Multiple sequence alignment - TraesCS3D01G408300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G408300 chr3D 100.000 3692 0 0 1 3692 522779903 522776212 0.000000e+00 6818.0
1 TraesCS3D01G408300 chr3B 90.138 943 65 17 2016 2936 688396674 688395738 0.000000e+00 1201.0
2 TraesCS3D01G408300 chr3B 92.340 470 27 5 783 1244 688398153 688397685 0.000000e+00 660.0
3 TraesCS3D01G408300 chr3B 92.035 452 28 5 3247 3692 688392095 688391646 2.420000e-176 628.0
4 TraesCS3D01G408300 chr3B 86.567 402 45 6 249 647 16756011 16756406 5.660000e-118 435.0
5 TraesCS3D01G408300 chr3B 83.626 342 29 13 1366 1704 688397416 688397099 2.790000e-76 296.0
6 TraesCS3D01G408300 chr3B 100.000 82 0 0 3055 3136 688392248 688392167 6.390000e-33 152.0
7 TraesCS3D01G408300 chr3B 95.402 87 4 0 2935 3021 65214140 65214054 4.970000e-29 139.0
8 TraesCS3D01G408300 chr3B 98.571 70 1 0 3106 3175 688392169 688392100 1.390000e-24 124.0
9 TraesCS3D01G408300 chr3B 100.000 42 0 0 3016 3057 688395738 688395697 1.100000e-10 78.7
10 TraesCS3D01G408300 chr3A 91.114 889 52 15 784 1651 657464782 657463900 0.000000e+00 1179.0
11 TraesCS3D01G408300 chr3A 91.148 723 37 11 2045 2744 657459086 657458368 0.000000e+00 955.0
12 TraesCS3D01G408300 chr3A 96.205 527 11 2 3174 3692 657427514 657426989 0.000000e+00 854.0
13 TraesCS3D01G408300 chr3A 89.941 169 4 3 3018 3173 657457698 657457530 4.830000e-49 206.0
14 TraesCS3D01G408300 chr3A 91.579 95 7 1 2933 3027 446570418 446570511 2.990000e-26 130.0
15 TraesCS3D01G408300 chr3A 96.667 60 2 0 2877 2936 657457756 657457697 2.350000e-17 100.0
16 TraesCS3D01G408300 chr3A 81.148 122 16 6 795 913 594495684 594495567 1.410000e-14 91.6
17 TraesCS3D01G408300 chr6A 87.649 672 67 10 1 657 584891940 584892610 0.000000e+00 767.0
18 TraesCS3D01G408300 chr6A 92.632 95 6 1 2933 3027 51480531 51480624 6.430000e-28 135.0
19 TraesCS3D01G408300 chr2A 87.221 673 70 7 1 659 718930991 718930321 0.000000e+00 752.0
20 TraesCS3D01G408300 chr2A 86.997 646 67 10 1 630 524593264 524593908 0.000000e+00 712.0
21 TraesCS3D01G408300 chr2A 89.320 103 7 4 2934 3033 729165682 729165581 3.870000e-25 126.0
22 TraesCS3D01G408300 chr2D 90.288 556 50 4 105 657 614342641 614342087 0.000000e+00 725.0
23 TraesCS3D01G408300 chr2D 96.471 85 3 0 2935 3019 573891814 573891898 1.380000e-29 141.0
24 TraesCS3D01G408300 chr2D 91.919 99 6 2 2928 3026 556926423 556926519 1.790000e-28 137.0
25 TraesCS3D01G408300 chr4D 90.870 460 38 4 202 658 497518103 497517645 6.780000e-172 614.0
26 TraesCS3D01G408300 chr6B 89.706 408 39 3 249 655 75644250 75643845 5.470000e-143 518.0
27 TraesCS3D01G408300 chr6B 87.831 189 22 1 70 257 75644461 75644273 1.730000e-53 220.0
28 TraesCS3D01G408300 chr1B 89.242 409 41 3 250 657 682168194 682168600 3.290000e-140 508.0
29 TraesCS3D01G408300 chr5D 87.017 362 46 1 257 617 552029406 552029045 1.230000e-109 407.0
30 TraesCS3D01G408300 chr5D 86.770 257 32 2 2 257 552029691 552029436 6.030000e-73 285.0
31 TraesCS3D01G408300 chr2B 93.478 92 5 1 2932 3022 550399775 550399684 6.430000e-28 135.0
32 TraesCS3D01G408300 chr7B 92.553 94 6 1 2933 3026 694802480 694802572 2.310000e-27 134.0
33 TraesCS3D01G408300 chr5B 91.667 96 6 2 2935 3030 532360007 532359914 8.320000e-27 132.0
34 TraesCS3D01G408300 chr5B 92.857 56 4 0 865 920 706687679 706687734 8.500000e-12 82.4
35 TraesCS3D01G408300 chrUn 75.820 244 35 18 3422 3651 15355563 15355796 6.520000e-18 102.0
36 TraesCS3D01G408300 chrUn 95.745 47 1 1 3605 3651 333538931 333538976 1.420000e-09 75.0
37 TraesCS3D01G408300 chrUn 78.723 94 19 1 3541 3633 6548447 6548540 1.110000e-05 62.1
38 TraesCS3D01G408300 chr7A 92.982 57 2 2 863 917 542708109 542708165 8.500000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G408300 chr3D 522776212 522779903 3691 True 6818.000000 6818 100.000000 1 3692 1 chr3D.!!$R1 3691
1 TraesCS3D01G408300 chr3B 688391646 688398153 6507 True 448.528571 1201 93.815714 783 3692 7 chr3B.!!$R2 2909
2 TraesCS3D01G408300 chr3A 657463900 657464782 882 True 1179.000000 1179 91.114000 784 1651 1 chr3A.!!$R3 867
3 TraesCS3D01G408300 chr3A 657426989 657427514 525 True 854.000000 854 96.205000 3174 3692 1 chr3A.!!$R2 518
4 TraesCS3D01G408300 chr3A 657457530 657459086 1556 True 420.333333 955 92.585333 2045 3173 3 chr3A.!!$R4 1128
5 TraesCS3D01G408300 chr6A 584891940 584892610 670 False 767.000000 767 87.649000 1 657 1 chr6A.!!$F2 656
6 TraesCS3D01G408300 chr2A 718930321 718930991 670 True 752.000000 752 87.221000 1 659 1 chr2A.!!$R1 658
7 TraesCS3D01G408300 chr2A 524593264 524593908 644 False 712.000000 712 86.997000 1 630 1 chr2A.!!$F1 629
8 TraesCS3D01G408300 chr2D 614342087 614342641 554 True 725.000000 725 90.288000 105 657 1 chr2D.!!$R1 552
9 TraesCS3D01G408300 chr6B 75643845 75644461 616 True 369.000000 518 88.768500 70 655 2 chr6B.!!$R1 585
10 TraesCS3D01G408300 chr5D 552029045 552029691 646 True 346.000000 407 86.893500 2 617 2 chr5D.!!$R1 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
734 801 0.035725 CATCAACAGAGAGGGCTGCA 60.036 55.0 0.50 0.00 39.51 4.41 F
757 824 0.107459 TGTGTGTGTAGCTTGCACCA 60.107 50.0 15.51 11.23 36.11 4.17 F
2106 2573 0.032540 CAAAGGCTTGTCACTTGGCC 59.967 55.0 0.00 0.00 44.38 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2086 2553 0.032540 GCCAAGTGACAAGCCTTTGG 59.967 55.0 0.00 0.0 38.66 3.28 R
2112 2579 0.108281 GGTAAGGAACCCAGCGAGAC 60.108 60.0 0.00 0.0 43.16 3.36 R
3222 7681 2.698797 GGGGTGCAGCTATCAGTAGTTA 59.301 50.0 16.65 0.0 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.189521 GCGTCCCATCCCGAACAT 59.810 61.111 0.00 0.00 0.00 2.71
40 41 1.070134 CCATCCCGAACATCCACGTAT 59.930 52.381 0.00 0.00 0.00 3.06
41 42 2.297880 CCATCCCGAACATCCACGTATA 59.702 50.000 0.00 0.00 0.00 1.47
49 50 2.537143 ACATCCACGTATAGGATCCCC 58.463 52.381 8.55 0.00 43.90 4.81
50 51 2.111972 ACATCCACGTATAGGATCCCCT 59.888 50.000 8.55 0.00 43.90 4.79
65 66 1.623625 CCCTAGCCACCTCTCCTCT 59.376 63.158 0.00 0.00 0.00 3.69
287 350 2.997315 CGAGCCCCTCTGTCCACA 60.997 66.667 0.00 0.00 0.00 4.17
337 400 2.600470 GGGCACAACAACCTCCCC 60.600 66.667 0.00 0.00 0.00 4.81
419 483 3.513515 ACCCTTTTGTTTGTTCAGCTGAA 59.486 39.130 25.16 25.16 0.00 3.02
420 484 4.020662 ACCCTTTTGTTTGTTCAGCTGAAA 60.021 37.500 29.99 17.23 35.58 2.69
424 488 6.811170 CCTTTTGTTTGTTCAGCTGAAAACTA 59.189 34.615 30.17 24.48 35.58 2.24
434 498 1.826385 CTGAAAACTAGTGGGCCCTG 58.174 55.000 25.70 12.97 0.00 4.45
492 557 2.549064 TATGCCATGTCAGCGCTTAT 57.451 45.000 7.50 0.00 0.00 1.73
506 571 1.814248 CGCTTATAGGTGGGCCCTTTC 60.814 57.143 25.70 13.35 42.73 2.62
521 587 3.057245 GCCCTTTCTGTCAGAAATTGGAC 60.057 47.826 30.21 22.22 42.66 4.02
577 643 7.581213 TTGAGAAAATTAGCAAGGAAACTGA 57.419 32.000 0.00 0.00 42.68 3.41
614 681 2.038820 CCAAGGAATGTGGTGGCAAATT 59.961 45.455 0.00 0.00 0.00 1.82
641 708 5.508200 TGTGAACTTAAAATGTGGTGGTC 57.492 39.130 0.00 0.00 0.00 4.02
659 726 5.048083 GGTGGTCTTTTGCAATTCACTCATA 60.048 40.000 0.00 0.00 0.00 2.15
660 727 6.350445 GGTGGTCTTTTGCAATTCACTCATAT 60.350 38.462 0.00 0.00 0.00 1.78
661 728 6.529125 GTGGTCTTTTGCAATTCACTCATATG 59.471 38.462 0.00 0.00 0.00 1.78
662 729 5.517770 GGTCTTTTGCAATTCACTCATATGC 59.482 40.000 0.00 0.00 37.52 3.14
663 730 6.327934 GTCTTTTGCAATTCACTCATATGCT 58.672 36.000 0.00 0.00 37.86 3.79
664 731 6.252869 GTCTTTTGCAATTCACTCATATGCTG 59.747 38.462 0.00 0.00 37.86 4.41
665 732 3.703286 TGCAATTCACTCATATGCTGC 57.297 42.857 0.00 0.00 37.86 5.25
666 733 3.018149 TGCAATTCACTCATATGCTGCA 58.982 40.909 4.13 4.13 37.86 4.41
667 734 3.444388 TGCAATTCACTCATATGCTGCAA 59.556 39.130 6.36 0.00 37.86 4.08
668 735 4.082136 TGCAATTCACTCATATGCTGCAAA 60.082 37.500 6.36 0.00 37.86 3.68
669 736 4.865925 GCAATTCACTCATATGCTGCAAAA 59.134 37.500 6.36 0.00 34.29 2.44
670 737 5.349270 GCAATTCACTCATATGCTGCAAAAA 59.651 36.000 6.36 0.00 34.29 1.94
671 738 6.036735 GCAATTCACTCATATGCTGCAAAAAT 59.963 34.615 6.36 0.00 34.29 1.82
672 739 7.223193 GCAATTCACTCATATGCTGCAAAAATA 59.777 33.333 6.36 0.00 34.29 1.40
673 740 9.089601 CAATTCACTCATATGCTGCAAAAATAA 57.910 29.630 6.36 0.00 0.00 1.40
674 741 8.638685 ATTCACTCATATGCTGCAAAAATAAC 57.361 30.769 6.36 0.00 0.00 1.89
675 742 7.155655 TCACTCATATGCTGCAAAAATAACA 57.844 32.000 6.36 0.00 0.00 2.41
676 743 7.252708 TCACTCATATGCTGCAAAAATAACAG 58.747 34.615 6.36 0.00 34.48 3.16
677 744 7.031372 CACTCATATGCTGCAAAAATAACAGT 58.969 34.615 6.36 0.00 33.87 3.55
678 745 7.543172 CACTCATATGCTGCAAAAATAACAGTT 59.457 33.333 6.36 0.00 33.87 3.16
679 746 8.090214 ACTCATATGCTGCAAAAATAACAGTTT 58.910 29.630 6.36 0.00 33.87 2.66
680 747 8.830201 TCATATGCTGCAAAAATAACAGTTTT 57.170 26.923 6.36 0.00 33.87 2.43
681 748 8.710551 TCATATGCTGCAAAAATAACAGTTTTG 58.289 29.630 6.36 7.30 44.94 2.44
682 749 6.923928 ATGCTGCAAAAATAACAGTTTTGT 57.076 29.167 6.36 0.00 44.30 2.83
683 750 6.343226 TGCTGCAAAAATAACAGTTTTGTC 57.657 33.333 0.00 6.53 44.30 3.18
684 751 5.871524 TGCTGCAAAAATAACAGTTTTGTCA 59.128 32.000 0.00 9.66 44.30 3.58
685 752 6.538021 TGCTGCAAAAATAACAGTTTTGTCAT 59.462 30.769 0.00 0.00 44.30 3.06
686 753 7.065563 TGCTGCAAAAATAACAGTTTTGTCATT 59.934 29.630 0.00 0.00 44.30 2.57
687 754 7.583762 GCTGCAAAAATAACAGTTTTGTCATTC 59.416 33.333 11.88 0.00 44.30 2.67
688 755 7.914465 TGCAAAAATAACAGTTTTGTCATTCC 58.086 30.769 11.88 0.00 44.30 3.01
689 756 7.768120 TGCAAAAATAACAGTTTTGTCATTCCT 59.232 29.630 11.88 0.00 44.30 3.36
690 757 9.255304 GCAAAAATAACAGTTTTGTCATTCCTA 57.745 29.630 11.88 0.00 44.30 2.94
697 764 8.974060 AACAGTTTTGTCATTCCTACTTAAGA 57.026 30.769 10.09 0.00 36.23 2.10
698 765 9.574516 AACAGTTTTGTCATTCCTACTTAAGAT 57.425 29.630 10.09 0.00 36.23 2.40
699 766 9.220767 ACAGTTTTGTCATTCCTACTTAAGATC 57.779 33.333 10.09 0.00 29.46 2.75
700 767 9.219603 CAGTTTTGTCATTCCTACTTAAGATCA 57.780 33.333 10.09 0.00 0.00 2.92
701 768 9.965902 AGTTTTGTCATTCCTACTTAAGATCAT 57.034 29.630 10.09 0.00 0.00 2.45
702 769 9.994432 GTTTTGTCATTCCTACTTAAGATCATG 57.006 33.333 10.09 4.35 0.00 3.07
703 770 7.792374 TTGTCATTCCTACTTAAGATCATGC 57.208 36.000 10.09 2.31 0.00 4.06
704 771 6.888105 TGTCATTCCTACTTAAGATCATGCA 58.112 36.000 10.09 0.00 0.00 3.96
705 772 7.512130 TGTCATTCCTACTTAAGATCATGCAT 58.488 34.615 10.09 0.00 0.00 3.96
706 773 7.443272 TGTCATTCCTACTTAAGATCATGCATG 59.557 37.037 21.07 21.07 0.00 4.06
707 774 6.429078 TCATTCCTACTTAAGATCATGCATGC 59.571 38.462 22.25 11.82 0.00 4.06
708 775 4.645535 TCCTACTTAAGATCATGCATGCC 58.354 43.478 22.25 15.24 0.00 4.40
709 776 3.434641 CCTACTTAAGATCATGCATGCCG 59.565 47.826 22.25 6.55 0.00 5.69
710 777 3.198409 ACTTAAGATCATGCATGCCGA 57.802 42.857 22.25 12.44 0.00 5.54
711 778 2.874701 ACTTAAGATCATGCATGCCGAC 59.125 45.455 22.25 12.00 0.00 4.79
712 779 2.618442 TAAGATCATGCATGCCGACA 57.382 45.000 22.25 4.52 0.00 4.35
713 780 1.019673 AAGATCATGCATGCCGACAC 58.980 50.000 22.25 9.64 0.00 3.67
714 781 0.816825 AGATCATGCATGCCGACACC 60.817 55.000 22.25 5.30 0.00 4.16
715 782 1.789078 GATCATGCATGCCGACACCC 61.789 60.000 22.25 0.97 0.00 4.61
716 783 2.555302 ATCATGCATGCCGACACCCA 62.555 55.000 22.25 1.33 0.00 4.51
717 784 2.122797 CATGCATGCCGACACCCAT 61.123 57.895 14.93 0.00 0.00 4.00
718 785 1.825191 ATGCATGCCGACACCCATC 60.825 57.895 16.68 0.00 0.00 3.51
719 786 2.438254 GCATGCCGACACCCATCA 60.438 61.111 6.36 0.00 0.00 3.07
720 787 2.045708 GCATGCCGACACCCATCAA 61.046 57.895 6.36 0.00 0.00 2.57
721 788 1.802636 CATGCCGACACCCATCAAC 59.197 57.895 0.00 0.00 0.00 3.18
722 789 0.959867 CATGCCGACACCCATCAACA 60.960 55.000 0.00 0.00 0.00 3.33
723 790 0.677731 ATGCCGACACCCATCAACAG 60.678 55.000 0.00 0.00 0.00 3.16
724 791 1.003839 GCCGACACCCATCAACAGA 60.004 57.895 0.00 0.00 0.00 3.41
725 792 1.021390 GCCGACACCCATCAACAGAG 61.021 60.000 0.00 0.00 0.00 3.35
726 793 0.608130 CCGACACCCATCAACAGAGA 59.392 55.000 0.00 0.00 0.00 3.10
727 794 1.404717 CCGACACCCATCAACAGAGAG 60.405 57.143 0.00 0.00 0.00 3.20
728 795 1.404717 CGACACCCATCAACAGAGAGG 60.405 57.143 0.00 0.00 0.00 3.69
729 796 0.987294 ACACCCATCAACAGAGAGGG 59.013 55.000 0.00 0.00 45.20 4.30
730 797 0.393537 CACCCATCAACAGAGAGGGC 60.394 60.000 0.00 0.00 43.47 5.19
731 798 0.548682 ACCCATCAACAGAGAGGGCT 60.549 55.000 0.00 0.00 43.47 5.19
732 799 0.107312 CCCATCAACAGAGAGGGCTG 60.107 60.000 0.00 0.00 38.12 4.85
733 800 0.747283 CCATCAACAGAGAGGGCTGC 60.747 60.000 0.00 0.00 39.51 5.25
734 801 0.035725 CATCAACAGAGAGGGCTGCA 60.036 55.000 0.50 0.00 39.51 4.41
735 802 0.917533 ATCAACAGAGAGGGCTGCAT 59.082 50.000 0.50 0.00 39.51 3.96
736 803 0.694771 TCAACAGAGAGGGCTGCATT 59.305 50.000 0.50 0.00 39.51 3.56
737 804 1.908619 TCAACAGAGAGGGCTGCATTA 59.091 47.619 0.50 0.00 39.51 1.90
738 805 2.507058 TCAACAGAGAGGGCTGCATTAT 59.493 45.455 0.50 0.00 39.51 1.28
739 806 2.617308 CAACAGAGAGGGCTGCATTATG 59.383 50.000 0.50 0.00 39.51 1.90
740 807 1.842562 ACAGAGAGGGCTGCATTATGT 59.157 47.619 0.50 0.00 39.51 2.29
741 808 2.219458 CAGAGAGGGCTGCATTATGTG 58.781 52.381 0.50 0.00 0.00 3.21
742 809 1.842562 AGAGAGGGCTGCATTATGTGT 59.157 47.619 0.50 0.00 0.00 3.72
743 810 1.945394 GAGAGGGCTGCATTATGTGTG 59.055 52.381 0.50 0.00 0.00 3.82
744 811 1.283029 AGAGGGCTGCATTATGTGTGT 59.717 47.619 0.50 0.00 0.00 3.72
745 812 1.402968 GAGGGCTGCATTATGTGTGTG 59.597 52.381 0.50 0.00 0.00 3.82
746 813 1.176527 GGGCTGCATTATGTGTGTGT 58.823 50.000 0.50 0.00 0.00 3.72
747 814 2.026356 AGGGCTGCATTATGTGTGTGTA 60.026 45.455 0.50 0.00 0.00 2.90
748 815 2.355756 GGGCTGCATTATGTGTGTGTAG 59.644 50.000 0.50 0.00 0.00 2.74
749 816 2.223340 GGCTGCATTATGTGTGTGTAGC 60.223 50.000 0.50 6.19 46.45 3.58
750 817 2.679837 GCTGCATTATGTGTGTGTAGCT 59.320 45.455 7.30 0.00 44.65 3.32
751 818 3.127548 GCTGCATTATGTGTGTGTAGCTT 59.872 43.478 7.30 0.00 44.65 3.74
752 819 4.655027 CTGCATTATGTGTGTGTAGCTTG 58.345 43.478 0.00 0.00 0.00 4.01
753 820 3.119884 TGCATTATGTGTGTGTAGCTTGC 60.120 43.478 0.00 0.00 0.00 4.01
754 821 3.119884 GCATTATGTGTGTGTAGCTTGCA 60.120 43.478 0.00 0.00 0.00 4.08
755 822 4.406069 CATTATGTGTGTGTAGCTTGCAC 58.594 43.478 12.46 12.46 37.37 4.57
756 823 1.238439 ATGTGTGTGTAGCTTGCACC 58.762 50.000 15.51 9.37 36.11 5.01
757 824 0.107459 TGTGTGTGTAGCTTGCACCA 60.107 50.000 15.51 11.23 36.11 4.17
758 825 1.238439 GTGTGTGTAGCTTGCACCAT 58.762 50.000 15.51 0.00 36.11 3.55
759 826 2.224402 TGTGTGTGTAGCTTGCACCATA 60.224 45.455 15.51 10.02 36.11 2.74
760 827 2.811431 GTGTGTGTAGCTTGCACCATAA 59.189 45.455 15.51 0.00 36.11 1.90
761 828 2.811431 TGTGTGTAGCTTGCACCATAAC 59.189 45.455 15.51 9.32 36.11 1.89
762 829 2.073056 TGTGTAGCTTGCACCATAACG 58.927 47.619 15.51 0.00 36.11 3.18
763 830 1.083489 TGTAGCTTGCACCATAACGC 58.917 50.000 0.00 0.00 0.00 4.84
764 831 1.083489 GTAGCTTGCACCATAACGCA 58.917 50.000 0.00 0.00 36.05 5.24
765 832 1.670811 GTAGCTTGCACCATAACGCAT 59.329 47.619 0.00 0.00 38.10 4.73
766 833 1.176527 AGCTTGCACCATAACGCATT 58.823 45.000 0.00 0.00 38.10 3.56
767 834 1.545582 AGCTTGCACCATAACGCATTT 59.454 42.857 0.00 0.00 38.10 2.32
768 835 1.919918 GCTTGCACCATAACGCATTTC 59.080 47.619 0.00 0.00 38.10 2.17
769 836 2.670789 GCTTGCACCATAACGCATTTCA 60.671 45.455 0.00 0.00 38.10 2.69
770 837 3.772932 CTTGCACCATAACGCATTTCAT 58.227 40.909 0.00 0.00 38.10 2.57
771 838 3.419264 TGCACCATAACGCATTTCATC 57.581 42.857 0.00 0.00 31.95 2.92
772 839 2.751806 TGCACCATAACGCATTTCATCA 59.248 40.909 0.00 0.00 31.95 3.07
773 840 3.380954 TGCACCATAACGCATTTCATCAT 59.619 39.130 0.00 0.00 31.95 2.45
774 841 4.578105 TGCACCATAACGCATTTCATCATA 59.422 37.500 0.00 0.00 31.95 2.15
775 842 5.067023 TGCACCATAACGCATTTCATCATAA 59.933 36.000 0.00 0.00 31.95 1.90
776 843 6.151691 GCACCATAACGCATTTCATCATAAT 58.848 36.000 0.00 0.00 0.00 1.28
777 844 6.306356 GCACCATAACGCATTTCATCATAATC 59.694 38.462 0.00 0.00 0.00 1.75
778 845 7.587629 CACCATAACGCATTTCATCATAATCT 58.412 34.615 0.00 0.00 0.00 2.40
779 846 8.077991 CACCATAACGCATTTCATCATAATCTT 58.922 33.333 0.00 0.00 0.00 2.40
780 847 8.632679 ACCATAACGCATTTCATCATAATCTTT 58.367 29.630 0.00 0.00 0.00 2.52
781 848 9.467258 CCATAACGCATTTCATCATAATCTTTT 57.533 29.630 0.00 0.00 0.00 2.27
813 880 3.844211 TGCAGTGTAAATCCCTAGGTTCT 59.156 43.478 8.29 0.00 0.00 3.01
944 1023 2.097038 CCGTGCCAGCGAAGAAGAG 61.097 63.158 0.00 0.00 0.00 2.85
1004 1084 1.479389 GGGCCAAAATCGGAGGATGAT 60.479 52.381 4.39 0.00 31.83 2.45
1017 1097 4.624882 CGGAGGATGATGAATCTTCGATTC 59.375 45.833 9.12 9.12 41.27 2.52
1029 1109 2.755655 TCTTCGATTCTTCGCCTCTCTT 59.244 45.455 0.00 0.00 45.10 2.85
1131 1213 0.253347 TCTCTCTGCCCCTCCCAATT 60.253 55.000 0.00 0.00 0.00 2.32
1200 1285 1.544691 TCCTTCGAAGAAGAACCTCCG 59.455 52.381 26.61 5.61 45.90 4.63
1203 1288 1.325355 TCGAAGAAGAACCTCCGTGT 58.675 50.000 0.00 0.00 0.00 4.49
1244 1332 4.499019 GCTCTGACAGGTAGCTCAACTATC 60.499 50.000 8.53 0.00 32.15 2.08
1266 1354 3.374745 GCCACCATATTTTGCTCAATCG 58.625 45.455 0.00 0.00 0.00 3.34
1275 1363 9.639601 CCATATTTTGCTCAATCGATACTAGTA 57.360 33.333 4.77 4.77 0.00 1.82
1283 1371 6.973474 GCTCAATCGATACTAGTACACTGTTT 59.027 38.462 4.31 0.00 0.00 2.83
1310 1398 1.502231 CGCTCTATCCCCAAATCGTG 58.498 55.000 0.00 0.00 0.00 4.35
1311 1399 1.202533 CGCTCTATCCCCAAATCGTGT 60.203 52.381 0.00 0.00 0.00 4.49
1321 1409 3.489059 CCCCAAATCGTGTATGTTGCATC 60.489 47.826 0.00 0.00 0.00 3.91
1325 1413 5.220912 CCAAATCGTGTATGTTGCATCTGAT 60.221 40.000 0.00 0.00 0.00 2.90
1333 1423 5.525012 TGTATGTTGCATCTGATAACTGCTC 59.475 40.000 3.02 0.00 36.84 4.26
1336 1426 3.189618 TGCATCTGATAACTGCTCCTG 57.810 47.619 3.02 0.00 36.84 3.86
1340 1430 4.443457 GCATCTGATAACTGCTCCTGGTAA 60.443 45.833 0.00 0.00 33.15 2.85
1447 1710 2.742428 AACATATCCATGCTGGCACT 57.258 45.000 0.00 0.00 37.47 4.40
1463 1726 1.946283 GCACTGGCAGTAGAAAGGACC 60.946 57.143 21.59 0.00 40.72 4.46
1465 1728 2.054799 ACTGGCAGTAGAAAGGACCAA 58.945 47.619 20.61 0.00 0.00 3.67
1487 1750 7.338800 CAATTCTTGGGCTTAGTATGTTGAT 57.661 36.000 0.00 0.00 0.00 2.57
1490 1753 4.640201 TCTTGGGCTTAGTATGTTGATTGC 59.360 41.667 0.00 0.00 0.00 3.56
1532 1803 8.012241 GTCCATATTATTCAGTTTGATTCGCTC 58.988 37.037 0.00 0.00 0.00 5.03
1544 1815 0.462759 ATTCGCTCTGCCCAGCTTAC 60.463 55.000 2.77 0.00 37.25 2.34
1672 1943 7.861630 TCTAAAGAACAATGCTGTAACTGAAC 58.138 34.615 0.00 0.00 33.45 3.18
1674 1945 2.969443 ACAATGCTGTAACTGAACGC 57.031 45.000 0.00 0.00 32.54 4.84
1678 1949 1.948104 TGCTGTAACTGAACGCTTGT 58.052 45.000 0.00 0.00 0.00 3.16
1683 1954 4.495844 GCTGTAACTGAACGCTTGTTTTCT 60.496 41.667 0.00 0.00 35.50 2.52
1710 1981 3.563808 GCAAATGGCTCATCAATACCGTA 59.436 43.478 0.00 0.00 40.25 4.02
1713 1984 6.735694 GCAAATGGCTCATCAATACCGTAATT 60.736 38.462 0.00 0.00 40.25 1.40
1714 1985 5.947228 ATGGCTCATCAATACCGTAATTG 57.053 39.130 1.55 1.55 38.05 2.32
1715 1986 4.133820 TGGCTCATCAATACCGTAATTGG 58.866 43.478 7.01 0.00 37.44 3.16
1716 1987 4.141597 TGGCTCATCAATACCGTAATTGGA 60.142 41.667 7.01 0.00 37.44 3.53
1717 1988 4.452455 GGCTCATCAATACCGTAATTGGAG 59.548 45.833 7.01 7.55 37.44 3.86
1718 1989 5.297547 GCTCATCAATACCGTAATTGGAGA 58.702 41.667 12.96 8.48 37.44 3.71
1719 1990 5.934625 GCTCATCAATACCGTAATTGGAGAT 59.065 40.000 12.96 0.00 37.44 2.75
1720 1991 6.128445 GCTCATCAATACCGTAATTGGAGATG 60.128 42.308 12.96 0.00 37.44 2.90
1721 1992 5.700832 TCATCAATACCGTAATTGGAGATGC 59.299 40.000 7.01 0.00 37.44 3.91
1722 1993 5.290493 TCAATACCGTAATTGGAGATGCT 57.710 39.130 7.01 0.00 37.44 3.79
1723 1994 6.413783 TCAATACCGTAATTGGAGATGCTA 57.586 37.500 7.01 0.00 37.44 3.49
1724 1995 6.455647 TCAATACCGTAATTGGAGATGCTAG 58.544 40.000 7.01 0.00 37.44 3.42
1725 1996 6.266786 TCAATACCGTAATTGGAGATGCTAGA 59.733 38.462 0.00 0.00 37.44 2.43
1726 1997 6.859112 ATACCGTAATTGGAGATGCTAGAT 57.141 37.500 0.00 0.00 0.00 1.98
1728 1999 4.835615 ACCGTAATTGGAGATGCTAGATCT 59.164 41.667 0.00 0.00 0.00 2.75
1730 2001 6.151985 ACCGTAATTGGAGATGCTAGATCTAG 59.848 42.308 23.20 23.20 36.29 2.43
1742 2013 4.582701 CTAGATCTAGCTGTCAGTTGGG 57.417 50.000 16.68 0.00 0.00 4.12
1743 2014 2.826488 AGATCTAGCTGTCAGTTGGGT 58.174 47.619 0.00 0.00 0.00 4.51
1744 2015 3.177228 AGATCTAGCTGTCAGTTGGGTT 58.823 45.455 0.00 0.00 0.00 4.11
1745 2016 3.584848 AGATCTAGCTGTCAGTTGGGTTT 59.415 43.478 0.00 0.00 0.00 3.27
1747 2018 4.537135 TCTAGCTGTCAGTTGGGTTTAG 57.463 45.455 0.00 0.00 0.00 1.85
1749 2020 1.421646 AGCTGTCAGTTGGGTTTAGCT 59.578 47.619 0.93 0.00 35.40 3.32
1750 2021 2.637872 AGCTGTCAGTTGGGTTTAGCTA 59.362 45.455 0.93 0.00 38.17 3.32
1751 2022 3.264450 AGCTGTCAGTTGGGTTTAGCTAT 59.736 43.478 0.93 0.00 38.17 2.97
1752 2023 4.010349 GCTGTCAGTTGGGTTTAGCTATT 58.990 43.478 0.93 0.00 0.00 1.73
1753 2024 5.045869 AGCTGTCAGTTGGGTTTAGCTATTA 60.046 40.000 0.93 0.00 38.17 0.98
1754 2025 5.064834 GCTGTCAGTTGGGTTTAGCTATTAC 59.935 44.000 0.93 0.00 0.00 1.89
1757 2028 6.441284 TGTCAGTTGGGTTTAGCTATTACCTA 59.559 38.462 19.43 13.79 32.46 3.08
1758 2029 6.985059 GTCAGTTGGGTTTAGCTATTACCTAG 59.015 42.308 19.43 7.49 32.46 3.02
1759 2030 6.099269 TCAGTTGGGTTTAGCTATTACCTAGG 59.901 42.308 19.43 7.41 32.46 3.02
1760 2031 6.099269 CAGTTGGGTTTAGCTATTACCTAGGA 59.901 42.308 17.98 0.00 32.46 2.94
1761 2032 6.326843 AGTTGGGTTTAGCTATTACCTAGGAG 59.673 42.308 17.98 2.88 32.46 3.69
1762 2033 4.591924 TGGGTTTAGCTATTACCTAGGAGC 59.408 45.833 17.98 14.12 35.07 4.70
1763 2034 4.020396 GGGTTTAGCTATTACCTAGGAGCC 60.020 50.000 17.98 3.87 35.45 4.70
1764 2035 4.321824 GGTTTAGCTATTACCTAGGAGCCG 60.322 50.000 17.98 0.57 35.45 5.52
1766 2037 2.960163 AGCTATTACCTAGGAGCCGTT 58.040 47.619 17.98 0.00 35.45 4.44
1767 2038 2.628657 AGCTATTACCTAGGAGCCGTTG 59.371 50.000 17.98 0.35 35.45 4.10
1768 2039 2.626743 GCTATTACCTAGGAGCCGTTGA 59.373 50.000 17.98 0.00 0.00 3.18
1769 2040 3.258622 GCTATTACCTAGGAGCCGTTGAT 59.741 47.826 17.98 0.00 0.00 2.57
1770 2041 4.262506 GCTATTACCTAGGAGCCGTTGATT 60.263 45.833 17.98 0.00 0.00 2.57
1771 2042 5.047519 GCTATTACCTAGGAGCCGTTGATTA 60.048 44.000 17.98 0.00 0.00 1.75
1775 2138 3.454812 ACCTAGGAGCCGTTGATTACAAT 59.545 43.478 17.98 0.00 38.32 2.71
1782 2145 2.874849 CCGTTGATTACAATTGGTGGC 58.125 47.619 10.83 0.00 38.32 5.01
1793 2156 4.210331 ACAATTGGTGGCTCCTGAATATC 58.790 43.478 10.83 0.00 37.07 1.63
1798 2161 2.549778 GGTGGCTCCTGAATATCTCTGC 60.550 54.545 0.00 0.00 0.00 4.26
1811 2174 7.910584 TGAATATCTCTGCTGCTGGAATATAA 58.089 34.615 6.69 1.83 0.00 0.98
1812 2175 8.546322 TGAATATCTCTGCTGCTGGAATATAAT 58.454 33.333 6.69 0.00 0.00 1.28
1813 2176 8.734218 AATATCTCTGCTGCTGGAATATAATG 57.266 34.615 6.69 0.00 0.00 1.90
1814 2177 4.321718 TCTCTGCTGCTGGAATATAATGC 58.678 43.478 6.69 0.00 0.00 3.56
1815 2178 4.041321 TCTCTGCTGCTGGAATATAATGCT 59.959 41.667 6.69 0.00 0.00 3.79
1816 2179 4.722220 TCTGCTGCTGGAATATAATGCTT 58.278 39.130 6.69 0.00 0.00 3.91
1817 2180 4.758674 TCTGCTGCTGGAATATAATGCTTC 59.241 41.667 6.69 0.00 0.00 3.86
1818 2181 3.822735 TGCTGCTGGAATATAATGCTTCC 59.177 43.478 0.00 0.00 41.13 3.46
1819 2182 4.077822 GCTGCTGGAATATAATGCTTCCT 58.922 43.478 4.81 0.00 41.29 3.36
1820 2183 4.155644 GCTGCTGGAATATAATGCTTCCTC 59.844 45.833 4.81 0.00 41.29 3.71
1821 2184 5.558818 CTGCTGGAATATAATGCTTCCTCT 58.441 41.667 4.81 0.00 41.29 3.69
1822 2185 5.311265 TGCTGGAATATAATGCTTCCTCTG 58.689 41.667 4.81 0.00 41.29 3.35
1823 2186 5.163163 TGCTGGAATATAATGCTTCCTCTGT 60.163 40.000 4.81 0.00 41.29 3.41
1824 2187 6.043127 TGCTGGAATATAATGCTTCCTCTGTA 59.957 38.462 4.81 0.00 41.29 2.74
1825 2188 6.936900 GCTGGAATATAATGCTTCCTCTGTAA 59.063 38.462 4.81 0.00 41.29 2.41
1826 2189 7.095017 GCTGGAATATAATGCTTCCTCTGTAAC 60.095 40.741 4.81 0.00 41.29 2.50
1827 2190 8.034313 TGGAATATAATGCTTCCTCTGTAACT 57.966 34.615 4.81 0.00 41.29 2.24
1828 2191 8.494433 TGGAATATAATGCTTCCTCTGTAACTT 58.506 33.333 4.81 0.00 41.29 2.66
1829 2192 9.998106 GGAATATAATGCTTCCTCTGTAACTTA 57.002 33.333 0.00 0.00 38.31 2.24
1861 2224 3.940209 TTTTGACACTGCCATGGATTC 57.060 42.857 18.40 3.74 0.00 2.52
1862 2225 2.885135 TTGACACTGCCATGGATTCT 57.115 45.000 18.40 0.00 0.00 2.40
1863 2226 3.998913 TTGACACTGCCATGGATTCTA 57.001 42.857 18.40 0.00 0.00 2.10
1864 2227 3.998913 TGACACTGCCATGGATTCTAA 57.001 42.857 18.40 0.00 0.00 2.10
1865 2228 4.299586 TGACACTGCCATGGATTCTAAA 57.700 40.909 18.40 0.00 0.00 1.85
1866 2229 4.858850 TGACACTGCCATGGATTCTAAAT 58.141 39.130 18.40 0.00 0.00 1.40
1867 2230 6.000246 TGACACTGCCATGGATTCTAAATA 58.000 37.500 18.40 0.00 0.00 1.40
1868 2231 5.822519 TGACACTGCCATGGATTCTAAATAC 59.177 40.000 18.40 0.00 0.00 1.89
1869 2232 4.816385 ACACTGCCATGGATTCTAAATACG 59.184 41.667 18.40 0.00 0.00 3.06
1870 2233 4.816385 CACTGCCATGGATTCTAAATACGT 59.184 41.667 18.40 0.00 0.00 3.57
1871 2234 5.050091 CACTGCCATGGATTCTAAATACGTC 60.050 44.000 18.40 0.00 0.00 4.34
1872 2235 5.163301 ACTGCCATGGATTCTAAATACGTCT 60.163 40.000 18.40 0.00 0.00 4.18
1873 2236 5.680619 TGCCATGGATTCTAAATACGTCTT 58.319 37.500 18.40 0.00 0.00 3.01
1874 2237 6.822442 TGCCATGGATTCTAAATACGTCTTA 58.178 36.000 18.40 0.00 0.00 2.10
1875 2238 7.450074 TGCCATGGATTCTAAATACGTCTTAT 58.550 34.615 18.40 0.00 0.00 1.73
1876 2239 8.590204 TGCCATGGATTCTAAATACGTCTTATA 58.410 33.333 18.40 0.00 0.00 0.98
1877 2240 9.431887 GCCATGGATTCTAAATACGTCTTATAA 57.568 33.333 18.40 0.00 0.00 0.98
1892 2255 7.384477 ACGTCTTATAAAAAGTTACAGAGGCT 58.616 34.615 0.00 0.00 29.02 4.58
1894 2257 7.544566 CGTCTTATAAAAAGTTACAGAGGCTGA 59.455 37.037 0.00 0.00 35.18 4.26
1952 2315 9.599322 CTATCAAGTCTAACAACAAAATGTGTC 57.401 33.333 0.00 0.00 40.60 3.67
1953 2316 7.384439 TCAAGTCTAACAACAAAATGTGTCA 57.616 32.000 0.00 0.00 40.60 3.58
1954 2317 7.995289 TCAAGTCTAACAACAAAATGTGTCAT 58.005 30.769 0.00 0.00 40.60 3.06
1955 2318 7.914871 TCAAGTCTAACAACAAAATGTGTCATG 59.085 33.333 0.00 0.00 40.60 3.07
1956 2319 6.208644 AGTCTAACAACAAAATGTGTCATGC 58.791 36.000 0.00 0.00 40.60 4.06
1962 2325 2.363038 ACAAAATGTGTCATGCTGCAGT 59.637 40.909 16.64 0.00 34.38 4.40
1964 2327 3.293311 AAATGTGTCATGCTGCAGTTC 57.707 42.857 16.64 0.00 0.00 3.01
1971 2334 0.242825 CATGCTGCAGTTCACCAAGG 59.757 55.000 16.64 0.00 0.00 3.61
1976 2339 1.228245 GCAGTTCACCAAGGCAGGA 60.228 57.895 2.81 0.00 0.00 3.86
2031 2498 5.551760 ATTTGAAATAACAGAGTCGGCAG 57.448 39.130 0.00 0.00 0.00 4.85
2032 2499 3.953712 TGAAATAACAGAGTCGGCAGA 57.046 42.857 0.00 0.00 0.00 4.26
2040 2507 3.679389 ACAGAGTCGGCAGATGATTTTT 58.321 40.909 0.00 0.00 0.00 1.94
2045 2512 5.416952 AGAGTCGGCAGATGATTTTTGATTT 59.583 36.000 0.00 0.00 0.00 2.17
2053 2520 6.129613 GCAGATGATTTTTGATTTACGCGATC 60.130 38.462 15.93 6.16 0.00 3.69
2054 2521 7.128331 CAGATGATTTTTGATTTACGCGATCT 58.872 34.615 15.93 1.72 0.00 2.75
2106 2573 0.032540 CAAAGGCTTGTCACTTGGCC 59.967 55.000 0.00 0.00 44.38 5.36
2112 2579 0.670162 CTTGTCACTTGGCCCTGTTG 59.330 55.000 0.00 0.00 0.00 3.33
2117 2584 1.071471 ACTTGGCCCTGTTGTCTCG 59.929 57.895 0.00 0.00 0.00 4.04
2138 2605 2.570302 GCTGGGTTCCTTACCTGTCTTA 59.430 50.000 0.00 0.00 46.86 2.10
2141 2608 2.093075 GGGTTCCTTACCTGTCTTAGCC 60.093 54.545 0.00 0.00 46.86 3.93
2185 2652 1.144936 CGAATCCAGAGGAGCCACC 59.855 63.158 0.00 0.00 34.05 4.61
2217 2703 5.247110 GGTATGAAATAGATCTCCTGCCTCA 59.753 44.000 0.00 0.00 0.00 3.86
2222 2708 7.448420 TGAAATAGATCTCCTGCCTCATTTAG 58.552 38.462 0.00 0.00 0.00 1.85
2241 2727 3.953201 GCATTGCCTAGCCATGAAC 57.047 52.632 4.94 0.00 34.22 3.18
2356 2845 0.097674 GCACAAGCGCAGATACAAGG 59.902 55.000 11.47 0.00 0.00 3.61
2361 2850 0.179134 AGCGCAGATACAAGGACGAC 60.179 55.000 11.47 0.00 0.00 4.34
2373 2862 2.100603 GACGACGAGGAGAAGGCG 59.899 66.667 0.00 0.00 0.00 5.52
2374 2863 2.672307 ACGACGAGGAGAAGGCGT 60.672 61.111 0.00 0.00 41.45 5.68
2430 2919 4.961511 AACGAGCTCAACGCCGCA 62.962 61.111 15.40 0.00 40.39 5.69
2700 3189 0.962489 AGTCGTCCTGAGTGGTGAAG 59.038 55.000 0.00 0.00 37.07 3.02
2736 3225 5.036117 AGCTTCCATCGGTGTGTTATATT 57.964 39.130 0.00 0.00 0.00 1.28
2940 3916 2.932614 GCATGACGCATGATATACTCCC 59.067 50.000 19.56 0.32 43.81 4.30
2941 3917 3.368843 GCATGACGCATGATATACTCCCT 60.369 47.826 19.56 0.00 43.81 4.20
2942 3918 4.428209 CATGACGCATGATATACTCCCTC 58.572 47.826 12.63 0.00 43.81 4.30
2943 3919 2.826128 TGACGCATGATATACTCCCTCC 59.174 50.000 0.00 0.00 0.00 4.30
2944 3920 1.819288 ACGCATGATATACTCCCTCCG 59.181 52.381 0.00 0.00 0.00 4.63
2945 3921 1.819288 CGCATGATATACTCCCTCCGT 59.181 52.381 0.00 0.00 0.00 4.69
2946 3922 3.014623 CGCATGATATACTCCCTCCGTA 58.985 50.000 0.00 0.00 0.00 4.02
2947 3923 3.442625 CGCATGATATACTCCCTCCGTAA 59.557 47.826 0.00 0.00 0.00 3.18
2948 3924 4.082408 CGCATGATATACTCCCTCCGTAAA 60.082 45.833 0.00 0.00 0.00 2.01
2949 3925 5.169295 GCATGATATACTCCCTCCGTAAAC 58.831 45.833 0.00 0.00 0.00 2.01
2950 3926 5.279306 GCATGATATACTCCCTCCGTAAACA 60.279 44.000 0.00 0.00 0.00 2.83
2951 3927 6.740401 GCATGATATACTCCCTCCGTAAACAA 60.740 42.308 0.00 0.00 0.00 2.83
2952 3928 6.795144 TGATATACTCCCTCCGTAAACAAA 57.205 37.500 0.00 0.00 0.00 2.83
2953 3929 7.369551 TGATATACTCCCTCCGTAAACAAAT 57.630 36.000 0.00 0.00 0.00 2.32
2954 3930 8.481492 TGATATACTCCCTCCGTAAACAAATA 57.519 34.615 0.00 0.00 0.00 1.40
2955 3931 9.096823 TGATATACTCCCTCCGTAAACAAATAT 57.903 33.333 0.00 0.00 0.00 1.28
2960 3936 8.502105 ACTCCCTCCGTAAACAAATATAAAAG 57.498 34.615 0.00 0.00 0.00 2.27
2961 3937 7.066645 ACTCCCTCCGTAAACAAATATAAAAGC 59.933 37.037 0.00 0.00 0.00 3.51
2962 3938 6.037391 TCCCTCCGTAAACAAATATAAAAGCG 59.963 38.462 0.00 0.00 0.00 4.68
2963 3939 6.183360 CCCTCCGTAAACAAATATAAAAGCGT 60.183 38.462 0.00 0.00 0.00 5.07
2964 3940 7.245604 CCTCCGTAAACAAATATAAAAGCGTT 58.754 34.615 0.00 0.00 0.00 4.84
2965 3941 7.751793 CCTCCGTAAACAAATATAAAAGCGTTT 59.248 33.333 2.53 2.53 0.00 3.60
2966 3942 9.757859 CTCCGTAAACAAATATAAAAGCGTTTA 57.242 29.630 7.30 7.30 33.76 2.01
2967 3943 9.757859 TCCGTAAACAAATATAAAAGCGTTTAG 57.242 29.630 10.55 0.00 32.76 1.85
2968 3944 9.757859 CCGTAAACAAATATAAAAGCGTTTAGA 57.242 29.630 10.55 6.46 32.76 2.10
2981 3957 8.828688 AAAAGCGTTTAGATCACTAAAGTAGT 57.171 30.769 0.00 0.00 45.42 2.73
2982 3958 9.918630 AAAAGCGTTTAGATCACTAAAGTAGTA 57.081 29.630 0.00 0.00 45.42 1.82
2983 3959 9.918630 AAAGCGTTTAGATCACTAAAGTAGTAA 57.081 29.630 0.00 0.00 45.42 2.24
2985 3961 9.733219 AGCGTTTAGATCACTAAAGTAGTAATC 57.267 33.333 0.00 0.00 45.42 1.75
2986 3962 9.733219 GCGTTTAGATCACTAAAGTAGTAATCT 57.267 33.333 6.37 6.37 44.17 2.40
3222 7681 7.030165 CACAACATCAACTCTATCTTACGACT 58.970 38.462 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.733344 ATGTTCGGGATGGGACGCG 62.733 63.158 3.53 3.53 45.12 6.01
28 29 2.904434 GGGGATCCTATACGTGGATGTT 59.096 50.000 12.58 0.00 43.68 2.71
32 33 2.291411 GCTAGGGGATCCTATACGTGGA 60.291 54.545 12.58 0.00 44.11 4.02
40 41 0.487772 GAGGTGGCTAGGGGATCCTA 59.512 60.000 12.58 0.00 44.38 2.94
41 42 1.237458 GAGGTGGCTAGGGGATCCT 59.763 63.158 12.58 0.00 46.96 3.24
49 50 0.106918 ACGAGAGGAGAGGTGGCTAG 60.107 60.000 0.00 0.00 0.00 3.42
50 51 0.394488 CACGAGAGGAGAGGTGGCTA 60.394 60.000 0.00 0.00 0.00 3.93
141 142 1.078426 AATTAGGAACCGCAGCGCT 60.078 52.632 10.07 2.64 0.00 5.92
310 373 0.178301 TGTTGTGCCCGTGAACACTA 59.822 50.000 3.51 0.00 37.68 2.74
337 400 4.021102 AGATTATAATGGACCCCTTGCG 57.979 45.455 1.78 0.00 0.00 4.85
396 459 3.513515 TCAGCTGAACAAACAAAAGGGTT 59.486 39.130 15.67 0.00 0.00 4.11
408 472 3.476552 CCCACTAGTTTTCAGCTGAACA 58.523 45.455 28.46 19.92 33.13 3.18
419 483 0.400594 GACACAGGGCCCACTAGTTT 59.599 55.000 27.56 9.87 0.00 2.66
420 484 0.473886 AGACACAGGGCCCACTAGTT 60.474 55.000 27.56 1.73 0.00 2.24
424 488 0.473886 AGTTAGACACAGGGCCCACT 60.474 55.000 27.56 13.40 0.00 4.00
434 498 5.971895 TTGTTGACCGTTAAGTTAGACAC 57.028 39.130 0.00 0.00 0.00 3.67
469 533 2.026641 AGCGCTGACATGGCATAAAAT 58.973 42.857 10.39 0.00 0.00 1.82
470 534 1.462616 AGCGCTGACATGGCATAAAA 58.537 45.000 10.39 0.00 0.00 1.52
506 571 7.201767 GGGATGATTTAGTCCAATTTCTGACAG 60.202 40.741 0.00 0.00 36.19 3.51
577 643 3.605946 TGGCGCCCCAAAAATCTAT 57.394 47.368 26.77 0.00 38.46 1.98
614 681 5.049060 CACCACATTTTAAGTTCACATCCGA 60.049 40.000 0.00 0.00 0.00 4.55
641 708 5.005394 GCAGCATATGAGTGAATTGCAAAAG 59.995 40.000 6.97 0.00 35.79 2.27
659 726 6.538021 TGACAAAACTGTTATTTTTGCAGCAT 59.462 30.769 0.00 0.00 44.43 3.79
660 727 5.871524 TGACAAAACTGTTATTTTTGCAGCA 59.128 32.000 7.33 0.00 44.43 4.41
661 728 6.343226 TGACAAAACTGTTATTTTTGCAGC 57.657 33.333 7.33 0.00 44.43 5.25
662 729 8.063630 GGAATGACAAAACTGTTATTTTTGCAG 58.936 33.333 7.33 0.00 44.43 4.41
663 730 7.768120 AGGAATGACAAAACTGTTATTTTTGCA 59.232 29.630 7.33 7.11 44.43 4.08
664 731 8.141835 AGGAATGACAAAACTGTTATTTTTGC 57.858 30.769 7.33 2.61 44.43 3.68
672 739 8.974060 TCTTAAGTAGGAATGACAAAACTGTT 57.026 30.769 1.63 0.00 0.00 3.16
673 740 9.220767 GATCTTAAGTAGGAATGACAAAACTGT 57.779 33.333 1.63 0.00 0.00 3.55
674 741 9.219603 TGATCTTAAGTAGGAATGACAAAACTG 57.780 33.333 1.63 0.00 0.00 3.16
675 742 9.965902 ATGATCTTAAGTAGGAATGACAAAACT 57.034 29.630 1.63 0.00 0.00 2.66
676 743 9.994432 CATGATCTTAAGTAGGAATGACAAAAC 57.006 33.333 1.63 0.00 0.00 2.43
677 744 8.677300 GCATGATCTTAAGTAGGAATGACAAAA 58.323 33.333 1.63 0.00 0.00 2.44
678 745 7.828717 TGCATGATCTTAAGTAGGAATGACAAA 59.171 33.333 1.63 0.00 0.00 2.83
679 746 7.337938 TGCATGATCTTAAGTAGGAATGACAA 58.662 34.615 1.63 0.00 0.00 3.18
680 747 6.888105 TGCATGATCTTAAGTAGGAATGACA 58.112 36.000 1.63 2.40 0.00 3.58
681 748 7.572724 GCATGCATGATCTTAAGTAGGAATGAC 60.573 40.741 30.64 1.38 0.00 3.06
682 749 6.429078 GCATGCATGATCTTAAGTAGGAATGA 59.571 38.462 30.64 0.00 0.00 2.57
683 750 6.349115 GGCATGCATGATCTTAAGTAGGAATG 60.349 42.308 30.64 0.00 0.00 2.67
684 751 5.709164 GGCATGCATGATCTTAAGTAGGAAT 59.291 40.000 30.64 0.00 0.00 3.01
685 752 5.065914 GGCATGCATGATCTTAAGTAGGAA 58.934 41.667 30.64 0.00 0.00 3.36
686 753 4.645535 GGCATGCATGATCTTAAGTAGGA 58.354 43.478 30.64 0.00 0.00 2.94
687 754 3.434641 CGGCATGCATGATCTTAAGTAGG 59.565 47.826 30.64 0.00 0.00 3.18
688 755 4.151335 GTCGGCATGCATGATCTTAAGTAG 59.849 45.833 30.64 7.68 0.00 2.57
689 756 4.058124 GTCGGCATGCATGATCTTAAGTA 58.942 43.478 30.64 1.49 0.00 2.24
690 757 2.874701 GTCGGCATGCATGATCTTAAGT 59.125 45.455 30.64 0.00 0.00 2.24
691 758 2.874086 TGTCGGCATGCATGATCTTAAG 59.126 45.455 30.64 11.58 0.00 1.85
692 759 2.613595 GTGTCGGCATGCATGATCTTAA 59.386 45.455 30.64 7.54 0.00 1.85
693 760 2.212652 GTGTCGGCATGCATGATCTTA 58.787 47.619 30.64 9.86 0.00 2.10
694 761 1.019673 GTGTCGGCATGCATGATCTT 58.980 50.000 30.64 0.00 0.00 2.40
695 762 0.816825 GGTGTCGGCATGCATGATCT 60.817 55.000 30.64 0.00 0.00 2.75
696 763 1.650912 GGTGTCGGCATGCATGATC 59.349 57.895 30.64 18.82 0.00 2.92
697 764 1.825191 GGGTGTCGGCATGCATGAT 60.825 57.895 30.64 0.00 0.00 2.45
698 765 2.438254 GGGTGTCGGCATGCATGA 60.438 61.111 30.64 13.97 0.00 3.07
699 766 2.067091 GATGGGTGTCGGCATGCATG 62.067 60.000 22.70 22.70 0.00 4.06
700 767 1.825191 GATGGGTGTCGGCATGCAT 60.825 57.895 21.36 0.63 0.00 3.96
701 768 2.438254 GATGGGTGTCGGCATGCA 60.438 61.111 21.36 0.00 0.00 3.96
702 769 2.045708 TTGATGGGTGTCGGCATGC 61.046 57.895 9.90 9.90 0.00 4.06
703 770 0.959867 TGTTGATGGGTGTCGGCATG 60.960 55.000 0.00 0.00 0.00 4.06
704 771 0.677731 CTGTTGATGGGTGTCGGCAT 60.678 55.000 0.00 0.00 0.00 4.40
705 772 1.302431 CTGTTGATGGGTGTCGGCA 60.302 57.895 0.00 0.00 0.00 5.69
706 773 1.003839 TCTGTTGATGGGTGTCGGC 60.004 57.895 0.00 0.00 0.00 5.54
707 774 0.608130 TCTCTGTTGATGGGTGTCGG 59.392 55.000 0.00 0.00 0.00 4.79
708 775 1.404717 CCTCTCTGTTGATGGGTGTCG 60.405 57.143 0.00 0.00 0.00 4.35
709 776 1.065854 CCCTCTCTGTTGATGGGTGTC 60.066 57.143 0.00 0.00 33.79 3.67
710 777 0.987294 CCCTCTCTGTTGATGGGTGT 59.013 55.000 0.00 0.00 33.79 4.16
711 778 0.393537 GCCCTCTCTGTTGATGGGTG 60.394 60.000 0.00 0.00 37.82 4.61
712 779 0.548682 AGCCCTCTCTGTTGATGGGT 60.549 55.000 0.00 0.00 37.82 4.51
713 780 0.107312 CAGCCCTCTCTGTTGATGGG 60.107 60.000 0.00 0.00 38.25 4.00
714 781 0.747283 GCAGCCCTCTCTGTTGATGG 60.747 60.000 0.00 0.00 36.49 3.51
715 782 0.035725 TGCAGCCCTCTCTGTTGATG 60.036 55.000 0.00 0.00 36.49 3.07
716 783 0.917533 ATGCAGCCCTCTCTGTTGAT 59.082 50.000 0.00 0.00 36.49 2.57
717 784 0.694771 AATGCAGCCCTCTCTGTTGA 59.305 50.000 0.00 0.00 36.49 3.18
718 785 2.408271 TAATGCAGCCCTCTCTGTTG 57.592 50.000 0.00 0.00 36.49 3.33
719 786 2.240667 ACATAATGCAGCCCTCTCTGTT 59.759 45.455 0.00 0.00 36.49 3.16
720 787 1.842562 ACATAATGCAGCCCTCTCTGT 59.157 47.619 0.00 0.00 36.49 3.41
721 788 2.219458 CACATAATGCAGCCCTCTCTG 58.781 52.381 0.00 0.00 37.15 3.35
722 789 1.842562 ACACATAATGCAGCCCTCTCT 59.157 47.619 0.00 0.00 0.00 3.10
723 790 1.945394 CACACATAATGCAGCCCTCTC 59.055 52.381 0.00 0.00 0.00 3.20
724 791 1.283029 ACACACATAATGCAGCCCTCT 59.717 47.619 0.00 0.00 0.00 3.69
725 792 1.402968 CACACACATAATGCAGCCCTC 59.597 52.381 0.00 0.00 0.00 4.30
726 793 1.272092 ACACACACATAATGCAGCCCT 60.272 47.619 0.00 0.00 0.00 5.19
727 794 1.176527 ACACACACATAATGCAGCCC 58.823 50.000 0.00 0.00 0.00 5.19
728 795 2.223340 GCTACACACACATAATGCAGCC 60.223 50.000 0.00 0.00 0.00 4.85
729 796 2.679837 AGCTACACACACATAATGCAGC 59.320 45.455 0.00 0.00 0.00 5.25
730 797 4.655027 CAAGCTACACACACATAATGCAG 58.345 43.478 0.00 0.00 0.00 4.41
731 798 3.119884 GCAAGCTACACACACATAATGCA 60.120 43.478 0.00 0.00 0.00 3.96
732 799 3.119884 TGCAAGCTACACACACATAATGC 60.120 43.478 0.00 0.00 0.00 3.56
733 800 4.406069 GTGCAAGCTACACACACATAATG 58.594 43.478 13.45 0.00 37.96 1.90
734 801 3.440173 GGTGCAAGCTACACACACATAAT 59.560 43.478 18.48 0.00 39.87 1.28
735 802 2.811431 GGTGCAAGCTACACACACATAA 59.189 45.455 18.48 0.00 39.87 1.90
736 803 2.224402 TGGTGCAAGCTACACACACATA 60.224 45.455 18.48 1.14 39.87 2.29
737 804 1.238439 GGTGCAAGCTACACACACAT 58.762 50.000 18.48 0.00 39.87 3.21
738 805 0.107459 TGGTGCAAGCTACACACACA 60.107 50.000 18.48 10.03 39.87 3.72
739 806 1.238439 ATGGTGCAAGCTACACACAC 58.762 50.000 18.48 8.53 39.87 3.82
740 807 2.811431 GTTATGGTGCAAGCTACACACA 59.189 45.455 18.48 14.40 39.87 3.72
741 808 2.159707 CGTTATGGTGCAAGCTACACAC 60.160 50.000 18.48 12.24 39.87 3.82
742 809 2.073056 CGTTATGGTGCAAGCTACACA 58.927 47.619 18.48 7.84 39.87 3.72
743 810 1.202031 GCGTTATGGTGCAAGCTACAC 60.202 52.381 10.59 10.59 37.31 2.90
744 811 1.083489 GCGTTATGGTGCAAGCTACA 58.917 50.000 0.00 0.00 33.76 2.74
745 812 1.083489 TGCGTTATGGTGCAAGCTAC 58.917 50.000 0.00 0.00 38.34 3.58
746 813 2.036958 ATGCGTTATGGTGCAAGCTA 57.963 45.000 0.00 0.00 45.45 3.32
747 814 1.176527 AATGCGTTATGGTGCAAGCT 58.823 45.000 0.00 0.00 45.45 3.74
748 815 1.919918 GAAATGCGTTATGGTGCAAGC 59.080 47.619 0.00 0.00 45.45 4.01
749 816 3.214697 TGAAATGCGTTATGGTGCAAG 57.785 42.857 0.00 0.00 45.45 4.01
750 817 3.192212 TGATGAAATGCGTTATGGTGCAA 59.808 39.130 0.00 0.00 45.45 4.08
751 818 2.751806 TGATGAAATGCGTTATGGTGCA 59.248 40.909 0.00 0.00 46.51 4.57
752 819 3.419264 TGATGAAATGCGTTATGGTGC 57.581 42.857 0.00 0.00 0.00 5.01
753 820 7.587629 AGATTATGATGAAATGCGTTATGGTG 58.412 34.615 0.00 0.00 0.00 4.17
754 821 7.750229 AGATTATGATGAAATGCGTTATGGT 57.250 32.000 0.00 0.00 0.00 3.55
755 822 9.467258 AAAAGATTATGATGAAATGCGTTATGG 57.533 29.630 0.00 0.00 0.00 2.74
779 846 9.944376 GGGATTTACACTGCATCTCTATATAAA 57.056 33.333 0.00 0.00 0.00 1.40
780 847 9.326489 AGGGATTTACACTGCATCTCTATATAA 57.674 33.333 0.00 0.00 0.00 0.98
781 848 8.901472 AGGGATTTACACTGCATCTCTATATA 57.099 34.615 0.00 0.00 0.00 0.86
944 1023 2.489722 GGGTTTCAGAGATGAGTTTGCC 59.510 50.000 0.00 0.00 0.00 4.52
988 1068 6.565435 CGAAGATTCATCATCCTCCGATTTTG 60.565 42.308 0.00 0.00 31.20 2.44
1029 1109 4.373116 GACAGCCTTCCCGTCGCA 62.373 66.667 0.00 0.00 0.00 5.10
1131 1213 7.571025 AGAGGCGGAGATAATTAGGTTAAAAA 58.429 34.615 0.00 0.00 0.00 1.94
1135 1217 5.391256 TGAGAGGCGGAGATAATTAGGTTA 58.609 41.667 0.00 0.00 0.00 2.85
1200 1285 2.400896 AAATCCGCGCACACCAACAC 62.401 55.000 8.75 0.00 0.00 3.32
1203 1288 2.642129 CAAATCCGCGCACACCAA 59.358 55.556 8.75 0.00 0.00 3.67
1244 1332 2.937469 TTGAGCAAAATATGGTGGCG 57.063 45.000 0.00 0.00 40.59 5.69
1266 1354 7.008992 CGCCAAACTAAACAGTGTACTAGTATC 59.991 40.741 15.01 3.15 0.00 2.24
1275 1363 1.602377 GAGCGCCAAACTAAACAGTGT 59.398 47.619 2.29 0.00 0.00 3.55
1276 1364 1.873591 AGAGCGCCAAACTAAACAGTG 59.126 47.619 2.29 0.00 0.00 3.66
1283 1371 0.756903 GGGGATAGAGCGCCAAACTA 59.243 55.000 2.29 3.61 40.36 2.24
1310 1398 5.049818 GGAGCAGTTATCAGATGCAACATAC 60.050 44.000 0.00 0.00 42.45 2.39
1311 1399 5.059161 GGAGCAGTTATCAGATGCAACATA 58.941 41.667 0.00 0.00 42.45 2.29
1366 1626 6.990798 TCAAAACAATGGCAATTCTACATGA 58.009 32.000 0.00 0.00 0.00 3.07
1374 1634 8.351461 CAAATAAACCTCAAAACAATGGCAATT 58.649 29.630 0.00 0.00 0.00 2.32
1447 1710 3.330701 AGAATTGGTCCTTTCTACTGCCA 59.669 43.478 6.01 0.00 30.56 4.92
1465 1728 6.183360 GCAATCAACATACTAAGCCCAAGAAT 60.183 38.462 0.00 0.00 0.00 2.40
1487 1750 1.134340 ACCGACTGTAAACACCAGCAA 60.134 47.619 0.00 0.00 33.09 3.91
1490 1753 1.069513 TGGACCGACTGTAAACACCAG 59.930 52.381 0.00 0.00 36.01 4.00
1532 1803 0.320771 ACGAACTGTAAGCTGGGCAG 60.321 55.000 9.90 9.90 37.60 4.85
1661 1932 5.006746 AGAGAAAACAAGCGTTCAGTTACAG 59.993 40.000 0.00 0.00 32.91 2.74
1667 1938 3.605692 GCTCAGAGAAAACAAGCGTTCAG 60.606 47.826 0.00 0.00 32.91 3.02
1672 1943 3.338818 TTTGCTCAGAGAAAACAAGCG 57.661 42.857 0.00 0.00 35.74 4.68
1674 1945 3.985925 GCCATTTGCTCAGAGAAAACAAG 59.014 43.478 5.64 0.00 36.87 3.16
1704 1975 6.010850 AGATCTAGCATCTCCAATTACGGTA 58.989 40.000 0.00 0.00 0.00 4.02
1706 1977 5.398603 AGATCTAGCATCTCCAATTACGG 57.601 43.478 0.00 0.00 0.00 4.02
1721 1992 3.957497 ACCCAACTGACAGCTAGATCTAG 59.043 47.826 23.20 23.20 36.29 2.43
1722 1993 3.982516 ACCCAACTGACAGCTAGATCTA 58.017 45.455 1.25 1.69 0.00 1.98
1723 1994 2.826488 ACCCAACTGACAGCTAGATCT 58.174 47.619 1.25 0.00 0.00 2.75
1724 1995 3.618690 AACCCAACTGACAGCTAGATC 57.381 47.619 1.25 0.00 0.00 2.75
1725 1996 4.624125 GCTAAACCCAACTGACAGCTAGAT 60.624 45.833 1.25 0.00 0.00 1.98
1726 1997 3.306780 GCTAAACCCAACTGACAGCTAGA 60.307 47.826 1.25 0.00 0.00 2.43
1728 1999 2.637872 AGCTAAACCCAACTGACAGCTA 59.362 45.455 1.25 0.00 36.19 3.32
1730 2001 1.897560 AGCTAAACCCAACTGACAGC 58.102 50.000 1.25 0.00 0.00 4.40
1731 2002 5.585047 GGTAATAGCTAAACCCAACTGACAG 59.415 44.000 14.84 0.00 0.00 3.51
1734 2005 6.099269 CCTAGGTAATAGCTAAACCCAACTGA 59.901 42.308 19.84 4.09 33.53 3.41
1737 2008 6.490241 TCCTAGGTAATAGCTAAACCCAAC 57.510 41.667 19.84 4.22 33.53 3.77
1739 2010 4.591924 GCTCCTAGGTAATAGCTAAACCCA 59.408 45.833 19.84 9.80 33.53 4.51
1740 2011 4.020396 GGCTCCTAGGTAATAGCTAAACCC 60.020 50.000 19.84 10.37 35.30 4.11
1741 2012 4.321824 CGGCTCCTAGGTAATAGCTAAACC 60.322 50.000 17.20 17.09 35.30 3.27
1742 2013 4.280425 ACGGCTCCTAGGTAATAGCTAAAC 59.720 45.833 17.20 0.00 35.30 2.01
1743 2014 4.477249 ACGGCTCCTAGGTAATAGCTAAA 58.523 43.478 17.20 0.00 35.30 1.85
1744 2015 4.109877 ACGGCTCCTAGGTAATAGCTAA 57.890 45.455 17.20 0.00 35.30 3.09
1745 2016 3.803186 ACGGCTCCTAGGTAATAGCTA 57.197 47.619 17.20 0.00 35.30 3.32
1747 2018 2.626743 TCAACGGCTCCTAGGTAATAGC 59.373 50.000 9.08 10.19 0.00 2.97
1749 2020 5.834742 TGTAATCAACGGCTCCTAGGTAATA 59.165 40.000 9.08 0.00 0.00 0.98
1750 2021 4.652421 TGTAATCAACGGCTCCTAGGTAAT 59.348 41.667 9.08 0.00 0.00 1.89
1751 2022 4.025360 TGTAATCAACGGCTCCTAGGTAA 58.975 43.478 9.08 0.00 0.00 2.85
1752 2023 3.634504 TGTAATCAACGGCTCCTAGGTA 58.365 45.455 9.08 0.00 0.00 3.08
1753 2024 2.463752 TGTAATCAACGGCTCCTAGGT 58.536 47.619 9.08 0.00 0.00 3.08
1754 2025 3.536956 TTGTAATCAACGGCTCCTAGG 57.463 47.619 0.82 0.82 0.00 3.02
1757 2028 3.016736 CCAATTGTAATCAACGGCTCCT 58.983 45.455 4.43 0.00 36.33 3.69
1758 2029 2.752903 ACCAATTGTAATCAACGGCTCC 59.247 45.455 4.43 0.00 36.33 4.70
1759 2030 3.427503 CCACCAATTGTAATCAACGGCTC 60.428 47.826 4.43 0.00 36.33 4.70
1760 2031 2.491693 CCACCAATTGTAATCAACGGCT 59.508 45.455 4.43 0.00 36.33 5.52
1761 2032 2.874849 CCACCAATTGTAATCAACGGC 58.125 47.619 4.43 0.00 36.33 5.68
1762 2033 2.491693 AGCCACCAATTGTAATCAACGG 59.508 45.455 4.43 0.00 36.33 4.44
1763 2034 3.427503 GGAGCCACCAATTGTAATCAACG 60.428 47.826 4.43 0.00 36.10 4.10
1764 2035 3.763897 AGGAGCCACCAATTGTAATCAAC 59.236 43.478 4.43 0.00 42.04 3.18
1766 2037 3.010027 TCAGGAGCCACCAATTGTAATCA 59.990 43.478 4.43 0.00 42.04 2.57
1767 2038 3.620488 TCAGGAGCCACCAATTGTAATC 58.380 45.455 4.43 0.00 42.04 1.75
1768 2039 3.737559 TCAGGAGCCACCAATTGTAAT 57.262 42.857 4.43 0.00 42.04 1.89
1769 2040 3.517296 TTCAGGAGCCACCAATTGTAA 57.483 42.857 4.43 0.00 42.04 2.41
1770 2041 3.737559 ATTCAGGAGCCACCAATTGTA 57.262 42.857 4.43 0.00 42.04 2.41
1771 2042 2.610438 ATTCAGGAGCCACCAATTGT 57.390 45.000 4.43 0.00 42.04 2.71
1775 2138 3.135348 CAGAGATATTCAGGAGCCACCAA 59.865 47.826 0.47 0.00 42.04 3.67
1782 2145 3.555377 CCAGCAGCAGAGATATTCAGGAG 60.555 52.174 0.00 0.00 0.00 3.69
1793 2156 4.325119 AGCATTATATTCCAGCAGCAGAG 58.675 43.478 0.00 0.00 0.00 3.35
1798 2161 5.411977 CAGAGGAAGCATTATATTCCAGCAG 59.588 44.000 6.73 0.00 46.21 4.24
1840 2203 3.896888 AGAATCCATGGCAGTGTCAAAAA 59.103 39.130 6.96 0.00 0.00 1.94
1841 2204 3.499338 AGAATCCATGGCAGTGTCAAAA 58.501 40.909 6.96 0.00 0.00 2.44
1842 2205 3.159213 AGAATCCATGGCAGTGTCAAA 57.841 42.857 6.96 0.00 0.00 2.69
1843 2206 2.885135 AGAATCCATGGCAGTGTCAA 57.115 45.000 6.96 0.00 0.00 3.18
1844 2207 3.998913 TTAGAATCCATGGCAGTGTCA 57.001 42.857 6.96 0.00 0.00 3.58
1845 2208 5.050091 CGTATTTAGAATCCATGGCAGTGTC 60.050 44.000 6.96 0.00 0.00 3.67
1846 2209 4.816385 CGTATTTAGAATCCATGGCAGTGT 59.184 41.667 6.96 0.00 0.00 3.55
1847 2210 4.816385 ACGTATTTAGAATCCATGGCAGTG 59.184 41.667 6.96 0.00 0.00 3.66
1848 2211 5.036117 ACGTATTTAGAATCCATGGCAGT 57.964 39.130 6.96 0.00 0.00 4.40
1849 2212 5.300752 AGACGTATTTAGAATCCATGGCAG 58.699 41.667 6.96 0.00 0.00 4.85
1850 2213 5.290493 AGACGTATTTAGAATCCATGGCA 57.710 39.130 6.96 0.00 0.00 4.92
1851 2214 7.907214 ATAAGACGTATTTAGAATCCATGGC 57.093 36.000 6.96 0.00 0.00 4.40
1865 2228 9.310716 GCCTCTGTAACTTTTTATAAGACGTAT 57.689 33.333 0.00 0.00 0.00 3.06
1866 2229 8.526147 AGCCTCTGTAACTTTTTATAAGACGTA 58.474 33.333 0.00 0.00 0.00 3.57
1867 2230 7.331193 CAGCCTCTGTAACTTTTTATAAGACGT 59.669 37.037 0.00 0.00 0.00 4.34
1868 2231 7.544566 TCAGCCTCTGTAACTTTTTATAAGACG 59.455 37.037 0.00 0.00 32.61 4.18
1869 2232 8.773404 TCAGCCTCTGTAACTTTTTATAAGAC 57.227 34.615 0.00 0.00 32.61 3.01
1870 2233 8.812972 TCTCAGCCTCTGTAACTTTTTATAAGA 58.187 33.333 0.00 0.00 32.61 2.10
1871 2234 9.092876 CTCTCAGCCTCTGTAACTTTTTATAAG 57.907 37.037 0.00 0.00 32.61 1.73
1872 2235 7.549488 GCTCTCAGCCTCTGTAACTTTTTATAA 59.451 37.037 0.00 0.00 34.48 0.98
1873 2236 7.042335 GCTCTCAGCCTCTGTAACTTTTTATA 58.958 38.462 0.00 0.00 34.48 0.98
1874 2237 5.877564 GCTCTCAGCCTCTGTAACTTTTTAT 59.122 40.000 0.00 0.00 34.48 1.40
1875 2238 5.238583 GCTCTCAGCCTCTGTAACTTTTTA 58.761 41.667 0.00 0.00 34.48 1.52
1876 2239 4.068599 GCTCTCAGCCTCTGTAACTTTTT 58.931 43.478 0.00 0.00 34.48 1.94
1877 2240 3.669536 GCTCTCAGCCTCTGTAACTTTT 58.330 45.455 0.00 0.00 34.48 2.27
1878 2241 3.326836 GCTCTCAGCCTCTGTAACTTT 57.673 47.619 0.00 0.00 34.48 2.66
1892 2255 1.327303 AAAACCGCATTTGGCTCTCA 58.673 45.000 0.00 0.00 41.67 3.27
1894 2257 4.329462 TTTAAAAACCGCATTTGGCTCT 57.671 36.364 0.00 0.00 41.67 4.09
1899 2262 7.008628 TGCAAAACAATTTAAAAACCGCATTTG 59.991 29.630 0.00 0.42 0.00 2.32
1905 2268 8.543774 TGATAGTGCAAAACAATTTAAAAACCG 58.456 29.630 0.00 0.00 0.00 4.44
1913 2276 9.463443 GTTAGACTTGATAGTGCAAAACAATTT 57.537 29.630 0.00 0.00 33.84 1.82
1914 2277 8.629158 TGTTAGACTTGATAGTGCAAAACAATT 58.371 29.630 0.00 0.00 33.84 2.32
1932 2295 6.039717 AGCATGACACATTTTGTTGTTAGACT 59.960 34.615 0.00 0.00 39.17 3.24
1955 2318 2.138656 CTGCCTTGGTGAACTGCAGC 62.139 60.000 15.27 0.00 42.40 5.25
1956 2319 1.521450 CCTGCCTTGGTGAACTGCAG 61.521 60.000 13.48 13.48 46.82 4.41
1962 2325 4.721776 ACTAGAATATCCTGCCTTGGTGAA 59.278 41.667 0.00 0.00 0.00 3.18
1964 2327 4.141620 ACACTAGAATATCCTGCCTTGGTG 60.142 45.833 0.00 0.00 0.00 4.17
1971 2334 7.291411 TCTTCCTAACACTAGAATATCCTGC 57.709 40.000 0.00 0.00 0.00 4.85
2004 2367 7.820386 TGCCGACTCTGTTATTTCAAATAACTA 59.180 33.333 26.21 16.69 35.95 2.24
2005 2368 6.653320 TGCCGACTCTGTTATTTCAAATAACT 59.347 34.615 26.21 11.83 35.95 2.24
2011 2374 4.265904 TCTGCCGACTCTGTTATTTCAA 57.734 40.909 0.00 0.00 0.00 2.69
2014 2377 4.471904 TCATCTGCCGACTCTGTTATTT 57.528 40.909 0.00 0.00 0.00 1.40
2020 2487 3.686241 TCAAAAATCATCTGCCGACTCTG 59.314 43.478 0.00 0.00 0.00 3.35
2027 2494 4.204978 CGCGTAAATCAAAAATCATCTGCC 59.795 41.667 0.00 0.00 0.00 4.85
2031 2498 7.898725 AAGATCGCGTAAATCAAAAATCATC 57.101 32.000 5.77 0.00 0.00 2.92
2032 2499 8.687824 AAAAGATCGCGTAAATCAAAAATCAT 57.312 26.923 5.77 0.00 0.00 2.45
2040 2507 7.428183 GCAAAGAATAAAAGATCGCGTAAATCA 59.572 33.333 5.77 0.00 0.00 2.57
2045 2512 5.220586 CCTGCAAAGAATAAAAGATCGCGTA 60.221 40.000 5.77 0.00 0.00 4.42
2086 2553 0.032540 GCCAAGTGACAAGCCTTTGG 59.967 55.000 0.00 0.00 38.66 3.28
2106 2573 0.951040 GAACCCAGCGAGACAACAGG 60.951 60.000 0.00 0.00 0.00 4.00
2112 2579 0.108281 GGTAAGGAACCCAGCGAGAC 60.108 60.000 0.00 0.00 43.16 3.36
2141 2608 2.492484 GAGGTAGTACCATATGCCTCCG 59.508 54.545 21.49 0.00 41.95 4.63
2185 2652 5.300752 AGATCTATTTCATACCAACTGGCG 58.699 41.667 0.00 0.00 39.32 5.69
2223 2709 0.386838 GGTTCATGGCTAGGCAATGC 59.613 55.000 24.12 13.05 39.62 3.56
2224 2710 2.062971 AGGTTCATGGCTAGGCAATG 57.937 50.000 24.12 19.80 41.02 2.82
2225 2711 2.381911 CAAGGTTCATGGCTAGGCAAT 58.618 47.619 24.12 9.12 0.00 3.56
2228 2714 1.387295 GGCAAGGTTCATGGCTAGGC 61.387 60.000 9.85 9.85 39.99 3.93
2241 2727 1.898574 AGTCGCAAACCAGGCAAGG 60.899 57.895 0.00 0.00 0.00 3.61
2275 2764 3.507009 CGGGTCCTCCTCGACGAC 61.507 72.222 0.00 0.00 33.30 4.34
2276 2765 4.790962 CCGGGTCCTCCTCGACGA 62.791 72.222 0.00 0.00 33.30 4.20
2356 2845 2.100603 CGCCTTCTCCTCGTCGTC 59.899 66.667 0.00 0.00 0.00 4.20
2430 2919 4.778143 GCTTCACCCGGCCGTGAT 62.778 66.667 26.12 5.70 42.20 3.06
2518 3007 4.174009 CACTCGTCGAACATAGATGGTTT 58.826 43.478 0.00 0.00 0.00 3.27
2700 3189 9.122779 ACCGATGGAAGCTAATATAGATACTAC 57.877 37.037 0.00 0.00 0.00 2.73
2736 3225 8.397957 ACCAATCACAGGGGCATTTATATATTA 58.602 33.333 0.00 0.00 0.00 0.98
2935 3911 7.066645 GCTTTTATATTTGTTTACGGAGGGAGT 59.933 37.037 0.00 0.00 0.00 3.85
2936 3912 7.415229 GCTTTTATATTTGTTTACGGAGGGAG 58.585 38.462 0.00 0.00 0.00 4.30
2937 3913 6.037391 CGCTTTTATATTTGTTTACGGAGGGA 59.963 38.462 0.00 0.00 0.00 4.20
2938 3914 6.183360 ACGCTTTTATATTTGTTTACGGAGGG 60.183 38.462 0.00 0.00 0.00 4.30
2939 3915 6.778108 ACGCTTTTATATTTGTTTACGGAGG 58.222 36.000 0.00 0.00 0.00 4.30
2940 3916 8.663771 AAACGCTTTTATATTTGTTTACGGAG 57.336 30.769 0.00 0.00 0.00 4.63
2941 3917 9.757859 CTAAACGCTTTTATATTTGTTTACGGA 57.242 29.630 0.00 0.00 32.41 4.69
2942 3918 9.757859 TCTAAACGCTTTTATATTTGTTTACGG 57.242 29.630 0.00 0.00 32.41 4.02
2955 3931 9.918630 ACTACTTTAGTGATCTAAACGCTTTTA 57.081 29.630 0.00 0.00 40.05 1.52
2956 3932 8.828688 ACTACTTTAGTGATCTAAACGCTTTT 57.171 30.769 0.00 0.00 40.05 2.27
2957 3933 9.918630 TTACTACTTTAGTGATCTAAACGCTTT 57.081 29.630 0.00 0.00 40.05 3.51
2959 3935 9.733219 GATTACTACTTTAGTGATCTAAACGCT 57.267 33.333 9.68 0.00 44.10 5.07
2998 3974 9.710818 ACATACTACTCCCTCTGTAAAGAAATA 57.289 33.333 0.00 0.00 0.00 1.40
2999 3975 8.611051 ACATACTACTCCCTCTGTAAAGAAAT 57.389 34.615 0.00 0.00 0.00 2.17
3000 3976 8.431910 AACATACTACTCCCTCTGTAAAGAAA 57.568 34.615 0.00 0.00 0.00 2.52
3001 3977 8.311836 CAAACATACTACTCCCTCTGTAAAGAA 58.688 37.037 0.00 0.00 0.00 2.52
3002 3978 7.672660 TCAAACATACTACTCCCTCTGTAAAGA 59.327 37.037 0.00 0.00 0.00 2.52
3003 3979 7.837863 TCAAACATACTACTCCCTCTGTAAAG 58.162 38.462 0.00 0.00 0.00 1.85
3004 3980 7.578955 GCTCAAACATACTACTCCCTCTGTAAA 60.579 40.741 0.00 0.00 0.00 2.01
3005 3981 6.127423 GCTCAAACATACTACTCCCTCTGTAA 60.127 42.308 0.00 0.00 0.00 2.41
3006 3982 5.360144 GCTCAAACATACTACTCCCTCTGTA 59.640 44.000 0.00 0.00 0.00 2.74
3007 3983 4.160626 GCTCAAACATACTACTCCCTCTGT 59.839 45.833 0.00 0.00 0.00 3.41
3008 3984 4.160439 TGCTCAAACATACTACTCCCTCTG 59.840 45.833 0.00 0.00 0.00 3.35
3009 3985 4.353777 TGCTCAAACATACTACTCCCTCT 58.646 43.478 0.00 0.00 0.00 3.69
3010 3986 4.737855 TGCTCAAACATACTACTCCCTC 57.262 45.455 0.00 0.00 0.00 4.30
3011 3987 5.499004 TTTGCTCAAACATACTACTCCCT 57.501 39.130 0.00 0.00 0.00 4.20
3012 3988 6.017852 GCTATTTGCTCAAACATACTACTCCC 60.018 42.308 0.00 0.00 38.95 4.30
3013 3989 6.949449 GCTATTTGCTCAAACATACTACTCC 58.051 40.000 0.00 0.00 38.95 3.85
3222 7681 2.698797 GGGGTGCAGCTATCAGTAGTTA 59.301 50.000 16.65 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.