Multiple sequence alignment - TraesCS3D01G408600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G408600 chr3D 100.000 8329 0 0 1 8329 523152058 523160386 0.000000e+00 15381.0
1 TraesCS3D01G408600 chr3D 93.407 91 5 1 5324 5413 108916256 108916346 5.240000e-27 134.0
2 TraesCS3D01G408600 chr3D 94.118 85 3 2 6275 6357 523158301 523158385 2.440000e-25 128.0
3 TraesCS3D01G408600 chr3D 94.118 85 3 2 6244 6328 523158332 523158414 2.440000e-25 128.0
4 TraesCS3D01G408600 chr3D 90.909 55 3 2 6305 6357 523158301 523158355 1.160000e-08 73.1
5 TraesCS3D01G408600 chr3D 90.909 55 3 2 6244 6298 523158362 523158414 1.160000e-08 73.1
6 TraesCS3D01G408600 chr3A 94.387 5095 185 40 2222 7267 657923483 657928525 0.000000e+00 7731.0
7 TraesCS3D01G408600 chr3A 92.256 1330 69 19 772 2082 657922022 657923336 0.000000e+00 1855.0
8 TraesCS3D01G408600 chr3A 89.907 753 50 6 7579 8329 657928845 657929573 0.000000e+00 946.0
9 TraesCS3D01G408600 chr3A 96.053 76 3 0 2077 2152 657923359 657923434 3.160000e-24 124.0
10 TraesCS3D01G408600 chr3A 90.244 82 6 2 8144 8224 704762751 704762831 1.140000e-18 106.0
11 TraesCS3D01G408600 chr3A 90.909 55 3 2 6305 6357 657927518 657927572 1.160000e-08 73.1
12 TraesCS3D01G408600 chr3A 90.909 55 3 2 6244 6298 657927549 657927601 1.160000e-08 73.1
13 TraesCS3D01G408600 chr3A 100.000 33 0 0 2189 2221 657923433 657923465 2.510000e-05 62.1
14 TraesCS3D01G408600 chr3B 91.438 2476 111 32 1031 3455 689508768 689511193 0.000000e+00 3304.0
15 TraesCS3D01G408600 chr3B 96.071 1680 48 6 3453 5127 689511314 689512980 0.000000e+00 2721.0
16 TraesCS3D01G408600 chr3B 91.453 1404 70 26 5810 7198 689514068 689515436 0.000000e+00 1882.0
17 TraesCS3D01G408600 chr3B 86.667 690 61 14 7590 8260 689515796 689516473 0.000000e+00 736.0
18 TraesCS3D01G408600 chr3B 92.972 498 35 0 5323 5820 689513454 689513951 0.000000e+00 726.0
19 TraesCS3D01G408600 chr3B 93.191 235 10 5 5117 5349 689513162 689513392 2.880000e-89 340.0
20 TraesCS3D01G408600 chr3B 94.521 219 2 4 825 1042 689508336 689508545 6.230000e-86 329.0
21 TraesCS3D01G408600 chr3B 96.386 83 3 0 8247 8329 689516486 689516568 4.050000e-28 137.0
22 TraesCS3D01G408600 chr3B 87.850 107 13 0 8147 8253 810117008 810116902 8.780000e-25 126.0
23 TraesCS3D01G408600 chr3B 90.909 55 3 2 6244 6298 689514533 689514585 1.160000e-08 73.1
24 TraesCS3D01G408600 chr3B 89.091 55 4 2 6305 6357 689514502 689514556 5.400000e-07 67.6
25 TraesCS3D01G408600 chr2A 90.868 657 58 2 2 657 686259732 686260387 0.000000e+00 880.0
26 TraesCS3D01G408600 chr5D 89.242 660 61 8 1 656 397428291 397427638 0.000000e+00 817.0
27 TraesCS3D01G408600 chr5D 88.786 651 63 8 1 646 437082589 437083234 0.000000e+00 789.0
28 TraesCS3D01G408600 chr1D 89.450 654 56 11 1 650 458471701 458471057 0.000000e+00 813.0
29 TraesCS3D01G408600 chr1D 84.202 595 74 10 3969 4547 23366563 23367153 2.030000e-155 560.0
30 TraesCS3D01G408600 chr1D 92.222 90 6 1 5325 5413 141706065 141705976 8.780000e-25 126.0
31 TraesCS3D01G408600 chr7A 88.754 658 66 6 1 654 430799822 430800475 0.000000e+00 798.0
32 TraesCS3D01G408600 chr2D 88.619 659 65 8 1 654 570986931 570987584 0.000000e+00 793.0
33 TraesCS3D01G408600 chr2D 91.489 94 7 1 5324 5416 249879446 249879539 2.440000e-25 128.0
34 TraesCS3D01G408600 chrUn 88.685 654 62 7 1 646 28777098 28776449 0.000000e+00 787.0
35 TraesCS3D01G408600 chrUn 82.540 126 11 5 8140 8255 39802266 39802142 5.320000e-17 100.0
36 TraesCS3D01G408600 chrUn 82.540 126 11 5 8140 8255 300443042 300442918 5.320000e-17 100.0
37 TraesCS3D01G408600 chr2B 88.244 655 77 0 1 655 12940336 12939682 0.000000e+00 784.0
38 TraesCS3D01G408600 chr2B 90.426 94 8 1 5324 5416 338733739 338733832 1.140000e-23 122.0
39 TraesCS3D01G408600 chr1B 88.432 657 66 6 1 654 683374778 683374129 0.000000e+00 784.0
40 TraesCS3D01G408600 chr1B 92.222 90 6 1 5325 5413 195591289 195591200 8.780000e-25 126.0
41 TraesCS3D01G408600 chr4A 94.253 87 2 3 5329 5413 464695825 464695910 6.780000e-26 130.0
42 TraesCS3D01G408600 chr4A 90.476 84 8 0 8141 8224 728456566 728456483 2.460000e-20 111.0
43 TraesCS3D01G408600 chr1A 89.796 98 9 1 5317 5413 148958877 148958974 3.160000e-24 124.0
44 TraesCS3D01G408600 chr7B 89.873 79 8 0 8146 8224 64693419 64693497 1.480000e-17 102.0
45 TraesCS3D01G408600 chr7B 88.889 81 9 0 8144 8224 24418363 24418283 5.320000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G408600 chr3D 523152058 523160386 8328 False 3156.640000 15381 94.010800 1 8329 5 chr3D.!!$F2 8328
1 TraesCS3D01G408600 chr3A 657922022 657929573 7551 False 1552.042857 7731 93.488714 772 8329 7 chr3A.!!$F2 7557
2 TraesCS3D01G408600 chr3B 689508336 689516568 8232 False 1031.570000 3304 92.269900 825 8329 10 chr3B.!!$F1 7504
3 TraesCS3D01G408600 chr2A 686259732 686260387 655 False 880.000000 880 90.868000 2 657 1 chr2A.!!$F1 655
4 TraesCS3D01G408600 chr5D 397427638 397428291 653 True 817.000000 817 89.242000 1 656 1 chr5D.!!$R1 655
5 TraesCS3D01G408600 chr5D 437082589 437083234 645 False 789.000000 789 88.786000 1 646 1 chr5D.!!$F1 645
6 TraesCS3D01G408600 chr1D 458471057 458471701 644 True 813.000000 813 89.450000 1 650 1 chr1D.!!$R2 649
7 TraesCS3D01G408600 chr1D 23366563 23367153 590 False 560.000000 560 84.202000 3969 4547 1 chr1D.!!$F1 578
8 TraesCS3D01G408600 chr7A 430799822 430800475 653 False 798.000000 798 88.754000 1 654 1 chr7A.!!$F1 653
9 TraesCS3D01G408600 chr2D 570986931 570987584 653 False 793.000000 793 88.619000 1 654 1 chr2D.!!$F2 653
10 TraesCS3D01G408600 chrUn 28776449 28777098 649 True 787.000000 787 88.685000 1 646 1 chrUn.!!$R1 645
11 TraesCS3D01G408600 chr2B 12939682 12940336 654 True 784.000000 784 88.244000 1 655 1 chr2B.!!$R1 654
12 TraesCS3D01G408600 chr1B 683374129 683374778 649 True 784.000000 784 88.432000 1 654 1 chr1B.!!$R2 653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
740 750 0.035056 ACTTTCAGGAATCCAGGCCG 60.035 55.0 0.61 0.00 0.00 6.13 F
1457 1715 0.028110 GATTTCTGATTCGGTGCGGC 59.972 55.0 0.00 0.00 0.00 6.53 F
1599 1857 0.931005 GAGCTCGGTTCCGCTTAATG 59.069 55.0 6.35 0.00 36.45 1.90 F
3436 3800 0.031857 TTGCAAACAGGCATTGTCCG 59.968 50.0 0.00 0.00 44.48 4.79 F
3901 4391 0.764890 TTGCGGGCCTATTATCTGCT 59.235 50.0 0.84 0.00 34.19 4.24 F
4187 4687 0.773644 ACCAGGACAATGCTTCCACT 59.226 50.0 0.00 0.00 35.33 4.00 F
5697 6484 0.679321 TTGCCTTGCCATATCACGCA 60.679 50.0 0.00 0.00 0.00 5.24 F
7086 8018 0.108756 TTGTGGACGACGAACACACA 60.109 50.0 22.09 17.03 43.99 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1542 1800 0.462047 ACGAGCGATGATCCCAAACC 60.462 55.000 0.00 0.00 0.00 3.27 R
3416 3780 1.337074 CGGACAATGCCTGTTTGCAAT 60.337 47.619 0.00 0.00 45.84 3.56 R
3554 4044 1.334556 GCATGAATGACAATGGCGCTA 59.665 47.619 7.64 0.00 0.00 4.26 R
4455 4962 1.742761 ACATCGCAGGAATTGGTCAG 58.257 50.000 0.00 0.00 0.00 3.51 R
5670 6457 0.112995 ATGGCAAGGCAAGTCTTCCA 59.887 50.000 0.00 7.64 32.65 3.53 R
5806 6593 0.534877 ACGGCTCAGCACAACAATGA 60.535 50.000 0.00 0.00 0.00 2.57 R
7175 8110 0.036732 ATGCTGCGAAGGAAACCAGA 59.963 50.000 0.00 0.00 0.00 3.86 R
7985 9033 2.279741 ACATCATGGAACGATGAACCG 58.720 47.619 7.12 0.00 42.39 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 5.181245 TGCTGCTCGGGAATAATTAATAAGC 59.819 40.000 0.00 0.00 0.00 3.09
117 118 0.250166 GCTGTTACTTGGACGTGGGT 60.250 55.000 0.00 0.00 0.00 4.51
127 130 1.144093 TGGACGTGGGTTTTTCTCCAT 59.856 47.619 0.00 0.00 35.28 3.41
145 153 4.397832 GACTTACCCGGCCCGCAA 62.398 66.667 0.00 0.00 0.00 4.85
209 217 2.540145 GGTTTCGCACCATCGTTCT 58.460 52.632 0.00 0.00 46.42 3.01
262 270 2.357517 CTCCTTTCGGCGTGCACT 60.358 61.111 16.19 0.00 0.00 4.40
343 353 1.886222 CGATCAGGTTTTTGGGGAGCA 60.886 52.381 0.00 0.00 0.00 4.26
491 501 3.963129 TGTGTTTCTGTCCTTCCTGTTT 58.037 40.909 0.00 0.00 0.00 2.83
521 531 7.383687 TCGTGGTAGAATTCATGTTTCTAGTT 58.616 34.615 16.18 0.92 36.59 2.24
580 590 9.472361 GCTATTCCACGTGATTAGTTTAATCTA 57.528 33.333 19.30 0.00 43.79 1.98
602 612 8.981724 TCTATGTTATAGCCGTCATGATTTAC 57.018 34.615 0.00 0.00 0.00 2.01
618 628 9.104965 TCATGATTTACTTTGTACTTATTCGGG 57.895 33.333 0.00 0.00 0.00 5.14
636 646 6.949578 TTCGGGTTAAATCTTGTAGTAACG 57.050 37.500 0.00 0.00 0.00 3.18
649 659 9.982651 ATCTTGTAGTAACGTGCTCATATATTT 57.017 29.630 0.00 0.00 0.00 1.40
657 667 9.204570 GTAACGTGCTCATATATTTAACATCCT 57.795 33.333 0.00 0.00 0.00 3.24
658 668 7.891183 ACGTGCTCATATATTTAACATCCTC 57.109 36.000 0.00 0.00 0.00 3.71
659 669 7.671302 ACGTGCTCATATATTTAACATCCTCT 58.329 34.615 0.00 0.00 0.00 3.69
660 670 7.600375 ACGTGCTCATATATTTAACATCCTCTG 59.400 37.037 0.00 0.00 0.00 3.35
661 671 7.412346 CGTGCTCATATATTTAACATCCTCTGC 60.412 40.741 0.00 0.00 0.00 4.26
662 672 7.388776 GTGCTCATATATTTAACATCCTCTGCA 59.611 37.037 0.00 0.00 0.00 4.41
663 673 7.605309 TGCTCATATATTTAACATCCTCTGCAG 59.395 37.037 7.63 7.63 0.00 4.41
664 674 7.413877 GCTCATATATTTAACATCCTCTGCAGC 60.414 40.741 9.47 0.00 0.00 5.25
665 675 7.452562 TCATATATTTAACATCCTCTGCAGCA 58.547 34.615 9.47 0.00 0.00 4.41
666 676 7.605309 TCATATATTTAACATCCTCTGCAGCAG 59.395 37.037 17.10 17.10 0.00 4.24
667 677 1.742761 TTAACATCCTCTGCAGCAGC 58.257 50.000 18.43 0.00 42.57 5.25
677 687 2.671619 GCAGCAGCACGGGGTAAA 60.672 61.111 0.00 0.00 41.58 2.01
678 688 2.978018 GCAGCAGCACGGGGTAAAC 61.978 63.158 0.00 0.00 41.58 2.01
679 689 1.599518 CAGCAGCACGGGGTAAACA 60.600 57.895 0.00 0.00 0.00 2.83
680 690 1.149627 AGCAGCACGGGGTAAACAA 59.850 52.632 0.00 0.00 0.00 2.83
681 691 0.466555 AGCAGCACGGGGTAAACAAA 60.467 50.000 0.00 0.00 0.00 2.83
682 692 0.318360 GCAGCACGGGGTAAACAAAC 60.318 55.000 0.00 0.00 0.00 2.93
683 693 0.312729 CAGCACGGGGTAAACAAACC 59.687 55.000 0.00 0.00 38.94 3.27
684 694 0.106619 AGCACGGGGTAAACAAACCA 60.107 50.000 0.00 0.00 41.67 3.67
685 695 0.745468 GCACGGGGTAAACAAACCAA 59.255 50.000 0.00 0.00 41.67 3.67
686 696 1.536496 GCACGGGGTAAACAAACCAAC 60.536 52.381 0.00 0.00 41.67 3.77
687 697 1.067364 CACGGGGTAAACAAACCAACC 59.933 52.381 0.00 0.00 41.67 3.77
688 698 0.311477 CGGGGTAAACAAACCAACCG 59.689 55.000 0.00 0.00 41.67 4.44
689 699 1.689984 GGGGTAAACAAACCAACCGA 58.310 50.000 0.00 0.00 41.67 4.69
690 700 2.241160 GGGGTAAACAAACCAACCGAT 58.759 47.619 0.00 0.00 41.67 4.18
691 701 2.629137 GGGGTAAACAAACCAACCGATT 59.371 45.455 0.00 0.00 41.67 3.34
692 702 3.305539 GGGGTAAACAAACCAACCGATTC 60.306 47.826 0.00 0.00 41.67 2.52
693 703 3.570975 GGGTAAACAAACCAACCGATTCT 59.429 43.478 0.00 0.00 41.67 2.40
694 704 4.542735 GGTAAACAAACCAACCGATTCTG 58.457 43.478 0.00 0.00 39.50 3.02
695 705 4.276431 GGTAAACAAACCAACCGATTCTGA 59.724 41.667 0.00 0.00 39.50 3.27
696 706 5.048294 GGTAAACAAACCAACCGATTCTGAT 60.048 40.000 0.00 0.00 39.50 2.90
697 707 5.529581 AAACAAACCAACCGATTCTGATT 57.470 34.783 0.00 0.00 0.00 2.57
698 708 4.766404 ACAAACCAACCGATTCTGATTC 57.234 40.909 0.00 0.00 0.00 2.52
699 709 4.398319 ACAAACCAACCGATTCTGATTCT 58.602 39.130 0.00 0.00 0.00 2.40
700 710 4.827284 ACAAACCAACCGATTCTGATTCTT 59.173 37.500 0.00 0.00 0.00 2.52
701 711 5.048713 ACAAACCAACCGATTCTGATTCTTC 60.049 40.000 0.00 0.00 0.00 2.87
702 712 4.286297 ACCAACCGATTCTGATTCTTCA 57.714 40.909 0.00 0.00 0.00 3.02
715 725 2.099141 TTCTTCAGAATCCACGGCTG 57.901 50.000 0.00 0.00 0.00 4.85
716 726 0.391661 TCTTCAGAATCCACGGCTGC 60.392 55.000 0.00 0.00 0.00 5.25
717 727 0.674581 CTTCAGAATCCACGGCTGCA 60.675 55.000 0.50 0.00 0.00 4.41
718 728 0.674581 TTCAGAATCCACGGCTGCAG 60.675 55.000 10.11 10.11 0.00 4.41
719 729 2.437359 AGAATCCACGGCTGCAGC 60.437 61.111 30.88 30.88 41.14 5.25
720 730 2.747460 GAATCCACGGCTGCAGCA 60.747 61.111 37.63 19.39 44.36 4.41
721 731 2.282391 AATCCACGGCTGCAGCAA 60.282 55.556 37.63 18.49 44.36 3.91
722 732 2.533391 GAATCCACGGCTGCAGCAAC 62.533 60.000 37.63 21.66 44.36 4.17
723 733 3.557903 ATCCACGGCTGCAGCAACT 62.558 57.895 37.63 17.84 44.36 3.16
724 734 3.289834 CCACGGCTGCAGCAACTT 61.290 61.111 37.63 17.03 44.36 2.66
725 735 2.723746 CACGGCTGCAGCAACTTT 59.276 55.556 37.63 15.21 44.36 2.66
726 736 1.370900 CACGGCTGCAGCAACTTTC 60.371 57.895 37.63 19.46 44.36 2.62
727 737 1.823470 ACGGCTGCAGCAACTTTCA 60.823 52.632 37.63 0.00 44.36 2.69
728 738 1.081641 CGGCTGCAGCAACTTTCAG 60.082 57.895 37.63 14.99 44.36 3.02
729 739 1.288127 GGCTGCAGCAACTTTCAGG 59.712 57.895 37.63 0.00 44.36 3.86
730 740 1.174712 GGCTGCAGCAACTTTCAGGA 61.175 55.000 37.63 0.00 44.36 3.86
731 741 0.670162 GCTGCAGCAACTTTCAGGAA 59.330 50.000 33.36 0.00 41.59 3.36
732 742 1.271656 GCTGCAGCAACTTTCAGGAAT 59.728 47.619 33.36 0.00 41.59 3.01
733 743 2.670509 GCTGCAGCAACTTTCAGGAATC 60.671 50.000 33.36 0.00 41.59 2.52
734 744 1.888512 TGCAGCAACTTTCAGGAATCC 59.111 47.619 0.00 0.00 0.00 3.01
735 745 1.888512 GCAGCAACTTTCAGGAATCCA 59.111 47.619 0.61 0.00 0.00 3.41
736 746 2.094854 GCAGCAACTTTCAGGAATCCAG 60.095 50.000 0.61 0.00 0.00 3.86
737 747 2.490903 CAGCAACTTTCAGGAATCCAGG 59.509 50.000 0.61 0.00 0.00 4.45
738 748 1.203287 GCAACTTTCAGGAATCCAGGC 59.797 52.381 0.61 0.00 0.00 4.85
739 749 1.821136 CAACTTTCAGGAATCCAGGCC 59.179 52.381 0.61 0.00 0.00 5.19
740 750 0.035056 ACTTTCAGGAATCCAGGCCG 60.035 55.000 0.61 0.00 0.00 6.13
741 751 0.253044 CTTTCAGGAATCCAGGCCGA 59.747 55.000 0.61 0.00 0.00 5.54
742 752 0.695924 TTTCAGGAATCCAGGCCGAA 59.304 50.000 0.61 0.00 0.00 4.30
743 753 0.918983 TTCAGGAATCCAGGCCGAAT 59.081 50.000 0.61 0.00 0.00 3.34
744 754 0.469917 TCAGGAATCCAGGCCGAATC 59.530 55.000 0.61 0.00 0.00 2.52
745 755 0.882042 CAGGAATCCAGGCCGAATCG 60.882 60.000 0.61 0.00 0.00 3.34
746 756 1.048724 AGGAATCCAGGCCGAATCGA 61.049 55.000 3.36 0.00 0.00 3.59
747 757 0.035458 GGAATCCAGGCCGAATCGAT 59.965 55.000 3.36 0.00 0.00 3.59
748 758 1.543429 GGAATCCAGGCCGAATCGATT 60.543 52.381 11.20 11.20 0.00 3.34
749 759 1.801178 GAATCCAGGCCGAATCGATTC 59.199 52.381 25.18 25.18 34.02 2.52
750 760 1.051812 ATCCAGGCCGAATCGATTCT 58.948 50.000 29.97 13.16 34.69 2.40
751 761 0.389391 TCCAGGCCGAATCGATTCTC 59.611 55.000 29.97 21.99 34.69 2.87
752 762 0.104855 CCAGGCCGAATCGATTCTCA 59.895 55.000 29.97 0.00 34.69 3.27
753 763 1.270518 CCAGGCCGAATCGATTCTCAT 60.271 52.381 29.97 18.77 34.69 2.90
754 764 2.029020 CCAGGCCGAATCGATTCTCATA 60.029 50.000 29.97 0.00 34.69 2.15
755 765 3.554960 CCAGGCCGAATCGATTCTCATAA 60.555 47.826 29.97 0.00 34.69 1.90
756 766 4.058124 CAGGCCGAATCGATTCTCATAAA 58.942 43.478 29.97 0.00 34.69 1.40
757 767 4.692625 CAGGCCGAATCGATTCTCATAAAT 59.307 41.667 29.97 11.09 34.69 1.40
758 768 5.180117 CAGGCCGAATCGATTCTCATAAATT 59.820 40.000 29.97 9.43 34.69 1.82
759 769 5.765182 AGGCCGAATCGATTCTCATAAATTT 59.235 36.000 29.97 8.20 34.69 1.82
760 770 6.073003 AGGCCGAATCGATTCTCATAAATTTC 60.073 38.462 29.97 6.73 34.69 2.17
761 771 6.073003 GGCCGAATCGATTCTCATAAATTTCT 60.073 38.462 29.97 0.00 34.69 2.52
762 772 7.117812 GGCCGAATCGATTCTCATAAATTTCTA 59.882 37.037 29.97 0.00 34.69 2.10
763 773 8.165428 GCCGAATCGATTCTCATAAATTTCTAG 58.835 37.037 29.97 12.93 34.69 2.43
764 774 8.165428 CCGAATCGATTCTCATAAATTTCTAGC 58.835 37.037 29.97 4.38 34.69 3.42
765 775 8.165428 CGAATCGATTCTCATAAATTTCTAGCC 58.835 37.037 29.97 4.07 34.69 3.93
766 776 7.913674 ATCGATTCTCATAAATTTCTAGCCC 57.086 36.000 0.00 0.00 0.00 5.19
767 777 6.826668 TCGATTCTCATAAATTTCTAGCCCA 58.173 36.000 0.00 0.00 0.00 5.36
768 778 7.279615 TCGATTCTCATAAATTTCTAGCCCAA 58.720 34.615 0.00 0.00 0.00 4.12
769 779 7.773224 TCGATTCTCATAAATTTCTAGCCCAAA 59.227 33.333 0.00 0.00 0.00 3.28
770 780 7.857885 CGATTCTCATAAATTTCTAGCCCAAAC 59.142 37.037 0.00 0.00 0.00 2.93
771 781 7.404671 TTCTCATAAATTTCTAGCCCAAACC 57.595 36.000 0.00 0.00 0.00 3.27
772 782 6.489603 TCTCATAAATTTCTAGCCCAAACCA 58.510 36.000 0.00 0.00 0.00 3.67
773 783 6.951198 TCTCATAAATTTCTAGCCCAAACCAA 59.049 34.615 0.00 0.00 0.00 3.67
774 784 7.122650 TCTCATAAATTTCTAGCCCAAACCAAG 59.877 37.037 0.00 0.00 0.00 3.61
775 785 6.951198 TCATAAATTTCTAGCCCAAACCAAGA 59.049 34.615 0.00 0.00 0.00 3.02
776 786 5.728637 AAATTTCTAGCCCAAACCAAGAG 57.271 39.130 0.00 0.00 0.00 2.85
777 787 2.879103 TTCTAGCCCAAACCAAGAGG 57.121 50.000 0.00 0.00 42.21 3.69
785 795 1.354368 CCAAACCAAGAGGCCTAAGGA 59.646 52.381 21.04 0.00 39.06 3.36
800 810 4.683832 CCTAAGGATCCGCGATATAAAGG 58.316 47.826 8.23 1.96 0.00 3.11
802 812 4.618920 AAGGATCCGCGATATAAAGGTT 57.381 40.909 8.23 0.00 0.00 3.50
805 815 3.120304 GGATCCGCGATATAAAGGTTTGC 60.120 47.826 8.23 0.00 0.00 3.68
819 829 5.885449 AAGGTTTGCTAGAGATGCTCTAT 57.115 39.130 4.77 0.00 41.49 1.98
1075 1322 2.525105 AACCACCTCCTCTCTCTCTC 57.475 55.000 0.00 0.00 0.00 3.20
1076 1323 1.681229 ACCACCTCCTCTCTCTCTCT 58.319 55.000 0.00 0.00 0.00 3.10
1136 1383 1.333177 CTCCCCTCCATACCGAGAAG 58.667 60.000 0.00 0.00 30.97 2.85
1170 1417 4.988716 ACGAGGAGCGGACCACCA 62.989 66.667 0.00 0.00 46.49 4.17
1173 1420 3.316573 GAGGAGCGGACCACCAAGG 62.317 68.421 0.00 0.00 45.67 3.61
1182 1440 4.722700 CCACCAAGGCACCCCTCG 62.723 72.222 0.00 0.00 41.90 4.63
1208 1466 4.284860 CCCGCGCGATCTGATCCA 62.285 66.667 34.63 0.00 0.00 3.41
1217 1475 4.770362 TCTGATCCACCCGCCGGA 62.770 66.667 5.05 0.00 36.84 5.14
1218 1476 4.227134 CTGATCCACCCGCCGGAG 62.227 72.222 5.05 0.00 35.56 4.63
1372 1630 2.673833 GGTAGATTTCGTGATAGGCGG 58.326 52.381 0.00 0.00 0.00 6.13
1456 1714 1.328680 CTGATTTCTGATTCGGTGCGG 59.671 52.381 0.00 0.00 0.00 5.69
1457 1715 0.028110 GATTTCTGATTCGGTGCGGC 59.972 55.000 0.00 0.00 0.00 6.53
1485 1743 2.681778 CAGAGCTGTCGGGGAGGT 60.682 66.667 0.00 0.00 0.00 3.85
1486 1744 2.681778 AGAGCTGTCGGGGAGGTG 60.682 66.667 0.00 0.00 0.00 4.00
1536 1794 3.827876 TGTGGTGTCGGATTAGTGTCTAA 59.172 43.478 0.00 0.00 0.00 2.10
1542 1800 6.183360 GGTGTCGGATTAGTGTCTAATTTTGG 60.183 42.308 3.96 0.00 0.00 3.28
1599 1857 0.931005 GAGCTCGGTTCCGCTTAATG 59.069 55.000 6.35 0.00 36.45 1.90
1668 1927 4.884164 GCTGCTAGATGTATCCTGGTTTTT 59.116 41.667 0.00 0.00 0.00 1.94
1716 1976 4.644954 CGGATGTTTCGGTAGTTTTTAGC 58.355 43.478 0.00 0.00 0.00 3.09
1807 2077 1.476891 TGCTCAGTCACCGTATCCTTC 59.523 52.381 0.00 0.00 0.00 3.46
1957 2227 7.178805 TGTTACCCCTTTTGTTAGTTTTTCTGT 59.821 33.333 0.00 0.00 0.00 3.41
2103 2422 6.494059 ACCTGGAGAAAATATTAGTGGCTTT 58.506 36.000 0.00 0.00 0.00 3.51
2320 2664 6.095580 TGTTTGCCACAGTTTTATTCACTACA 59.904 34.615 0.00 0.00 0.00 2.74
2323 2667 5.144359 GCCACAGTTTTATTCACTACAACG 58.856 41.667 0.00 0.00 0.00 4.10
2341 2685 4.142687 ACAACGTGTTTTCCTCTTTGTGAG 60.143 41.667 0.00 0.00 42.30 3.51
2486 2830 6.401047 TCTGGTAGGATTTGATTAGTACGG 57.599 41.667 0.00 0.00 0.00 4.02
2501 2845 3.861840 AGTACGGACATTGGATGAAGTG 58.138 45.455 0.00 0.00 0.00 3.16
2535 2879 5.878406 ATGGAAGTGGATACTCTACAAGG 57.122 43.478 0.00 0.00 40.12 3.61
2559 2903 3.957497 GCTCAGGAGACTAAGAATGGAGA 59.043 47.826 0.00 0.00 40.21 3.71
2629 2973 7.808856 CAGCTAGTTCGGGTATATTCTAACTTC 59.191 40.741 0.00 0.00 0.00 3.01
2637 2981 9.866655 TCGGGTATATTCTAACTTCCTTAGTTA 57.133 33.333 0.00 0.00 45.22 2.24
2671 3015 7.859325 TCTTTGGCTATATTTGAAGGTACAC 57.141 36.000 0.00 0.00 0.00 2.90
2708 3052 5.127031 TGTTTCCATTTGCTTATAGCCCTTC 59.873 40.000 0.00 0.00 41.51 3.46
2928 3272 9.371136 GTGATGTCAGTATCTTTATTCAGTTCA 57.629 33.333 0.00 0.00 0.00 3.18
2961 3305 8.218338 ACAGTGCTATATCATTTCCTTTTCAG 57.782 34.615 0.00 0.00 0.00 3.02
2976 3320 8.553459 TTCCTTTTCAGTGATCTTACTTCATC 57.447 34.615 0.00 0.00 0.00 2.92
3054 3418 7.704899 AGTTCATGTTTCATGCATCACATATTG 59.295 33.333 13.02 5.93 36.64 1.90
3056 3420 7.773149 TCATGTTTCATGCATCACATATTGAA 58.227 30.769 13.02 3.72 37.92 2.69
3067 3431 6.736794 GCATCACATATTGAATCAACCCCTTC 60.737 42.308 0.00 0.00 37.92 3.46
3111 3475 4.675408 GCTTATTAAACTTGTGCAGAGGGC 60.675 45.833 0.00 0.00 45.13 5.19
3147 3511 9.961265 TTAGAGACTAATGGTGAAATACATACG 57.039 33.333 0.00 0.00 0.00 3.06
3199 3563 6.249951 TGTATGTTGCTTTTGTAGGGGTATT 58.750 36.000 0.00 0.00 0.00 1.89
3205 3569 9.127277 TGTTGCTTTTGTAGGGGTATTATTATC 57.873 33.333 0.00 0.00 0.00 1.75
3304 3668 4.082125 ACAGGATTCTTTTGGGTCATGTC 58.918 43.478 0.00 0.00 30.78 3.06
3314 3678 6.262273 TCTTTTGGGTCATGTCTGAAACTAAC 59.738 38.462 0.00 0.00 31.85 2.34
3315 3679 4.015872 TGGGTCATGTCTGAAACTAACC 57.984 45.455 0.00 0.00 31.85 2.85
3338 3702 3.030291 TGACATGGTTTTCATATGGGCC 58.970 45.455 2.13 0.00 34.12 5.80
3365 3729 8.611757 GCCCAATTTCTATAAAATTCGCAAATT 58.388 29.630 0.00 0.00 36.64 1.82
3416 3780 7.953005 TTTTGTTTCCTATATGATTCCTGCA 57.047 32.000 0.00 0.00 0.00 4.41
3429 3793 1.368209 CCTGCATTGCAAACAGGCA 59.632 52.632 28.76 21.87 44.16 4.75
3436 3800 0.031857 TTGCAAACAGGCATTGTCCG 59.968 50.000 0.00 0.00 44.48 4.79
3516 4003 3.010584 ACAACCTCTGGAATTAGCACCAT 59.989 43.478 0.00 0.00 35.54 3.55
3540 4029 5.888161 TGTATTGTCATCTAGTCAGCTCTGA 59.112 40.000 0.00 0.00 37.24 3.27
3554 4044 4.830046 TCAGCTCTGACTTTCTACTCAAGT 59.170 41.667 0.00 0.00 37.18 3.16
3605 4095 9.240734 GCTTTCCTTCATATATGGAATTCTCAT 57.759 33.333 12.78 9.59 40.19 2.90
3829 4319 6.934645 TGAGTATGCTGCTGTTAGTTTTAACT 59.065 34.615 0.00 0.29 39.90 2.24
3830 4320 7.095229 TGAGTATGCTGCTGTTAGTTTTAACTG 60.095 37.037 5.41 0.73 39.90 3.16
3901 4391 0.764890 TTGCGGGCCTATTATCTGCT 59.235 50.000 0.84 0.00 34.19 4.24
4062 4561 1.026718 AATTGCGCAGGTAGACAGGC 61.027 55.000 11.31 0.00 0.00 4.85
4187 4687 0.773644 ACCAGGACAATGCTTCCACT 59.226 50.000 0.00 0.00 35.33 4.00
4242 4742 3.784338 TGCAGTGCTGAAAAAGAAAAGG 58.216 40.909 17.60 0.00 0.00 3.11
4425 4932 3.184581 CGAAACTACTGTCAAGGACAAGC 59.815 47.826 0.33 0.00 42.26 4.01
4455 4962 4.698304 TCAAAAGACGGATTACAATGGGAC 59.302 41.667 0.00 0.00 0.00 4.46
4554 5061 5.882557 CACAAGCTACCTACAATTGAAGGAT 59.117 40.000 13.59 0.00 36.66 3.24
4594 5101 5.937111 TGAAGCTACTTCTTTGGTTAGGTT 58.063 37.500 8.66 0.00 40.73 3.50
4625 5132 3.261897 TGGGTTCTGGAAATGAGAGAGAC 59.738 47.826 0.00 0.00 0.00 3.36
4629 5136 5.486526 GTTCTGGAAATGAGAGAGACACAT 58.513 41.667 0.00 0.00 0.00 3.21
4788 5295 5.352569 ACAAAAAGATACATTGAGGAGCTCG 59.647 40.000 7.83 0.00 32.35 5.03
4991 5498 1.443828 GATGAGAAGAGGGCGTCCC 59.556 63.158 0.08 4.26 45.90 4.46
5094 5601 9.278978 TGCAAAGAGACACATACATTAAGTTAA 57.721 29.630 0.00 0.00 0.00 2.01
5129 5831 8.892723 TGTAATGATGGTACATGTCATTCTTTC 58.107 33.333 17.47 10.67 42.30 2.62
5132 5834 8.680903 AATGATGGTACATGTCATTCTTTCTTC 58.319 33.333 0.00 0.00 42.30 2.87
5179 5881 3.316308 GGATATTGTGCCCTTTGTAGCTG 59.684 47.826 0.00 0.00 0.00 4.24
5195 5897 4.332543 TGTAGCTGTGTTCTCAAAACAGTG 59.667 41.667 8.11 0.00 42.65 3.66
5211 5913 8.527810 TCAAAACAGTGGAGACTTAAACAAAAT 58.472 29.630 0.00 0.00 0.00 1.82
5355 6142 8.848182 ACTACCTCTGTTCCTAAATATAAGACG 58.152 37.037 0.00 0.00 0.00 4.18
5606 6393 4.394920 ACATGTTGGCCTCACTTTAATACG 59.605 41.667 3.32 0.00 0.00 3.06
5694 6481 2.648059 AGACTTGCCTTGCCATATCAC 58.352 47.619 0.00 0.00 0.00 3.06
5697 6484 0.679321 TTGCCTTGCCATATCACGCA 60.679 50.000 0.00 0.00 0.00 5.24
5762 6549 1.951209 AATGGGGAAAGCCGGAAAAT 58.049 45.000 5.05 0.00 33.83 1.82
5764 6551 1.723288 TGGGGAAAGCCGGAAAATTT 58.277 45.000 5.05 0.00 33.83 1.82
5788 6575 9.472361 TTTCATTACGATAGCCTAATTAGACAC 57.528 33.333 14.28 3.33 42.67 3.67
5806 6593 1.888512 CACAGTTAATGCAACCTGCCT 59.111 47.619 0.00 0.00 44.23 4.75
5842 6756 4.519213 AGCCGTTATTAGTAATTGTGGCA 58.481 39.130 23.07 0.00 42.31 4.92
5848 6762 8.015087 CCGTTATTAGTAATTGTGGCATATGTG 58.985 37.037 4.29 0.00 0.00 3.21
5884 6798 1.000274 TGTCTCACCAGATGTCACACG 60.000 52.381 0.00 0.00 0.00 4.49
5897 6811 5.408604 AGATGTCACACGTTATTTCTTGGAC 59.591 40.000 0.00 0.00 0.00 4.02
6057 6971 1.845809 GCAGTGCTGTGGAAGTTCCG 61.846 60.000 17.13 4.24 40.17 4.30
6101 7015 3.883489 CTGATCATGTAGGACCACGTAGA 59.117 47.826 0.00 0.00 0.00 2.59
6301 7215 0.326264 GCTGAGAAGAAAGGAGGGCA 59.674 55.000 0.00 0.00 0.00 5.36
6302 7216 1.064832 GCTGAGAAGAAAGGAGGGCAT 60.065 52.381 0.00 0.00 0.00 4.40
6303 7217 2.171448 GCTGAGAAGAAAGGAGGGCATA 59.829 50.000 0.00 0.00 0.00 3.14
6304 7218 3.181446 GCTGAGAAGAAAGGAGGGCATAT 60.181 47.826 0.00 0.00 0.00 1.78
6305 7219 4.040952 GCTGAGAAGAAAGGAGGGCATATA 59.959 45.833 0.00 0.00 0.00 0.86
6306 7220 5.792741 CTGAGAAGAAAGGAGGGCATATAG 58.207 45.833 0.00 0.00 0.00 1.31
6307 7221 5.467738 TGAGAAGAAAGGAGGGCATATAGA 58.532 41.667 0.00 0.00 0.00 1.98
6308 7222 5.905331 TGAGAAGAAAGGAGGGCATATAGAA 59.095 40.000 0.00 0.00 0.00 2.10
6309 7223 6.386927 TGAGAAGAAAGGAGGGCATATAGAAA 59.613 38.462 0.00 0.00 0.00 2.52
6310 7224 6.596621 AGAAGAAAGGAGGGCATATAGAAAC 58.403 40.000 0.00 0.00 0.00 2.78
6311 7225 5.975988 AGAAAGGAGGGCATATAGAAACA 57.024 39.130 0.00 0.00 0.00 2.83
6312 7226 5.934781 AGAAAGGAGGGCATATAGAAACAG 58.065 41.667 0.00 0.00 0.00 3.16
6313 7227 3.778954 AGGAGGGCATATAGAAACAGC 57.221 47.619 0.00 0.00 0.00 4.40
6314 7228 3.321950 AGGAGGGCATATAGAAACAGCT 58.678 45.455 0.00 0.00 0.00 4.24
6315 7229 3.072184 AGGAGGGCATATAGAAACAGCTG 59.928 47.826 13.48 13.48 0.00 4.24
6316 7230 3.071602 GGAGGGCATATAGAAACAGCTGA 59.928 47.826 23.35 0.00 0.00 4.26
6317 7231 4.314121 GAGGGCATATAGAAACAGCTGAG 58.686 47.826 23.35 0.00 0.00 3.35
6318 7232 3.969976 AGGGCATATAGAAACAGCTGAGA 59.030 43.478 23.35 0.00 0.00 3.27
6319 7233 4.410228 AGGGCATATAGAAACAGCTGAGAA 59.590 41.667 23.35 0.83 0.00 2.87
6320 7234 4.754114 GGGCATATAGAAACAGCTGAGAAG 59.246 45.833 23.35 0.00 0.00 2.85
6321 7235 5.453903 GGGCATATAGAAACAGCTGAGAAGA 60.454 44.000 23.35 2.55 0.00 2.87
6322 7236 6.051717 GGCATATAGAAACAGCTGAGAAGAA 58.948 40.000 23.35 1.05 0.00 2.52
6323 7237 6.540189 GGCATATAGAAACAGCTGAGAAGAAA 59.460 38.462 23.35 0.83 0.00 2.52
6324 7238 7.254727 GGCATATAGAAACAGCTGAGAAGAAAG 60.255 40.741 23.35 4.22 0.00 2.62
6325 7239 7.254727 GCATATAGAAACAGCTGAGAAGAAAGG 60.255 40.741 23.35 4.52 0.00 3.11
6326 7240 4.696479 AGAAACAGCTGAGAAGAAAGGA 57.304 40.909 23.35 0.00 0.00 3.36
6327 7241 4.640364 AGAAACAGCTGAGAAGAAAGGAG 58.360 43.478 23.35 0.00 0.00 3.69
6328 7242 3.415457 AACAGCTGAGAAGAAAGGAGG 57.585 47.619 23.35 0.00 0.00 4.30
6329 7243 1.627834 ACAGCTGAGAAGAAAGGAGGG 59.372 52.381 23.35 0.00 0.00 4.30
6330 7244 0.617935 AGCTGAGAAGAAAGGAGGGC 59.382 55.000 0.00 0.00 0.00 5.19
6361 7275 4.437239 ACAGCTGATAACAAGGAGATTCG 58.563 43.478 23.35 0.00 0.00 3.34
6401 7315 5.653507 GATATTTGCAGAACTGATGCCAAA 58.346 37.500 5.97 6.84 43.18 3.28
6404 7318 2.030371 TGCAGAACTGATGCCAAAACA 58.970 42.857 5.97 0.00 43.18 2.83
6581 7495 3.583228 TCTCAAGGTGGGTTTACTCTCA 58.417 45.455 0.00 0.00 0.00 3.27
6601 7515 3.157881 CACAGTTCCTCACTCACTCCTA 58.842 50.000 0.00 0.00 30.92 2.94
6695 7611 0.660300 CACAGCTTTCGCCGGAAAAC 60.660 55.000 5.05 0.00 41.38 2.43
6731 7649 2.827921 CCCCCTTTTCAACTCATTGAGG 59.172 50.000 17.66 1.40 45.54 3.86
6732 7650 3.500289 CCCCCTTTTCAACTCATTGAGGA 60.500 47.826 17.66 3.79 45.54 3.71
6733 7651 4.347607 CCCCTTTTCAACTCATTGAGGAT 58.652 43.478 17.66 3.72 45.54 3.24
6774 7696 3.525199 AGCTCAGTTATTCCCATCCTGTT 59.475 43.478 0.00 0.00 0.00 3.16
6780 7702 6.214615 TCAGTTATTCCCATCCTGTTCTGTTA 59.785 38.462 0.00 0.00 0.00 2.41
6811 7740 5.240403 GGATTGCTCACTTTCTTCACTCTTT 59.760 40.000 0.00 0.00 0.00 2.52
6822 7751 4.326826 TCTTCACTCTTTAATGGTGCTGG 58.673 43.478 0.00 0.00 0.00 4.85
6988 7917 2.266055 GCACAGGGGAGAGGTTCG 59.734 66.667 0.00 0.00 0.00 3.95
7086 8018 0.108756 TTGTGGACGACGAACACACA 60.109 50.000 22.09 17.03 43.99 3.72
7175 8110 1.828595 TGCAATGCAATGCCTTCTCAT 59.171 42.857 23.47 0.00 45.83 2.90
7184 8119 2.496899 TGCCTTCTCATCTGGTTTCC 57.503 50.000 0.00 0.00 0.00 3.13
7201 8136 3.763097 TTCCTTCGCAGCATGTATTTG 57.237 42.857 0.00 0.00 39.31 2.32
7254 8196 4.496010 CGTTCGAGGTAGGTCATACTGAAG 60.496 50.000 0.00 0.00 34.56 3.02
7303 8283 5.601662 TCGGCAATGGAATAAAAACACAAA 58.398 33.333 0.00 0.00 0.00 2.83
7305 8285 6.708054 TCGGCAATGGAATAAAAACACAAAAT 59.292 30.769 0.00 0.00 0.00 1.82
7306 8286 7.227512 TCGGCAATGGAATAAAAACACAAAATT 59.772 29.630 0.00 0.00 0.00 1.82
7309 8289 9.384682 GCAATGGAATAAAAACACAAAATTGAG 57.615 29.630 0.00 0.00 0.00 3.02
7310 8290 9.384682 CAATGGAATAAAAACACAAAATTGAGC 57.615 29.630 0.00 0.00 0.00 4.26
7311 8291 7.171447 TGGAATAAAAACACAAAATTGAGCG 57.829 32.000 0.00 0.00 0.00 5.03
7312 8292 6.980978 TGGAATAAAAACACAAAATTGAGCGA 59.019 30.769 0.00 0.00 0.00 4.93
7313 8293 7.655328 TGGAATAAAAACACAAAATTGAGCGAT 59.345 29.630 0.00 0.00 0.00 4.58
7314 8294 8.495148 GGAATAAAAACACAAAATTGAGCGATT 58.505 29.630 0.00 0.00 0.00 3.34
7315 8295 9.862585 GAATAAAAACACAAAATTGAGCGATTT 57.137 25.926 0.00 0.00 0.00 2.17
7333 8313 5.511377 GCGATTTTGCGATTTTGAATCTGTA 59.489 36.000 0.00 0.00 0.00 2.74
7335 8315 6.290748 CGATTTTGCGATTTTGAATCTGTAGC 60.291 38.462 0.00 0.00 0.00 3.58
7350 8330 3.066900 TCTGTAGCCGCAGAAGATTACTC 59.933 47.826 5.47 0.00 41.93 2.59
7351 8331 2.100916 TGTAGCCGCAGAAGATTACTCC 59.899 50.000 0.00 0.00 0.00 3.85
7369 8351 5.101648 ACTCCCTGTACTCTACTGTAGTC 57.898 47.826 14.11 5.30 0.00 2.59
7387 8369 1.728971 GTCGCACTCTGTGAAAGATGG 59.271 52.381 1.52 0.00 38.76 3.51
7395 8377 2.086869 CTGTGAAAGATGGCACGGAAT 58.913 47.619 0.00 0.00 42.56 3.01
7397 8379 3.680490 TGTGAAAGATGGCACGGAATTA 58.320 40.909 0.00 0.00 37.83 1.40
7398 8380 3.438781 TGTGAAAGATGGCACGGAATTAC 59.561 43.478 0.00 0.00 37.83 1.89
7399 8381 3.689649 GTGAAAGATGGCACGGAATTACT 59.310 43.478 0.00 0.00 0.00 2.24
7400 8382 3.938963 TGAAAGATGGCACGGAATTACTC 59.061 43.478 0.00 0.00 0.00 2.59
7403 8385 3.798202 AGATGGCACGGAATTACTCTTC 58.202 45.455 0.00 0.00 0.00 2.87
7437 8419 8.145767 TGAGAAACAGAAATTACTCGACCTTTA 58.854 33.333 0.00 0.00 0.00 1.85
7440 8422 6.663944 ACAGAAATTACTCGACCTTTATGC 57.336 37.500 0.00 0.00 0.00 3.14
7503 8485 1.405391 GCCCATTTGTTACACATGGCC 60.405 52.381 21.41 9.98 39.55 5.36
7504 8486 1.135141 CCCATTTGTTACACATGGCCG 60.135 52.381 21.41 8.31 39.55 6.13
7523 8505 1.512771 CGAAACAGCGCTGAAAACAAC 59.487 47.619 42.03 22.16 0.00 3.32
7534 8516 2.755103 CTGAAAACAACTAGCCCATCCC 59.245 50.000 0.00 0.00 0.00 3.85
7536 8518 2.990740 AAACAACTAGCCCATCCCAA 57.009 45.000 0.00 0.00 0.00 4.12
7542 8528 1.542628 TAGCCCATCCCAACCCACA 60.543 57.895 0.00 0.00 0.00 4.17
7546 8532 1.606313 CCATCCCAACCCACACCAC 60.606 63.158 0.00 0.00 0.00 4.16
7567 8553 2.421529 CCGCAGGCCTTAAAAGAGGTAT 60.422 50.000 0.00 0.00 46.14 2.73
7570 8556 4.135306 GCAGGCCTTAAAAGAGGTATACC 58.865 47.826 14.54 14.54 39.11 2.73
7571 8557 4.384868 GCAGGCCTTAAAAGAGGTATACCA 60.385 45.833 23.87 0.00 39.11 3.25
7576 8564 5.631717 GCCTTAAAAGAGGTATACCAGGCTT 60.632 44.000 27.86 21.73 40.25 4.35
7584 8572 2.775960 GGTATACCAGGCTTACCCAGTT 59.224 50.000 17.44 0.00 36.11 3.16
7611 8632 3.691342 TAACGTGGGCTGCTCGCT 61.691 61.111 11.77 0.00 39.13 4.93
7612 8633 3.642778 TAACGTGGGCTGCTCGCTC 62.643 63.158 11.77 0.00 40.51 5.03
7638 8659 4.598894 CCTGGCGAGGGCGATGAG 62.599 72.222 6.92 0.00 41.24 2.90
7757 8803 3.157252 GGGATCTGCGCTGAGGGA 61.157 66.667 21.74 6.60 0.00 4.20
7760 8806 1.886777 GATCTGCGCTGAGGGAAGC 60.887 63.158 21.74 0.00 39.94 3.86
7761 8807 2.308968 GATCTGCGCTGAGGGAAGCT 62.309 60.000 21.74 3.59 41.24 3.74
7762 8808 1.045350 ATCTGCGCTGAGGGAAGCTA 61.045 55.000 21.74 0.00 41.24 3.32
7763 8809 1.227205 CTGCGCTGAGGGAAGCTAG 60.227 63.158 9.73 0.00 41.24 3.42
7764 8810 2.107953 GCGCTGAGGGAAGCTAGG 59.892 66.667 0.00 0.00 41.24 3.02
7765 8811 2.427245 GCGCTGAGGGAAGCTAGGA 61.427 63.158 0.00 0.00 41.24 2.94
7766 8812 1.739049 CGCTGAGGGAAGCTAGGAG 59.261 63.158 0.00 0.00 41.24 3.69
7767 8813 0.753479 CGCTGAGGGAAGCTAGGAGA 60.753 60.000 0.00 0.00 41.24 3.71
7768 8814 1.039856 GCTGAGGGAAGCTAGGAGAG 58.960 60.000 0.00 0.00 40.20 3.20
7769 8815 1.703411 CTGAGGGAAGCTAGGAGAGG 58.297 60.000 0.00 0.00 0.00 3.69
7770 8816 1.216678 CTGAGGGAAGCTAGGAGAGGA 59.783 57.143 0.00 0.00 0.00 3.71
7860 8907 9.584839 CGACTTTTGATTTTGAAATGGATTTTC 57.415 29.630 0.00 0.00 43.42 2.29
8022 9070 9.733556 TCCATGATGTAAGGCGTATTATAATTT 57.266 29.630 2.68 0.00 0.00 1.82
8158 9206 8.812972 TGTCATATAAATTATACTTCCTCCGCT 58.187 33.333 0.00 0.00 0.00 5.52
8160 9208 9.031537 TCATATAAATTATACTTCCTCCGCTCA 57.968 33.333 0.00 0.00 0.00 4.26
8194 9243 5.927115 GTCGGAGGAATGGATGTATCTAAAC 59.073 44.000 0.00 0.00 0.00 2.01
8289 9365 9.778741 AGAGTAATTGTTCATCAAACTCTTGTA 57.221 29.630 8.29 0.00 44.80 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 6.149474 GGCTGAGTAATTAACGCATCCATTAT 59.851 38.462 0.00 0.00 42.00 1.28
80 81 0.526211 GCCCCACGATCCAAAAGAAC 59.474 55.000 0.00 0.00 0.00 3.01
117 118 3.681593 CCGGGTAAGTCATGGAGAAAAA 58.318 45.455 0.00 0.00 0.00 1.94
145 153 5.881443 GGTAGACGTCTGCCTGACTATATAT 59.119 44.000 36.62 6.73 44.14 0.86
203 211 1.852942 GGCGCAATGATCTAGAACGA 58.147 50.000 10.83 0.00 0.00 3.85
209 217 1.071299 ATGGCGGCGCAATGATCTA 59.929 52.632 34.36 8.85 0.00 1.98
262 270 2.659016 CTGCTGTCCCTTCTCGCA 59.341 61.111 0.00 0.00 0.00 5.10
456 466 4.270392 CACATACGGTGCAACGGA 57.730 55.556 30.15 23.22 41.36 4.69
491 501 5.598416 ACATGAATTCTACCACGATCTCA 57.402 39.130 7.05 0.00 0.00 3.27
521 531 4.574674 ACAGATTGAATCTAGGGCACAA 57.425 40.909 7.46 0.00 37.58 3.33
558 568 9.661563 AACATAGATTAAACTAATCACGTGGAA 57.338 29.630 17.00 0.00 45.41 3.53
580 590 8.559536 CAAAGTAAATCATGACGGCTATAACAT 58.440 33.333 0.00 0.00 0.00 2.71
602 612 9.769093 CAAGATTTAACCCGAATAAGTACAAAG 57.231 33.333 0.00 0.00 0.00 2.77
618 628 7.342318 TGAGCACGTTACTACAAGATTTAAC 57.658 36.000 0.00 0.00 0.00 2.01
636 646 7.388776 TGCAGAGGATGTTAAATATATGAGCAC 59.611 37.037 0.00 0.00 0.00 4.40
649 659 0.614812 TGCTGCTGCAGAGGATGTTA 59.385 50.000 32.30 5.22 45.31 2.41
660 670 2.671619 TTTACCCCGTGCTGCTGC 60.672 61.111 8.89 8.89 40.20 5.25
661 671 1.169661 TTGTTTACCCCGTGCTGCTG 61.170 55.000 0.00 0.00 0.00 4.41
662 672 0.466555 TTTGTTTACCCCGTGCTGCT 60.467 50.000 0.00 0.00 0.00 4.24
663 673 0.318360 GTTTGTTTACCCCGTGCTGC 60.318 55.000 0.00 0.00 0.00 5.25
664 674 0.312729 GGTTTGTTTACCCCGTGCTG 59.687 55.000 0.00 0.00 31.71 4.41
665 675 0.106619 TGGTTTGTTTACCCCGTGCT 60.107 50.000 0.00 0.00 37.39 4.40
666 676 0.745468 TTGGTTTGTTTACCCCGTGC 59.255 50.000 0.00 0.00 37.39 5.34
667 677 1.067364 GGTTGGTTTGTTTACCCCGTG 59.933 52.381 0.00 0.00 37.39 4.94
668 678 1.401761 GGTTGGTTTGTTTACCCCGT 58.598 50.000 0.00 0.00 37.39 5.28
669 679 0.311477 CGGTTGGTTTGTTTACCCCG 59.689 55.000 0.00 0.00 36.91 5.73
670 680 1.689984 TCGGTTGGTTTGTTTACCCC 58.310 50.000 0.00 0.00 37.39 4.95
671 681 3.570975 AGAATCGGTTGGTTTGTTTACCC 59.429 43.478 0.00 0.00 37.39 3.69
672 682 4.276431 TCAGAATCGGTTGGTTTGTTTACC 59.724 41.667 0.00 0.00 38.73 2.85
673 683 5.427036 TCAGAATCGGTTGGTTTGTTTAC 57.573 39.130 0.00 0.00 0.00 2.01
674 684 6.488683 AGAATCAGAATCGGTTGGTTTGTTTA 59.511 34.615 0.00 0.00 0.00 2.01
675 685 5.301805 AGAATCAGAATCGGTTGGTTTGTTT 59.698 36.000 0.00 0.00 0.00 2.83
676 686 4.827284 AGAATCAGAATCGGTTGGTTTGTT 59.173 37.500 0.00 0.00 0.00 2.83
677 687 4.398319 AGAATCAGAATCGGTTGGTTTGT 58.602 39.130 0.00 0.00 0.00 2.83
678 688 5.048782 TGAAGAATCAGAATCGGTTGGTTTG 60.049 40.000 0.00 0.00 0.00 2.93
679 689 5.070001 TGAAGAATCAGAATCGGTTGGTTT 58.930 37.500 0.00 0.00 0.00 3.27
680 690 4.651778 TGAAGAATCAGAATCGGTTGGTT 58.348 39.130 0.00 0.00 0.00 3.67
681 691 4.286297 TGAAGAATCAGAATCGGTTGGT 57.714 40.909 0.00 0.00 0.00 3.67
695 705 2.636830 CAGCCGTGGATTCTGAAGAAT 58.363 47.619 5.23 5.23 46.54 2.40
696 706 1.945819 GCAGCCGTGGATTCTGAAGAA 60.946 52.381 0.00 0.00 38.56 2.52
697 707 0.391661 GCAGCCGTGGATTCTGAAGA 60.392 55.000 0.00 0.00 0.00 2.87
698 708 0.674581 TGCAGCCGTGGATTCTGAAG 60.675 55.000 0.00 0.00 0.00 3.02
699 709 0.674581 CTGCAGCCGTGGATTCTGAA 60.675 55.000 0.00 0.00 0.00 3.02
700 710 1.078918 CTGCAGCCGTGGATTCTGA 60.079 57.895 0.00 0.00 0.00 3.27
701 711 2.758089 GCTGCAGCCGTGGATTCTG 61.758 63.158 28.76 0.00 34.31 3.02
702 712 2.437359 GCTGCAGCCGTGGATTCT 60.437 61.111 28.76 0.00 34.31 2.40
703 713 2.334946 TTGCTGCAGCCGTGGATTC 61.335 57.895 34.64 5.72 41.18 2.52
704 714 2.282391 TTGCTGCAGCCGTGGATT 60.282 55.556 34.64 0.00 41.18 3.01
705 715 3.058160 GTTGCTGCAGCCGTGGAT 61.058 61.111 34.64 0.00 41.18 3.41
706 716 3.772853 AAGTTGCTGCAGCCGTGGA 62.773 57.895 34.64 14.24 41.18 4.02
707 717 2.737932 GAAAGTTGCTGCAGCCGTGG 62.738 60.000 34.64 0.00 41.18 4.94
708 718 1.370900 GAAAGTTGCTGCAGCCGTG 60.371 57.895 34.64 0.00 41.18 4.94
709 719 1.789078 CTGAAAGTTGCTGCAGCCGT 61.789 55.000 34.64 16.43 41.18 5.68
710 720 1.081641 CTGAAAGTTGCTGCAGCCG 60.082 57.895 34.64 11.17 41.18 5.52
711 721 1.174712 TCCTGAAAGTTGCTGCAGCC 61.175 55.000 34.64 20.80 41.18 4.85
712 722 0.670162 TTCCTGAAAGTTGCTGCAGC 59.330 50.000 31.89 31.89 42.50 5.25
713 723 2.094854 GGATTCCTGAAAGTTGCTGCAG 60.095 50.000 10.11 10.11 0.00 4.41
714 724 1.888512 GGATTCCTGAAAGTTGCTGCA 59.111 47.619 0.00 0.00 0.00 4.41
715 725 1.888512 TGGATTCCTGAAAGTTGCTGC 59.111 47.619 3.95 0.00 0.00 5.25
716 726 2.490903 CCTGGATTCCTGAAAGTTGCTG 59.509 50.000 10.93 0.00 0.00 4.41
717 727 2.800250 CCTGGATTCCTGAAAGTTGCT 58.200 47.619 10.93 0.00 0.00 3.91
718 728 1.203287 GCCTGGATTCCTGAAAGTTGC 59.797 52.381 10.93 1.54 0.00 4.17
719 729 1.821136 GGCCTGGATTCCTGAAAGTTG 59.179 52.381 10.93 0.00 0.00 3.16
720 730 1.614317 CGGCCTGGATTCCTGAAAGTT 60.614 52.381 10.93 0.00 0.00 2.66
721 731 0.035056 CGGCCTGGATTCCTGAAAGT 60.035 55.000 10.93 0.00 0.00 2.66
722 732 0.253044 TCGGCCTGGATTCCTGAAAG 59.747 55.000 10.93 0.00 0.00 2.62
723 733 0.695924 TTCGGCCTGGATTCCTGAAA 59.304 50.000 10.93 0.00 0.00 2.69
724 734 0.918983 ATTCGGCCTGGATTCCTGAA 59.081 50.000 10.93 0.00 0.00 3.02
725 735 0.469917 GATTCGGCCTGGATTCCTGA 59.530 55.000 10.93 0.00 0.00 3.86
726 736 0.882042 CGATTCGGCCTGGATTCCTG 60.882 60.000 0.00 3.27 0.00 3.86
727 737 1.048724 TCGATTCGGCCTGGATTCCT 61.049 55.000 6.18 0.00 0.00 3.36
728 738 0.035458 ATCGATTCGGCCTGGATTCC 59.965 55.000 6.18 0.00 0.00 3.01
729 739 1.801178 GAATCGATTCGGCCTGGATTC 59.199 52.381 21.57 10.93 37.08 2.52
730 740 1.417890 AGAATCGATTCGGCCTGGATT 59.582 47.619 27.69 8.45 41.56 3.01
731 741 1.001406 GAGAATCGATTCGGCCTGGAT 59.999 52.381 27.69 11.52 41.56 3.41
732 742 0.389391 GAGAATCGATTCGGCCTGGA 59.611 55.000 27.69 0.00 41.56 3.86
733 743 0.104855 TGAGAATCGATTCGGCCTGG 59.895 55.000 27.69 0.00 41.56 4.45
734 744 2.160822 ATGAGAATCGATTCGGCCTG 57.839 50.000 27.69 0.00 41.56 4.85
735 745 4.336889 TTTATGAGAATCGATTCGGCCT 57.663 40.909 27.69 19.52 41.56 5.19
736 746 5.613358 AATTTATGAGAATCGATTCGGCC 57.387 39.130 27.69 21.26 41.56 6.13
737 747 6.892691 AGAAATTTATGAGAATCGATTCGGC 58.107 36.000 27.69 23.62 41.56 5.54
738 748 8.165428 GCTAGAAATTTATGAGAATCGATTCGG 58.835 37.037 27.69 5.82 41.56 4.30
739 749 8.165428 GGCTAGAAATTTATGAGAATCGATTCG 58.835 37.037 27.69 12.46 41.56 3.34
740 750 8.447053 GGGCTAGAAATTTATGAGAATCGATTC 58.553 37.037 27.16 27.16 38.61 2.52
741 751 7.939039 TGGGCTAGAAATTTATGAGAATCGATT 59.061 33.333 11.20 11.20 38.61 3.34
742 752 7.453393 TGGGCTAGAAATTTATGAGAATCGAT 58.547 34.615 0.00 0.00 38.61 3.59
743 753 6.826668 TGGGCTAGAAATTTATGAGAATCGA 58.173 36.000 0.00 0.00 38.61 3.59
744 754 7.496529 TTGGGCTAGAAATTTATGAGAATCG 57.503 36.000 0.00 0.00 38.61 3.34
745 755 8.138074 GGTTTGGGCTAGAAATTTATGAGAATC 58.862 37.037 0.00 0.00 0.00 2.52
746 756 7.619302 TGGTTTGGGCTAGAAATTTATGAGAAT 59.381 33.333 0.00 0.00 0.00 2.40
747 757 6.951198 TGGTTTGGGCTAGAAATTTATGAGAA 59.049 34.615 0.00 0.00 0.00 2.87
748 758 6.489603 TGGTTTGGGCTAGAAATTTATGAGA 58.510 36.000 0.00 0.00 0.00 3.27
749 759 6.773976 TGGTTTGGGCTAGAAATTTATGAG 57.226 37.500 0.00 0.00 0.00 2.90
750 760 6.951198 TCTTGGTTTGGGCTAGAAATTTATGA 59.049 34.615 0.00 0.00 0.00 2.15
751 761 7.169158 TCTTGGTTTGGGCTAGAAATTTATG 57.831 36.000 0.00 0.00 0.00 1.90
752 762 6.381133 CCTCTTGGTTTGGGCTAGAAATTTAT 59.619 38.462 0.00 0.00 0.00 1.40
753 763 5.714806 CCTCTTGGTTTGGGCTAGAAATTTA 59.285 40.000 0.00 0.00 0.00 1.40
754 764 4.528206 CCTCTTGGTTTGGGCTAGAAATTT 59.472 41.667 0.00 0.00 0.00 1.82
755 765 4.089361 CCTCTTGGTTTGGGCTAGAAATT 58.911 43.478 0.00 0.00 0.00 1.82
756 766 3.701664 CCTCTTGGTTTGGGCTAGAAAT 58.298 45.455 0.00 0.00 0.00 2.17
757 767 2.817839 GCCTCTTGGTTTGGGCTAGAAA 60.818 50.000 0.00 0.00 41.20 2.52
758 768 1.271926 GCCTCTTGGTTTGGGCTAGAA 60.272 52.381 0.00 0.00 41.20 2.10
759 769 0.328258 GCCTCTTGGTTTGGGCTAGA 59.672 55.000 0.00 0.00 41.20 2.43
760 770 0.681243 GGCCTCTTGGTTTGGGCTAG 60.681 60.000 0.00 0.00 43.62 3.42
761 771 1.382629 GGCCTCTTGGTTTGGGCTA 59.617 57.895 0.00 0.00 43.62 3.93
762 772 2.118294 GGCCTCTTGGTTTGGGCT 59.882 61.111 0.00 0.00 43.62 5.19
763 773 0.251608 TTAGGCCTCTTGGTTTGGGC 60.252 55.000 9.68 0.00 45.34 5.36
764 774 1.616994 CCTTAGGCCTCTTGGTTTGGG 60.617 57.143 9.68 0.00 35.27 4.12
765 775 1.354368 TCCTTAGGCCTCTTGGTTTGG 59.646 52.381 9.68 1.00 35.27 3.28
766 776 2.879103 TCCTTAGGCCTCTTGGTTTG 57.121 50.000 9.68 0.00 35.27 2.93
767 777 2.242452 GGATCCTTAGGCCTCTTGGTTT 59.758 50.000 9.68 2.63 35.27 3.27
768 778 1.847088 GGATCCTTAGGCCTCTTGGTT 59.153 52.381 9.68 5.12 35.27 3.67
769 779 1.512735 GGATCCTTAGGCCTCTTGGT 58.487 55.000 9.68 0.00 35.27 3.67
770 780 0.394565 CGGATCCTTAGGCCTCTTGG 59.605 60.000 9.68 10.70 0.00 3.61
771 781 0.250081 GCGGATCCTTAGGCCTCTTG 60.250 60.000 9.68 0.00 0.00 3.02
772 782 1.749334 CGCGGATCCTTAGGCCTCTT 61.749 60.000 9.68 0.00 0.00 2.85
773 783 2.203771 CGCGGATCCTTAGGCCTCT 61.204 63.158 9.68 0.00 0.00 3.69
774 784 1.536943 ATCGCGGATCCTTAGGCCTC 61.537 60.000 9.68 0.00 0.00 4.70
775 785 0.251653 TATCGCGGATCCTTAGGCCT 60.252 55.000 11.78 11.78 0.00 5.19
776 786 0.824759 ATATCGCGGATCCTTAGGCC 59.175 55.000 10.75 0.00 0.00 5.19
777 787 3.795623 TTATATCGCGGATCCTTAGGC 57.204 47.619 10.75 4.64 0.00 3.93
785 795 3.740115 AGCAAACCTTTATATCGCGGAT 58.260 40.909 6.13 2.54 0.00 4.18
883 894 3.335356 ATTGGGGTGAGCGAGGCAG 62.335 63.158 0.00 0.00 0.00 4.85
884 895 3.329542 GATTGGGGTGAGCGAGGCA 62.330 63.158 0.00 0.00 0.00 4.75
885 896 2.514824 GATTGGGGTGAGCGAGGC 60.515 66.667 0.00 0.00 0.00 4.70
886 897 0.035056 AAAGATTGGGGTGAGCGAGG 60.035 55.000 0.00 0.00 0.00 4.63
1089 1336 1.335132 TGGTGCGATAGGGAAGGGTC 61.335 60.000 0.00 0.00 0.00 4.46
1136 1383 2.659279 CTCGTTTGCTTCGTCTCTTCTC 59.341 50.000 0.00 0.00 0.00 2.87
1192 1450 3.032609 GTGGATCAGATCGCGCGG 61.033 66.667 31.69 14.23 0.00 6.46
1233 1491 3.063704 CCGCAGCATTGGCCTGAA 61.064 61.111 3.32 0.00 42.56 3.02
1327 1585 2.825086 ACAACCGCGAAATAAGCATC 57.175 45.000 8.23 0.00 34.19 3.91
1456 1714 3.474034 GCTCTGCTGACGTCACGC 61.474 66.667 24.18 24.18 0.00 5.34
1457 1715 2.256764 AGCTCTGCTGACGTCACG 59.743 61.111 15.76 12.08 37.57 4.35
1494 1752 0.599466 GCGGGCTCCTACGGAATTAC 60.599 60.000 0.00 0.00 0.00 1.89
1495 1753 0.757935 AGCGGGCTCCTACGGAATTA 60.758 55.000 0.00 0.00 0.00 1.40
1500 1758 4.514577 CACAGCGGGCTCCTACGG 62.515 72.222 0.00 0.00 0.00 4.02
1501 1759 4.514577 CCACAGCGGGCTCCTACG 62.515 72.222 0.00 0.00 0.00 3.51
1536 1794 2.168313 GCGATGATCCCAAACCCAAAAT 59.832 45.455 0.00 0.00 0.00 1.82
1542 1800 0.462047 ACGAGCGATGATCCCAAACC 60.462 55.000 0.00 0.00 0.00 3.27
1599 1857 1.666189 GAGCAGAAATTACAGCCGGTC 59.334 52.381 1.90 0.00 0.00 4.79
1668 1927 6.693466 TGATATAGGCGATCGGAACAATAAA 58.307 36.000 18.30 0.00 0.00 1.40
1759 2024 2.747446 CCCCACTGTGTTTACTACATGC 59.253 50.000 7.08 0.00 39.39 4.06
1892 2162 8.662781 TTCAAGAATCTACTAAATTCATCCGG 57.337 34.615 0.00 0.00 35.92 5.14
2275 2612 6.600882 AACAAAAGGATTCAGATGATGCTT 57.399 33.333 0.00 0.00 0.00 3.91
2277 2621 5.063060 GCAAACAAAAGGATTCAGATGATGC 59.937 40.000 0.00 0.00 0.00 3.91
2278 2622 5.579511 GGCAAACAAAAGGATTCAGATGATG 59.420 40.000 0.00 0.00 0.00 3.07
2320 2664 4.616181 CTCACAAAGAGGAAAACACGTT 57.384 40.909 0.00 0.00 40.84 3.99
2341 2685 5.041951 TGGTTAATGCTGATCGAACAAAC 57.958 39.130 0.00 0.00 0.00 2.93
2486 2830 5.237815 TCAGTACACACTTCATCCAATGTC 58.762 41.667 0.00 0.00 30.46 3.06
2501 2845 5.854010 TCCACTTCCATAGATCAGTACAC 57.146 43.478 0.00 0.00 0.00 2.90
2535 2879 3.449018 TCCATTCTTAGTCTCCTGAGCAC 59.551 47.826 0.00 0.00 0.00 4.40
2559 2903 5.319453 TGCCATTCTCTTCAAAGTCATTCT 58.681 37.500 0.00 0.00 0.00 2.40
2629 2973 9.614792 AGCCAAAGAAGTACAATATAACTAAGG 57.385 33.333 0.00 0.00 0.00 2.69
2640 2984 8.956426 CCTTCAAATATAGCCAAAGAAGTACAA 58.044 33.333 0.00 0.00 31.55 2.41
2645 2989 8.398665 GTGTACCTTCAAATATAGCCAAAGAAG 58.601 37.037 0.00 0.00 0.00 2.85
2646 2990 7.885922 TGTGTACCTTCAAATATAGCCAAAGAA 59.114 33.333 0.00 0.00 0.00 2.52
2959 3303 4.998788 TGTCCGATGAAGTAAGATCACTG 58.001 43.478 0.00 0.00 0.00 3.66
2961 3305 5.000012 ACTGTCCGATGAAGTAAGATCAC 58.000 43.478 0.00 0.00 0.00 3.06
2976 3320 5.288712 CACAGCTTAAATACTGTACTGTCCG 59.711 44.000 8.85 0.00 45.15 4.79
3054 3418 3.889520 AGTAGTCGAAGGGGTTGATTC 57.110 47.619 0.00 0.00 0.00 2.52
3056 3420 5.021458 TCTTAAGTAGTCGAAGGGGTTGAT 58.979 41.667 1.63 0.00 0.00 2.57
3067 3431 5.874892 GCAGTAAGCATCTTAAGTAGTCG 57.125 43.478 1.63 0.00 44.79 4.18
3111 3475 8.577296 TCACCATTAGTCTCTAATTCGGAATAG 58.423 37.037 3.22 0.00 0.00 1.73
3147 3511 1.610522 AGGTCAGCATCAAACTGTTGC 59.389 47.619 0.00 2.19 41.91 4.17
3199 3563 9.135189 ACAAGCTTAAAATCATGGCAGATAATA 57.865 29.630 0.00 0.00 0.00 0.98
3205 3569 5.063180 TGACAAGCTTAAAATCATGGCAG 57.937 39.130 0.00 0.00 0.00 4.85
3285 3649 4.335416 TCAGACATGACCCAAAAGAATCC 58.665 43.478 0.00 0.00 0.00 3.01
3304 3668 4.021102 ACCATGTCAGGGTTAGTTTCAG 57.979 45.455 2.56 0.00 34.10 3.02
3314 3678 3.638160 CCCATATGAAAACCATGTCAGGG 59.362 47.826 3.65 0.92 36.71 4.45
3315 3679 3.068590 GCCCATATGAAAACCATGTCAGG 59.931 47.826 3.65 0.00 36.71 3.86
3338 3702 5.277825 TGCGAATTTTATAGAAATTGGGCG 58.722 37.500 1.82 1.78 32.68 6.13
3365 3729 6.338214 TGCTTTGAAACATGGCAAACTATA 57.662 33.333 0.00 0.00 31.37 1.31
3367 3731 4.662468 TGCTTTGAAACATGGCAAACTA 57.338 36.364 0.00 0.00 31.37 2.24
3382 3746 9.806203 TCATATAGGAAACAAAATCATGCTTTG 57.194 29.630 14.88 14.88 39.26 2.77
3416 3780 1.337074 CGGACAATGCCTGTTTGCAAT 60.337 47.619 0.00 0.00 45.84 3.56
3429 3793 9.607988 TGTAATATTATTGAAGTCACGGACAAT 57.392 29.630 0.00 0.00 34.60 2.71
3516 4003 5.888161 TCAGAGCTGACTAGATGACAATACA 59.112 40.000 0.00 0.00 34.14 2.29
3554 4044 1.334556 GCATGAATGACAATGGCGCTA 59.665 47.619 7.64 0.00 0.00 4.26
3829 4319 9.645059 CACAATTTGTTAGTCTAGAGAGATTCA 57.355 33.333 0.00 0.00 33.14 2.57
3830 4320 9.862371 TCACAATTTGTTAGTCTAGAGAGATTC 57.138 33.333 0.00 0.00 33.14 2.52
3901 4391 6.048509 TGAGCTCAAGCATTAATCGATACAA 58.951 36.000 15.67 0.00 45.16 2.41
4036 4527 5.364778 TGTCTACCTGCGCAATTTATATGT 58.635 37.500 13.05 1.34 0.00 2.29
4187 4687 9.567776 TTTAATACTGTTGATTTTGGAGTCTCA 57.432 29.630 1.47 0.00 0.00 3.27
4242 4742 2.012673 AGATCTTGAACAAGCATCGGC 58.987 47.619 9.38 0.00 38.28 5.54
4373 4873 2.019984 GTGGCTCTAAATGCTTCCTGG 58.980 52.381 0.00 0.00 0.00 4.45
4425 4932 5.116180 TGTAATCCGTCTTTTGAGCCATAG 58.884 41.667 0.00 0.00 0.00 2.23
4455 4962 1.742761 ACATCGCAGGAATTGGTCAG 58.257 50.000 0.00 0.00 0.00 3.51
4533 5040 7.054751 GGTAATCCTTCAATTGTAGGTAGCTT 58.945 38.462 25.25 17.61 34.61 3.74
4554 5061 4.349930 AGCTTCAACCTCAACCTTAGGTAA 59.650 41.667 3.55 0.00 46.85 2.85
4564 5071 4.821805 CCAAAGAAGTAGCTTCAACCTCAA 59.178 41.667 10.91 0.00 42.37 3.02
4594 5101 6.310941 TCATTTCCAGAACCCAATACTTGAA 58.689 36.000 0.00 0.00 0.00 2.69
4608 5115 4.774200 TGATGTGTCTCTCTCATTTCCAGA 59.226 41.667 0.00 0.00 31.53 3.86
4625 5132 5.632764 CCGATAGTAAGAGCAAGATGATGTG 59.367 44.000 0.00 0.00 0.00 3.21
4629 5136 5.009110 CACTCCGATAGTAAGAGCAAGATGA 59.991 44.000 0.00 0.00 35.76 2.92
4788 5295 2.164624 AGTCAAGTGTCTCGGTATCTGC 59.835 50.000 0.00 0.00 0.00 4.26
4991 5498 6.146021 CCAAAAATGAAATGAAGTTTCTCCGG 59.854 38.462 0.00 0.00 45.22 5.14
5034 5541 2.475187 GCAGACGATTGCAAAGCTGTAG 60.475 50.000 1.71 0.00 43.53 2.74
5103 5610 8.806429 AAAGAATGACATGTACCATCATTACA 57.194 30.769 13.38 0.00 41.89 2.41
5179 5881 4.192317 AGTCTCCACTGTTTTGAGAACAC 58.808 43.478 3.75 0.00 36.93 3.32
5668 6455 1.260544 GGCAAGGCAAGTCTTCCATT 58.739 50.000 0.00 0.00 0.00 3.16
5670 6457 0.112995 ATGGCAAGGCAAGTCTTCCA 59.887 50.000 0.00 7.64 32.65 3.53
5705 6492 9.267084 GCTAATTGGTCTAAATTGTTCCAAAAA 57.733 29.630 0.00 0.00 40.71 1.94
5707 6494 7.015682 TGGCTAATTGGTCTAAATTGTTCCAAA 59.984 33.333 0.00 0.00 40.71 3.28
5710 6497 6.524101 TGGCTAATTGGTCTAAATTGTTCC 57.476 37.500 0.00 0.00 32.16 3.62
5762 6549 9.472361 GTGTCTAATTAGGCTATCGTAATGAAA 57.528 33.333 17.59 0.00 34.56 2.69
5764 6551 8.173542 TGTGTCTAATTAGGCTATCGTAATGA 57.826 34.615 17.59 0.00 34.56 2.57
5806 6593 0.534877 ACGGCTCAGCACAACAATGA 60.535 50.000 0.00 0.00 0.00 2.57
5848 6762 7.761409 TGGTGAGACATACAAAAATAATGCTC 58.239 34.615 0.00 0.00 0.00 4.26
5884 6798 6.618811 TCTAGTGAGACGTCCAAGAAATAAC 58.381 40.000 13.01 0.00 0.00 1.89
5897 6811 5.122554 ACACTTAGTGACATCTAGTGAGACG 59.877 44.000 20.07 0.00 36.96 4.18
6301 7215 8.083828 TCCTTTCTTCTCAGCTGTTTCTATAT 57.916 34.615 14.67 0.00 0.00 0.86
6302 7216 7.364232 CCTCCTTTCTTCTCAGCTGTTTCTATA 60.364 40.741 14.67 0.00 0.00 1.31
6303 7217 6.365970 TCCTTTCTTCTCAGCTGTTTCTAT 57.634 37.500 14.67 0.00 0.00 1.98
6304 7218 5.279708 CCTCCTTTCTTCTCAGCTGTTTCTA 60.280 44.000 14.67 0.00 0.00 2.10
6305 7219 4.504689 CCTCCTTTCTTCTCAGCTGTTTCT 60.505 45.833 14.67 0.00 0.00 2.52
6306 7220 3.750652 CCTCCTTTCTTCTCAGCTGTTTC 59.249 47.826 14.67 0.00 0.00 2.78
6307 7221 3.497584 CCCTCCTTTCTTCTCAGCTGTTT 60.498 47.826 14.67 0.00 0.00 2.83
6308 7222 2.039613 CCCTCCTTTCTTCTCAGCTGTT 59.960 50.000 14.67 0.00 0.00 3.16
6309 7223 1.627834 CCCTCCTTTCTTCTCAGCTGT 59.372 52.381 14.67 0.00 0.00 4.40
6310 7224 1.678425 GCCCTCCTTTCTTCTCAGCTG 60.678 57.143 7.63 7.63 0.00 4.24
6311 7225 0.617935 GCCCTCCTTTCTTCTCAGCT 59.382 55.000 0.00 0.00 0.00 4.24
6312 7226 0.326264 TGCCCTCCTTTCTTCTCAGC 59.674 55.000 0.00 0.00 0.00 4.26
6313 7227 4.703379 ATATGCCCTCCTTTCTTCTCAG 57.297 45.455 0.00 0.00 0.00 3.35
6314 7228 5.467738 TCTATATGCCCTCCTTTCTTCTCA 58.532 41.667 0.00 0.00 0.00 3.27
6315 7229 6.426646 TTCTATATGCCCTCCTTTCTTCTC 57.573 41.667 0.00 0.00 0.00 2.87
6316 7230 6.158695 TGTTTCTATATGCCCTCCTTTCTTCT 59.841 38.462 0.00 0.00 0.00 2.85
6317 7231 6.357367 TGTTTCTATATGCCCTCCTTTCTTC 58.643 40.000 0.00 0.00 0.00 2.87
6318 7232 6.327386 TGTTTCTATATGCCCTCCTTTCTT 57.673 37.500 0.00 0.00 0.00 2.52
6319 7233 5.688766 GCTGTTTCTATATGCCCTCCTTTCT 60.689 44.000 0.00 0.00 0.00 2.52
6320 7234 4.517075 GCTGTTTCTATATGCCCTCCTTTC 59.483 45.833 0.00 0.00 0.00 2.62
6321 7235 4.166919 AGCTGTTTCTATATGCCCTCCTTT 59.833 41.667 0.00 0.00 0.00 3.11
6322 7236 3.718956 AGCTGTTTCTATATGCCCTCCTT 59.281 43.478 0.00 0.00 0.00 3.36
6323 7237 3.072184 CAGCTGTTTCTATATGCCCTCCT 59.928 47.826 5.25 0.00 0.00 3.69
6324 7238 3.071602 TCAGCTGTTTCTATATGCCCTCC 59.928 47.826 14.67 0.00 0.00 4.30
6325 7239 4.342862 TCAGCTGTTTCTATATGCCCTC 57.657 45.455 14.67 0.00 0.00 4.30
6326 7240 4.989875 ATCAGCTGTTTCTATATGCCCT 57.010 40.909 14.67 0.00 0.00 5.19
6327 7241 5.997746 TGTTATCAGCTGTTTCTATATGCCC 59.002 40.000 14.67 0.00 0.00 5.36
6328 7242 7.308229 CCTTGTTATCAGCTGTTTCTATATGCC 60.308 40.741 14.67 0.00 0.00 4.40
6329 7243 7.442364 TCCTTGTTATCAGCTGTTTCTATATGC 59.558 37.037 14.67 1.45 0.00 3.14
6330 7244 8.893219 TCCTTGTTATCAGCTGTTTCTATATG 57.107 34.615 14.67 0.00 0.00 1.78
6361 7275 6.564873 GCAAATATCGTCTGCTTCTATGGAAC 60.565 42.308 0.00 0.00 33.20 3.62
6401 7315 2.744741 CAAACCCCGCTTTGTTTTTGTT 59.255 40.909 0.00 0.00 32.60 2.83
6404 7318 3.266636 CTTCAAACCCCGCTTTGTTTTT 58.733 40.909 0.00 0.00 32.60 1.94
6458 7372 1.066573 CCATCGACCAGCTTCAGAACT 60.067 52.381 0.00 0.00 0.00 3.01
6581 7495 2.390225 AGGAGTGAGTGAGGAACTGT 57.610 50.000 0.00 0.00 41.55 3.55
6601 7515 7.312899 GTGATCCATTAGAAAACCAAATCGTT 58.687 34.615 0.00 0.00 0.00 3.85
6711 7629 3.766545 TCCTCAATGAGTTGAAAAGGGG 58.233 45.455 9.63 0.00 43.39 4.79
6731 7649 6.581712 AGCTGATAAGAGAGAAAGGTTGATC 58.418 40.000 0.00 0.00 0.00 2.92
6732 7650 6.155910 TGAGCTGATAAGAGAGAAAGGTTGAT 59.844 38.462 0.00 0.00 0.00 2.57
6733 7651 5.481824 TGAGCTGATAAGAGAGAAAGGTTGA 59.518 40.000 0.00 0.00 0.00 3.18
6735 7653 5.483583 ACTGAGCTGATAAGAGAGAAAGGTT 59.516 40.000 0.00 0.00 0.00 3.50
6736 7654 5.022787 ACTGAGCTGATAAGAGAGAAAGGT 58.977 41.667 0.00 0.00 0.00 3.50
6737 7655 5.596836 ACTGAGCTGATAAGAGAGAAAGG 57.403 43.478 0.00 0.00 0.00 3.11
6738 7656 9.248291 GAATAACTGAGCTGATAAGAGAGAAAG 57.752 37.037 0.00 0.00 0.00 2.62
6739 7657 8.200792 GGAATAACTGAGCTGATAAGAGAGAAA 58.799 37.037 0.00 0.00 0.00 2.52
6742 7660 6.041409 TGGGAATAACTGAGCTGATAAGAGAG 59.959 42.308 0.00 0.00 0.00 3.20
6744 7662 6.166984 TGGGAATAACTGAGCTGATAAGAG 57.833 41.667 0.00 0.00 0.00 2.85
6746 7664 5.936956 GGATGGGAATAACTGAGCTGATAAG 59.063 44.000 0.00 0.00 0.00 1.73
6774 7696 2.169352 GAGCAATCCAGGAGCTAACAGA 59.831 50.000 3.14 0.00 39.02 3.41
6780 7702 0.990374 AAGTGAGCAATCCAGGAGCT 59.010 50.000 2.76 2.76 42.17 4.09
6811 7740 2.237965 ACCCTGCCCAGCACCATTA 61.238 57.895 0.00 0.00 33.79 1.90
6822 7751 3.670377 GCGGACAAACACCCTGCC 61.670 66.667 0.00 0.00 0.00 4.85
6988 7917 1.221021 GGATCACAGGAACCCCGAC 59.779 63.158 0.00 0.00 37.58 4.79
7086 8018 6.032146 CGATTACAACTTCGTCGCGATAATAT 59.968 38.462 14.06 0.00 35.23 1.28
7107 8039 0.673333 TGCACATGGAGAACGCGATT 60.673 50.000 15.93 2.74 0.00 3.34
7175 8110 0.036732 ATGCTGCGAAGGAAACCAGA 59.963 50.000 0.00 0.00 0.00 3.86
7184 8119 3.476295 ACACAAATACATGCTGCGAAG 57.524 42.857 0.00 0.00 0.00 3.79
7201 8136 7.169982 GGCAATCTCTATGAACATACTGTACAC 59.830 40.741 0.00 0.00 0.00 2.90
7222 8158 2.223971 CCTACCTCGAACGTATGGCAAT 60.224 50.000 0.00 0.00 0.00 3.56
7293 8273 7.951706 CAAAATCGCTCAATTTTGTGTTTTT 57.048 28.000 15.26 0.00 45.30 1.94
7303 8283 4.922692 TCAAAATCGCAAAATCGCTCAATT 59.077 33.333 0.00 0.00 0.00 2.32
7305 8285 3.894920 TCAAAATCGCAAAATCGCTCAA 58.105 36.364 0.00 0.00 0.00 3.02
7306 8286 3.550950 TCAAAATCGCAAAATCGCTCA 57.449 38.095 0.00 0.00 0.00 4.26
7309 8289 4.324402 ACAGATTCAAAATCGCAAAATCGC 59.676 37.500 0.00 0.00 32.82 4.58
7310 8290 5.997732 ACAGATTCAAAATCGCAAAATCG 57.002 34.783 0.00 0.00 32.82 3.34
7311 8291 6.020360 GGCTACAGATTCAAAATCGCAAAATC 60.020 38.462 0.00 0.00 0.00 2.17
7312 8292 5.807011 GGCTACAGATTCAAAATCGCAAAAT 59.193 36.000 0.00 0.00 0.00 1.82
7313 8293 5.160641 GGCTACAGATTCAAAATCGCAAAA 58.839 37.500 0.00 0.00 0.00 2.44
7314 8294 4.671508 CGGCTACAGATTCAAAATCGCAAA 60.672 41.667 0.00 0.00 0.00 3.68
7315 8295 3.181511 CGGCTACAGATTCAAAATCGCAA 60.182 43.478 0.00 0.00 0.00 4.85
7316 8296 2.351418 CGGCTACAGATTCAAAATCGCA 59.649 45.455 0.00 0.00 0.00 5.10
7333 8313 0.466124 GGGAGTAATCTTCTGCGGCT 59.534 55.000 0.00 0.00 0.00 5.52
7335 8315 1.482593 ACAGGGAGTAATCTTCTGCGG 59.517 52.381 11.77 0.00 32.58 5.69
7350 8330 2.613133 GCGACTACAGTAGAGTACAGGG 59.387 54.545 14.94 0.00 0.00 4.45
7351 8331 3.063725 GTGCGACTACAGTAGAGTACAGG 59.936 52.174 14.94 0.00 0.00 4.00
7369 8351 0.445436 GCCATCTTTCACAGAGTGCG 59.555 55.000 0.00 0.00 33.87 5.34
7409 8391 6.990349 AGGTCGAGTAATTTCTGTTTCTCAAA 59.010 34.615 0.00 0.00 0.00 2.69
7410 8392 6.522054 AGGTCGAGTAATTTCTGTTTCTCAA 58.478 36.000 0.00 0.00 0.00 3.02
7411 8393 6.097915 AGGTCGAGTAATTTCTGTTTCTCA 57.902 37.500 0.00 0.00 0.00 3.27
7413 8395 8.936864 CATAAAGGTCGAGTAATTTCTGTTTCT 58.063 33.333 0.00 0.00 0.00 2.52
7414 8396 7.692705 GCATAAAGGTCGAGTAATTTCTGTTTC 59.307 37.037 0.00 0.00 0.00 2.78
7418 8400 5.584649 TGGCATAAAGGTCGAGTAATTTCTG 59.415 40.000 0.00 0.00 0.00 3.02
7419 8401 5.741011 TGGCATAAAGGTCGAGTAATTTCT 58.259 37.500 0.00 0.00 0.00 2.52
7451 8433 3.826157 CAGTTAACTGGGCCAATTTCTCA 59.174 43.478 25.19 0.00 40.20 3.27
7503 8485 1.512771 GTTGTTTTCAGCGCTGTTTCG 59.487 47.619 34.70 11.54 0.00 3.46
7504 8486 2.797491 AGTTGTTTTCAGCGCTGTTTC 58.203 42.857 34.70 22.69 36.16 2.78
7523 8505 1.227383 GTGGGTTGGGATGGGCTAG 59.773 63.158 0.00 0.00 0.00 3.42
7534 8516 3.286751 CTGCGGTGGTGTGGGTTG 61.287 66.667 0.00 0.00 0.00 3.77
7542 8528 0.893727 CTTTTAAGGCCTGCGGTGGT 60.894 55.000 5.69 0.00 0.00 4.16
7546 8532 0.322546 ACCTCTTTTAAGGCCTGCGG 60.323 55.000 5.69 0.00 40.34 5.69
7558 8544 3.715315 GGGTAAGCCTGGTATACCTCTTT 59.285 47.826 22.41 13.28 39.24 2.52
7567 8553 2.032965 TGAACTGGGTAAGCCTGGTA 57.967 50.000 0.00 0.00 34.45 3.25
7570 8556 2.568623 AGTTGAACTGGGTAAGCCTG 57.431 50.000 0.00 0.00 34.45 4.85
7571 8557 3.595190 AAAGTTGAACTGGGTAAGCCT 57.405 42.857 0.00 0.00 34.45 4.58
7576 8564 5.064962 CACGTTACAAAAGTTGAACTGGGTA 59.935 40.000 0.00 0.00 0.00 3.69
7584 8572 2.356382 CAGCCCACGTTACAAAAGTTGA 59.644 45.455 0.00 0.00 0.00 3.18
7664 8685 2.709966 TCCTAGGTTTTATAGGCCCCC 58.290 52.381 9.08 0.00 39.81 5.40
7669 8702 3.495629 GGGCGGTTCCTAGGTTTTATAGG 60.496 52.174 9.08 0.00 41.11 2.57
7737 8770 1.222936 CCTCAGCGCAGATCCCTTT 59.777 57.895 11.47 0.00 0.00 3.11
7757 8803 3.055747 CCTTCGTTTTCCTCTCCTAGCTT 60.056 47.826 0.00 0.00 0.00 3.74
7760 8806 4.202172 GGATCCTTCGTTTTCCTCTCCTAG 60.202 50.000 3.84 0.00 0.00 3.02
7761 8807 3.705072 GGATCCTTCGTTTTCCTCTCCTA 59.295 47.826 3.84 0.00 0.00 2.94
7762 8808 2.502130 GGATCCTTCGTTTTCCTCTCCT 59.498 50.000 3.84 0.00 0.00 3.69
7763 8809 2.738964 CGGATCCTTCGTTTTCCTCTCC 60.739 54.545 10.75 0.00 0.00 3.71
7764 8810 2.541556 CGGATCCTTCGTTTTCCTCTC 58.458 52.381 10.75 0.00 0.00 3.20
7765 8811 1.405661 GCGGATCCTTCGTTTTCCTCT 60.406 52.381 10.75 0.00 0.00 3.69
7766 8812 1.007580 GCGGATCCTTCGTTTTCCTC 58.992 55.000 10.75 0.00 0.00 3.71
7767 8813 0.613777 AGCGGATCCTTCGTTTTCCT 59.386 50.000 10.75 0.00 0.00 3.36
7768 8814 1.007580 GAGCGGATCCTTCGTTTTCC 58.992 55.000 10.75 0.00 0.00 3.13
7769 8815 0.645868 CGAGCGGATCCTTCGTTTTC 59.354 55.000 21.02 4.78 0.00 2.29
7770 8816 0.037605 ACGAGCGGATCCTTCGTTTT 60.038 50.000 26.21 11.46 44.30 2.43
7823 8869 0.040425 CAAAAGTCGGCCAAACTCGG 60.040 55.000 2.24 0.00 0.00 4.63
7905 8953 7.552330 ACACAAAAGCATGGTCTAAAACAAAAT 59.448 29.630 0.00 0.00 0.00 1.82
7918 8966 7.144722 TCTACATCTAAACACAAAAGCATGG 57.855 36.000 0.00 0.00 0.00 3.66
7923 8971 9.208022 TGTCAGATCTACATCTAAACACAAAAG 57.792 33.333 0.00 0.00 37.25 2.27
7977 9025 7.158697 TCATGGAACGATGAACCGATTATAAT 58.841 34.615 0.00 0.00 29.11 1.28
7985 9033 2.279741 ACATCATGGAACGATGAACCG 58.720 47.619 7.12 0.00 42.39 4.44
8137 9185 8.645814 TCTGAGCGGAGGAAGTATAATTTATA 57.354 34.615 0.00 0.00 0.00 0.98
8158 9206 5.822519 CCATTCCTCCGACAAATATTTCTGA 59.177 40.000 0.00 0.00 0.00 3.27
8160 9208 6.001449 TCCATTCCTCCGACAAATATTTCT 57.999 37.500 0.00 0.00 0.00 2.52
8222 9272 3.919804 CCGTACGGAAATACTTGTCGAAA 59.080 43.478 30.64 0.00 37.50 3.46
8224 9274 2.746904 TCCGTACGGAAATACTTGTCGA 59.253 45.455 33.96 6.98 42.05 4.20
8289 9365 7.828508 ATAAGGTGCATCATGATTTGTGTAT 57.171 32.000 5.16 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.