 7.468922 AAATCAGCTTTCTGCAAAAGTAAAC 57.531 32.000 17.10 6.17 45.94 2.01
3142 11393 9.410556 GATAAAATCAGCTTTCTGCAAAAGTAA 57.589 29.630 17.10 8.13 45.94 2.24
3143 11394 8.028938 GGATAAAATCAGCTTTCTGCAAAAGTA 58.971 33.333 17.10 8.35 45.94 2.24
3144 11395 6.870439 GGATAAAATCAGCTTTCTGCAAAAGT 59.130 34.615 17.10 6.81 45.94 2.66
3145 11396 7.095270 AGGATAAAATCAGCTTTCTGCAAAAG 58.905 34.615 13.66 13.66 45.94 2.27
3146 11397 6.996509 AGGATAAAATCAGCTTTCTGCAAAA 58.003 32.000 0.00 0.00 45.94 2.44
3147 11398 6.594788 AGGATAAAATCAGCTTTCTGCAAA 57.405 33.333 0.00 0.00 45.94 3.68
3148 11399 7.701539 TTAGGATAAAATCAGCTTTCTGCAA 57.298 32.000 0.00 0.00 45.94 4.08
3149 11400 7.886629 ATTAGGATAAAATCAGCTTTCTGCA 57.113 32.000 0.00 0.00 45.94 4.41
3150 11401 9.670719 GTTATTAGGATAAAATCAGCTTTCTGC 57.329 33.333 0.00 0.00 33.76 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.