Multiple sequence alignment - TraesCS3D01G409600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G409600 chr3D 100.000 3283 0 0 1 3283 523399803 523403085 0.000000e+00 6063
1 TraesCS3D01G409600 chr3D 98.397 2682 30 6 609 3283 20288618 20291293 0.000000e+00 4702
2 TraesCS3D01G409600 chr3D 94.961 2679 61 31 609 3283 532071287 532068679 0.000000e+00 4132
3 TraesCS3D01G409600 chr1D 97.613 2681 35 6 609 3283 30073891 30071234 0.000000e+00 4569
4 TraesCS3D01G409600 chr6D 95.480 2677 50 28 609 3283 175423683 175426290 0.000000e+00 4207
5 TraesCS3D01G409600 chr6D 98.131 107 2 0 3177 3283 438336440 438336334 1.560000e-43 187
6 TraesCS3D01G409600 chr7D 95.078 2682 55 38 614 3283 540442137 540444753 0.000000e+00 4150
7 TraesCS3D01G409600 chr7D 94.925 2680 58 36 608 3283 526288224 526290829 0.000000e+00 4124
8 TraesCS3D01G409600 chr7D 90.896 692 40 13 2452 3128 46572236 46572919 0.000000e+00 907
9 TraesCS3D01G409600 chr7D 98.131 107 2 0 3177 3283 93607776 93607882 1.560000e-43 187
10 TraesCS3D01G409600 chr5D 94.845 2677 53 29 609 3283 430983990 430981397 0.000000e+00 4100
11 TraesCS3D01G409600 chr4D 94.707 2683 61 34 609 3283 391455571 391458180 0.000000e+00 4093
12 TraesCS3D01G409600 chr2D 94.253 2697 63 32 609 3283 147381591 147378965 0.000000e+00 4037
13 TraesCS3D01G409600 chr2D 92.579 795 18 13 2495 3283 513032295 513031536 0.000000e+00 1103
14 TraesCS3D01G409600 chr2D 92.453 795 19 12 2495 3283 7523860 7523101 0.000000e+00 1098
15 TraesCS3D01G409600 chr2D 93.617 94 5 1 516 609 465154343 465154251 4.420000e-29 139
16 TraesCS3D01G409600 chr2D 96.386 83 3 0 527 609 13622452 13622534 1.590000e-28 137
17 TraesCS3D01G409600 chr2D 88.393 112 8 5 524 633 638323170 638323062 2.660000e-26 130
18 TraesCS3D01G409600 chr4A 91.100 2719 154 32 609 3283 521945178 521947852 0.000000e+00 3600
19 TraesCS3D01G409600 chr4A 93.407 91 5 1 520 609 712733805 712733715 2.060000e-27 134
20 TraesCS3D01G409600 chr3A 89.608 2627 174 39 609 3178 27908720 27906136 0.000000e+00 3247
21 TraesCS3D01G409600 chr5A 90.886 1975 128 29 609 2549 647551125 647553081 0.000000e+00 2603
22 TraesCS3D01G409600 chr5A 90.725 690 28 13 2080 2742 567494982 567494302 0.000000e+00 887
23 TraesCS3D01G409600 chr5B 94.700 1566 50 6 1725 3283 24143622 24142083 0.000000e+00 2401
24 TraesCS3D01G409600 chr3B 94.444 1566 42 7 1725 3283 470856769 470858296 0.000000e+00 2368
25 TraesCS3D01G409600 chr6B 93.767 1476 61 13 1725 3188 40797220 40795764 0.000000e+00 2187
26 TraesCS3D01G409600 chr6B 94.444 90 4 1 520 609 96970853 96970765 1.590000e-28 137
27 TraesCS3D01G409600 chr2B 91.048 1050 54 10 609 1656 750454421 750453410 0.000000e+00 1382
28 TraesCS3D01G409600 chr2B 94.505 91 3 2 522 611 46846075 46846164 4.420000e-29 139
29 TraesCS3D01G409600 chrUn 93.548 93 3 3 518 609 92739003 92738913 5.710000e-28 135
30 TraesCS3D01G409600 chr7B 94.382 89 3 1 523 609 440325595 440325683 5.710000e-28 135
31 TraesCS3D01G409600 chr7B 93.103 87 5 1 523 609 450586463 450586548 3.440000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G409600 chr3D 523399803 523403085 3282 False 6063 6063 100.000 1 3283 1 chr3D.!!$F2 3282
1 TraesCS3D01G409600 chr3D 20288618 20291293 2675 False 4702 4702 98.397 609 3283 1 chr3D.!!$F1 2674
2 TraesCS3D01G409600 chr3D 532068679 532071287 2608 True 4132 4132 94.961 609 3283 1 chr3D.!!$R1 2674
3 TraesCS3D01G409600 chr1D 30071234 30073891 2657 True 4569 4569 97.613 609 3283 1 chr1D.!!$R1 2674
4 TraesCS3D01G409600 chr6D 175423683 175426290 2607 False 4207 4207 95.480 609 3283 1 chr6D.!!$F1 2674
5 TraesCS3D01G409600 chr7D 540442137 540444753 2616 False 4150 4150 95.078 614 3283 1 chr7D.!!$F4 2669
6 TraesCS3D01G409600 chr7D 526288224 526290829 2605 False 4124 4124 94.925 608 3283 1 chr7D.!!$F3 2675
7 TraesCS3D01G409600 chr7D 46572236 46572919 683 False 907 907 90.896 2452 3128 1 chr7D.!!$F1 676
8 TraesCS3D01G409600 chr5D 430981397 430983990 2593 True 4100 4100 94.845 609 3283 1 chr5D.!!$R1 2674
9 TraesCS3D01G409600 chr4D 391455571 391458180 2609 False 4093 4093 94.707 609 3283 1 chr4D.!!$F1 2674
10 TraesCS3D01G409600 chr2D 147378965 147381591 2626 True 4037 4037 94.253 609 3283 1 chr2D.!!$R2 2674
11 TraesCS3D01G409600 chr2D 513031536 513032295 759 True 1103 1103 92.579 2495 3283 1 chr2D.!!$R4 788
12 TraesCS3D01G409600 chr2D 7523101 7523860 759 True 1098 1098 92.453 2495 3283 1 chr2D.!!$R1 788
13 TraesCS3D01G409600 chr4A 521945178 521947852 2674 False 3600 3600 91.100 609 3283 1 chr4A.!!$F1 2674
14 TraesCS3D01G409600 chr3A 27906136 27908720 2584 True 3247 3247 89.608 609 3178 1 chr3A.!!$R1 2569
15 TraesCS3D01G409600 chr5A 647551125 647553081 1956 False 2603 2603 90.886 609 2549 1 chr5A.!!$F1 1940
16 TraesCS3D01G409600 chr5A 567494302 567494982 680 True 887 887 90.725 2080 2742 1 chr5A.!!$R1 662
17 TraesCS3D01G409600 chr5B 24142083 24143622 1539 True 2401 2401 94.700 1725 3283 1 chr5B.!!$R1 1558
18 TraesCS3D01G409600 chr3B 470856769 470858296 1527 False 2368 2368 94.444 1725 3283 1 chr3B.!!$F1 1558
19 TraesCS3D01G409600 chr6B 40795764 40797220 1456 True 2187 2187 93.767 1725 3188 1 chr6B.!!$R1 1463
20 TraesCS3D01G409600 chr2B 750453410 750454421 1011 True 1382 1382 91.048 609 1656 1 chr2B.!!$R1 1047

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
473 474 0.035317 AAGCCACGCTGAGAATGACA 59.965 50.0 0.0 0.0 39.62 3.58 F
474 475 0.671781 AGCCACGCTGAGAATGACAC 60.672 55.0 0.0 0.0 37.57 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1363 1390 0.399949 TGGTGTCTGGTTCCTCCTGT 60.400 55.0 0.0 0.0 36.66 4.00 R
2282 2369 2.235898 CTCTAACTTCTCCTTGCTGCCT 59.764 50.0 0.0 0.0 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.156664 GTACTCGCAGTACTTCTCAACA 57.843 45.455 15.13 0.00 45.70 3.33
45 46 3.944055 ACTCGCAGTACTTCTCAACAT 57.056 42.857 0.00 0.00 0.00 2.71
46 47 5.877031 GTACTCGCAGTACTTCTCAACATA 58.123 41.667 15.13 0.00 45.70 2.29
47 48 5.584253 ACTCGCAGTACTTCTCAACATAT 57.416 39.130 0.00 0.00 0.00 1.78
48 49 5.583495 ACTCGCAGTACTTCTCAACATATC 58.417 41.667 0.00 0.00 0.00 1.63
49 50 5.125578 ACTCGCAGTACTTCTCAACATATCA 59.874 40.000 0.00 0.00 0.00 2.15
50 51 5.582550 TCGCAGTACTTCTCAACATATCAG 58.417 41.667 0.00 0.00 0.00 2.90
51 52 5.125578 TCGCAGTACTTCTCAACATATCAGT 59.874 40.000 0.00 0.00 0.00 3.41
52 53 5.807520 CGCAGTACTTCTCAACATATCAGTT 59.192 40.000 0.00 0.00 0.00 3.16
54 55 6.036517 GCAGTACTTCTCAACATATCAGTTGG 59.963 42.308 6.95 0.00 46.74 3.77
55 56 7.099764 CAGTACTTCTCAACATATCAGTTGGT 58.900 38.462 6.95 0.66 46.74 3.67
56 57 7.604164 CAGTACTTCTCAACATATCAGTTGGTT 59.396 37.037 6.95 0.00 46.74 3.67
57 58 8.157476 AGTACTTCTCAACATATCAGTTGGTTT 58.843 33.333 6.95 0.00 46.74 3.27
58 59 7.823745 ACTTCTCAACATATCAGTTGGTTTT 57.176 32.000 6.95 0.00 46.74 2.43
59 60 7.651808 ACTTCTCAACATATCAGTTGGTTTTG 58.348 34.615 6.95 0.00 46.74 2.44
60 61 6.573664 TCTCAACATATCAGTTGGTTTTGG 57.426 37.500 6.95 0.00 46.74 3.28
61 62 6.068010 TCTCAACATATCAGTTGGTTTTGGT 58.932 36.000 6.95 0.00 46.74 3.67
62 63 7.227873 TCTCAACATATCAGTTGGTTTTGGTA 58.772 34.615 6.95 0.00 46.74 3.25
63 64 7.721842 TCTCAACATATCAGTTGGTTTTGGTAA 59.278 33.333 6.95 0.00 46.74 2.85
64 65 8.415950 TCAACATATCAGTTGGTTTTGGTAAT 57.584 30.769 6.95 0.00 46.74 1.89
65 66 8.865090 TCAACATATCAGTTGGTTTTGGTAATT 58.135 29.630 6.95 0.00 46.74 1.40
72 73 7.822658 TCAGTTGGTTTTGGTAATTATAGTGC 58.177 34.615 0.00 0.00 0.00 4.40
73 74 7.033185 CAGTTGGTTTTGGTAATTATAGTGCC 58.967 38.462 0.00 0.00 0.00 5.01
74 75 6.153851 AGTTGGTTTTGGTAATTATAGTGCCC 59.846 38.462 0.00 0.00 0.00 5.36
75 76 5.580998 TGGTTTTGGTAATTATAGTGCCCA 58.419 37.500 0.00 0.00 0.00 5.36
76 77 6.017192 TGGTTTTGGTAATTATAGTGCCCAA 58.983 36.000 0.15 0.15 0.00 4.12
77 78 6.497259 TGGTTTTGGTAATTATAGTGCCCAAA 59.503 34.615 10.21 10.21 39.48 3.28
78 79 7.039270 GGTTTTGGTAATTATAGTGCCCAAAG 58.961 38.462 12.72 0.00 41.46 2.77
79 80 7.310175 GGTTTTGGTAATTATAGTGCCCAAAGT 60.310 37.037 12.72 0.00 41.46 2.66
80 81 7.399245 TTTGGTAATTATAGTGCCCAAAGTC 57.601 36.000 10.21 0.00 37.12 3.01
81 82 6.321821 TGGTAATTATAGTGCCCAAAGTCT 57.678 37.500 0.00 0.00 0.00 3.24
82 83 6.727394 TGGTAATTATAGTGCCCAAAGTCTT 58.273 36.000 0.00 0.00 0.00 3.01
83 84 6.826741 TGGTAATTATAGTGCCCAAAGTCTTC 59.173 38.462 0.00 0.00 0.00 2.87
84 85 6.826741 GGTAATTATAGTGCCCAAAGTCTTCA 59.173 38.462 0.00 0.00 0.00 3.02
85 86 7.012421 GGTAATTATAGTGCCCAAAGTCTTCAG 59.988 40.741 0.00 0.00 0.00 3.02
86 87 2.185004 TAGTGCCCAAAGTCTTCAGC 57.815 50.000 0.00 0.00 0.00 4.26
87 88 0.475906 AGTGCCCAAAGTCTTCAGCT 59.524 50.000 3.87 0.00 0.00 4.24
88 89 1.133668 AGTGCCCAAAGTCTTCAGCTT 60.134 47.619 0.00 0.00 0.00 3.74
89 90 1.268079 GTGCCCAAAGTCTTCAGCTTC 59.732 52.381 0.00 0.00 0.00 3.86
90 91 1.143684 TGCCCAAAGTCTTCAGCTTCT 59.856 47.619 0.00 0.00 0.00 2.85
91 92 2.371841 TGCCCAAAGTCTTCAGCTTCTA 59.628 45.455 0.00 0.00 0.00 2.10
92 93 3.181445 TGCCCAAAGTCTTCAGCTTCTAA 60.181 43.478 0.00 0.00 0.00 2.10
93 94 3.821033 GCCCAAAGTCTTCAGCTTCTAAA 59.179 43.478 0.00 0.00 0.00 1.85
94 95 4.460731 GCCCAAAGTCTTCAGCTTCTAAAT 59.539 41.667 0.00 0.00 0.00 1.40
95 96 5.392487 GCCCAAAGTCTTCAGCTTCTAAATC 60.392 44.000 0.00 0.00 0.00 2.17
96 97 5.707298 CCCAAAGTCTTCAGCTTCTAAATCA 59.293 40.000 0.00 0.00 0.00 2.57
97 98 6.376581 CCCAAAGTCTTCAGCTTCTAAATCAT 59.623 38.462 0.00 0.00 0.00 2.45
98 99 7.249147 CCAAAGTCTTCAGCTTCTAAATCATG 58.751 38.462 0.00 0.00 0.00 3.07
99 100 6.998968 AAGTCTTCAGCTTCTAAATCATGG 57.001 37.500 0.00 0.00 0.00 3.66
100 101 6.305272 AGTCTTCAGCTTCTAAATCATGGA 57.695 37.500 0.00 0.00 0.00 3.41
101 102 6.897986 AGTCTTCAGCTTCTAAATCATGGAT 58.102 36.000 0.00 0.00 0.00 3.41
102 103 7.344913 AGTCTTCAGCTTCTAAATCATGGATT 58.655 34.615 0.00 0.00 33.25 3.01
103 104 7.833183 AGTCTTCAGCTTCTAAATCATGGATTT 59.167 33.333 8.98 8.98 43.49 2.17
104 105 8.127954 GTCTTCAGCTTCTAAATCATGGATTTC 58.872 37.037 7.42 0.00 40.77 2.17
105 106 7.830697 TCTTCAGCTTCTAAATCATGGATTTCA 59.169 33.333 7.42 0.00 40.77 2.69
106 107 7.563888 TCAGCTTCTAAATCATGGATTTCAG 57.436 36.000 7.42 4.84 40.77 3.02
107 108 6.544931 TCAGCTTCTAAATCATGGATTTCAGG 59.455 38.462 7.42 1.61 40.77 3.86
108 109 6.320672 CAGCTTCTAAATCATGGATTTCAGGT 59.679 38.462 7.42 6.08 40.77 4.00
109 110 6.894103 AGCTTCTAAATCATGGATTTCAGGTT 59.106 34.615 7.42 0.00 40.77 3.50
110 111 6.976925 GCTTCTAAATCATGGATTTCAGGTTG 59.023 38.462 7.42 0.00 40.77 3.77
111 112 7.408756 TTCTAAATCATGGATTTCAGGTTGG 57.591 36.000 7.42 0.00 40.77 3.77
112 113 6.493166 TCTAAATCATGGATTTCAGGTTGGT 58.507 36.000 7.42 0.00 40.77 3.67
113 114 7.638444 TCTAAATCATGGATTTCAGGTTGGTA 58.362 34.615 7.42 0.00 40.77 3.25
114 115 6.780457 AAATCATGGATTTCAGGTTGGTAG 57.220 37.500 0.00 0.00 37.68 3.18
115 116 3.620488 TCATGGATTTCAGGTTGGTAGC 58.380 45.455 0.00 0.00 0.00 3.58
116 117 3.266772 TCATGGATTTCAGGTTGGTAGCT 59.733 43.478 0.00 0.00 0.00 3.32
117 118 3.806949 TGGATTTCAGGTTGGTAGCTT 57.193 42.857 0.00 0.00 0.00 3.74
118 119 4.919774 TGGATTTCAGGTTGGTAGCTTA 57.080 40.909 0.00 0.00 0.00 3.09
119 120 5.450818 TGGATTTCAGGTTGGTAGCTTAT 57.549 39.130 0.00 0.00 0.00 1.73
120 121 5.826643 TGGATTTCAGGTTGGTAGCTTATT 58.173 37.500 0.00 0.00 0.00 1.40
121 122 5.652014 TGGATTTCAGGTTGGTAGCTTATTG 59.348 40.000 0.00 0.00 0.00 1.90
122 123 5.652452 GGATTTCAGGTTGGTAGCTTATTGT 59.348 40.000 0.00 0.00 0.00 2.71
123 124 6.183360 GGATTTCAGGTTGGTAGCTTATTGTC 60.183 42.308 0.00 0.00 0.00 3.18
124 125 5.499004 TTCAGGTTGGTAGCTTATTGTCT 57.501 39.130 0.00 0.00 0.00 3.41
125 126 5.499004 TCAGGTTGGTAGCTTATTGTCTT 57.501 39.130 0.00 0.00 0.00 3.01
126 127 6.614694 TCAGGTTGGTAGCTTATTGTCTTA 57.385 37.500 0.00 0.00 0.00 2.10
127 128 6.640518 TCAGGTTGGTAGCTTATTGTCTTAG 58.359 40.000 0.00 0.00 0.00 2.18
128 129 5.294552 CAGGTTGGTAGCTTATTGTCTTAGC 59.705 44.000 0.00 0.00 35.16 3.09
129 130 4.270325 GGTTGGTAGCTTATTGTCTTAGCG 59.730 45.833 0.00 0.00 39.82 4.26
130 131 4.730949 TGGTAGCTTATTGTCTTAGCGT 57.269 40.909 0.00 0.00 39.82 5.07
131 132 5.840243 TGGTAGCTTATTGTCTTAGCGTA 57.160 39.130 0.00 0.00 39.82 4.42
132 133 6.401047 TGGTAGCTTATTGTCTTAGCGTAT 57.599 37.500 0.00 0.00 39.82 3.06
133 134 6.812998 TGGTAGCTTATTGTCTTAGCGTATT 58.187 36.000 0.00 0.00 39.82 1.89
134 135 7.944061 TGGTAGCTTATTGTCTTAGCGTATTA 58.056 34.615 0.00 0.00 39.82 0.98
135 136 8.080417 TGGTAGCTTATTGTCTTAGCGTATTAG 58.920 37.037 0.00 0.00 39.82 1.73
136 137 8.295288 GGTAGCTTATTGTCTTAGCGTATTAGA 58.705 37.037 0.00 0.00 39.82 2.10
137 138 9.843334 GTAGCTTATTGTCTTAGCGTATTAGAT 57.157 33.333 0.00 0.00 39.82 1.98
144 145 8.418597 TTGTCTTAGCGTATTAGATATTCCCT 57.581 34.615 0.00 0.00 0.00 4.20
145 146 8.053026 TGTCTTAGCGTATTAGATATTCCCTC 57.947 38.462 0.00 0.00 0.00 4.30
146 147 7.889073 TGTCTTAGCGTATTAGATATTCCCTCT 59.111 37.037 0.00 0.00 0.00 3.69
147 148 8.185505 GTCTTAGCGTATTAGATATTCCCTCTG 58.814 40.741 0.00 0.00 0.00 3.35
148 149 7.889073 TCTTAGCGTATTAGATATTCCCTCTGT 59.111 37.037 0.00 0.00 0.00 3.41
149 150 6.919775 AGCGTATTAGATATTCCCTCTGTT 57.080 37.500 0.00 0.00 0.00 3.16
150 151 7.304497 AGCGTATTAGATATTCCCTCTGTTT 57.696 36.000 0.00 0.00 0.00 2.83
151 152 7.379750 AGCGTATTAGATATTCCCTCTGTTTC 58.620 38.462 0.00 0.00 0.00 2.78
152 153 7.015292 AGCGTATTAGATATTCCCTCTGTTTCA 59.985 37.037 0.00 0.00 0.00 2.69
153 154 7.656137 GCGTATTAGATATTCCCTCTGTTTCAA 59.344 37.037 0.00 0.00 0.00 2.69
154 155 9.542462 CGTATTAGATATTCCCTCTGTTTCAAA 57.458 33.333 0.00 0.00 0.00 2.69
164 165 8.561738 TTCCCTCTGTTTCAAAATATAGTGTC 57.438 34.615 0.00 0.00 0.00 3.67
165 166 7.918076 TCCCTCTGTTTCAAAATATAGTGTCT 58.082 34.615 0.00 0.00 0.00 3.41
166 167 9.042450 TCCCTCTGTTTCAAAATATAGTGTCTA 57.958 33.333 0.00 0.00 0.00 2.59
167 168 9.838339 CCCTCTGTTTCAAAATATAGTGTCTAT 57.162 33.333 0.00 0.00 0.00 1.98
206 207 4.695217 ATGCAATACCAAACTAACACCG 57.305 40.909 0.00 0.00 0.00 4.94
207 208 3.478509 TGCAATACCAAACTAACACCGT 58.521 40.909 0.00 0.00 0.00 4.83
208 209 3.884091 TGCAATACCAAACTAACACCGTT 59.116 39.130 0.00 0.00 0.00 4.44
209 210 5.061853 TGCAATACCAAACTAACACCGTTA 58.938 37.500 0.00 0.00 0.00 3.18
210 211 5.179742 TGCAATACCAAACTAACACCGTTAG 59.820 40.000 11.42 11.42 0.00 2.34
211 212 5.409214 GCAATACCAAACTAACACCGTTAGA 59.591 40.000 18.25 0.00 0.00 2.10
212 213 6.093082 GCAATACCAAACTAACACCGTTAGAT 59.907 38.462 18.25 5.96 0.00 1.98
213 214 7.361457 GCAATACCAAACTAACACCGTTAGATT 60.361 37.037 18.25 11.14 0.00 2.40
214 215 7.838771 ATACCAAACTAACACCGTTAGATTC 57.161 36.000 18.25 0.00 0.00 2.52
215 216 4.687483 ACCAAACTAACACCGTTAGATTCG 59.313 41.667 18.25 9.53 0.00 3.34
216 217 4.435121 CCAAACTAACACCGTTAGATTCGC 60.435 45.833 18.25 0.00 0.00 4.70
217 218 2.884827 ACTAACACCGTTAGATTCGCC 58.115 47.619 18.25 0.00 0.00 5.54
218 219 2.231964 ACTAACACCGTTAGATTCGCCA 59.768 45.455 18.25 0.00 0.00 5.69
219 220 2.396590 AACACCGTTAGATTCGCCAT 57.603 45.000 0.00 0.00 0.00 4.40
220 221 1.651987 ACACCGTTAGATTCGCCATG 58.348 50.000 0.00 0.00 0.00 3.66
221 222 1.206132 ACACCGTTAGATTCGCCATGA 59.794 47.619 0.00 0.00 0.00 3.07
222 223 2.276201 CACCGTTAGATTCGCCATGAA 58.724 47.619 0.00 0.00 41.81 2.57
223 224 2.675844 CACCGTTAGATTCGCCATGAAA 59.324 45.455 0.00 0.00 40.71 2.69
224 225 3.312421 CACCGTTAGATTCGCCATGAAAT 59.688 43.478 0.00 0.00 40.71 2.17
225 226 4.509970 CACCGTTAGATTCGCCATGAAATA 59.490 41.667 0.00 0.00 40.71 1.40
226 227 5.179368 CACCGTTAGATTCGCCATGAAATAT 59.821 40.000 0.00 0.00 40.71 1.28
227 228 6.367695 CACCGTTAGATTCGCCATGAAATATA 59.632 38.462 0.00 0.00 40.71 0.86
228 229 7.064609 CACCGTTAGATTCGCCATGAAATATAT 59.935 37.037 0.00 0.00 40.71 0.86
229 230 7.606456 ACCGTTAGATTCGCCATGAAATATATT 59.394 33.333 0.00 0.00 40.71 1.28
230 231 8.450964 CCGTTAGATTCGCCATGAAATATATTT 58.549 33.333 10.51 10.51 40.71 1.40
231 232 9.825972 CGTTAGATTCGCCATGAAATATATTTT 57.174 29.630 11.92 0.00 40.71 1.82
239 240 9.241919 TCGCCATGAAATATATTTTCATATGGT 57.758 29.630 25.55 4.39 44.60 3.55
255 256 8.938801 TTCATATGGTATATCTTTGGCATTGT 57.061 30.769 2.13 0.00 0.00 2.71
257 258 9.671279 TCATATGGTATATCTTTGGCATTGTAG 57.329 33.333 2.13 0.00 0.00 2.74
258 259 9.671279 CATATGGTATATCTTTGGCATTGTAGA 57.329 33.333 0.00 0.00 0.00 2.59
259 260 7.986085 ATGGTATATCTTTGGCATTGTAGAC 57.014 36.000 0.00 0.00 0.00 2.59
260 261 6.894682 TGGTATATCTTTGGCATTGTAGACA 58.105 36.000 0.00 0.00 0.00 3.41
261 262 7.517320 TGGTATATCTTTGGCATTGTAGACAT 58.483 34.615 0.00 0.00 0.00 3.06
262 263 8.655901 TGGTATATCTTTGGCATTGTAGACATA 58.344 33.333 0.00 0.00 0.00 2.29
263 264 9.672673 GGTATATCTTTGGCATTGTAGACATAT 57.327 33.333 0.00 0.00 0.00 1.78
302 303 1.985473 TGGTGAAAGCATGTGAAGCT 58.015 45.000 0.00 0.00 40.88 3.74
309 310 2.574006 AGCATGTGAAGCTTCCTCAA 57.426 45.000 23.42 6.94 39.87 3.02
310 311 2.867624 AGCATGTGAAGCTTCCTCAAA 58.132 42.857 23.42 1.16 39.87 2.69
311 312 2.818432 AGCATGTGAAGCTTCCTCAAAG 59.182 45.455 23.42 17.62 39.87 2.77
327 328 7.572523 TCCTCAAAGCATTGTATATCTTTGG 57.427 36.000 11.95 5.06 43.16 3.28
328 329 6.039717 TCCTCAAAGCATTGTATATCTTTGGC 59.960 38.462 11.95 0.00 43.16 4.52
329 330 6.183360 CCTCAAAGCATTGTATATCTTTGGCA 60.183 38.462 11.95 0.00 43.16 4.92
330 331 6.798482 TCAAAGCATTGTATATCTTTGGCAG 58.202 36.000 11.95 0.00 43.16 4.85
331 332 6.602803 TCAAAGCATTGTATATCTTTGGCAGA 59.397 34.615 11.95 0.00 43.16 4.26
332 333 6.630444 AAGCATTGTATATCTTTGGCAGAG 57.370 37.500 0.00 0.00 33.87 3.35
333 334 5.688807 AGCATTGTATATCTTTGGCAGAGT 58.311 37.500 4.83 0.00 33.87 3.24
334 335 6.125029 AGCATTGTATATCTTTGGCAGAGTT 58.875 36.000 4.83 0.00 33.87 3.01
335 336 6.604795 AGCATTGTATATCTTTGGCAGAGTTT 59.395 34.615 4.83 0.00 33.87 2.66
336 337 7.123247 AGCATTGTATATCTTTGGCAGAGTTTT 59.877 33.333 4.83 0.00 33.87 2.43
337 338 7.761249 GCATTGTATATCTTTGGCAGAGTTTTT 59.239 33.333 4.83 0.00 33.87 1.94
356 357 3.902881 TTTTTGGCGGGAAATGCATAT 57.097 38.095 0.00 0.00 0.00 1.78
357 358 3.902881 TTTTGGCGGGAAATGCATATT 57.097 38.095 0.00 0.00 0.00 1.28
358 359 5.344743 TTTTTGGCGGGAAATGCATATTA 57.655 34.783 0.00 0.00 0.00 0.98
359 360 4.582701 TTTGGCGGGAAATGCATATTAG 57.417 40.909 0.00 0.00 0.00 1.73
360 361 3.500448 TGGCGGGAAATGCATATTAGA 57.500 42.857 0.00 0.00 0.00 2.10
361 362 4.032960 TGGCGGGAAATGCATATTAGAT 57.967 40.909 0.00 0.00 0.00 1.98
362 363 3.758023 TGGCGGGAAATGCATATTAGATG 59.242 43.478 0.00 0.00 0.00 2.90
363 364 3.758554 GGCGGGAAATGCATATTAGATGT 59.241 43.478 0.00 0.00 0.00 3.06
364 365 4.142600 GGCGGGAAATGCATATTAGATGTC 60.143 45.833 0.00 0.00 0.00 3.06
365 366 4.455533 GCGGGAAATGCATATTAGATGTCA 59.544 41.667 0.00 0.00 0.00 3.58
366 367 5.048782 GCGGGAAATGCATATTAGATGTCAA 60.049 40.000 0.00 0.00 0.00 3.18
367 368 6.373779 CGGGAAATGCATATTAGATGTCAAC 58.626 40.000 0.00 0.00 0.00 3.18
368 369 6.568462 CGGGAAATGCATATTAGATGTCAACC 60.568 42.308 0.00 0.00 0.00 3.77
369 370 6.265196 GGGAAATGCATATTAGATGTCAACCA 59.735 38.462 0.00 0.00 0.00 3.67
370 371 7.201902 GGGAAATGCATATTAGATGTCAACCAA 60.202 37.037 0.00 0.00 0.00 3.67
371 372 8.362639 GGAAATGCATATTAGATGTCAACCAAT 58.637 33.333 0.00 0.00 0.00 3.16
375 376 8.922931 TGCATATTAGATGTCAACCAATATGT 57.077 30.769 16.74 0.00 39.82 2.29
376 377 9.353431 TGCATATTAGATGTCAACCAATATGTT 57.647 29.630 16.74 0.00 39.82 2.71
377 378 9.616634 GCATATTAGATGTCAACCAATATGTTG 57.383 33.333 16.74 0.00 45.51 3.33
392 393 7.672983 CAATATGTTGGGGTGATAGTGATAC 57.327 40.000 0.00 0.00 0.00 2.24
393 394 3.812156 TGTTGGGGTGATAGTGATACG 57.188 47.619 0.00 0.00 0.00 3.06
394 395 3.101437 TGTTGGGGTGATAGTGATACGT 58.899 45.455 0.00 0.00 0.00 3.57
395 396 3.516300 TGTTGGGGTGATAGTGATACGTT 59.484 43.478 0.00 0.00 0.00 3.99
396 397 4.117685 GTTGGGGTGATAGTGATACGTTC 58.882 47.826 0.00 0.00 0.00 3.95
397 398 2.696707 TGGGGTGATAGTGATACGTTCC 59.303 50.000 0.00 0.00 0.00 3.62
398 399 2.696707 GGGGTGATAGTGATACGTTCCA 59.303 50.000 0.00 0.00 0.00 3.53
399 400 3.492137 GGGGTGATAGTGATACGTTCCAC 60.492 52.174 10.79 10.79 0.00 4.02
400 401 3.383825 GGGTGATAGTGATACGTTCCACT 59.616 47.826 20.95 20.95 44.81 4.00
401 402 4.581824 GGGTGATAGTGATACGTTCCACTA 59.418 45.833 23.05 23.05 46.15 2.74
407 408 5.440234 AGTGATACGTTCCACTATGCTAG 57.560 43.478 17.37 0.00 41.38 3.42
408 409 4.888239 AGTGATACGTTCCACTATGCTAGT 59.112 41.667 17.37 0.00 41.38 2.57
409 410 5.360144 AGTGATACGTTCCACTATGCTAGTT 59.640 40.000 17.37 0.00 41.38 2.24
410 411 5.459107 GTGATACGTTCCACTATGCTAGTTG 59.541 44.000 11.31 0.00 36.76 3.16
411 412 5.358725 TGATACGTTCCACTATGCTAGTTGA 59.641 40.000 0.00 0.00 36.76 3.18
412 413 4.530710 ACGTTCCACTATGCTAGTTGAA 57.469 40.909 0.00 6.04 37.89 2.69
413 414 4.890088 ACGTTCCACTATGCTAGTTGAAA 58.110 39.130 9.72 0.00 40.66 2.69
414 415 5.302360 ACGTTCCACTATGCTAGTTGAAAA 58.698 37.500 9.72 0.00 40.66 2.29
415 416 5.938125 ACGTTCCACTATGCTAGTTGAAAAT 59.062 36.000 9.72 2.52 40.66 1.82
416 417 6.430000 ACGTTCCACTATGCTAGTTGAAAATT 59.570 34.615 9.72 0.00 40.66 1.82
417 418 7.040686 ACGTTCCACTATGCTAGTTGAAAATTT 60.041 33.333 9.72 0.00 40.66 1.82
418 419 8.447833 CGTTCCACTATGCTAGTTGAAAATTTA 58.552 33.333 9.72 0.00 40.66 1.40
444 445 9.716507 ATTTATAATTTCGATTATATGCGTGCC 57.283 29.630 0.53 0.00 31.36 5.01
445 446 3.722555 ATTTCGATTATATGCGTGCCG 57.277 42.857 0.00 0.00 0.00 5.69
446 447 2.143008 TTCGATTATATGCGTGCCGT 57.857 45.000 0.00 0.00 0.00 5.68
447 448 1.414378 TCGATTATATGCGTGCCGTG 58.586 50.000 0.00 0.00 0.00 4.94
448 449 1.001158 TCGATTATATGCGTGCCGTGA 60.001 47.619 0.00 0.00 0.00 4.35
449 450 1.124297 CGATTATATGCGTGCCGTGAC 59.876 52.381 0.00 0.00 0.00 3.67
450 451 2.404215 GATTATATGCGTGCCGTGACT 58.596 47.619 0.00 0.00 0.00 3.41
451 452 2.303163 TTATATGCGTGCCGTGACTT 57.697 45.000 0.00 0.00 0.00 3.01
452 453 1.847818 TATATGCGTGCCGTGACTTC 58.152 50.000 0.00 0.00 0.00 3.01
453 454 0.810031 ATATGCGTGCCGTGACTTCC 60.810 55.000 0.00 0.00 0.00 3.46
454 455 2.161078 TATGCGTGCCGTGACTTCCA 62.161 55.000 0.00 0.00 0.00 3.53
455 456 2.970324 GCGTGCCGTGACTTCCAA 60.970 61.111 0.00 0.00 0.00 3.53
456 457 2.954753 GCGTGCCGTGACTTCCAAG 61.955 63.158 0.00 0.00 0.00 3.61
457 458 2.946762 GTGCCGTGACTTCCAAGC 59.053 61.111 0.00 0.00 0.00 4.01
458 459 2.281484 TGCCGTGACTTCCAAGCC 60.281 61.111 0.00 0.00 0.00 4.35
459 460 2.281484 GCCGTGACTTCCAAGCCA 60.281 61.111 0.00 0.00 0.00 4.75
460 461 2.617274 GCCGTGACTTCCAAGCCAC 61.617 63.158 0.00 0.00 36.25 5.01
462 463 2.946762 GTGACTTCCAAGCCACGC 59.053 61.111 0.00 0.00 29.94 5.34
463 464 1.598130 GTGACTTCCAAGCCACGCT 60.598 57.895 0.00 0.00 42.56 5.07
464 465 1.597854 TGACTTCCAAGCCACGCTG 60.598 57.895 0.00 0.00 39.62 5.18
465 466 1.301716 GACTTCCAAGCCACGCTGA 60.302 57.895 0.00 0.00 39.62 4.26
466 467 1.294659 GACTTCCAAGCCACGCTGAG 61.295 60.000 0.00 0.00 39.62 3.35
467 468 1.004560 CTTCCAAGCCACGCTGAGA 60.005 57.895 0.00 0.00 39.62 3.27
468 469 0.603707 CTTCCAAGCCACGCTGAGAA 60.604 55.000 0.00 0.00 39.62 2.87
469 470 0.036732 TTCCAAGCCACGCTGAGAAT 59.963 50.000 0.00 0.00 39.62 2.40
470 471 0.674581 TCCAAGCCACGCTGAGAATG 60.675 55.000 0.00 0.00 39.62 2.67
471 472 0.674581 CCAAGCCACGCTGAGAATGA 60.675 55.000 0.00 0.00 39.62 2.57
472 473 0.445436 CAAGCCACGCTGAGAATGAC 59.555 55.000 0.00 0.00 39.62 3.06
473 474 0.035317 AAGCCACGCTGAGAATGACA 59.965 50.000 0.00 0.00 39.62 3.58
474 475 0.671781 AGCCACGCTGAGAATGACAC 60.672 55.000 0.00 0.00 37.57 3.67
475 476 0.950555 GCCACGCTGAGAATGACACA 60.951 55.000 0.00 0.00 0.00 3.72
476 477 1.730501 CCACGCTGAGAATGACACAT 58.269 50.000 0.00 0.00 0.00 3.21
477 478 1.395954 CCACGCTGAGAATGACACATG 59.604 52.381 0.00 0.00 0.00 3.21
478 479 1.081892 ACGCTGAGAATGACACATGC 58.918 50.000 0.00 0.00 0.00 4.06
479 480 1.081094 CGCTGAGAATGACACATGCA 58.919 50.000 0.00 0.00 0.00 3.96
480 481 1.669265 CGCTGAGAATGACACATGCAT 59.331 47.619 0.00 0.00 0.00 3.96
481 482 2.867975 CGCTGAGAATGACACATGCATA 59.132 45.455 0.00 0.00 0.00 3.14
482 483 3.302935 CGCTGAGAATGACACATGCATAC 60.303 47.826 0.00 0.00 0.00 2.39
483 484 3.624410 GCTGAGAATGACACATGCATACA 59.376 43.478 0.00 0.00 0.00 2.29
484 485 4.275196 GCTGAGAATGACACATGCATACAT 59.725 41.667 0.00 0.48 36.79 2.29
485 486 5.560375 GCTGAGAATGACACATGCATACATC 60.560 44.000 0.00 0.00 32.87 3.06
486 487 5.430007 TGAGAATGACACATGCATACATCA 58.570 37.500 0.00 3.51 32.87 3.07
487 488 6.059484 TGAGAATGACACATGCATACATCAT 58.941 36.000 0.00 5.91 32.87 2.45
488 489 7.218614 TGAGAATGACACATGCATACATCATA 58.781 34.615 15.37 2.41 32.87 2.15
489 490 7.172019 TGAGAATGACACATGCATACATCATAC 59.828 37.037 15.37 11.68 32.87 2.39
490 491 6.993902 AGAATGACACATGCATACATCATACA 59.006 34.615 15.37 3.66 32.87 2.29
491 492 7.499895 AGAATGACACATGCATACATCATACAA 59.500 33.333 15.37 0.00 32.87 2.41
492 493 6.362210 TGACACATGCATACATCATACAAC 57.638 37.500 0.00 0.00 32.87 3.32
493 494 6.114767 TGACACATGCATACATCATACAACT 58.885 36.000 0.00 0.00 32.87 3.16
494 495 6.598850 TGACACATGCATACATCATACAACTT 59.401 34.615 0.00 0.00 32.87 2.66
495 496 6.788243 ACACATGCATACATCATACAACTTG 58.212 36.000 0.00 0.00 32.87 3.16
496 497 6.375174 ACACATGCATACATCATACAACTTGT 59.625 34.615 0.00 0.00 32.87 3.16
497 498 7.552330 ACACATGCATACATCATACAACTTGTA 59.448 33.333 0.00 4.08 33.78 2.41
498 499 8.397148 CACATGCATACATCATACAACTTGTAA 58.603 33.333 0.00 0.00 33.26 2.41
499 500 9.123902 ACATGCATACATCATACAACTTGTAAT 57.876 29.630 0.00 0.00 33.26 1.89
500 501 9.955208 CATGCATACATCATACAACTTGTAATT 57.045 29.630 0.00 0.00 33.26 1.40
503 504 9.450807 GCATACATCATACAACTTGTAATTTCC 57.549 33.333 5.73 0.00 36.31 3.13
514 515 8.960591 ACAACTTGTAATTTCCTATTCTCATGG 58.039 33.333 0.00 0.00 0.00 3.66
515 516 8.408601 CAACTTGTAATTTCCTATTCTCATGGG 58.591 37.037 0.00 0.00 32.02 4.00
516 517 7.062957 ACTTGTAATTTCCTATTCTCATGGGG 58.937 38.462 0.00 0.00 31.66 4.96
517 518 5.952387 TGTAATTTCCTATTCTCATGGGGG 58.048 41.667 0.00 0.00 31.66 5.40
518 519 3.532641 ATTTCCTATTCTCATGGGGGC 57.467 47.619 0.00 0.00 31.66 5.80
519 520 2.212752 TTCCTATTCTCATGGGGGCT 57.787 50.000 0.00 0.00 31.66 5.19
520 521 3.360740 TTCCTATTCTCATGGGGGCTA 57.639 47.619 0.00 0.00 31.66 3.93
521 522 3.585077 TCCTATTCTCATGGGGGCTAT 57.415 47.619 0.00 0.00 31.66 2.97
522 523 4.710197 TCCTATTCTCATGGGGGCTATA 57.290 45.455 0.00 0.00 31.66 1.31
523 524 5.036470 TCCTATTCTCATGGGGGCTATAA 57.964 43.478 0.00 0.00 31.66 0.98
524 525 5.420455 TCCTATTCTCATGGGGGCTATAAA 58.580 41.667 0.00 0.00 31.66 1.40
525 526 5.855040 TCCTATTCTCATGGGGGCTATAAAA 59.145 40.000 0.00 0.00 31.66 1.52
526 527 6.508920 TCCTATTCTCATGGGGGCTATAAAAT 59.491 38.462 0.00 0.00 31.66 1.82
527 528 7.686790 TCCTATTCTCATGGGGGCTATAAAATA 59.313 37.037 0.00 0.00 31.66 1.40
528 529 7.775561 CCTATTCTCATGGGGGCTATAAAATAC 59.224 40.741 0.00 0.00 0.00 1.89
529 530 6.780198 TTCTCATGGGGGCTATAAAATACT 57.220 37.500 0.00 0.00 0.00 2.12
530 531 7.881912 TTCTCATGGGGGCTATAAAATACTA 57.118 36.000 0.00 0.00 0.00 1.82
531 532 7.253905 TCTCATGGGGGCTATAAAATACTAC 57.746 40.000 0.00 0.00 0.00 2.73
532 533 7.023120 TCTCATGGGGGCTATAAAATACTACT 58.977 38.462 0.00 0.00 0.00 2.57
533 534 7.180408 TCTCATGGGGGCTATAAAATACTACTC 59.820 40.741 0.00 0.00 0.00 2.59
534 535 6.214819 TCATGGGGGCTATAAAATACTACTCC 59.785 42.308 0.00 0.00 0.00 3.85
535 536 4.848086 TGGGGGCTATAAAATACTACTCCC 59.152 45.833 0.00 0.00 0.00 4.30
536 537 5.099378 GGGGGCTATAAAATACTACTCCCT 58.901 45.833 0.00 0.00 0.00 4.20
537 538 5.189342 GGGGGCTATAAAATACTACTCCCTC 59.811 48.000 0.00 0.00 0.00 4.30
538 539 5.189342 GGGGCTATAAAATACTACTCCCTCC 59.811 48.000 0.00 0.00 0.00 4.30
539 540 5.105432 GGGCTATAAAATACTACTCCCTCCG 60.105 48.000 0.00 0.00 0.00 4.63
540 541 5.479724 GGCTATAAAATACTACTCCCTCCGT 59.520 44.000 0.00 0.00 0.00 4.69
541 542 6.350027 GGCTATAAAATACTACTCCCTCCGTC 60.350 46.154 0.00 0.00 0.00 4.79
542 543 6.350027 GCTATAAAATACTACTCCCTCCGTCC 60.350 46.154 0.00 0.00 0.00 4.79
543 544 2.378378 AATACTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
544 545 1.229131 ATACTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
545 546 1.229131 TACTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
546 547 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
547 548 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
548 549 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
549 550 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
550 551 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
551 552 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
552 553 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
553 554 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
554 555 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
555 556 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
557 558 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
558 559 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
559 560 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
560 561 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
561 562 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
586 587 9.919348 TTTAACACTACACTAATGTCGAAAAAC 57.081 29.630 0.00 0.00 40.48 2.43
587 588 7.542534 AACACTACACTAATGTCGAAAAACA 57.457 32.000 0.00 0.00 40.48 2.83
588 589 7.724305 ACACTACACTAATGTCGAAAAACAT 57.276 32.000 0.00 0.00 41.60 2.71
589 590 7.793902 ACACTACACTAATGTCGAAAAACATC 58.206 34.615 0.00 0.00 38.92 3.06
590 591 7.656137 ACACTACACTAATGTCGAAAAACATCT 59.344 33.333 0.00 0.00 38.92 2.90
591 592 8.495949 CACTACACTAATGTCGAAAAACATCTT 58.504 33.333 0.00 0.00 38.92 2.40
592 593 9.701098 ACTACACTAATGTCGAAAAACATCTTA 57.299 29.630 0.00 0.00 38.92 2.10
593 594 9.953825 CTACACTAATGTCGAAAAACATCTTAC 57.046 33.333 0.00 0.00 38.92 2.34
594 595 8.373048 ACACTAATGTCGAAAAACATCTTACA 57.627 30.769 0.00 0.00 38.92 2.41
595 596 8.999431 ACACTAATGTCGAAAAACATCTTACAT 58.001 29.630 0.00 0.00 38.92 2.29
596 597 9.825972 CACTAATGTCGAAAAACATCTTACATT 57.174 29.630 0.00 0.00 38.92 2.71
600 601 9.787532 AATGTCGAAAAACATCTTACATTATGG 57.212 29.630 0.00 0.00 38.92 2.74
601 602 7.757526 TGTCGAAAAACATCTTACATTATGGG 58.242 34.615 0.00 0.00 0.00 4.00
602 603 7.608376 TGTCGAAAAACATCTTACATTATGGGA 59.392 33.333 0.00 0.00 0.00 4.37
603 604 7.908601 GTCGAAAAACATCTTACATTATGGGAC 59.091 37.037 0.00 0.00 0.00 4.46
604 605 6.905076 CGAAAAACATCTTACATTATGGGACG 59.095 38.462 0.00 0.00 0.00 4.79
605 606 6.693315 AAAACATCTTACATTATGGGACGG 57.307 37.500 0.00 0.00 0.00 4.79
606 607 5.623956 AACATCTTACATTATGGGACGGA 57.376 39.130 0.00 0.00 0.00 4.69
611 612 0.759346 ACATTATGGGACGGAGGAGC 59.241 55.000 0.00 0.00 0.00 4.70
781 783 2.599597 GCCCATCTGTCAGCCCAT 59.400 61.111 0.00 0.00 0.00 4.00
1263 1288 4.591498 TCTGTACAGTGTTAGGGTTCATGT 59.409 41.667 21.99 0.00 0.00 3.21
1363 1390 7.506261 ACCAGTGTTTGTTGGTTATTATGGTTA 59.494 33.333 0.00 0.00 45.16 2.85
1872 1935 0.690762 TGGAAGGGTACAGGACAAGC 59.309 55.000 0.00 0.00 0.00 4.01
1889 1952 4.526970 ACAAGCAGAAGTTTGAGAAGGAA 58.473 39.130 0.00 0.00 38.10 3.36
1893 1956 5.136105 AGCAGAAGTTTGAGAAGGAATTGT 58.864 37.500 0.00 0.00 0.00 2.71
2185 2272 5.748402 AGCTGATATCATCAAGAACACCAA 58.252 37.500 5.72 0.00 39.11 3.67
2282 2369 2.371841 TGAGCTGCTGAAAGAAGGGTAA 59.628 45.455 7.01 0.00 41.26 2.85
2970 3118 2.625737 CGACTCTCCGACAAGGTACTA 58.374 52.381 0.00 0.00 38.49 1.82
3255 3404 9.904198 TTGTGAGATTTGGATGTAATCTATGAA 57.096 29.630 0.00 0.00 44.71 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.941664 GTACTGCGAGTACTTTCACTTTATATA 57.058 33.333 15.13 0.00 45.70 0.86
10 11 8.853469 GTACTGCGAGTACTTTCACTTTATAT 57.147 34.615 15.13 0.00 45.70 0.86
24 25 6.317893 TGATATGTTGAGAAGTACTGCGAGTA 59.682 38.462 0.00 0.00 0.00 2.59
25 26 3.944055 ATGTTGAGAAGTACTGCGAGT 57.056 42.857 0.00 0.00 0.00 4.18
26 27 5.582550 TGATATGTTGAGAAGTACTGCGAG 58.417 41.667 0.00 0.00 0.00 5.03
27 28 5.125578 ACTGATATGTTGAGAAGTACTGCGA 59.874 40.000 0.00 0.00 0.00 5.10
28 29 5.344066 ACTGATATGTTGAGAAGTACTGCG 58.656 41.667 0.00 0.00 0.00 5.18
46 47 8.466798 GCACTATAATTACCAAAACCAACTGAT 58.533 33.333 0.00 0.00 0.00 2.90
47 48 7.094118 GGCACTATAATTACCAAAACCAACTGA 60.094 37.037 0.00 0.00 0.00 3.41
48 49 7.033185 GGCACTATAATTACCAAAACCAACTG 58.967 38.462 0.00 0.00 0.00 3.16
49 50 6.153851 GGGCACTATAATTACCAAAACCAACT 59.846 38.462 0.00 0.00 0.00 3.16
50 51 6.071278 TGGGCACTATAATTACCAAAACCAAC 60.071 38.462 0.00 0.00 0.00 3.77
51 52 6.017192 TGGGCACTATAATTACCAAAACCAA 58.983 36.000 0.00 0.00 0.00 3.67
52 53 5.580998 TGGGCACTATAATTACCAAAACCA 58.419 37.500 0.00 0.00 0.00 3.67
53 54 6.532988 TTGGGCACTATAATTACCAAAACC 57.467 37.500 0.00 0.00 35.27 3.27
54 55 7.608153 ACTTTGGGCACTATAATTACCAAAAC 58.392 34.615 13.60 0.00 44.48 2.43
55 56 7.672239 AGACTTTGGGCACTATAATTACCAAAA 59.328 33.333 13.60 4.94 44.48 2.44
56 57 7.179269 AGACTTTGGGCACTATAATTACCAAA 58.821 34.615 12.56 12.56 43.41 3.28
57 58 6.727394 AGACTTTGGGCACTATAATTACCAA 58.273 36.000 0.00 0.00 36.30 3.67
58 59 6.321821 AGACTTTGGGCACTATAATTACCA 57.678 37.500 0.00 0.00 0.00 3.25
59 60 6.826741 TGAAGACTTTGGGCACTATAATTACC 59.173 38.462 0.00 0.00 0.00 2.85
60 61 7.467403 GCTGAAGACTTTGGGCACTATAATTAC 60.467 40.741 0.00 0.00 0.00 1.89
61 62 6.542370 GCTGAAGACTTTGGGCACTATAATTA 59.458 38.462 0.00 0.00 0.00 1.40
62 63 5.358160 GCTGAAGACTTTGGGCACTATAATT 59.642 40.000 0.00 0.00 0.00 1.40
63 64 4.884164 GCTGAAGACTTTGGGCACTATAAT 59.116 41.667 0.00 0.00 0.00 1.28
64 65 4.019321 AGCTGAAGACTTTGGGCACTATAA 60.019 41.667 9.49 0.00 0.00 0.98
65 66 3.519510 AGCTGAAGACTTTGGGCACTATA 59.480 43.478 9.49 0.00 0.00 1.31
66 67 2.307098 AGCTGAAGACTTTGGGCACTAT 59.693 45.455 9.49 0.00 0.00 2.12
67 68 1.699634 AGCTGAAGACTTTGGGCACTA 59.300 47.619 9.49 0.00 0.00 2.74
68 69 0.475906 AGCTGAAGACTTTGGGCACT 59.524 50.000 9.49 0.00 0.00 4.40
69 70 1.268079 GAAGCTGAAGACTTTGGGCAC 59.732 52.381 0.00 0.00 0.00 5.01
70 71 1.143684 AGAAGCTGAAGACTTTGGGCA 59.856 47.619 0.00 0.00 0.00 5.36
71 72 1.902938 AGAAGCTGAAGACTTTGGGC 58.097 50.000 0.00 0.00 0.00 5.36
72 73 5.707298 TGATTTAGAAGCTGAAGACTTTGGG 59.293 40.000 0.00 0.00 0.00 4.12
73 74 6.808008 TGATTTAGAAGCTGAAGACTTTGG 57.192 37.500 0.00 0.00 0.00 3.28
74 75 7.120285 TCCATGATTTAGAAGCTGAAGACTTTG 59.880 37.037 0.00 0.00 0.00 2.77
75 76 7.170965 TCCATGATTTAGAAGCTGAAGACTTT 58.829 34.615 0.00 0.00 0.00 2.66
76 77 6.715280 TCCATGATTTAGAAGCTGAAGACTT 58.285 36.000 0.00 0.00 0.00 3.01
77 78 6.305272 TCCATGATTTAGAAGCTGAAGACT 57.695 37.500 0.00 0.00 0.00 3.24
78 79 7.565323 AATCCATGATTTAGAAGCTGAAGAC 57.435 36.000 0.00 0.00 0.00 3.01
79 80 7.830697 TGAAATCCATGATTTAGAAGCTGAAGA 59.169 33.333 0.00 0.00 41.56 2.87
80 81 7.993101 TGAAATCCATGATTTAGAAGCTGAAG 58.007 34.615 0.00 0.00 41.56 3.02
81 82 7.067859 CCTGAAATCCATGATTTAGAAGCTGAA 59.932 37.037 0.00 0.00 41.56 3.02
82 83 6.544931 CCTGAAATCCATGATTTAGAAGCTGA 59.455 38.462 0.00 0.00 41.56 4.26
83 84 6.320672 ACCTGAAATCCATGATTTAGAAGCTG 59.679 38.462 0.00 0.00 41.56 4.24
84 85 6.430007 ACCTGAAATCCATGATTTAGAAGCT 58.570 36.000 0.00 0.00 41.56 3.74
85 86 6.705863 ACCTGAAATCCATGATTTAGAAGC 57.294 37.500 0.00 0.00 41.56 3.86
86 87 7.123247 ACCAACCTGAAATCCATGATTTAGAAG 59.877 37.037 0.00 2.11 41.56 2.85
87 88 6.953520 ACCAACCTGAAATCCATGATTTAGAA 59.046 34.615 0.00 0.00 41.56 2.10
88 89 6.493166 ACCAACCTGAAATCCATGATTTAGA 58.507 36.000 0.00 0.00 41.56 2.10
89 90 6.780457 ACCAACCTGAAATCCATGATTTAG 57.220 37.500 0.00 0.00 41.56 1.85
90 91 6.321181 GCTACCAACCTGAAATCCATGATTTA 59.679 38.462 0.00 0.00 41.56 1.40
91 92 5.127682 GCTACCAACCTGAAATCCATGATTT 59.872 40.000 1.87 1.87 43.77 2.17
92 93 4.646492 GCTACCAACCTGAAATCCATGATT 59.354 41.667 0.00 0.00 33.25 2.57
93 94 4.079558 AGCTACCAACCTGAAATCCATGAT 60.080 41.667 0.00 0.00 0.00 2.45
94 95 3.266772 AGCTACCAACCTGAAATCCATGA 59.733 43.478 0.00 0.00 0.00 3.07
95 96 3.624777 AGCTACCAACCTGAAATCCATG 58.375 45.455 0.00 0.00 0.00 3.66
96 97 4.322057 AAGCTACCAACCTGAAATCCAT 57.678 40.909 0.00 0.00 0.00 3.41
97 98 3.806949 AAGCTACCAACCTGAAATCCA 57.193 42.857 0.00 0.00 0.00 3.41
98 99 5.652452 ACAATAAGCTACCAACCTGAAATCC 59.348 40.000 0.00 0.00 0.00 3.01
99 100 6.599638 AGACAATAAGCTACCAACCTGAAATC 59.400 38.462 0.00 0.00 0.00 2.17
100 101 6.485171 AGACAATAAGCTACCAACCTGAAAT 58.515 36.000 0.00 0.00 0.00 2.17
101 102 5.876357 AGACAATAAGCTACCAACCTGAAA 58.124 37.500 0.00 0.00 0.00 2.69
102 103 5.499004 AGACAATAAGCTACCAACCTGAA 57.501 39.130 0.00 0.00 0.00 3.02
103 104 5.499004 AAGACAATAAGCTACCAACCTGA 57.501 39.130 0.00 0.00 0.00 3.86
104 105 5.294552 GCTAAGACAATAAGCTACCAACCTG 59.705 44.000 0.00 0.00 33.40 4.00
105 106 5.429130 GCTAAGACAATAAGCTACCAACCT 58.571 41.667 0.00 0.00 33.40 3.50
106 107 4.270325 CGCTAAGACAATAAGCTACCAACC 59.730 45.833 0.00 0.00 34.03 3.77
107 108 4.868734 ACGCTAAGACAATAAGCTACCAAC 59.131 41.667 0.00 0.00 34.03 3.77
108 109 5.080969 ACGCTAAGACAATAAGCTACCAA 57.919 39.130 0.00 0.00 34.03 3.67
109 110 4.730949 ACGCTAAGACAATAAGCTACCA 57.269 40.909 0.00 0.00 34.03 3.25
110 111 8.295288 TCTAATACGCTAAGACAATAAGCTACC 58.705 37.037 0.00 0.00 34.03 3.18
111 112 9.843334 ATCTAATACGCTAAGACAATAAGCTAC 57.157 33.333 0.00 0.00 34.03 3.58
118 119 9.036980 AGGGAATATCTAATACGCTAAGACAAT 57.963 33.333 0.00 0.00 0.00 2.71
119 120 8.418597 AGGGAATATCTAATACGCTAAGACAA 57.581 34.615 0.00 0.00 0.00 3.18
120 121 7.889073 AGAGGGAATATCTAATACGCTAAGACA 59.111 37.037 0.00 0.00 0.00 3.41
121 122 8.185505 CAGAGGGAATATCTAATACGCTAAGAC 58.814 40.741 0.00 0.00 0.00 3.01
122 123 7.889073 ACAGAGGGAATATCTAATACGCTAAGA 59.111 37.037 0.00 0.00 0.00 2.10
123 124 8.057536 ACAGAGGGAATATCTAATACGCTAAG 57.942 38.462 0.00 0.00 0.00 2.18
124 125 8.418597 AACAGAGGGAATATCTAATACGCTAA 57.581 34.615 0.00 0.00 0.00 3.09
125 126 8.418597 AAACAGAGGGAATATCTAATACGCTA 57.581 34.615 0.00 0.00 0.00 4.26
126 127 6.919775 AACAGAGGGAATATCTAATACGCT 57.080 37.500 0.00 0.00 0.00 5.07
127 128 7.152645 TGAAACAGAGGGAATATCTAATACGC 58.847 38.462 0.00 0.00 0.00 4.42
128 129 9.542462 TTTGAAACAGAGGGAATATCTAATACG 57.458 33.333 0.00 0.00 0.00 3.06
138 139 9.178758 GACACTATATTTTGAAACAGAGGGAAT 57.821 33.333 0.00 0.00 0.00 3.01
139 140 8.383175 AGACACTATATTTTGAAACAGAGGGAA 58.617 33.333 0.00 0.00 0.00 3.97
140 141 7.918076 AGACACTATATTTTGAAACAGAGGGA 58.082 34.615 0.00 0.00 0.00 4.20
141 142 9.838339 ATAGACACTATATTTTGAAACAGAGGG 57.162 33.333 0.00 0.00 0.00 4.30
183 184 5.122711 ACGGTGTTAGTTTGGTATTGCATAC 59.877 40.000 0.00 0.00 35.00 2.39
184 185 5.247084 ACGGTGTTAGTTTGGTATTGCATA 58.753 37.500 0.00 0.00 0.00 3.14
185 186 4.076394 ACGGTGTTAGTTTGGTATTGCAT 58.924 39.130 0.00 0.00 0.00 3.96
186 187 3.478509 ACGGTGTTAGTTTGGTATTGCA 58.521 40.909 0.00 0.00 0.00 4.08
187 188 4.492791 AACGGTGTTAGTTTGGTATTGC 57.507 40.909 0.00 0.00 0.00 3.56
188 189 7.605410 ATCTAACGGTGTTAGTTTGGTATTG 57.395 36.000 14.43 0.00 33.42 1.90
189 190 7.063780 CGAATCTAACGGTGTTAGTTTGGTATT 59.936 37.037 14.44 7.76 33.42 1.89
190 191 6.532657 CGAATCTAACGGTGTTAGTTTGGTAT 59.467 38.462 14.44 0.99 33.42 2.73
191 192 5.863397 CGAATCTAACGGTGTTAGTTTGGTA 59.137 40.000 14.44 0.00 33.42 3.25
192 193 4.687483 CGAATCTAACGGTGTTAGTTTGGT 59.313 41.667 14.44 1.16 33.42 3.67
193 194 4.435121 GCGAATCTAACGGTGTTAGTTTGG 60.435 45.833 14.44 13.97 33.42 3.28
194 195 4.435121 GGCGAATCTAACGGTGTTAGTTTG 60.435 45.833 14.44 12.56 33.42 2.93
195 196 3.681417 GGCGAATCTAACGGTGTTAGTTT 59.319 43.478 14.43 12.64 33.42 2.66
196 197 3.256558 GGCGAATCTAACGGTGTTAGTT 58.743 45.455 14.43 9.33 35.75 2.24
197 198 2.231964 TGGCGAATCTAACGGTGTTAGT 59.768 45.455 14.43 0.00 0.00 2.24
198 199 2.883574 TGGCGAATCTAACGGTGTTAG 58.116 47.619 9.83 9.83 0.00 2.34
199 200 3.119065 TCATGGCGAATCTAACGGTGTTA 60.119 43.478 0.00 0.00 0.00 2.41
200 201 2.006888 CATGGCGAATCTAACGGTGTT 58.993 47.619 0.00 0.00 0.00 3.32
201 202 1.206132 TCATGGCGAATCTAACGGTGT 59.794 47.619 0.00 0.00 0.00 4.16
202 203 1.934589 TCATGGCGAATCTAACGGTG 58.065 50.000 0.00 0.00 0.00 4.94
203 204 2.684001 TTCATGGCGAATCTAACGGT 57.316 45.000 0.00 0.00 0.00 4.83
204 205 5.862924 ATATTTCATGGCGAATCTAACGG 57.137 39.130 0.00 0.00 32.32 4.44
205 206 9.825972 AAAATATATTTCATGGCGAATCTAACG 57.174 29.630 11.08 0.00 32.32 3.18
213 214 9.241919 ACCATATGAAAATATATTTCATGGCGA 57.758 29.630 24.11 12.38 45.55 5.54
229 230 9.365906 ACAATGCCAAAGATATACCATATGAAA 57.634 29.630 3.65 0.00 0.00 2.69
230 231 8.938801 ACAATGCCAAAGATATACCATATGAA 57.061 30.769 3.65 0.00 0.00 2.57
231 232 9.671279 CTACAATGCCAAAGATATACCATATGA 57.329 33.333 3.65 0.00 0.00 2.15
232 233 9.671279 TCTACAATGCCAAAGATATACCATATG 57.329 33.333 0.00 0.00 0.00 1.78
233 234 9.672673 GTCTACAATGCCAAAGATATACCATAT 57.327 33.333 0.00 0.00 0.00 1.78
234 235 8.655901 TGTCTACAATGCCAAAGATATACCATA 58.344 33.333 0.00 0.00 0.00 2.74
235 236 7.517320 TGTCTACAATGCCAAAGATATACCAT 58.483 34.615 0.00 0.00 0.00 3.55
236 237 6.894682 TGTCTACAATGCCAAAGATATACCA 58.105 36.000 0.00 0.00 0.00 3.25
237 238 7.986085 ATGTCTACAATGCCAAAGATATACC 57.014 36.000 0.00 0.00 0.00 2.73
269 270 9.853555 CATGCTTTCACCAAGTTTATATACAAA 57.146 29.630 0.00 0.00 34.56 2.83
270 271 9.019656 ACATGCTTTCACCAAGTTTATATACAA 57.980 29.630 0.00 0.00 34.56 2.41
271 272 8.458052 CACATGCTTTCACCAAGTTTATATACA 58.542 33.333 0.00 0.00 34.56 2.29
272 273 8.673711 TCACATGCTTTCACCAAGTTTATATAC 58.326 33.333 0.00 0.00 34.56 1.47
273 274 8.800370 TCACATGCTTTCACCAAGTTTATATA 57.200 30.769 0.00 0.00 34.56 0.86
274 275 7.701539 TCACATGCTTTCACCAAGTTTATAT 57.298 32.000 0.00 0.00 34.56 0.86
275 276 7.517614 TTCACATGCTTTCACCAAGTTTATA 57.482 32.000 0.00 0.00 34.56 0.98
276 277 6.403866 TTCACATGCTTTCACCAAGTTTAT 57.596 33.333 0.00 0.00 34.56 1.40
277 278 5.735922 GCTTCACATGCTTTCACCAAGTTTA 60.736 40.000 0.00 0.00 34.56 2.01
278 279 4.685924 CTTCACATGCTTTCACCAAGTTT 58.314 39.130 0.00 0.00 34.56 2.66
279 280 3.491447 GCTTCACATGCTTTCACCAAGTT 60.491 43.478 0.00 0.00 34.56 2.66
280 281 2.035066 GCTTCACATGCTTTCACCAAGT 59.965 45.455 0.00 0.00 34.56 3.16
281 282 2.295349 AGCTTCACATGCTTTCACCAAG 59.705 45.455 0.00 0.00 37.52 3.61
282 283 2.309613 AGCTTCACATGCTTTCACCAA 58.690 42.857 0.00 0.00 37.52 3.67
283 284 1.985473 AGCTTCACATGCTTTCACCA 58.015 45.000 0.00 0.00 37.52 4.17
290 291 2.574006 TTGAGGAAGCTTCACATGCT 57.426 45.000 27.02 14.63 43.32 3.79
291 292 3.213249 CTTTGAGGAAGCTTCACATGC 57.787 47.619 27.02 9.97 0.00 4.06
301 302 8.133627 CCAAAGATATACAATGCTTTGAGGAAG 58.866 37.037 18.35 0.00 46.11 3.46
302 303 7.416664 GCCAAAGATATACAATGCTTTGAGGAA 60.417 37.037 18.35 2.41 46.11 3.36
303 304 6.039717 GCCAAAGATATACAATGCTTTGAGGA 59.960 38.462 18.35 4.45 46.11 3.71
304 305 6.183360 TGCCAAAGATATACAATGCTTTGAGG 60.183 38.462 18.35 7.07 46.11 3.86
305 306 6.798482 TGCCAAAGATATACAATGCTTTGAG 58.202 36.000 18.35 6.90 46.11 3.02
306 307 6.602803 TCTGCCAAAGATATACAATGCTTTGA 59.397 34.615 18.35 3.59 46.11 2.69
307 308 6.798482 TCTGCCAAAGATATACAATGCTTTG 58.202 36.000 10.58 10.58 44.05 2.77
308 309 6.604795 ACTCTGCCAAAGATATACAATGCTTT 59.395 34.615 0.00 0.00 33.29 3.51
309 310 6.125029 ACTCTGCCAAAGATATACAATGCTT 58.875 36.000 0.00 0.00 33.29 3.91
310 311 5.688807 ACTCTGCCAAAGATATACAATGCT 58.311 37.500 0.00 0.00 33.29 3.79
311 312 6.382869 AACTCTGCCAAAGATATACAATGC 57.617 37.500 0.00 0.00 33.29 3.56
336 337 3.902881 ATATGCATTTCCCGCCAAAAA 57.097 38.095 3.54 0.00 0.00 1.94
337 338 3.902881 AATATGCATTTCCCGCCAAAA 57.097 38.095 3.54 0.00 0.00 2.44
338 339 4.211125 TCTAATATGCATTTCCCGCCAAA 58.789 39.130 3.54 0.00 0.00 3.28
339 340 3.826524 TCTAATATGCATTTCCCGCCAA 58.173 40.909 3.54 0.00 0.00 4.52
340 341 3.500448 TCTAATATGCATTTCCCGCCA 57.500 42.857 3.54 0.00 0.00 5.69
341 342 3.758554 ACATCTAATATGCATTTCCCGCC 59.241 43.478 3.54 0.00 0.00 6.13
342 343 4.455533 TGACATCTAATATGCATTTCCCGC 59.544 41.667 3.54 0.00 0.00 6.13
343 344 6.373779 GTTGACATCTAATATGCATTTCCCG 58.626 40.000 3.54 0.00 0.00 5.14
344 345 6.265196 TGGTTGACATCTAATATGCATTTCCC 59.735 38.462 3.54 0.00 0.00 3.97
345 346 7.275888 TGGTTGACATCTAATATGCATTTCC 57.724 36.000 3.54 0.00 0.00 3.13
349 350 9.524496 ACATATTGGTTGACATCTAATATGCAT 57.476 29.630 26.58 3.79 43.71 3.96
350 351 8.922931 ACATATTGGTTGACATCTAATATGCA 57.077 30.769 26.58 0.00 43.71 3.96
368 369 6.368791 CGTATCACTATCACCCCAACATATTG 59.631 42.308 0.00 0.00 35.40 1.90
369 370 6.042781 ACGTATCACTATCACCCCAACATATT 59.957 38.462 0.00 0.00 0.00 1.28
370 371 5.542635 ACGTATCACTATCACCCCAACATAT 59.457 40.000 0.00 0.00 0.00 1.78
371 372 4.897076 ACGTATCACTATCACCCCAACATA 59.103 41.667 0.00 0.00 0.00 2.29
372 373 3.709653 ACGTATCACTATCACCCCAACAT 59.290 43.478 0.00 0.00 0.00 2.71
373 374 3.101437 ACGTATCACTATCACCCCAACA 58.899 45.455 0.00 0.00 0.00 3.33
374 375 3.814005 ACGTATCACTATCACCCCAAC 57.186 47.619 0.00 0.00 0.00 3.77
375 376 3.133362 GGAACGTATCACTATCACCCCAA 59.867 47.826 0.00 0.00 0.00 4.12
376 377 2.696707 GGAACGTATCACTATCACCCCA 59.303 50.000 0.00 0.00 0.00 4.96
377 378 2.696707 TGGAACGTATCACTATCACCCC 59.303 50.000 0.00 0.00 0.00 4.95
378 379 3.383825 AGTGGAACGTATCACTATCACCC 59.616 47.826 18.32 0.00 45.86 4.61
379 380 4.650754 AGTGGAACGTATCACTATCACC 57.349 45.455 18.32 0.00 45.86 4.02
384 385 6.555812 CTAGCATAGTGGAACGTATCACTA 57.444 41.667 23.86 23.86 46.40 2.74
385 386 5.440234 CTAGCATAGTGGAACGTATCACT 57.560 43.478 21.79 21.79 45.86 3.41
418 419 9.716507 GGCACGCATATAATCGAAATTATAAAT 57.283 29.630 3.30 0.00 41.43 1.40
440 441 2.617274 GGCTTGGAAGTCACGGCAC 61.617 63.158 0.00 0.00 39.48 5.01
441 442 2.281484 GGCTTGGAAGTCACGGCA 60.281 61.111 0.00 0.00 39.48 5.69
442 443 2.281484 TGGCTTGGAAGTCACGGC 60.281 61.111 0.00 0.00 35.36 5.68
446 447 1.597854 CAGCGTGGCTTGGAAGTCA 60.598 57.895 0.00 0.00 36.40 3.41
447 448 1.294659 CTCAGCGTGGCTTGGAAGTC 61.295 60.000 0.00 0.00 36.40 3.01
448 449 1.302033 CTCAGCGTGGCTTGGAAGT 60.302 57.895 0.00 0.00 36.40 3.01
449 450 0.603707 TTCTCAGCGTGGCTTGGAAG 60.604 55.000 0.00 0.00 36.40 3.46
450 451 0.036732 ATTCTCAGCGTGGCTTGGAA 59.963 50.000 5.07 5.07 36.40 3.53
451 452 0.674581 CATTCTCAGCGTGGCTTGGA 60.675 55.000 0.00 0.00 36.40 3.53
452 453 0.674581 TCATTCTCAGCGTGGCTTGG 60.675 55.000 0.00 0.00 36.40 3.61
453 454 0.445436 GTCATTCTCAGCGTGGCTTG 59.555 55.000 0.00 0.00 36.40 4.01
454 455 0.035317 TGTCATTCTCAGCGTGGCTT 59.965 50.000 0.00 0.00 36.40 4.35
455 456 0.671781 GTGTCATTCTCAGCGTGGCT 60.672 55.000 0.00 0.00 40.77 4.75
456 457 0.950555 TGTGTCATTCTCAGCGTGGC 60.951 55.000 0.00 0.00 0.00 5.01
457 458 1.395954 CATGTGTCATTCTCAGCGTGG 59.604 52.381 0.00 0.00 0.00 4.94
458 459 1.201998 GCATGTGTCATTCTCAGCGTG 60.202 52.381 0.00 0.00 0.00 5.34
459 460 1.081892 GCATGTGTCATTCTCAGCGT 58.918 50.000 0.00 0.00 0.00 5.07
460 461 1.081094 TGCATGTGTCATTCTCAGCG 58.919 50.000 0.00 0.00 0.00 5.18
461 462 3.624410 TGTATGCATGTGTCATTCTCAGC 59.376 43.478 10.16 0.00 0.00 4.26
462 463 5.526111 TGATGTATGCATGTGTCATTCTCAG 59.474 40.000 10.16 0.00 35.07 3.35
463 464 5.430007 TGATGTATGCATGTGTCATTCTCA 58.570 37.500 10.16 2.37 35.07 3.27
464 465 5.996669 TGATGTATGCATGTGTCATTCTC 57.003 39.130 10.16 0.00 35.07 2.87
465 466 6.993902 TGTATGATGTATGCATGTGTCATTCT 59.006 34.615 20.33 7.10 35.07 2.40
466 467 7.193377 TGTATGATGTATGCATGTGTCATTC 57.807 36.000 20.33 17.07 35.07 2.67
467 468 7.283807 AGTTGTATGATGTATGCATGTGTCATT 59.716 33.333 20.33 10.20 35.07 2.57
468 469 6.769341 AGTTGTATGATGTATGCATGTGTCAT 59.231 34.615 10.16 16.46 35.07 3.06
469 470 6.114767 AGTTGTATGATGTATGCATGTGTCA 58.885 36.000 10.16 10.52 35.07 3.58
470 471 6.609237 AGTTGTATGATGTATGCATGTGTC 57.391 37.500 10.16 4.83 35.07 3.67
471 472 6.375174 ACAAGTTGTATGATGTATGCATGTGT 59.625 34.615 10.16 0.00 35.07 3.72
472 473 6.788243 ACAAGTTGTATGATGTATGCATGTG 58.212 36.000 10.16 0.00 35.07 3.21
473 474 8.504812 TTACAAGTTGTATGATGTATGCATGT 57.495 30.769 16.26 0.00 32.11 3.21
474 475 9.955208 AATTACAAGTTGTATGATGTATGCATG 57.045 29.630 16.26 0.00 32.11 4.06
477 478 9.450807 GGAAATTACAAGTTGTATGATGTATGC 57.549 33.333 16.26 3.12 32.20 3.14
488 489 8.960591 CCATGAGAATAGGAAATTACAAGTTGT 58.039 33.333 14.05 14.05 0.00 3.32
489 490 8.408601 CCCATGAGAATAGGAAATTACAAGTTG 58.591 37.037 0.00 0.00 0.00 3.16
490 491 7.561356 CCCCATGAGAATAGGAAATTACAAGTT 59.439 37.037 0.00 0.00 0.00 2.66
491 492 7.062957 CCCCATGAGAATAGGAAATTACAAGT 58.937 38.462 0.00 0.00 0.00 3.16
492 493 6.491403 CCCCCATGAGAATAGGAAATTACAAG 59.509 42.308 0.00 0.00 0.00 3.16
493 494 6.372931 CCCCCATGAGAATAGGAAATTACAA 58.627 40.000 0.00 0.00 0.00 2.41
494 495 5.692781 GCCCCCATGAGAATAGGAAATTACA 60.693 44.000 0.00 0.00 0.00 2.41
495 496 4.767409 GCCCCCATGAGAATAGGAAATTAC 59.233 45.833 0.00 0.00 0.00 1.89
496 497 4.669768 AGCCCCCATGAGAATAGGAAATTA 59.330 41.667 0.00 0.00 0.00 1.40
497 498 3.468625 AGCCCCCATGAGAATAGGAAATT 59.531 43.478 0.00 0.00 0.00 1.82
498 499 3.066704 AGCCCCCATGAGAATAGGAAAT 58.933 45.455 0.00 0.00 0.00 2.17
499 500 2.502745 AGCCCCCATGAGAATAGGAAA 58.497 47.619 0.00 0.00 0.00 3.13
500 501 2.212752 AGCCCCCATGAGAATAGGAA 57.787 50.000 0.00 0.00 0.00 3.36
501 502 3.585077 ATAGCCCCCATGAGAATAGGA 57.415 47.619 0.00 0.00 0.00 2.94
502 503 5.779241 TTTATAGCCCCCATGAGAATAGG 57.221 43.478 0.00 0.00 0.00 2.57
503 504 8.552296 AGTATTTTATAGCCCCCATGAGAATAG 58.448 37.037 0.00 0.00 0.00 1.73
504 505 8.463055 AGTATTTTATAGCCCCCATGAGAATA 57.537 34.615 0.00 0.00 0.00 1.75
505 506 7.348680 AGTATTTTATAGCCCCCATGAGAAT 57.651 36.000 0.00 0.00 0.00 2.40
506 507 6.780198 AGTATTTTATAGCCCCCATGAGAA 57.220 37.500 0.00 0.00 0.00 2.87
507 508 7.023120 AGTAGTATTTTATAGCCCCCATGAGA 58.977 38.462 0.00 0.00 0.00 3.27
508 509 7.259088 AGTAGTATTTTATAGCCCCCATGAG 57.741 40.000 0.00 0.00 0.00 2.90
509 510 6.214819 GGAGTAGTATTTTATAGCCCCCATGA 59.785 42.308 0.00 0.00 0.00 3.07
510 511 6.415573 GGAGTAGTATTTTATAGCCCCCATG 58.584 44.000 0.00 0.00 0.00 3.66
511 512 5.491439 GGGAGTAGTATTTTATAGCCCCCAT 59.509 44.000 0.00 0.00 0.00 4.00
512 513 4.848086 GGGAGTAGTATTTTATAGCCCCCA 59.152 45.833 0.00 0.00 0.00 4.96
513 514 5.099378 AGGGAGTAGTATTTTATAGCCCCC 58.901 45.833 0.00 0.00 33.51 5.40
514 515 5.189342 GGAGGGAGTAGTATTTTATAGCCCC 59.811 48.000 0.00 0.00 33.51 5.80
515 516 5.105432 CGGAGGGAGTAGTATTTTATAGCCC 60.105 48.000 0.00 0.00 0.00 5.19
516 517 5.479724 ACGGAGGGAGTAGTATTTTATAGCC 59.520 44.000 0.00 0.00 0.00 3.93
517 518 6.350027 GGACGGAGGGAGTAGTATTTTATAGC 60.350 46.154 0.00 0.00 0.00 2.97
518 519 6.152492 GGGACGGAGGGAGTAGTATTTTATAG 59.848 46.154 0.00 0.00 0.00 1.31
519 520 6.012745 GGGACGGAGGGAGTAGTATTTTATA 58.987 44.000 0.00 0.00 0.00 0.98
520 521 4.837298 GGGACGGAGGGAGTAGTATTTTAT 59.163 45.833 0.00 0.00 0.00 1.40
521 522 4.218312 GGGACGGAGGGAGTAGTATTTTA 58.782 47.826 0.00 0.00 0.00 1.52
522 523 3.036819 GGGACGGAGGGAGTAGTATTTT 58.963 50.000 0.00 0.00 0.00 1.82
523 524 2.023695 TGGGACGGAGGGAGTAGTATTT 60.024 50.000 0.00 0.00 0.00 1.40
524 525 1.572415 TGGGACGGAGGGAGTAGTATT 59.428 52.381 0.00 0.00 0.00 1.89
525 526 1.229131 TGGGACGGAGGGAGTAGTAT 58.771 55.000 0.00 0.00 0.00 2.12
526 527 1.229131 ATGGGACGGAGGGAGTAGTA 58.771 55.000 0.00 0.00 0.00 1.82
527 528 1.229131 TATGGGACGGAGGGAGTAGT 58.771 55.000 0.00 0.00 0.00 2.73
528 529 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
529 530 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
530 531 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
531 532 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
532 533 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
533 534 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
534 535 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
535 536 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
536 537 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
560 561 9.919348 GTTTTTCGACATTAGTGTAGTGTTAAA 57.081 29.630 0.00 0.00 39.09 1.52
561 562 9.096160 TGTTTTTCGACATTAGTGTAGTGTTAA 57.904 29.630 0.00 0.00 39.09 2.01
562 563 8.645730 TGTTTTTCGACATTAGTGTAGTGTTA 57.354 30.769 0.00 0.00 39.09 2.41
563 564 7.542534 TGTTTTTCGACATTAGTGTAGTGTT 57.457 32.000 0.00 0.00 39.09 3.32
564 565 7.656137 AGATGTTTTTCGACATTAGTGTAGTGT 59.344 33.333 0.00 0.00 40.21 3.55
565 566 8.018677 AGATGTTTTTCGACATTAGTGTAGTG 57.981 34.615 0.00 0.00 40.21 2.74
566 567 8.603242 AAGATGTTTTTCGACATTAGTGTAGT 57.397 30.769 0.00 0.00 40.21 2.73
567 568 9.953825 GTAAGATGTTTTTCGACATTAGTGTAG 57.046 33.333 0.00 0.00 40.21 2.74
568 569 9.478768 TGTAAGATGTTTTTCGACATTAGTGTA 57.521 29.630 0.00 0.00 40.21 2.90
569 570 8.373048 TGTAAGATGTTTTTCGACATTAGTGT 57.627 30.769 0.00 0.00 40.21 3.55
570 571 9.825972 AATGTAAGATGTTTTTCGACATTAGTG 57.174 29.630 0.22 0.00 40.21 2.74
574 575 9.787532 CCATAATGTAAGATGTTTTTCGACATT 57.212 29.630 6.10 6.10 40.21 2.71
575 576 8.405531 CCCATAATGTAAGATGTTTTTCGACAT 58.594 33.333 0.00 0.00 42.68 3.06
576 577 7.608376 TCCCATAATGTAAGATGTTTTTCGACA 59.392 33.333 0.00 0.00 0.00 4.35
577 578 7.908601 GTCCCATAATGTAAGATGTTTTTCGAC 59.091 37.037 0.00 0.00 0.00 4.20
578 579 7.201574 CGTCCCATAATGTAAGATGTTTTTCGA 60.202 37.037 0.00 0.00 0.00 3.71
579 580 6.905076 CGTCCCATAATGTAAGATGTTTTTCG 59.095 38.462 0.00 0.00 0.00 3.46
580 581 7.066525 TCCGTCCCATAATGTAAGATGTTTTTC 59.933 37.037 0.00 0.00 0.00 2.29
581 582 6.887545 TCCGTCCCATAATGTAAGATGTTTTT 59.112 34.615 0.00 0.00 0.00 1.94
582 583 6.419791 TCCGTCCCATAATGTAAGATGTTTT 58.580 36.000 0.00 0.00 0.00 2.43
583 584 5.996644 TCCGTCCCATAATGTAAGATGTTT 58.003 37.500 0.00 0.00 0.00 2.83
584 585 5.454755 CCTCCGTCCCATAATGTAAGATGTT 60.455 44.000 0.00 0.00 0.00 2.71
585 586 4.040461 CCTCCGTCCCATAATGTAAGATGT 59.960 45.833 0.00 0.00 0.00 3.06
586 587 4.283467 TCCTCCGTCCCATAATGTAAGATG 59.717 45.833 0.00 0.00 0.00 2.90
587 588 4.489737 TCCTCCGTCCCATAATGTAAGAT 58.510 43.478 0.00 0.00 0.00 2.40
588 589 3.895656 CTCCTCCGTCCCATAATGTAAGA 59.104 47.826 0.00 0.00 0.00 2.10
589 590 3.555168 GCTCCTCCGTCCCATAATGTAAG 60.555 52.174 0.00 0.00 0.00 2.34
590 591 2.367567 GCTCCTCCGTCCCATAATGTAA 59.632 50.000 0.00 0.00 0.00 2.41
591 592 1.968493 GCTCCTCCGTCCCATAATGTA 59.032 52.381 0.00 0.00 0.00 2.29
592 593 0.759346 GCTCCTCCGTCCCATAATGT 59.241 55.000 0.00 0.00 0.00 2.71
593 594 0.758734 TGCTCCTCCGTCCCATAATG 59.241 55.000 0.00 0.00 0.00 1.90
594 595 1.507140 TTGCTCCTCCGTCCCATAAT 58.493 50.000 0.00 0.00 0.00 1.28
595 596 1.281419 TTTGCTCCTCCGTCCCATAA 58.719 50.000 0.00 0.00 0.00 1.90
596 597 1.507140 ATTTGCTCCTCCGTCCCATA 58.493 50.000 0.00 0.00 0.00 2.74
597 598 1.417890 CTATTTGCTCCTCCGTCCCAT 59.582 52.381 0.00 0.00 0.00 4.00
598 599 0.830648 CTATTTGCTCCTCCGTCCCA 59.169 55.000 0.00 0.00 0.00 4.37
599 600 0.533085 GCTATTTGCTCCTCCGTCCC 60.533 60.000 0.00 0.00 38.95 4.46
600 601 0.178068 TGCTATTTGCTCCTCCGTCC 59.822 55.000 0.00 0.00 43.37 4.79
601 602 2.246719 ATGCTATTTGCTCCTCCGTC 57.753 50.000 0.00 0.00 43.37 4.79
602 603 3.838244 TTATGCTATTTGCTCCTCCGT 57.162 42.857 0.00 0.00 43.37 4.69
603 604 4.576463 AGTTTTATGCTATTTGCTCCTCCG 59.424 41.667 0.00 0.00 43.37 4.63
604 605 6.768381 AGTAGTTTTATGCTATTTGCTCCTCC 59.232 38.462 0.00 0.00 43.37 4.30
605 606 7.793927 AGTAGTTTTATGCTATTTGCTCCTC 57.206 36.000 0.00 0.00 43.37 3.71
606 607 8.487028 ACTAGTAGTTTTATGCTATTTGCTCCT 58.513 33.333 0.00 0.00 43.37 3.69
1287 1314 6.600032 TCAACAAGCACTGTTCTTTAAACCTA 59.400 34.615 1.48 0.00 45.50 3.08
1363 1390 0.399949 TGGTGTCTGGTTCCTCCTGT 60.400 55.000 0.00 0.00 36.66 4.00
1800 1860 5.833406 TTGCACAAACATCTCTGAAGAAA 57.167 34.783 0.00 0.00 34.49 2.52
1872 1935 5.532406 TGGACAATTCCTTCTCAAACTTCTG 59.468 40.000 0.00 0.00 43.31 3.02
1889 1952 4.202461 TGTTCACTCTTAAGCCTGGACAAT 60.202 41.667 9.71 0.00 0.00 2.71
1893 1956 3.582647 TCATGTTCACTCTTAAGCCTGGA 59.417 43.478 0.00 0.00 0.00 3.86
2185 2272 2.573462 TCAACAGCCTTCATAGCCTTCT 59.427 45.455 0.00 0.00 0.00 2.85
2282 2369 2.235898 CTCTAACTTCTCCTTGCTGCCT 59.764 50.000 0.00 0.00 0.00 4.75
2970 3118 5.558818 AGTTCTTCATCATTGCACTTCTCT 58.441 37.500 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.