Multiple sequence alignment - TraesCS3D01G407800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G407800 chr3D 100.000 4851 0 0 1 4851 520943870 520948720 0.000000e+00 8959.0
1 TraesCS3D01G407800 chr3B 92.940 3258 143 27 1 3221 686728854 686732061 0.000000e+00 4662.0
2 TraesCS3D01G407800 chr3B 92.461 703 32 16 3263 3952 686732057 686732751 0.000000e+00 985.0
3 TraesCS3D01G407800 chr3B 87.749 351 18 11 4083 4418 686733197 686733537 2.120000e-103 387.0
4 TraesCS3D01G407800 chr3A 93.282 2620 91 26 643 3213 656427273 656429856 0.000000e+00 3784.0
5 TraesCS3D01G407800 chr3A 93.645 598 32 3 3264 3861 656429861 656430452 0.000000e+00 889.0
6 TraesCS3D01G407800 chr3A 87.379 309 10 14 4117 4396 656431006 656431314 1.300000e-85 327.0
7 TraesCS3D01G407800 chr3A 89.524 105 9 1 3851 3955 656430481 656430583 1.100000e-26 132.0
8 TraesCS3D01G407800 chr2B 83.059 608 82 12 2201 2795 728193842 728193243 2.570000e-147 532.0
9 TraesCS3D01G407800 chr2B 82.465 576 78 12 2233 2795 26149206 26148641 2.630000e-132 483.0
10 TraesCS3D01G407800 chr2B 94.737 38 2 0 3215 3252 234339501 234339464 5.240000e-05 60.2
11 TraesCS3D01G407800 chr1D 90.041 241 22 2 2557 2796 453045890 453046129 1.310000e-80 311.0
12 TraesCS3D01G407800 chr1D 94.444 36 2 0 3216 3251 445610602 445610637 6.780000e-04 56.5
13 TraesCS3D01G407800 chr1D 94.444 36 2 0 3216 3251 493932392 493932357 6.780000e-04 56.5
14 TraesCS3D01G407800 chr7A 89.212 241 24 2 2557 2796 19040141 19040380 2.840000e-77 300.0
15 TraesCS3D01G407800 chr2D 89.256 242 22 2 2557 2795 63211111 63210871 2.840000e-77 300.0
16 TraesCS3D01G407800 chr2D 92.105 38 3 0 3215 3252 177449847 177449810 2.000000e-03 54.7
17 TraesCS3D01G407800 chrUn 88.333 240 24 2 2556 2795 90403473 90403238 7.950000e-73 285.0
18 TraesCS3D01G407800 chrUn 87.917 240 25 2 2556 2795 90484035 90483800 3.700000e-71 279.0
19 TraesCS3D01G407800 chr5D 88.542 96 11 0 4414 4509 410291372 410291467 3.070000e-22 117.0
20 TraesCS3D01G407800 chr6B 77.640 161 35 1 4497 4656 680131505 680131345 4.000000e-16 97.1
21 TraesCS3D01G407800 chr4A 94.595 37 2 0 3215 3251 739818508 739818544 1.890000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G407800 chr3D 520943870 520948720 4850 False 8959.000000 8959 100.0000 1 4851 1 chr3D.!!$F1 4850
1 TraesCS3D01G407800 chr3B 686728854 686733537 4683 False 2011.333333 4662 91.0500 1 4418 3 chr3B.!!$F1 4417
2 TraesCS3D01G407800 chr3A 656427273 656431314 4041 False 1283.000000 3784 90.9575 643 4396 4 chr3A.!!$F1 3753
3 TraesCS3D01G407800 chr2B 728193243 728193842 599 True 532.000000 532 83.0590 2201 2795 1 chr2B.!!$R3 594
4 TraesCS3D01G407800 chr2B 26148641 26149206 565 True 483.000000 483 82.4650 2233 2795 1 chr2B.!!$R1 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
595 598 0.251033 ATCGATGTGGATGGGGCATG 60.251 55.000 0.00 0.00 0.00 4.06 F
1183 1208 0.034616 GGTGAGCTCTGCAGTTGTCT 59.965 55.000 16.19 6.55 0.00 3.41 F
2073 2148 0.368567 GTTGCACACGTTGTTTTGGC 59.631 50.000 0.00 0.00 0.00 4.52 F
3141 3232 1.446272 CGAGGGACGCTCTCCAAAC 60.446 63.158 16.58 0.00 41.63 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2576 2666 1.410517 TCAACCTGCTCGATCATCTCC 59.589 52.381 0.00 0.0 0.00 3.71 R
2902 2992 5.555966 TGCTCTACAACAAATGGTATGACA 58.444 37.500 0.00 0.0 0.00 3.58 R
3504 3607 0.034089 ACTGGGGATTAACCTGCAGC 60.034 55.000 8.66 0.0 38.98 5.25 R
4742 5369 0.035317 TGCGTCCATCTGCTTGACTT 59.965 50.000 0.00 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 7.603024 CGAGTTCCTTTTATAGTTTCCTTCTGT 59.397 37.037 0.00 0.00 0.00 3.41
51 52 9.096823 TCCTTTTATAGTTTCCTTCTGTAGACA 57.903 33.333 0.00 0.00 0.00 3.41
59 60 4.338795 TCCTTCTGTAGACAGGGAATCT 57.661 45.455 9.73 0.00 43.91 2.40
86 87 6.779115 ACAAAAGCCGAAAATAATTTGTCC 57.221 33.333 0.00 0.00 36.56 4.02
88 89 7.662897 ACAAAAGCCGAAAATAATTTGTCCTA 58.337 30.769 0.00 0.00 36.56 2.94
92 93 9.965824 AAAGCCGAAAATAATTTGTCCTATATG 57.034 29.630 0.00 0.00 0.00 1.78
99 100 8.547967 AAATAATTTGTCCTATATGTCGCGAT 57.452 30.769 14.06 0.00 0.00 4.58
116 117 2.031560 GCGATGAATGTGGCGTTTATCA 59.968 45.455 0.00 0.00 29.51 2.15
119 120 4.539870 GATGAATGTGGCGTTTATCATGG 58.460 43.478 0.00 0.00 29.51 3.66
142 143 6.702723 TGGATATCCGGTAAGAATAAACAACG 59.297 38.462 17.04 0.00 39.43 4.10
164 165 5.105310 ACGGAATGTCACATCTAGCTACTTT 60.105 40.000 0.00 0.00 0.00 2.66
187 188 4.518970 TGAAAGTTCTTGCCCATAGTGAAC 59.481 41.667 0.00 0.00 37.76 3.18
189 190 2.038557 AGTTCTTGCCCATAGTGAACGT 59.961 45.455 0.00 0.00 41.05 3.99
191 192 2.422597 TCTTGCCCATAGTGAACGTTG 58.577 47.619 5.00 0.00 0.00 4.10
213 214 3.865745 GTCATGAACACCCTATCTTCACG 59.134 47.826 0.00 0.00 0.00 4.35
219 220 6.469410 TGAACACCCTATCTTCACGTAAATT 58.531 36.000 0.00 0.00 0.00 1.82
220 221 6.370442 TGAACACCCTATCTTCACGTAAATTG 59.630 38.462 0.00 0.00 0.00 2.32
223 224 3.564225 CCCTATCTTCACGTAAATTGGGC 59.436 47.826 0.00 0.00 29.52 5.36
255 256 3.636679 TGGTTTTCCACACCAATGAAGA 58.363 40.909 0.00 0.00 46.22 2.87
256 257 4.026744 TGGTTTTCCACACCAATGAAGAA 58.973 39.130 0.00 0.00 46.22 2.52
257 258 4.142049 TGGTTTTCCACACCAATGAAGAAC 60.142 41.667 0.00 0.00 46.22 3.01
294 295 1.475403 ACCCCATAGAGTGTGAGTCG 58.525 55.000 0.00 0.00 0.00 4.18
296 297 1.685180 CCCCATAGAGTGTGAGTCGGA 60.685 57.143 0.00 0.00 0.00 4.55
298 299 2.159226 CCCATAGAGTGTGAGTCGGAAC 60.159 54.545 0.00 0.00 0.00 3.62
341 342 1.683943 ATTTGGCATGGTGATCTCCG 58.316 50.000 9.20 0.00 0.00 4.63
353 354 1.071228 TGATCTCCGAGCATGAATGGG 59.929 52.381 0.00 0.00 0.00 4.00
375 376 4.019174 GGAGAGATGAATTTTGAAGCCCA 58.981 43.478 0.00 0.00 0.00 5.36
399 400 2.673775 TTGACAAAAGCATCTCCCCA 57.326 45.000 0.00 0.00 0.00 4.96
402 403 0.609131 ACAAAAGCATCTCCCCACCG 60.609 55.000 0.00 0.00 0.00 4.94
407 408 2.808315 CATCTCCCCACCGAGACG 59.192 66.667 0.00 0.00 41.60 4.18
428 429 3.527533 GTGGAGCGTCATGTGGTTTATA 58.472 45.455 0.00 0.00 0.00 0.98
524 527 3.126453 AGATAAATCAAGTGGGCCCTCT 58.874 45.455 25.70 23.24 0.00 3.69
550 553 5.940470 AGGAAAAGATATGCGAAGTGAGTTT 59.060 36.000 0.00 0.00 0.00 2.66
551 554 6.024049 GGAAAAGATATGCGAAGTGAGTTTG 58.976 40.000 0.00 0.00 0.00 2.93
552 555 4.606457 AAGATATGCGAAGTGAGTTTGC 57.394 40.909 5.28 5.28 44.98 3.68
557 560 2.954611 GAAGTGAGTTTGCGCCCC 59.045 61.111 4.18 0.00 0.00 5.80
559 562 3.469863 AAGTGAGTTTGCGCCCCGA 62.470 57.895 4.18 0.00 0.00 5.14
579 582 3.977579 CGACATGAACATGGTCTAGATCG 59.022 47.826 12.94 11.81 42.91 3.69
595 598 0.251033 ATCGATGTGGATGGGGCATG 60.251 55.000 0.00 0.00 0.00 4.06
640 645 4.934602 GGTGCTAATGCTATTGGAGAGATC 59.065 45.833 0.00 0.00 40.48 2.75
698 703 6.147328 GTGAGTTAGTGATGACCTAACAAACC 59.853 42.308 11.58 1.32 44.28 3.27
855 865 5.012328 AGTTATAGAGCCTGAAAAGTCGG 57.988 43.478 0.00 0.00 0.00 4.79
856 866 4.466726 AGTTATAGAGCCTGAAAAGTCGGT 59.533 41.667 0.00 0.00 0.00 4.69
866 876 4.201851 CCTGAAAAGTCGGTGCATAATCTG 60.202 45.833 0.00 0.00 0.00 2.90
869 879 1.496060 AGTCGGTGCATAATCTGGGA 58.504 50.000 0.00 0.00 0.00 4.37
880 890 2.024176 AATCTGGGACGTCCATTTCG 57.976 50.000 34.40 17.24 46.01 3.46
1095 1120 1.135257 AGTCCGAATTCTGCTGTCTCG 60.135 52.381 3.52 0.00 0.00 4.04
1107 1132 1.801025 GCTGTCTCGCTTCCTAGCTTC 60.801 57.143 0.00 0.00 45.51 3.86
1178 1203 2.919856 ACCGGTGAGCTCTGCAGT 60.920 61.111 16.19 4.78 0.00 4.40
1183 1208 0.034616 GGTGAGCTCTGCAGTTGTCT 59.965 55.000 16.19 6.55 0.00 3.41
1344 1369 9.243637 GTAGTCTCAAGCTGAAGATTTAGTATG 57.756 37.037 1.95 0.00 0.00 2.39
1409 1442 3.220940 TGATGTTTCTGGTCAATGTGCA 58.779 40.909 0.00 0.00 0.00 4.57
1464 1511 6.092670 TCAGATTAGAAATCGTCTGCCTTTTG 59.907 38.462 0.00 0.00 38.32 2.44
1498 1545 4.260139 TCATCCACGTGCTACTGTTAAA 57.740 40.909 10.91 0.00 0.00 1.52
1557 1604 2.893489 AGGGGAAAGATGCAGTCAAAAC 59.107 45.455 0.00 0.00 0.00 2.43
1558 1605 2.893489 GGGGAAAGATGCAGTCAAAACT 59.107 45.455 0.00 0.00 35.60 2.66
1559 1606 3.057245 GGGGAAAGATGCAGTCAAAACTC 60.057 47.826 0.00 0.00 31.71 3.01
1560 1607 3.569701 GGGAAAGATGCAGTCAAAACTCA 59.430 43.478 0.00 0.00 31.71 3.41
1561 1608 4.037923 GGGAAAGATGCAGTCAAAACTCAA 59.962 41.667 0.00 0.00 31.71 3.02
1562 1609 5.451798 GGGAAAGATGCAGTCAAAACTCAAA 60.452 40.000 0.00 0.00 31.71 2.69
1563 1610 6.042143 GGAAAGATGCAGTCAAAACTCAAAA 58.958 36.000 0.00 0.00 31.71 2.44
1593 1640 1.407656 TTGCCCTCTTCGGTCACAGT 61.408 55.000 0.00 0.00 0.00 3.55
1745 1792 4.041567 TCCCAACACTGTATGTCACTTCAT 59.958 41.667 0.00 0.00 42.31 2.57
1762 1809 5.873712 CACTTCATGCTCAGATTAGACTGTT 59.126 40.000 0.00 0.00 38.79 3.16
1829 1904 6.491383 TGGTACTTAGTGTAGATCCTCACTT 58.509 40.000 20.30 9.52 43.39 3.16
1881 1956 0.459759 GGTAGGTGGAAGTAGCACGC 60.460 60.000 0.00 0.00 0.00 5.34
2073 2148 0.368567 GTTGCACACGTTGTTTTGGC 59.631 50.000 0.00 0.00 0.00 4.52
2082 2157 3.245754 CACGTTGTTTTGGCGTACTTAGA 59.754 43.478 0.00 0.00 37.07 2.10
2179 2254 3.698029 TGTGCTTCTGTTTTTGAGAGC 57.302 42.857 0.00 0.00 0.00 4.09
2184 2259 4.398988 TGCTTCTGTTTTTGAGAGCTTCAA 59.601 37.500 7.09 7.09 43.92 2.69
2337 2412 4.269183 AGGACATCGATTGGCATGTTTTA 58.731 39.130 0.00 0.00 33.62 1.52
2902 2992 8.774586 GGAGTAAGCGATTATTTTGACATATGT 58.225 33.333 8.43 8.43 0.00 2.29
2941 3031 1.869767 GAGCAGACTGTTGACTGTTGG 59.130 52.381 3.99 0.00 38.05 3.77
3141 3232 1.446272 CGAGGGACGCTCTCCAAAC 60.446 63.158 16.58 0.00 41.63 2.93
3146 3237 1.480954 GGGACGCTCTCCAAACTATCA 59.519 52.381 0.14 0.00 41.63 2.15
3152 3243 3.369147 CGCTCTCCAAACTATCACAACTG 59.631 47.826 0.00 0.00 0.00 3.16
3223 3314 4.731720 GAAGTAAGTCTTCACGTACTCCC 58.268 47.826 1.92 0.00 44.30 4.30
3224 3315 4.031636 AGTAAGTCTTCACGTACTCCCT 57.968 45.455 0.00 0.00 42.23 4.20
3225 3316 4.009002 AGTAAGTCTTCACGTACTCCCTC 58.991 47.826 0.00 0.00 42.23 4.30
3226 3317 2.883122 AGTCTTCACGTACTCCCTCT 57.117 50.000 0.00 0.00 0.00 3.69
3227 3318 2.438411 AGTCTTCACGTACTCCCTCTG 58.562 52.381 0.00 0.00 0.00 3.35
3228 3319 2.161030 GTCTTCACGTACTCCCTCTGT 58.839 52.381 0.00 0.00 0.00 3.41
3229 3320 3.008813 AGTCTTCACGTACTCCCTCTGTA 59.991 47.826 0.00 0.00 0.00 2.74
3230 3321 3.946558 GTCTTCACGTACTCCCTCTGTAT 59.053 47.826 0.00 0.00 0.00 2.29
3231 3322 4.035441 GTCTTCACGTACTCCCTCTGTATC 59.965 50.000 0.00 0.00 0.00 2.24
3232 3323 3.639672 TCACGTACTCCCTCTGTATCA 57.360 47.619 0.00 0.00 0.00 2.15
3233 3324 3.959293 TCACGTACTCCCTCTGTATCAA 58.041 45.455 0.00 0.00 0.00 2.57
3234 3325 4.338012 TCACGTACTCCCTCTGTATCAAA 58.662 43.478 0.00 0.00 0.00 2.69
3235 3326 4.768448 TCACGTACTCCCTCTGTATCAAAA 59.232 41.667 0.00 0.00 0.00 2.44
3236 3327 5.421056 TCACGTACTCCCTCTGTATCAAAAT 59.579 40.000 0.00 0.00 0.00 1.82
3237 3328 6.604396 TCACGTACTCCCTCTGTATCAAAATA 59.396 38.462 0.00 0.00 0.00 1.40
3238 3329 7.287005 TCACGTACTCCCTCTGTATCAAAATAT 59.713 37.037 0.00 0.00 0.00 1.28
3239 3330 8.573885 CACGTACTCCCTCTGTATCAAAATATA 58.426 37.037 0.00 0.00 0.00 0.86
3240 3331 9.139734 ACGTACTCCCTCTGTATCAAAATATAA 57.860 33.333 0.00 0.00 0.00 0.98
3241 3332 9.627395 CGTACTCCCTCTGTATCAAAATATAAG 57.373 37.037 0.00 0.00 0.00 1.73
3396 3489 9.856488 CTGTTCTACATTTTTACAGTAGCTCTA 57.144 33.333 0.00 0.00 36.16 2.43
3484 3585 2.224314 GTGAAGAAAGTGCCTGCAGTAC 59.776 50.000 13.81 11.40 0.00 2.73
3485 3586 2.158827 TGAAGAAAGTGCCTGCAGTACA 60.159 45.455 13.81 7.82 32.67 2.90
3504 3607 4.836125 ACAACTAACAGAAGCATGGTTG 57.164 40.909 16.18 9.27 38.60 3.77
3528 3631 3.785887 TGCAGGTTAATCCCCAGTTCTAT 59.214 43.478 0.00 0.00 36.75 1.98
3867 4010 4.790766 GCAGTGAACATGTTTCTTCAGTGG 60.791 45.833 24.42 12.86 43.60 4.00
3878 4021 5.763204 TGTTTCTTCAGTGGAATCTGTAACC 59.237 40.000 0.00 0.00 36.85 2.85
3977 4567 3.090210 TGGGCAATCCATATATGCTGG 57.910 47.619 7.24 0.00 41.46 4.85
3984 4574 1.002257 CATATATGCTGGCCGGCCA 60.002 57.895 44.03 44.03 45.02 5.36
3998 4588 0.949105 CGGCCAAGCGTAGAACAGTT 60.949 55.000 2.24 0.00 0.00 3.16
3999 4589 1.235724 GGCCAAGCGTAGAACAGTTT 58.764 50.000 0.00 0.00 0.00 2.66
4011 4601 3.134458 AGAACAGTTTGGAGAAGCTTCG 58.866 45.455 20.43 6.50 0.00 3.79
4012 4602 1.230324 ACAGTTTGGAGAAGCTTCGC 58.770 50.000 20.63 20.63 0.00 4.70
4043 4633 3.160872 GGCTACACCTGCTCTTTCC 57.839 57.895 0.00 0.00 34.51 3.13
4044 4634 0.324943 GGCTACACCTGCTCTTTCCA 59.675 55.000 0.00 0.00 34.51 3.53
4045 4635 1.443802 GCTACACCTGCTCTTTCCAC 58.556 55.000 0.00 0.00 0.00 4.02
4047 4637 1.625818 CTACACCTGCTCTTTCCACCT 59.374 52.381 0.00 0.00 0.00 4.00
4048 4638 0.846693 ACACCTGCTCTTTCCACCTT 59.153 50.000 0.00 0.00 0.00 3.50
4049 4639 1.202818 ACACCTGCTCTTTCCACCTTC 60.203 52.381 0.00 0.00 0.00 3.46
4050 4640 0.402121 ACCTGCTCTTTCCACCTTCC 59.598 55.000 0.00 0.00 0.00 3.46
4053 4643 0.772124 TGCTCTTTCCACCTTCCCCT 60.772 55.000 0.00 0.00 0.00 4.79
4054 4644 0.322906 GCTCTTTCCACCTTCCCCTG 60.323 60.000 0.00 0.00 0.00 4.45
4055 4645 0.329596 CTCTTTCCACCTTCCCCTGG 59.670 60.000 0.00 0.00 0.00 4.45
4056 4646 0.402861 TCTTTCCACCTTCCCCTGGT 60.403 55.000 0.00 0.00 38.53 4.00
4057 4647 0.482887 CTTTCCACCTTCCCCTGGTT 59.517 55.000 0.00 0.00 35.28 3.67
4058 4648 0.938192 TTTCCACCTTCCCCTGGTTT 59.062 50.000 0.00 0.00 35.28 3.27
4059 4649 0.481128 TTCCACCTTCCCCTGGTTTC 59.519 55.000 0.00 0.00 35.28 2.78
4060 4650 1.076727 CCACCTTCCCCTGGTTTCC 59.923 63.158 0.00 0.00 35.28 3.13
4061 4651 1.303317 CACCTTCCCCTGGTTTCCG 60.303 63.158 0.00 0.00 35.28 4.30
4062 4652 1.462627 ACCTTCCCCTGGTTTCCGA 60.463 57.895 0.00 0.00 33.34 4.55
4063 4653 1.063654 ACCTTCCCCTGGTTTCCGAA 61.064 55.000 0.00 0.00 33.34 4.30
4064 4654 0.111639 CCTTCCCCTGGTTTCCGAAA 59.888 55.000 0.00 0.00 0.00 3.46
4065 4655 1.244816 CTTCCCCTGGTTTCCGAAAC 58.755 55.000 14.58 14.58 40.65 2.78
4066 4656 0.551879 TTCCCCTGGTTTCCGAAACA 59.448 50.000 22.39 10.07 43.15 2.83
4068 4658 0.179001 CCCCTGGTTTCCGAAACAGT 60.179 55.000 22.39 0.00 46.92 3.55
4069 4659 1.235724 CCCTGGTTTCCGAAACAGTC 58.764 55.000 22.39 8.59 46.92 3.51
4070 4660 1.202770 CCCTGGTTTCCGAAACAGTCT 60.203 52.381 22.39 0.00 46.92 3.24
4071 4661 2.143925 CCTGGTTTCCGAAACAGTCTC 58.856 52.381 22.39 7.97 46.92 3.36
4072 4662 2.143925 CTGGTTTCCGAAACAGTCTCC 58.856 52.381 22.39 7.49 44.01 3.71
4073 4663 1.202722 TGGTTTCCGAAACAGTCTCCC 60.203 52.381 22.39 6.85 43.15 4.30
4074 4664 1.071857 GGTTTCCGAAACAGTCTCCCT 59.928 52.381 22.39 0.00 43.15 4.20
4076 4666 1.712056 TTCCGAAACAGTCTCCCTGA 58.288 50.000 0.00 0.00 44.49 3.86
4077 4667 1.938585 TCCGAAACAGTCTCCCTGAT 58.061 50.000 0.00 0.00 44.49 2.90
4078 4668 1.550524 TCCGAAACAGTCTCCCTGATG 59.449 52.381 0.00 0.00 44.49 3.07
4079 4669 1.406069 CCGAAACAGTCTCCCTGATGG 60.406 57.143 0.00 0.00 44.49 3.51
4126 4716 2.103042 GTGACAGACTGATGCCCGC 61.103 63.158 10.08 0.00 0.00 6.13
4128 4718 4.457496 ACAGACTGATGCCCGCGG 62.457 66.667 21.04 21.04 0.00 6.46
4155 4746 5.345202 ACGATCGATATATTTTCTCAACGGC 59.655 40.000 24.34 0.00 0.00 5.68
4392 5019 4.435425 CTGTAGCTACGAGTGAGAGTAGT 58.565 47.826 18.74 0.00 41.59 2.73
4418 5045 4.435436 CAGCTACTGCCGCGTGGA 62.435 66.667 21.76 2.83 40.80 4.02
4419 5046 3.691342 AGCTACTGCCGCGTGGAA 61.691 61.111 21.76 7.59 40.80 3.53
4420 5047 2.740826 GCTACTGCCGCGTGGAAA 60.741 61.111 21.76 4.74 37.49 3.13
4421 5048 2.106683 GCTACTGCCGCGTGGAAAT 61.107 57.895 21.76 0.00 37.49 2.17
4422 5049 1.715585 CTACTGCCGCGTGGAAATG 59.284 57.895 21.76 7.30 37.49 2.32
4423 5050 0.739462 CTACTGCCGCGTGGAAATGA 60.739 55.000 21.76 0.00 37.49 2.57
4424 5051 0.320858 TACTGCCGCGTGGAAATGAA 60.321 50.000 21.76 0.00 37.49 2.57
4425 5052 1.154225 CTGCCGCGTGGAAATGAAC 60.154 57.895 21.76 0.00 37.49 3.18
4426 5053 2.202298 GCCGCGTGGAAATGAACG 60.202 61.111 21.76 0.00 42.61 3.95
4427 5054 2.478746 CCGCGTGGAAATGAACGG 59.521 61.111 10.20 0.00 40.12 4.44
4428 5055 2.030401 CCGCGTGGAAATGAACGGA 61.030 57.895 10.20 0.00 43.19 4.69
4429 5056 1.570347 CCGCGTGGAAATGAACGGAA 61.570 55.000 10.20 0.00 43.19 4.30
4430 5057 0.446222 CGCGTGGAAATGAACGGAAT 59.554 50.000 0.00 0.00 40.12 3.01
4431 5058 1.135803 CGCGTGGAAATGAACGGAATT 60.136 47.619 0.00 0.00 40.12 2.17
4432 5059 2.250188 GCGTGGAAATGAACGGAATTG 58.750 47.619 0.00 0.00 40.12 2.32
4433 5060 2.862512 CGTGGAAATGAACGGAATTGG 58.137 47.619 0.00 0.00 36.17 3.16
4434 5061 2.606108 GTGGAAATGAACGGAATTGGC 58.394 47.619 0.00 0.00 0.00 4.52
4435 5062 1.548269 TGGAAATGAACGGAATTGGCC 59.452 47.619 0.00 0.00 0.00 5.36
4436 5063 1.134818 GGAAATGAACGGAATTGGCCC 60.135 52.381 0.00 0.00 0.00 5.80
4437 5064 1.824852 GAAATGAACGGAATTGGCCCT 59.175 47.619 0.00 0.00 0.00 5.19
4438 5065 1.937191 AATGAACGGAATTGGCCCTT 58.063 45.000 0.00 0.00 0.00 3.95
4439 5066 2.818751 ATGAACGGAATTGGCCCTTA 57.181 45.000 0.00 0.00 0.00 2.69
4440 5067 2.818751 TGAACGGAATTGGCCCTTAT 57.181 45.000 0.00 0.00 0.00 1.73
4441 5068 3.094484 TGAACGGAATTGGCCCTTATT 57.906 42.857 0.00 0.00 0.00 1.40
4442 5069 3.020984 TGAACGGAATTGGCCCTTATTC 58.979 45.455 0.00 7.04 0.00 1.75
4443 5070 2.818751 ACGGAATTGGCCCTTATTCA 57.181 45.000 18.50 0.00 33.43 2.57
4444 5071 3.094484 ACGGAATTGGCCCTTATTCAA 57.906 42.857 18.50 0.00 33.43 2.69
4445 5072 3.436243 ACGGAATTGGCCCTTATTCAAA 58.564 40.909 18.50 0.00 33.43 2.69
4446 5073 3.835395 ACGGAATTGGCCCTTATTCAAAA 59.165 39.130 18.50 0.00 33.43 2.44
4447 5074 4.180817 CGGAATTGGCCCTTATTCAAAAC 58.819 43.478 18.50 5.84 33.43 2.43
4448 5075 4.081697 CGGAATTGGCCCTTATTCAAAACT 60.082 41.667 18.50 0.00 33.43 2.66
4449 5076 5.568624 CGGAATTGGCCCTTATTCAAAACTT 60.569 40.000 18.50 0.00 33.43 2.66
4450 5077 5.874810 GGAATTGGCCCTTATTCAAAACTTC 59.125 40.000 18.50 0.94 33.43 3.01
4451 5078 6.432403 AATTGGCCCTTATTCAAAACTTCA 57.568 33.333 0.00 0.00 0.00 3.02
4452 5079 5.878406 TTGGCCCTTATTCAAAACTTCAA 57.122 34.783 0.00 0.00 0.00 2.69
4453 5080 5.208463 TGGCCCTTATTCAAAACTTCAAC 57.792 39.130 0.00 0.00 0.00 3.18
4454 5081 4.651503 TGGCCCTTATTCAAAACTTCAACA 59.348 37.500 0.00 0.00 0.00 3.33
4455 5082 5.306678 TGGCCCTTATTCAAAACTTCAACAT 59.693 36.000 0.00 0.00 0.00 2.71
4456 5083 5.639082 GGCCCTTATTCAAAACTTCAACATG 59.361 40.000 0.00 0.00 0.00 3.21
4457 5084 6.454795 GCCCTTATTCAAAACTTCAACATGA 58.545 36.000 0.00 0.00 0.00 3.07
4458 5085 6.928492 GCCCTTATTCAAAACTTCAACATGAA 59.072 34.615 0.00 0.00 34.79 2.57
4459 5086 7.440856 GCCCTTATTCAAAACTTCAACATGAAA 59.559 33.333 0.00 0.00 35.73 2.69
4460 5087 9.492973 CCCTTATTCAAAACTTCAACATGAAAT 57.507 29.630 0.00 0.00 35.73 2.17
4500 5127 8.620116 AATATTTCACAAAATTGACCCTTTGG 57.380 30.769 0.00 0.00 36.94 3.28
4501 5128 3.467374 TCACAAAATTGACCCTTTGGC 57.533 42.857 0.00 0.00 36.94 4.52
4502 5129 2.768527 TCACAAAATTGACCCTTTGGCA 59.231 40.909 0.00 0.00 36.94 4.92
4503 5130 3.390639 TCACAAAATTGACCCTTTGGCAT 59.609 39.130 0.00 0.00 36.94 4.40
4504 5131 3.499157 CACAAAATTGACCCTTTGGCATG 59.501 43.478 0.00 0.00 36.94 4.06
4505 5132 3.390639 ACAAAATTGACCCTTTGGCATGA 59.609 39.130 0.00 0.00 36.94 3.07
4506 5133 3.683365 AAATTGACCCTTTGGCATGAC 57.317 42.857 0.00 0.00 33.59 3.06
4507 5134 1.176527 ATTGACCCTTTGGCATGACG 58.823 50.000 0.00 0.00 33.59 4.35
4508 5135 1.523154 TTGACCCTTTGGCATGACGC 61.523 55.000 0.00 0.00 41.28 5.19
4517 5144 2.900273 GCATGACGCCCTAGTCCA 59.100 61.111 0.00 0.00 40.26 4.02
4518 5145 1.227380 GCATGACGCCCTAGTCCAG 60.227 63.158 0.00 0.00 40.26 3.86
4519 5146 1.443407 CATGACGCCCTAGTCCAGG 59.557 63.158 0.00 0.00 45.07 4.45
4526 5153 4.737346 CCTAGTCCAGGGAGCCAT 57.263 61.111 0.00 0.00 41.26 4.40
4527 5154 2.446512 CCTAGTCCAGGGAGCCATC 58.553 63.158 0.00 0.00 41.26 3.51
4528 5155 1.124477 CCTAGTCCAGGGAGCCATCC 61.124 65.000 0.00 0.00 45.85 3.51
4529 5156 0.105246 CTAGTCCAGGGAGCCATCCT 60.105 60.000 0.00 0.00 45.85 3.24
4530 5157 1.148027 CTAGTCCAGGGAGCCATCCTA 59.852 57.143 0.00 0.00 45.85 2.94
4531 5158 0.399233 AGTCCAGGGAGCCATCCTAC 60.399 60.000 0.00 0.00 45.85 3.18
4532 5159 0.691078 GTCCAGGGAGCCATCCTACA 60.691 60.000 0.00 0.00 45.85 2.74
4533 5160 0.268869 TCCAGGGAGCCATCCTACAT 59.731 55.000 0.00 0.00 45.85 2.29
4534 5161 0.399454 CCAGGGAGCCATCCTACATG 59.601 60.000 0.00 0.00 45.85 3.21
4535 5162 1.135094 CAGGGAGCCATCCTACATGT 58.865 55.000 2.69 2.69 45.85 3.21
4536 5163 1.492176 CAGGGAGCCATCCTACATGTT 59.508 52.381 2.30 0.00 45.85 2.71
4537 5164 1.492176 AGGGAGCCATCCTACATGTTG 59.508 52.381 2.30 0.84 45.85 3.33
4538 5165 1.312815 GGAGCCATCCTACATGTTGC 58.687 55.000 2.30 0.00 42.94 4.17
4539 5166 1.133976 GGAGCCATCCTACATGTTGCT 60.134 52.381 2.30 3.04 42.94 3.91
4540 5167 2.104792 GGAGCCATCCTACATGTTGCTA 59.895 50.000 2.30 0.00 42.94 3.49
4541 5168 3.134458 GAGCCATCCTACATGTTGCTAC 58.866 50.000 2.30 0.00 0.00 3.58
4542 5169 2.158755 AGCCATCCTACATGTTGCTACC 60.159 50.000 2.30 0.00 0.00 3.18
4543 5170 2.421388 GCCATCCTACATGTTGCTACCA 60.421 50.000 2.30 0.00 0.00 3.25
4544 5171 3.748668 GCCATCCTACATGTTGCTACCAT 60.749 47.826 2.30 0.00 0.00 3.55
4545 5172 3.817084 CCATCCTACATGTTGCTACCATG 59.183 47.826 2.30 8.60 44.17 3.66
4546 5173 4.444733 CCATCCTACATGTTGCTACCATGA 60.445 45.833 2.30 0.00 41.78 3.07
4547 5174 4.137116 TCCTACATGTTGCTACCATGAC 57.863 45.455 2.30 0.00 41.78 3.06
4548 5175 3.517500 TCCTACATGTTGCTACCATGACA 59.482 43.478 2.30 0.00 41.78 3.58
4549 5176 3.623060 CCTACATGTTGCTACCATGACAC 59.377 47.826 2.30 0.00 41.78 3.67
4550 5177 2.436417 ACATGTTGCTACCATGACACC 58.564 47.619 14.80 0.00 41.78 4.16
4551 5178 1.745087 CATGTTGCTACCATGACACCC 59.255 52.381 0.00 0.00 41.78 4.61
4552 5179 0.037590 TGTTGCTACCATGACACCCC 59.962 55.000 0.00 0.00 0.00 4.95
4553 5180 0.037590 GTTGCTACCATGACACCCCA 59.962 55.000 0.00 0.00 0.00 4.96
4554 5181 0.327924 TTGCTACCATGACACCCCAG 59.672 55.000 0.00 0.00 0.00 4.45
4555 5182 1.452108 GCTACCATGACACCCCAGC 60.452 63.158 0.00 0.00 0.00 4.85
4556 5183 1.990424 CTACCATGACACCCCAGCA 59.010 57.895 0.00 0.00 0.00 4.41
4557 5184 0.327924 CTACCATGACACCCCAGCAA 59.672 55.000 0.00 0.00 0.00 3.91
4558 5185 0.037590 TACCATGACACCCCAGCAAC 59.962 55.000 0.00 0.00 0.00 4.17
4559 5186 1.228521 CCATGACACCCCAGCAACA 60.229 57.895 0.00 0.00 0.00 3.33
4560 5187 1.246056 CCATGACACCCCAGCAACAG 61.246 60.000 0.00 0.00 0.00 3.16
4561 5188 1.075482 ATGACACCCCAGCAACAGG 59.925 57.895 0.00 0.00 0.00 4.00
4562 5189 1.719063 ATGACACCCCAGCAACAGGT 61.719 55.000 0.00 0.00 0.00 4.00
4564 5191 2.195683 CACCCCAGCAACAGGTGT 59.804 61.111 6.97 0.00 44.95 4.16
4565 5192 1.898574 CACCCCAGCAACAGGTGTC 60.899 63.158 6.97 0.00 44.95 3.67
4566 5193 2.382770 ACCCCAGCAACAGGTGTCA 61.383 57.895 0.00 0.00 30.97 3.58
4567 5194 1.075482 CCCCAGCAACAGGTGTCAT 59.925 57.895 0.00 0.00 0.00 3.06
4568 5195 1.246056 CCCCAGCAACAGGTGTCATG 61.246 60.000 0.00 0.00 0.00 3.07
4569 5196 1.582968 CCAGCAACAGGTGTCATGC 59.417 57.895 0.00 0.00 39.06 4.06
4570 5197 1.174078 CCAGCAACAGGTGTCATGCA 61.174 55.000 8.98 0.00 41.18 3.96
4571 5198 0.669619 CAGCAACAGGTGTCATGCAA 59.330 50.000 8.98 0.00 41.18 4.08
4572 5199 1.067364 CAGCAACAGGTGTCATGCAAA 59.933 47.619 8.98 0.00 41.18 3.68
4573 5200 1.755959 AGCAACAGGTGTCATGCAAAA 59.244 42.857 8.98 0.00 41.18 2.44
4574 5201 2.168106 AGCAACAGGTGTCATGCAAAAA 59.832 40.909 8.98 0.00 41.18 1.94
4618 5245 9.454859 TTTTTCAGATTTGGGTTATTTTGTGTT 57.545 25.926 0.00 0.00 0.00 3.32
4619 5246 8.430801 TTTCAGATTTGGGTTATTTTGTGTTG 57.569 30.769 0.00 0.00 0.00 3.33
4620 5247 7.353414 TCAGATTTGGGTTATTTTGTGTTGA 57.647 32.000 0.00 0.00 0.00 3.18
4621 5248 7.786030 TCAGATTTGGGTTATTTTGTGTTGAA 58.214 30.769 0.00 0.00 0.00 2.69
4622 5249 7.925483 TCAGATTTGGGTTATTTTGTGTTGAAG 59.075 33.333 0.00 0.00 0.00 3.02
4623 5250 7.710475 CAGATTTGGGTTATTTTGTGTTGAAGT 59.290 33.333 0.00 0.00 0.00 3.01
4624 5251 8.264347 AGATTTGGGTTATTTTGTGTTGAAGTT 58.736 29.630 0.00 0.00 0.00 2.66
4625 5252 8.800370 ATTTGGGTTATTTTGTGTTGAAGTTT 57.200 26.923 0.00 0.00 0.00 2.66
4626 5253 8.622948 TTTGGGTTATTTTGTGTTGAAGTTTT 57.377 26.923 0.00 0.00 0.00 2.43
4627 5254 9.720769 TTTGGGTTATTTTGTGTTGAAGTTTTA 57.279 25.926 0.00 0.00 0.00 1.52
4628 5255 8.705048 TGGGTTATTTTGTGTTGAAGTTTTAC 57.295 30.769 0.00 0.00 0.00 2.01
4629 5256 8.311836 TGGGTTATTTTGTGTTGAAGTTTTACA 58.688 29.630 0.00 0.00 0.00 2.41
4630 5257 9.152595 GGGTTATTTTGTGTTGAAGTTTTACAA 57.847 29.630 0.00 0.00 0.00 2.41
4634 5261 7.659652 TTTTGTGTTGAAGTTTTACAAAGGG 57.340 32.000 0.00 0.00 40.83 3.95
4635 5262 5.331876 TGTGTTGAAGTTTTACAAAGGGG 57.668 39.130 0.00 0.00 0.00 4.79
4636 5263 4.116961 GTGTTGAAGTTTTACAAAGGGGC 58.883 43.478 0.00 0.00 0.00 5.80
4637 5264 4.027437 TGTTGAAGTTTTACAAAGGGGCT 58.973 39.130 0.00 0.00 0.00 5.19
4638 5265 5.068067 GTGTTGAAGTTTTACAAAGGGGCTA 59.932 40.000 0.00 0.00 0.00 3.93
4639 5266 5.300792 TGTTGAAGTTTTACAAAGGGGCTAG 59.699 40.000 0.00 0.00 0.00 3.42
4640 5267 5.056553 TGAAGTTTTACAAAGGGGCTAGT 57.943 39.130 0.00 0.00 0.00 2.57
4641 5268 5.451354 TGAAGTTTTACAAAGGGGCTAGTT 58.549 37.500 0.00 0.00 0.00 2.24
4642 5269 5.894964 TGAAGTTTTACAAAGGGGCTAGTTT 59.105 36.000 0.00 0.00 0.00 2.66
4643 5270 6.040054 TGAAGTTTTACAAAGGGGCTAGTTTC 59.960 38.462 0.00 0.00 0.00 2.78
4644 5271 4.517832 AGTTTTACAAAGGGGCTAGTTTCG 59.482 41.667 0.00 0.00 0.00 3.46
4645 5272 3.775261 TTACAAAGGGGCTAGTTTCGT 57.225 42.857 0.00 0.00 0.00 3.85
4646 5273 2.180432 ACAAAGGGGCTAGTTTCGTC 57.820 50.000 0.00 0.00 0.00 4.20
4647 5274 1.271217 ACAAAGGGGCTAGTTTCGTCC 60.271 52.381 0.00 0.00 0.00 4.79
4648 5275 1.061546 AAAGGGGCTAGTTTCGTCCA 58.938 50.000 0.00 0.00 0.00 4.02
4649 5276 1.286248 AAGGGGCTAGTTTCGTCCAT 58.714 50.000 0.00 0.00 0.00 3.41
4650 5277 1.286248 AGGGGCTAGTTTCGTCCATT 58.714 50.000 0.00 0.00 0.00 3.16
4651 5278 1.633945 AGGGGCTAGTTTCGTCCATTT 59.366 47.619 0.00 0.00 0.00 2.32
4652 5279 2.041216 AGGGGCTAGTTTCGTCCATTTT 59.959 45.455 0.00 0.00 0.00 1.82
4653 5280 2.422479 GGGGCTAGTTTCGTCCATTTTC 59.578 50.000 0.00 0.00 0.00 2.29
4654 5281 3.078837 GGGCTAGTTTCGTCCATTTTCA 58.921 45.455 0.00 0.00 0.00 2.69
4655 5282 3.119955 GGGCTAGTTTCGTCCATTTTCAC 60.120 47.826 0.00 0.00 0.00 3.18
4656 5283 3.751698 GGCTAGTTTCGTCCATTTTCACT 59.248 43.478 0.00 0.00 0.00 3.41
4657 5284 4.933400 GGCTAGTTTCGTCCATTTTCACTA 59.067 41.667 0.00 0.00 0.00 2.74
4658 5285 5.163884 GGCTAGTTTCGTCCATTTTCACTAC 60.164 44.000 0.00 0.00 0.00 2.73
4659 5286 5.638234 GCTAGTTTCGTCCATTTTCACTACT 59.362 40.000 0.00 0.00 0.00 2.57
4660 5287 5.924475 AGTTTCGTCCATTTTCACTACTG 57.076 39.130 0.00 0.00 0.00 2.74
4661 5288 4.213482 AGTTTCGTCCATTTTCACTACTGC 59.787 41.667 0.00 0.00 0.00 4.40
4662 5289 2.695359 TCGTCCATTTTCACTACTGCC 58.305 47.619 0.00 0.00 0.00 4.85
4663 5290 1.393539 CGTCCATTTTCACTACTGCCG 59.606 52.381 0.00 0.00 0.00 5.69
4664 5291 1.130561 GTCCATTTTCACTACTGCCGC 59.869 52.381 0.00 0.00 0.00 6.53
4665 5292 1.003118 TCCATTTTCACTACTGCCGCT 59.997 47.619 0.00 0.00 0.00 5.52
4666 5293 1.131126 CCATTTTCACTACTGCCGCTG 59.869 52.381 0.00 0.00 0.00 5.18
4667 5294 1.131126 CATTTTCACTACTGCCGCTGG 59.869 52.381 2.06 0.00 0.00 4.85
4677 5304 3.127533 GCCGCTGGCTTTCGTGAT 61.128 61.111 11.61 0.00 46.69 3.06
4678 5305 3.093278 CCGCTGGCTTTCGTGATC 58.907 61.111 0.00 0.00 0.00 2.92
4679 5306 2.697425 CGCTGGCTTTCGTGATCG 59.303 61.111 0.00 0.00 38.55 3.69
4680 5307 1.805539 CGCTGGCTTTCGTGATCGA 60.806 57.895 0.00 0.00 44.66 3.59
4681 5308 1.148157 CGCTGGCTTTCGTGATCGAT 61.148 55.000 0.00 0.00 45.65 3.59
4682 5309 0.302890 GCTGGCTTTCGTGATCGATG 59.697 55.000 0.54 0.00 45.65 3.84
4683 5310 0.302890 CTGGCTTTCGTGATCGATGC 59.697 55.000 0.54 0.00 45.65 3.91
4684 5311 0.390998 TGGCTTTCGTGATCGATGCA 60.391 50.000 0.54 0.00 45.65 3.96
4685 5312 0.026803 GGCTTTCGTGATCGATGCAC 59.973 55.000 0.54 10.08 45.65 4.57
4686 5313 1.002366 GCTTTCGTGATCGATGCACT 58.998 50.000 19.05 0.00 45.65 4.40
4687 5314 1.267235 GCTTTCGTGATCGATGCACTG 60.267 52.381 19.05 14.48 45.65 3.66
4688 5315 0.721154 TTTCGTGATCGATGCACTGC 59.279 50.000 19.05 0.00 45.65 4.40
4689 5316 0.389687 TTCGTGATCGATGCACTGCA 60.390 50.000 19.05 6.09 45.65 4.41
4690 5317 1.078201 TCGTGATCGATGCACTGCAC 61.078 55.000 5.67 12.26 41.35 4.57
4691 5318 1.346197 GTGATCGATGCACTGCACG 59.654 57.895 5.67 12.06 43.04 5.34
4692 5319 2.322422 GATCGATGCACTGCACGC 59.678 61.111 5.67 0.61 43.04 5.34
4693 5320 3.482716 GATCGATGCACTGCACGCG 62.483 63.158 17.58 17.58 43.04 6.01
4695 5322 4.489795 CGATGCACTGCACGCGTC 62.490 66.667 9.86 13.35 43.04 5.19
4696 5323 3.413861 GATGCACTGCACGCGTCA 61.414 61.111 9.86 10.11 43.04 4.35
4697 5324 2.953605 GATGCACTGCACGCGTCAA 61.954 57.895 9.86 0.00 43.04 3.18
4698 5325 2.244436 GATGCACTGCACGCGTCAAT 62.244 55.000 9.86 0.00 43.04 2.57
4699 5326 2.202222 GCACTGCACGCGTCAATC 60.202 61.111 9.86 0.00 0.00 2.67
4700 5327 2.476051 CACTGCACGCGTCAATCC 59.524 61.111 9.86 0.00 0.00 3.01
4701 5328 3.112075 ACTGCACGCGTCAATCCG 61.112 61.111 9.86 0.00 0.00 4.18
4702 5329 3.853330 CTGCACGCGTCAATCCGG 61.853 66.667 9.86 0.00 0.00 5.14
4708 5335 2.509786 GCGTCAATCCGGGCGTTA 60.510 61.111 0.00 0.00 0.00 3.18
4709 5336 1.885850 GCGTCAATCCGGGCGTTAT 60.886 57.895 0.00 0.00 0.00 1.89
4710 5337 1.828331 GCGTCAATCCGGGCGTTATC 61.828 60.000 0.00 0.00 0.00 1.75
4711 5338 1.219522 CGTCAATCCGGGCGTTATCC 61.220 60.000 0.00 0.00 0.00 2.59
4712 5339 0.179067 GTCAATCCGGGCGTTATCCA 60.179 55.000 0.00 0.00 0.00 3.41
4713 5340 0.542333 TCAATCCGGGCGTTATCCAA 59.458 50.000 0.00 0.00 0.00 3.53
4714 5341 0.661020 CAATCCGGGCGTTATCCAAC 59.339 55.000 0.00 0.00 0.00 3.77
4715 5342 0.253610 AATCCGGGCGTTATCCAACA 59.746 50.000 0.00 0.00 34.05 3.33
4716 5343 0.179056 ATCCGGGCGTTATCCAACAG 60.179 55.000 0.00 0.00 34.05 3.16
4717 5344 2.469516 CCGGGCGTTATCCAACAGC 61.470 63.158 0.00 0.00 34.05 4.40
4718 5345 2.469516 CGGGCGTTATCCAACAGCC 61.470 63.158 12.06 12.06 45.51 4.85
4719 5346 2.469516 GGGCGTTATCCAACAGCCG 61.470 63.158 13.30 0.00 46.35 5.52
4720 5347 1.448893 GGCGTTATCCAACAGCCGA 60.449 57.895 7.32 0.00 41.23 5.54
4721 5348 0.814010 GGCGTTATCCAACAGCCGAT 60.814 55.000 7.32 0.00 41.23 4.18
4722 5349 0.304705 GCGTTATCCAACAGCCGATG 59.695 55.000 0.00 0.00 34.05 3.84
4723 5350 0.937304 CGTTATCCAACAGCCGATGG 59.063 55.000 0.00 0.00 36.42 3.51
4724 5351 1.472552 CGTTATCCAACAGCCGATGGA 60.473 52.381 0.87 0.87 46.97 3.41
4726 5353 4.961637 TCCAACAGCCGATGGATG 57.038 55.556 0.00 0.00 45.59 3.51
4727 5354 1.224315 TCCAACAGCCGATGGATGG 59.776 57.895 6.02 4.77 44.23 3.51
4728 5355 1.224315 CCAACAGCCGATGGATGGA 59.776 57.895 6.02 0.00 44.23 3.41
4729 5356 0.394216 CCAACAGCCGATGGATGGAA 60.394 55.000 6.02 0.00 44.23 3.53
4730 5357 1.462616 CAACAGCCGATGGATGGAAA 58.537 50.000 6.02 0.00 44.23 3.13
4731 5358 1.133025 CAACAGCCGATGGATGGAAAC 59.867 52.381 6.02 0.00 44.23 2.78
4732 5359 0.394352 ACAGCCGATGGATGGAAACC 60.394 55.000 6.02 0.00 44.23 3.27
4733 5360 0.394216 CAGCCGATGGATGGAAACCA 60.394 55.000 0.00 0.00 45.53 3.67
4734 5361 0.394352 AGCCGATGGATGGAAACCAC 60.394 55.000 0.00 0.00 43.65 4.16
4735 5362 0.394352 GCCGATGGATGGAAACCACT 60.394 55.000 0.00 0.00 43.65 4.00
4736 5363 1.382522 CCGATGGATGGAAACCACTG 58.617 55.000 0.00 0.00 43.65 3.66
4737 5364 0.734889 CGATGGATGGAAACCACTGC 59.265 55.000 0.00 0.00 43.65 4.40
4738 5365 0.734889 GATGGATGGAAACCACTGCG 59.265 55.000 0.00 0.00 43.65 5.18
4739 5366 0.327924 ATGGATGGAAACCACTGCGA 59.672 50.000 0.00 0.00 43.65 5.10
4740 5367 0.327924 TGGATGGAAACCACTGCGAT 59.672 50.000 0.00 0.00 31.77 4.58
4741 5368 1.271871 TGGATGGAAACCACTGCGATT 60.272 47.619 0.00 0.00 31.77 3.34
4742 5369 2.026729 TGGATGGAAACCACTGCGATTA 60.027 45.455 0.00 0.00 31.77 1.75
4743 5370 3.013921 GGATGGAAACCACTGCGATTAA 58.986 45.455 0.00 0.00 35.80 1.40
4744 5371 3.065371 GGATGGAAACCACTGCGATTAAG 59.935 47.826 0.00 0.00 35.80 1.85
4745 5372 3.134574 TGGAAACCACTGCGATTAAGT 57.865 42.857 0.00 0.00 0.00 2.24
4746 5373 3.071479 TGGAAACCACTGCGATTAAGTC 58.929 45.455 0.00 0.00 0.00 3.01
4747 5374 3.071479 GGAAACCACTGCGATTAAGTCA 58.929 45.455 0.00 0.00 0.00 3.41
4748 5375 3.500680 GGAAACCACTGCGATTAAGTCAA 59.499 43.478 0.00 0.00 0.00 3.18
4749 5376 4.378459 GGAAACCACTGCGATTAAGTCAAG 60.378 45.833 0.00 0.00 0.00 3.02
4750 5377 2.076863 ACCACTGCGATTAAGTCAAGC 58.923 47.619 0.00 0.00 0.00 4.01
4751 5378 2.076100 CCACTGCGATTAAGTCAAGCA 58.924 47.619 0.00 0.00 36.34 3.91
4756 5383 2.938451 TGCGATTAAGTCAAGCAGATGG 59.062 45.455 0.00 0.00 33.57 3.51
4757 5384 3.198068 GCGATTAAGTCAAGCAGATGGA 58.802 45.455 0.00 0.00 0.00 3.41
4758 5385 3.001736 GCGATTAAGTCAAGCAGATGGAC 59.998 47.826 0.00 0.00 0.00 4.02
4759 5386 3.243877 CGATTAAGTCAAGCAGATGGACG 59.756 47.826 0.00 0.00 36.68 4.79
4760 5387 2.010145 TAAGTCAAGCAGATGGACGC 57.990 50.000 0.00 0.00 36.68 5.19
4761 5388 0.035317 AAGTCAAGCAGATGGACGCA 59.965 50.000 0.00 0.00 36.68 5.24
4762 5389 0.251354 AGTCAAGCAGATGGACGCAT 59.749 50.000 0.00 0.00 36.68 4.73
4763 5390 1.089920 GTCAAGCAGATGGACGCATT 58.910 50.000 0.00 0.00 0.00 3.56
4764 5391 1.470098 GTCAAGCAGATGGACGCATTT 59.530 47.619 0.00 0.00 0.00 2.32
4765 5392 2.095059 GTCAAGCAGATGGACGCATTTT 60.095 45.455 0.00 0.00 0.00 1.82
4766 5393 2.162208 TCAAGCAGATGGACGCATTTTC 59.838 45.455 0.00 0.00 0.00 2.29
4767 5394 1.098050 AGCAGATGGACGCATTTTCC 58.902 50.000 0.00 0.00 0.00 3.13
4768 5395 1.098050 GCAGATGGACGCATTTTCCT 58.902 50.000 0.00 0.00 33.84 3.36
4769 5396 2.092968 AGCAGATGGACGCATTTTCCTA 60.093 45.455 0.00 0.00 33.84 2.94
4770 5397 2.289002 GCAGATGGACGCATTTTCCTAG 59.711 50.000 0.00 0.00 33.84 3.02
4771 5398 2.874701 CAGATGGACGCATTTTCCTAGG 59.125 50.000 0.82 0.82 33.84 3.02
4772 5399 1.604278 GATGGACGCATTTTCCTAGGC 59.396 52.381 2.96 0.00 33.84 3.93
4788 5415 4.043037 CTAGGCGAGGAAGAAAATACGT 57.957 45.455 0.00 0.00 0.00 3.57
4789 5416 5.179045 CTAGGCGAGGAAGAAAATACGTA 57.821 43.478 0.00 0.00 0.00 3.57
4790 5417 4.043037 AGGCGAGGAAGAAAATACGTAG 57.957 45.455 0.08 0.00 0.00 3.51
4791 5418 3.698040 AGGCGAGGAAGAAAATACGTAGA 59.302 43.478 0.08 0.00 0.00 2.59
4792 5419 4.043073 GGCGAGGAAGAAAATACGTAGAG 58.957 47.826 0.08 0.00 0.00 2.43
4793 5420 4.201990 GGCGAGGAAGAAAATACGTAGAGA 60.202 45.833 0.08 0.00 0.00 3.10
4794 5421 5.338365 GCGAGGAAGAAAATACGTAGAGAA 58.662 41.667 0.08 0.00 0.00 2.87
4795 5422 5.456173 GCGAGGAAGAAAATACGTAGAGAAG 59.544 44.000 0.08 0.00 0.00 2.85
4796 5423 5.972382 CGAGGAAGAAAATACGTAGAGAAGG 59.028 44.000 0.08 0.00 0.00 3.46
4797 5424 6.183360 CGAGGAAGAAAATACGTAGAGAAGGA 60.183 42.308 0.08 0.00 0.00 3.36
4798 5425 7.477945 AGGAAGAAAATACGTAGAGAAGGAA 57.522 36.000 0.08 0.00 0.00 3.36
4799 5426 7.321908 AGGAAGAAAATACGTAGAGAAGGAAC 58.678 38.462 0.08 0.00 0.00 3.62
4811 5438 3.471620 AGGAACTTCAGCTCGCCA 58.528 55.556 0.00 0.00 27.25 5.69
4812 5439 1.294780 AGGAACTTCAGCTCGCCAG 59.705 57.895 0.00 0.00 27.25 4.85
4813 5440 1.188219 AGGAACTTCAGCTCGCCAGA 61.188 55.000 0.00 0.00 27.25 3.86
4814 5441 0.320771 GGAACTTCAGCTCGCCAGAA 60.321 55.000 0.00 0.00 0.00 3.02
4815 5442 1.512926 GAACTTCAGCTCGCCAGAAA 58.487 50.000 0.00 0.00 0.00 2.52
4816 5443 1.195674 GAACTTCAGCTCGCCAGAAAC 59.804 52.381 0.00 0.00 0.00 2.78
4817 5444 0.946221 ACTTCAGCTCGCCAGAAACG 60.946 55.000 0.00 0.00 0.00 3.60
4818 5445 0.667487 CTTCAGCTCGCCAGAAACGA 60.667 55.000 0.00 0.00 38.02 3.85
4823 5450 2.048222 TCGCCAGAAACGAGCCAG 60.048 61.111 0.00 0.00 33.96 4.85
4824 5451 3.121030 CGCCAGAAACGAGCCAGG 61.121 66.667 0.00 0.00 0.00 4.45
4825 5452 3.435186 GCCAGAAACGAGCCAGGC 61.435 66.667 1.84 1.84 34.71 4.85
4826 5453 2.747855 CCAGAAACGAGCCAGGCC 60.748 66.667 8.22 0.00 0.00 5.19
4827 5454 2.747855 CAGAAACGAGCCAGGCCC 60.748 66.667 8.22 0.00 0.00 5.80
4828 5455 3.249189 AGAAACGAGCCAGGCCCA 61.249 61.111 8.22 0.00 0.00 5.36
4829 5456 2.747855 GAAACGAGCCAGGCCCAG 60.748 66.667 8.22 1.87 0.00 4.45
4830 5457 3.553095 GAAACGAGCCAGGCCCAGT 62.553 63.158 8.22 2.61 0.00 4.00
4831 5458 3.133365 AAACGAGCCAGGCCCAGTT 62.133 57.895 8.22 9.40 0.00 3.16
4832 5459 2.640581 AAACGAGCCAGGCCCAGTTT 62.641 55.000 18.54 18.54 0.00 2.66
4833 5460 3.058160 CGAGCCAGGCCCAGTTTG 61.058 66.667 8.22 0.00 0.00 2.93
4834 5461 2.677875 GAGCCAGGCCCAGTTTGG 60.678 66.667 8.22 0.02 37.25 3.28
4835 5462 3.185203 AGCCAGGCCCAGTTTGGA 61.185 61.111 8.22 0.00 40.96 3.53
4836 5463 2.203625 GCCAGGCCCAGTTTGGAA 60.204 61.111 12.05 0.00 40.96 3.53
4837 5464 2.574018 GCCAGGCCCAGTTTGGAAC 61.574 63.158 12.05 0.00 40.96 3.62
4838 5465 1.153756 CCAGGCCCAGTTTGGAACT 59.846 57.895 0.00 0.00 40.96 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.358939 TAAAAGGAACTCGTCTCGCC 57.641 50.000 0.00 0.00 38.49 5.54
46 47 5.734720 CTTTTGTAGCAGATTCCCTGTCTA 58.265 41.667 0.00 0.00 44.71 2.59
82 83 4.022329 ACATTCATCGCGACATATAGGACA 60.022 41.667 12.93 0.00 0.00 4.02
86 87 3.061295 GCCACATTCATCGCGACATATAG 59.939 47.826 12.93 2.48 0.00 1.31
88 89 1.800586 GCCACATTCATCGCGACATAT 59.199 47.619 12.93 1.24 0.00 1.78
99 100 3.615155 TCCATGATAAACGCCACATTCA 58.385 40.909 0.00 0.00 0.00 2.57
116 117 7.386848 CGTTGTTTATTCTTACCGGATATCCAT 59.613 37.037 21.70 11.26 35.14 3.41
119 120 6.925165 TCCGTTGTTTATTCTTACCGGATATC 59.075 38.462 9.46 0.00 38.23 1.63
142 143 6.341316 TCAAAGTAGCTAGATGTGACATTCC 58.659 40.000 0.00 0.00 0.00 3.01
164 165 4.365514 TCACTATGGGCAAGAACTTTCA 57.634 40.909 0.00 0.00 0.00 2.69
189 190 5.245531 GTGAAGATAGGGTGTTCATGACAA 58.754 41.667 0.00 0.00 41.51 3.18
191 192 3.865745 CGTGAAGATAGGGTGTTCATGAC 59.134 47.826 0.00 0.00 45.30 3.06
213 214 6.581712 ACCAAATGATACATGCCCAATTTAC 58.418 36.000 0.00 0.00 0.00 2.01
219 220 4.081198 GGAAAACCAAATGATACATGCCCA 60.081 41.667 0.00 0.00 0.00 5.36
220 221 4.081198 TGGAAAACCAAATGATACATGCCC 60.081 41.667 0.00 0.00 0.00 5.36
223 224 5.868801 GGTGTGGAAAACCAAATGATACATG 59.131 40.000 0.00 0.00 46.44 3.21
248 249 2.036346 GCCCAAGCAAGTGTTCTTCATT 59.964 45.455 0.00 0.00 39.53 2.57
249 250 1.615392 GCCCAAGCAAGTGTTCTTCAT 59.385 47.619 0.00 0.00 39.53 2.57
250 251 1.032014 GCCCAAGCAAGTGTTCTTCA 58.968 50.000 0.00 0.00 39.53 3.02
251 252 1.268079 GAGCCCAAGCAAGTGTTCTTC 59.732 52.381 0.00 0.00 43.56 2.87
252 253 1.133668 AGAGCCCAAGCAAGTGTTCTT 60.134 47.619 0.00 0.00 43.56 2.52
253 254 0.475906 AGAGCCCAAGCAAGTGTTCT 59.524 50.000 0.00 0.00 43.56 3.01
254 255 1.322442 AAGAGCCCAAGCAAGTGTTC 58.678 50.000 0.00 0.00 43.56 3.18
255 256 1.780503 AAAGAGCCCAAGCAAGTGTT 58.219 45.000 0.00 0.00 43.56 3.32
256 257 2.230660 GTAAAGAGCCCAAGCAAGTGT 58.769 47.619 0.00 0.00 43.56 3.55
257 258 1.541588 GGTAAAGAGCCCAAGCAAGTG 59.458 52.381 0.00 0.00 43.56 3.16
294 295 5.523188 TGTTGCTTCATGTTGATTTTGTTCC 59.477 36.000 0.00 0.00 0.00 3.62
296 297 5.873712 TGTGTTGCTTCATGTTGATTTTGTT 59.126 32.000 0.00 0.00 0.00 2.83
298 299 5.970140 TGTGTTGCTTCATGTTGATTTTG 57.030 34.783 0.00 0.00 0.00 2.44
341 342 2.371179 TCATCTCTCCCCATTCATGCTC 59.629 50.000 0.00 0.00 0.00 4.26
353 354 4.019174 TGGGCTTCAAAATTCATCTCTCC 58.981 43.478 0.00 0.00 0.00 3.71
375 376 3.319122 GGGAGATGCTTTTGTCAAAGTGT 59.681 43.478 0.00 0.00 41.51 3.55
407 408 1.803334 TAAACCACATGACGCTCCAC 58.197 50.000 0.00 0.00 0.00 4.02
497 498 5.187772 GGGCCCACTTGATTTATCTTCTTTT 59.812 40.000 19.95 0.00 0.00 2.27
501 502 3.885901 GAGGGCCCACTTGATTTATCTTC 59.114 47.826 27.56 2.90 0.00 2.87
504 505 3.584733 AGAGGGCCCACTTGATTTATC 57.415 47.619 27.56 8.56 0.00 1.75
506 507 3.202151 CCTTAGAGGGCCCACTTGATTTA 59.798 47.826 27.84 4.89 0.00 1.40
524 527 6.640518 ACTCACTTCGCATATCTTTTCCTTA 58.359 36.000 0.00 0.00 0.00 2.69
550 553 3.620419 ATGTTCATGTCGGGGCGCA 62.620 57.895 10.83 0.00 0.00 6.09
551 554 2.824041 ATGTTCATGTCGGGGCGC 60.824 61.111 0.00 0.00 0.00 6.53
552 555 2.472059 CCATGTTCATGTCGGGGCG 61.472 63.158 11.13 0.00 0.00 6.13
557 560 3.977579 CGATCTAGACCATGTTCATGTCG 59.022 47.826 11.13 8.16 0.00 4.35
559 562 5.069648 ACATCGATCTAGACCATGTTCATGT 59.930 40.000 11.13 0.00 0.00 3.21
579 582 1.891150 GAATCATGCCCCATCCACATC 59.109 52.381 0.00 0.00 0.00 3.06
640 645 8.043710 AGAAAGTCCTAAGTACTTCCATTCATG 58.956 37.037 12.39 0.00 36.17 3.07
679 684 7.881142 CAAATTGGTTTGTTAGGTCATCACTA 58.119 34.615 0.00 0.00 39.85 2.74
698 703 9.987272 TCACATATATCTCTCTGGTACAAATTG 57.013 33.333 0.00 0.00 38.70 2.32
855 865 1.134521 TGGACGTCCCAGATTATGCAC 60.135 52.381 31.19 2.33 40.82 4.57
856 866 1.199615 TGGACGTCCCAGATTATGCA 58.800 50.000 31.19 5.95 40.82 3.96
880 890 2.128035 CGTCGATTTGCTAGGACCATC 58.872 52.381 0.00 0.00 0.00 3.51
1107 1132 1.642952 GGGCAGAAGCGAAGAAGCAG 61.643 60.000 0.00 0.00 43.41 4.24
1178 1203 7.054751 TCGAGATCTATCACCTTCTTAGACAA 58.945 38.462 0.00 0.00 0.00 3.18
1183 1208 6.150307 GCTCATCGAGATCTATCACCTTCTTA 59.850 42.308 0.00 0.00 0.00 2.10
1344 1369 9.346725 CTGTCTGAAATTCTAAATTAAGGCAAC 57.653 33.333 0.00 0.00 0.00 4.17
1409 1442 7.014038 TGGCATCAAAAGGCAAAAATAAACAAT 59.986 29.630 0.00 0.00 38.71 2.71
1464 1511 1.886542 GTGGATGAACACAAAGGGACC 59.113 52.381 0.00 0.00 40.99 4.46
1505 1552 7.227873 TGACCATATAAGGACAACTGAACAAA 58.772 34.615 0.00 0.00 30.56 2.83
1509 1556 6.013725 ACACTGACCATATAAGGACAACTGAA 60.014 38.462 0.00 0.00 33.14 3.02
1557 1604 5.118286 AGGGCAAAAATCAACACTTTTGAG 58.882 37.500 10.58 0.00 42.53 3.02
1558 1605 5.096443 AGGGCAAAAATCAACACTTTTGA 57.904 34.783 10.58 0.00 42.53 2.69
1559 1606 5.118286 AGAGGGCAAAAATCAACACTTTTG 58.882 37.500 3.50 3.50 42.71 2.44
1560 1607 5.357742 AGAGGGCAAAAATCAACACTTTT 57.642 34.783 0.00 0.00 0.00 2.27
1561 1608 5.357742 AAGAGGGCAAAAATCAACACTTT 57.642 34.783 0.00 0.00 0.00 2.66
1562 1609 4.499696 CGAAGAGGGCAAAAATCAACACTT 60.500 41.667 0.00 0.00 0.00 3.16
1563 1610 3.004734 CGAAGAGGGCAAAAATCAACACT 59.995 43.478 0.00 0.00 0.00 3.55
1593 1640 4.145052 ACACATGTACAGTGAGAGTGAGA 58.855 43.478 23.52 0.00 40.16 3.27
1829 1904 3.052262 AGGATTCAGGATCTCTGTCTCCA 60.052 47.826 21.68 3.38 42.32 3.86
1881 1956 2.761465 GGCCTTCTGATCCCCCAGG 61.761 68.421 0.00 0.00 34.99 4.45
2073 2148 8.873215 ATATGTGTCCAGAATTTCTAAGTACG 57.127 34.615 0.00 0.00 0.00 3.67
2082 2157 5.018809 ACCTGCAATATGTGTCCAGAATTT 58.981 37.500 0.00 0.00 0.00 1.82
2179 2254 4.707030 TGATGCTAATGCCTGTTTGAAG 57.293 40.909 0.00 0.00 38.71 3.02
2184 2259 6.460676 GCTCTAAATTGATGCTAATGCCTGTT 60.461 38.462 0.00 0.00 38.71 3.16
2189 2264 7.941795 AAATGCTCTAAATTGATGCTAATGC 57.058 32.000 0.00 0.00 40.20 3.56
2415 2493 7.649057 AGAAAAGGTTAATTCTTCCGAAACTG 58.351 34.615 0.00 0.00 32.05 3.16
2576 2666 1.410517 TCAACCTGCTCGATCATCTCC 59.589 52.381 0.00 0.00 0.00 3.71
2902 2992 5.555966 TGCTCTACAACAAATGGTATGACA 58.444 37.500 0.00 0.00 0.00 3.58
3141 3232 8.932945 TCATACTTCTTTAGCAGTTGTGATAG 57.067 34.615 0.00 0.00 0.00 2.08
3146 3237 6.711277 TCCATCATACTTCTTTAGCAGTTGT 58.289 36.000 0.00 0.00 0.00 3.32
3152 3243 7.766278 TGAAGTTCTCCATCATACTTCTTTAGC 59.234 37.037 13.13 0.00 44.18 3.09
3246 3337 8.410141 CAGTTTAGTACTCCATTTGACCAAAAA 58.590 33.333 0.00 0.00 33.85 1.94
3247 3338 7.469456 GCAGTTTAGTACTCCATTTGACCAAAA 60.469 37.037 0.00 0.00 33.85 2.44
3248 3339 6.016610 GCAGTTTAGTACTCCATTTGACCAAA 60.017 38.462 0.00 0.00 33.85 3.28
3249 3340 5.472137 GCAGTTTAGTACTCCATTTGACCAA 59.528 40.000 0.00 0.00 33.85 3.67
3250 3341 5.001232 GCAGTTTAGTACTCCATTTGACCA 58.999 41.667 0.00 0.00 33.85 4.02
3251 3342 5.001232 TGCAGTTTAGTACTCCATTTGACC 58.999 41.667 0.00 0.00 33.85 4.02
3252 3343 6.426937 TCTTGCAGTTTAGTACTCCATTTGAC 59.573 38.462 0.00 0.00 33.85 3.18
3253 3344 6.530120 TCTTGCAGTTTAGTACTCCATTTGA 58.470 36.000 0.00 0.00 33.85 2.69
3254 3345 6.801539 TCTTGCAGTTTAGTACTCCATTTG 57.198 37.500 0.00 0.00 33.85 2.32
3255 3346 7.398024 AGATCTTGCAGTTTAGTACTCCATTT 58.602 34.615 0.00 0.00 33.85 2.32
3256 3347 6.951971 AGATCTTGCAGTTTAGTACTCCATT 58.048 36.000 0.00 0.00 33.85 3.16
3257 3348 6.552445 AGATCTTGCAGTTTAGTACTCCAT 57.448 37.500 0.00 0.00 33.85 3.41
3258 3349 6.360370 AAGATCTTGCAGTTTAGTACTCCA 57.640 37.500 7.30 0.00 33.85 3.86
3259 3350 8.035984 ACTAAAGATCTTGCAGTTTAGTACTCC 58.964 37.037 9.17 0.00 41.64 3.85
3260 3351 8.865001 CACTAAAGATCTTGCAGTTTAGTACTC 58.135 37.037 16.57 0.00 41.56 2.59
3261 3352 7.332182 GCACTAAAGATCTTGCAGTTTAGTACT 59.668 37.037 16.57 0.00 41.56 2.73
3275 3366 4.081420 CCCTACACACAGCACTAAAGATCT 60.081 45.833 0.00 0.00 0.00 2.75
3396 3489 8.359875 TGTTCCACACATCCAAACATTATAAT 57.640 30.769 0.00 0.00 0.00 1.28
3504 3607 0.034089 ACTGGGGATTAACCTGCAGC 60.034 55.000 8.66 0.00 38.98 5.25
3528 3631 1.346395 AGTGTTATCCACCTGAACGCA 59.654 47.619 0.00 0.00 45.74 5.24
3687 3791 1.598701 GGTTTCCTGCAGGCACATCC 61.599 60.000 28.91 19.53 34.44 3.51
3958 4126 1.753073 GCCAGCATATATGGATTGCCC 59.247 52.381 14.51 0.00 40.51 5.36
3977 4567 3.497031 GTTCTACGCTTGGCCGGC 61.497 66.667 21.18 21.18 0.00 6.13
3984 4574 3.746045 TCTCCAAACTGTTCTACGCTT 57.254 42.857 0.00 0.00 0.00 4.68
3987 4577 3.654414 AGCTTCTCCAAACTGTTCTACG 58.346 45.455 0.00 0.00 0.00 3.51
4025 4615 0.324943 TGGAAAGAGCAGGTGTAGCC 59.675 55.000 0.00 0.00 37.58 3.93
4026 4616 1.443802 GTGGAAAGAGCAGGTGTAGC 58.556 55.000 0.00 0.00 0.00 3.58
4028 4618 1.729586 AGGTGGAAAGAGCAGGTGTA 58.270 50.000 0.00 0.00 0.00 2.90
4029 4619 0.846693 AAGGTGGAAAGAGCAGGTGT 59.153 50.000 0.00 0.00 0.00 4.16
4030 4620 1.528129 GAAGGTGGAAAGAGCAGGTG 58.472 55.000 0.00 0.00 0.00 4.00
4032 4622 0.322906 GGGAAGGTGGAAAGAGCAGG 60.323 60.000 0.00 0.00 0.00 4.85
4033 4623 0.322906 GGGGAAGGTGGAAAGAGCAG 60.323 60.000 0.00 0.00 0.00 4.24
4035 4625 0.322906 CAGGGGAAGGTGGAAAGAGC 60.323 60.000 0.00 0.00 0.00 4.09
4037 4627 0.402861 ACCAGGGGAAGGTGGAAAGA 60.403 55.000 0.00 0.00 38.13 2.52
4038 4628 0.482887 AACCAGGGGAAGGTGGAAAG 59.517 55.000 0.00 0.00 39.86 2.62
4039 4629 0.938192 AAACCAGGGGAAGGTGGAAA 59.062 50.000 0.00 0.00 39.86 3.13
4040 4630 0.481128 GAAACCAGGGGAAGGTGGAA 59.519 55.000 0.00 0.00 39.86 3.53
4041 4631 1.432023 GGAAACCAGGGGAAGGTGGA 61.432 60.000 0.00 0.00 39.86 4.02
4042 4632 1.076727 GGAAACCAGGGGAAGGTGG 59.923 63.158 0.00 0.00 39.86 4.61
4043 4633 1.303317 CGGAAACCAGGGGAAGGTG 60.303 63.158 0.00 0.00 39.86 4.00
4044 4634 1.063654 TTCGGAAACCAGGGGAAGGT 61.064 55.000 0.00 0.00 42.34 3.50
4045 4635 0.111639 TTTCGGAAACCAGGGGAAGG 59.888 55.000 0.00 0.00 0.00 3.46
4047 4637 0.551879 TGTTTCGGAAACCAGGGGAA 59.448 50.000 25.99 7.20 40.67 3.97
4048 4638 0.109723 CTGTTTCGGAAACCAGGGGA 59.890 55.000 25.99 9.40 40.67 4.81
4049 4639 0.179001 ACTGTTTCGGAAACCAGGGG 60.179 55.000 25.99 14.94 40.67 4.79
4050 4640 1.202770 AGACTGTTTCGGAAACCAGGG 60.203 52.381 25.99 16.87 40.67 4.45
4053 4643 1.202722 GGGAGACTGTTTCGGAAACCA 60.203 52.381 25.99 15.28 40.67 3.67
4054 4644 1.071857 AGGGAGACTGTTTCGGAAACC 59.928 52.381 25.99 13.80 40.67 3.27
4055 4645 2.143925 CAGGGAGACTGTTTCGGAAAC 58.856 52.381 23.27 23.27 42.42 2.78
4056 4646 2.543777 CAGGGAGACTGTTTCGGAAA 57.456 50.000 0.00 0.00 42.42 3.13
4072 4662 2.124193 TGCGGATTGCCCATCAGG 60.124 61.111 0.00 0.00 45.60 3.86
4073 4663 2.484062 GGTGCGGATTGCCCATCAG 61.484 63.158 0.00 0.00 45.60 2.90
4074 4664 2.440065 GGTGCGGATTGCCCATCA 60.440 61.111 0.00 0.00 45.60 3.07
4075 4665 3.585990 CGGTGCGGATTGCCCATC 61.586 66.667 0.00 0.00 45.60 3.51
4107 4697 1.593787 CGGGCATCAGTCTGTCACT 59.406 57.895 0.00 0.00 34.67 3.41
4108 4698 2.103042 GCGGGCATCAGTCTGTCAC 61.103 63.158 0.00 0.00 0.00 3.67
4109 4699 2.265739 GCGGGCATCAGTCTGTCA 59.734 61.111 0.00 0.00 0.00 3.58
4111 4701 4.457496 CCGCGGGCATCAGTCTGT 62.457 66.667 20.10 0.00 0.00 3.41
4112 4702 2.572095 TAACCGCGGGCATCAGTCTG 62.572 60.000 31.76 0.00 0.00 3.51
4113 4703 2.355986 TAACCGCGGGCATCAGTCT 61.356 57.895 31.76 0.57 0.00 3.24
4114 4704 2.171725 GTAACCGCGGGCATCAGTC 61.172 63.158 31.76 6.82 0.00 3.51
4115 4705 2.125269 GTAACCGCGGGCATCAGT 60.125 61.111 31.76 2.42 0.00 3.41
4126 4716 8.363755 GTTGAGAAAATATATCGATCGTAACCG 58.636 37.037 15.94 0.00 0.00 4.44
4128 4718 8.363755 CCGTTGAGAAAATATATCGATCGTAAC 58.636 37.037 15.94 0.00 0.00 2.50
4155 4746 1.200020 GTGCTCCGTTTCAATTCAGGG 59.800 52.381 0.00 0.00 0.00 4.45
4332 4946 3.145551 CCCTGGTACGTCCCCTCG 61.146 72.222 0.00 0.00 34.77 4.63
4406 5033 1.599518 TTCATTTCCACGCGGCAGT 60.600 52.632 12.47 0.00 0.00 4.40
4414 5041 2.606108 GCCAATTCCGTTCATTTCCAC 58.394 47.619 0.00 0.00 0.00 4.02
4415 5042 1.548269 GGCCAATTCCGTTCATTTCCA 59.452 47.619 0.00 0.00 0.00 3.53
4417 5044 1.824852 AGGGCCAATTCCGTTCATTTC 59.175 47.619 6.18 0.00 0.00 2.17
4418 5045 1.937191 AGGGCCAATTCCGTTCATTT 58.063 45.000 6.18 0.00 0.00 2.32
4419 5046 1.937191 AAGGGCCAATTCCGTTCATT 58.063 45.000 6.18 0.00 28.94 2.57
4420 5047 2.818751 TAAGGGCCAATTCCGTTCAT 57.181 45.000 6.18 0.00 35.93 2.57
4421 5048 2.818751 ATAAGGGCCAATTCCGTTCA 57.181 45.000 6.18 0.00 35.93 3.18
4422 5049 3.020984 TGAATAAGGGCCAATTCCGTTC 58.979 45.455 21.86 10.45 35.93 3.95
4423 5050 3.094484 TGAATAAGGGCCAATTCCGTT 57.906 42.857 21.86 3.64 37.84 4.44
4424 5051 2.818751 TGAATAAGGGCCAATTCCGT 57.181 45.000 21.86 0.00 32.25 4.69
4425 5052 4.081697 AGTTTTGAATAAGGGCCAATTCCG 60.082 41.667 21.86 0.00 32.25 4.30
4426 5053 5.420725 AGTTTTGAATAAGGGCCAATTCC 57.579 39.130 21.86 11.16 32.25 3.01
4427 5054 6.463360 TGAAGTTTTGAATAAGGGCCAATTC 58.537 36.000 19.37 19.37 33.57 2.17
4428 5055 6.432403 TGAAGTTTTGAATAAGGGCCAATT 57.568 33.333 6.18 4.88 0.00 2.32
4429 5056 6.183361 TGTTGAAGTTTTGAATAAGGGCCAAT 60.183 34.615 6.18 0.00 0.00 3.16
4430 5057 5.129485 TGTTGAAGTTTTGAATAAGGGCCAA 59.871 36.000 6.18 0.00 0.00 4.52
4431 5058 4.651503 TGTTGAAGTTTTGAATAAGGGCCA 59.348 37.500 6.18 0.00 0.00 5.36
4432 5059 5.208463 TGTTGAAGTTTTGAATAAGGGCC 57.792 39.130 0.00 0.00 0.00 5.80
4433 5060 6.454795 TCATGTTGAAGTTTTGAATAAGGGC 58.545 36.000 0.00 0.00 0.00 5.19
4434 5061 8.885494 TTTCATGTTGAAGTTTTGAATAAGGG 57.115 30.769 0.00 0.00 37.70 3.95
4439 5066 9.211485 GGATCATTTCATGTTGAAGTTTTGAAT 57.789 29.630 0.00 0.00 37.70 2.57
4440 5067 7.656948 GGGATCATTTCATGTTGAAGTTTTGAA 59.343 33.333 0.00 0.00 37.70 2.69
4441 5068 7.153985 GGGATCATTTCATGTTGAAGTTTTGA 58.846 34.615 0.00 0.00 37.70 2.69
4442 5069 6.930164 TGGGATCATTTCATGTTGAAGTTTTG 59.070 34.615 0.00 0.00 37.70 2.44
4443 5070 7.065120 TGGGATCATTTCATGTTGAAGTTTT 57.935 32.000 0.00 0.00 37.70 2.43
4444 5071 6.669125 TGGGATCATTTCATGTTGAAGTTT 57.331 33.333 0.00 0.00 37.70 2.66
4445 5072 6.669125 TTGGGATCATTTCATGTTGAAGTT 57.331 33.333 0.00 0.00 37.70 2.66
4446 5073 6.666546 AGATTGGGATCATTTCATGTTGAAGT 59.333 34.615 0.00 0.00 34.79 3.01
4447 5074 7.108841 AGATTGGGATCATTTCATGTTGAAG 57.891 36.000 0.00 0.00 34.79 3.02
4448 5075 8.592529 TTAGATTGGGATCATTTCATGTTGAA 57.407 30.769 0.00 0.00 32.90 2.69
4449 5076 8.592529 TTTAGATTGGGATCATTTCATGTTGA 57.407 30.769 0.00 0.00 34.60 3.18
4450 5077 9.656040 TTTTTAGATTGGGATCATTTCATGTTG 57.344 29.630 0.00 0.00 34.60 3.33
4474 5101 9.065798 CCAAAGGGTCAATTTTGTGAAATATTT 57.934 29.630 0.00 0.00 34.44 1.40
4475 5102 7.174772 GCCAAAGGGTCAATTTTGTGAAATATT 59.825 33.333 0.00 0.00 33.67 1.28
4476 5103 6.654582 GCCAAAGGGTCAATTTTGTGAAATAT 59.345 34.615 0.00 0.00 33.67 1.28
4477 5104 5.994668 GCCAAAGGGTCAATTTTGTGAAATA 59.005 36.000 0.00 0.00 33.67 1.40
4478 5105 4.821260 GCCAAAGGGTCAATTTTGTGAAAT 59.179 37.500 0.00 0.00 35.17 2.17
4479 5106 4.195416 GCCAAAGGGTCAATTTTGTGAAA 58.805 39.130 0.00 0.00 33.52 2.69
4480 5107 3.198635 TGCCAAAGGGTCAATTTTGTGAA 59.801 39.130 0.00 0.00 33.52 3.18
4481 5108 2.768527 TGCCAAAGGGTCAATTTTGTGA 59.231 40.909 0.00 0.00 33.52 3.58
4482 5109 3.191078 TGCCAAAGGGTCAATTTTGTG 57.809 42.857 0.00 0.00 33.52 3.33
4483 5110 3.390639 TCATGCCAAAGGGTCAATTTTGT 59.609 39.130 0.00 0.00 33.52 2.83
4484 5111 3.747529 GTCATGCCAAAGGGTCAATTTTG 59.252 43.478 0.00 0.00 36.17 2.44
4485 5112 3.554752 CGTCATGCCAAAGGGTCAATTTT 60.555 43.478 0.00 0.00 36.17 1.82
4486 5113 2.029110 CGTCATGCCAAAGGGTCAATTT 60.029 45.455 0.00 0.00 36.17 1.82
4487 5114 1.545582 CGTCATGCCAAAGGGTCAATT 59.454 47.619 0.00 0.00 36.17 2.32
4488 5115 1.176527 CGTCATGCCAAAGGGTCAAT 58.823 50.000 0.00 0.00 36.17 2.57
4489 5116 1.523154 GCGTCATGCCAAAGGGTCAA 61.523 55.000 0.00 0.00 37.76 3.18
4490 5117 1.971167 GCGTCATGCCAAAGGGTCA 60.971 57.895 0.00 0.00 37.76 4.02
4491 5118 2.877691 GCGTCATGCCAAAGGGTC 59.122 61.111 0.00 0.00 37.76 4.46
4500 5127 1.227380 CTGGACTAGGGCGTCATGC 60.227 63.158 0.00 0.00 45.38 4.06
4501 5128 1.443407 CCTGGACTAGGGCGTCATG 59.557 63.158 0.00 0.00 43.33 3.07
4502 5129 3.956377 CCTGGACTAGGGCGTCAT 58.044 61.111 0.00 0.00 43.33 3.06
4509 5136 1.124477 GGATGGCTCCCTGGACTAGG 61.124 65.000 0.00 0.00 46.88 3.02
4510 5137 0.105246 AGGATGGCTCCCTGGACTAG 60.105 60.000 0.00 0.00 43.21 2.57
4511 5138 1.133136 GTAGGATGGCTCCCTGGACTA 60.133 57.143 8.22 0.00 43.21 2.59
4512 5139 0.399233 GTAGGATGGCTCCCTGGACT 60.399 60.000 8.22 0.00 43.21 3.85
4513 5140 0.691078 TGTAGGATGGCTCCCTGGAC 60.691 60.000 8.22 1.40 43.21 4.02
4514 5141 0.268869 ATGTAGGATGGCTCCCTGGA 59.731 55.000 8.22 0.00 43.21 3.86
4515 5142 0.399454 CATGTAGGATGGCTCCCTGG 59.601 60.000 8.22 0.00 43.21 4.45
4516 5143 1.135094 ACATGTAGGATGGCTCCCTG 58.865 55.000 0.00 1.57 43.21 4.45
4517 5144 1.492176 CAACATGTAGGATGGCTCCCT 59.508 52.381 0.00 3.89 43.21 4.20
4518 5145 1.972872 CAACATGTAGGATGGCTCCC 58.027 55.000 0.00 0.00 43.21 4.30
4519 5146 1.133976 AGCAACATGTAGGATGGCTCC 60.134 52.381 0.00 0.00 42.43 4.70
4520 5147 2.338577 AGCAACATGTAGGATGGCTC 57.661 50.000 0.00 0.00 0.00 4.70
4521 5148 2.158755 GGTAGCAACATGTAGGATGGCT 60.159 50.000 0.00 4.66 0.00 4.75
4522 5149 2.222027 GGTAGCAACATGTAGGATGGC 58.778 52.381 0.00 0.00 0.00 4.40
4523 5150 3.558931 TGGTAGCAACATGTAGGATGG 57.441 47.619 0.00 0.00 0.00 3.51
4524 5151 4.512944 GTCATGGTAGCAACATGTAGGATG 59.487 45.833 0.00 0.00 44.57 3.51
4525 5152 4.164030 TGTCATGGTAGCAACATGTAGGAT 59.836 41.667 0.00 0.00 44.57 3.24
4526 5153 3.517500 TGTCATGGTAGCAACATGTAGGA 59.482 43.478 0.00 0.00 44.57 2.94
4527 5154 3.623060 GTGTCATGGTAGCAACATGTAGG 59.377 47.826 0.00 0.00 44.57 3.18
4528 5155 3.623060 GGTGTCATGGTAGCAACATGTAG 59.377 47.826 0.00 0.00 44.57 2.74
4529 5156 3.605634 GGTGTCATGGTAGCAACATGTA 58.394 45.455 0.00 3.31 44.57 2.29
4530 5157 2.436417 GGTGTCATGGTAGCAACATGT 58.564 47.619 12.06 0.00 44.57 3.21
4531 5158 1.745087 GGGTGTCATGGTAGCAACATG 59.255 52.381 0.00 7.59 45.39 3.21
4532 5159 1.340991 GGGGTGTCATGGTAGCAACAT 60.341 52.381 0.00 0.00 0.00 2.71
4533 5160 0.037590 GGGGTGTCATGGTAGCAACA 59.962 55.000 0.00 0.00 0.00 3.33
4534 5161 0.037590 TGGGGTGTCATGGTAGCAAC 59.962 55.000 0.00 0.00 0.00 4.17
4535 5162 0.327924 CTGGGGTGTCATGGTAGCAA 59.672 55.000 0.00 0.00 0.00 3.91
4536 5163 1.990424 CTGGGGTGTCATGGTAGCA 59.010 57.895 0.00 0.00 0.00 3.49
4537 5164 1.452108 GCTGGGGTGTCATGGTAGC 60.452 63.158 0.00 0.00 0.00 3.58
4538 5165 0.327924 TTGCTGGGGTGTCATGGTAG 59.672 55.000 0.00 0.00 0.00 3.18
4539 5166 0.037590 GTTGCTGGGGTGTCATGGTA 59.962 55.000 0.00 0.00 0.00 3.25
4540 5167 1.228552 GTTGCTGGGGTGTCATGGT 60.229 57.895 0.00 0.00 0.00 3.55
4541 5168 1.228521 TGTTGCTGGGGTGTCATGG 60.229 57.895 0.00 0.00 0.00 3.66
4542 5169 1.246056 CCTGTTGCTGGGGTGTCATG 61.246 60.000 0.00 0.00 0.00 3.07
4543 5170 1.075482 CCTGTTGCTGGGGTGTCAT 59.925 57.895 0.00 0.00 0.00 3.06
4544 5171 2.382770 ACCTGTTGCTGGGGTGTCA 61.383 57.895 0.00 0.00 31.48 3.58
4545 5172 1.898574 CACCTGTTGCTGGGGTGTC 60.899 63.158 0.00 0.00 43.72 3.67
4546 5173 2.195683 CACCTGTTGCTGGGGTGT 59.804 61.111 0.00 0.00 43.72 4.16
4548 5175 1.719063 ATGACACCTGTTGCTGGGGT 61.719 55.000 0.00 0.00 41.75 4.95
4549 5176 1.075482 ATGACACCTGTTGCTGGGG 59.925 57.895 0.00 0.00 31.91 4.96
4550 5177 1.870055 GCATGACACCTGTTGCTGGG 61.870 60.000 0.00 0.00 31.14 4.45
4551 5178 1.174078 TGCATGACACCTGTTGCTGG 61.174 55.000 0.00 0.00 34.01 4.85
4552 5179 0.669619 TTGCATGACACCTGTTGCTG 59.330 50.000 0.00 0.00 34.01 4.41
4553 5180 1.401761 TTTGCATGACACCTGTTGCT 58.598 45.000 0.00 0.00 34.01 3.91
4554 5181 2.222007 TTTTGCATGACACCTGTTGC 57.778 45.000 0.00 0.00 33.61 4.17
4592 5219 9.454859 AACACAAAATAACCCAAATCTGAAAAA 57.545 25.926 0.00 0.00 0.00 1.94
4593 5220 8.887717 CAACACAAAATAACCCAAATCTGAAAA 58.112 29.630 0.00 0.00 0.00 2.29
4594 5221 8.260818 TCAACACAAAATAACCCAAATCTGAAA 58.739 29.630 0.00 0.00 0.00 2.69
4595 5222 7.786030 TCAACACAAAATAACCCAAATCTGAA 58.214 30.769 0.00 0.00 0.00 3.02
4596 5223 7.353414 TCAACACAAAATAACCCAAATCTGA 57.647 32.000 0.00 0.00 0.00 3.27
4597 5224 7.710475 ACTTCAACACAAAATAACCCAAATCTG 59.290 33.333 0.00 0.00 0.00 2.90
4598 5225 7.791029 ACTTCAACACAAAATAACCCAAATCT 58.209 30.769 0.00 0.00 0.00 2.40
4599 5226 8.432110 AACTTCAACACAAAATAACCCAAATC 57.568 30.769 0.00 0.00 0.00 2.17
4600 5227 8.800370 AAACTTCAACACAAAATAACCCAAAT 57.200 26.923 0.00 0.00 0.00 2.32
4601 5228 8.622948 AAAACTTCAACACAAAATAACCCAAA 57.377 26.923 0.00 0.00 0.00 3.28
4602 5229 9.152595 GTAAAACTTCAACACAAAATAACCCAA 57.847 29.630 0.00 0.00 0.00 4.12
4603 5230 8.311836 TGTAAAACTTCAACACAAAATAACCCA 58.688 29.630 0.00 0.00 0.00 4.51
4604 5231 8.705048 TGTAAAACTTCAACACAAAATAACCC 57.295 30.769 0.00 0.00 0.00 4.11
4608 5235 9.372369 CCCTTTGTAAAACTTCAACACAAAATA 57.628 29.630 0.00 0.00 38.30 1.40
4609 5236 7.335673 CCCCTTTGTAAAACTTCAACACAAAAT 59.664 33.333 0.00 0.00 38.30 1.82
4610 5237 6.651225 CCCCTTTGTAAAACTTCAACACAAAA 59.349 34.615 0.00 0.00 38.30 2.44
4611 5238 6.166982 CCCCTTTGTAAAACTTCAACACAAA 58.833 36.000 0.00 0.00 36.91 2.83
4612 5239 5.725362 CCCCTTTGTAAAACTTCAACACAA 58.275 37.500 0.00 0.00 0.00 3.33
4613 5240 4.382147 GCCCCTTTGTAAAACTTCAACACA 60.382 41.667 0.00 0.00 0.00 3.72
4614 5241 4.116961 GCCCCTTTGTAAAACTTCAACAC 58.883 43.478 0.00 0.00 0.00 3.32
4615 5242 4.027437 AGCCCCTTTGTAAAACTTCAACA 58.973 39.130 0.00 0.00 0.00 3.33
4616 5243 4.665833 AGCCCCTTTGTAAAACTTCAAC 57.334 40.909 0.00 0.00 0.00 3.18
4617 5244 5.451354 ACTAGCCCCTTTGTAAAACTTCAA 58.549 37.500 0.00 0.00 0.00 2.69
4618 5245 5.056553 ACTAGCCCCTTTGTAAAACTTCA 57.943 39.130 0.00 0.00 0.00 3.02
4619 5246 6.401047 AAACTAGCCCCTTTGTAAAACTTC 57.599 37.500 0.00 0.00 0.00 3.01
4620 5247 5.009310 CGAAACTAGCCCCTTTGTAAAACTT 59.991 40.000 0.00 0.00 0.00 2.66
4621 5248 4.517832 CGAAACTAGCCCCTTTGTAAAACT 59.482 41.667 0.00 0.00 0.00 2.66
4622 5249 4.276678 ACGAAACTAGCCCCTTTGTAAAAC 59.723 41.667 0.00 0.00 0.00 2.43
4623 5250 4.463070 ACGAAACTAGCCCCTTTGTAAAA 58.537 39.130 0.00 0.00 0.00 1.52
4624 5251 4.067192 GACGAAACTAGCCCCTTTGTAAA 58.933 43.478 0.00 0.00 0.00 2.01
4625 5252 3.557686 GGACGAAACTAGCCCCTTTGTAA 60.558 47.826 0.00 0.00 0.00 2.41
4626 5253 2.027837 GGACGAAACTAGCCCCTTTGTA 60.028 50.000 0.00 0.00 0.00 2.41
4627 5254 1.271217 GGACGAAACTAGCCCCTTTGT 60.271 52.381 0.00 0.00 0.00 2.83
4628 5255 1.271163 TGGACGAAACTAGCCCCTTTG 60.271 52.381 0.00 0.00 0.00 2.77
4629 5256 1.061546 TGGACGAAACTAGCCCCTTT 58.938 50.000 0.00 0.00 0.00 3.11
4630 5257 1.286248 ATGGACGAAACTAGCCCCTT 58.714 50.000 0.00 0.00 0.00 3.95
4631 5258 1.286248 AATGGACGAAACTAGCCCCT 58.714 50.000 0.00 0.00 0.00 4.79
4632 5259 2.124277 AAATGGACGAAACTAGCCCC 57.876 50.000 0.00 0.00 0.00 5.80
4633 5260 3.078837 TGAAAATGGACGAAACTAGCCC 58.921 45.455 0.00 0.00 0.00 5.19
4634 5261 3.751698 AGTGAAAATGGACGAAACTAGCC 59.248 43.478 0.00 0.00 0.00 3.93
4635 5262 5.638234 AGTAGTGAAAATGGACGAAACTAGC 59.362 40.000 0.00 0.00 0.00 3.42
4636 5263 6.401153 GCAGTAGTGAAAATGGACGAAACTAG 60.401 42.308 0.42 0.00 0.00 2.57
4637 5264 5.407387 GCAGTAGTGAAAATGGACGAAACTA 59.593 40.000 0.42 0.00 0.00 2.24
4638 5265 4.213482 GCAGTAGTGAAAATGGACGAAACT 59.787 41.667 0.42 0.00 0.00 2.66
4639 5266 4.464112 GCAGTAGTGAAAATGGACGAAAC 58.536 43.478 0.42 0.00 0.00 2.78
4640 5267 3.500680 GGCAGTAGTGAAAATGGACGAAA 59.499 43.478 0.42 0.00 0.00 3.46
4641 5268 3.071479 GGCAGTAGTGAAAATGGACGAA 58.929 45.455 0.42 0.00 0.00 3.85
4642 5269 2.695359 GGCAGTAGTGAAAATGGACGA 58.305 47.619 0.42 0.00 0.00 4.20
4643 5270 1.393539 CGGCAGTAGTGAAAATGGACG 59.606 52.381 0.42 0.00 0.00 4.79
4644 5271 1.130561 GCGGCAGTAGTGAAAATGGAC 59.869 52.381 0.42 0.00 0.00 4.02
4645 5272 1.003118 AGCGGCAGTAGTGAAAATGGA 59.997 47.619 1.45 0.00 0.00 3.41
4646 5273 1.131126 CAGCGGCAGTAGTGAAAATGG 59.869 52.381 1.45 0.00 0.00 3.16
4647 5274 1.131126 CCAGCGGCAGTAGTGAAAATG 59.869 52.381 1.45 0.00 0.00 2.32
4648 5275 1.453155 CCAGCGGCAGTAGTGAAAAT 58.547 50.000 1.45 0.00 0.00 1.82
4649 5276 2.927004 CCAGCGGCAGTAGTGAAAA 58.073 52.632 1.45 0.00 0.00 2.29
4650 5277 4.693532 CCAGCGGCAGTAGTGAAA 57.306 55.556 1.45 0.00 0.00 2.69
4661 5288 2.802667 CGATCACGAAAGCCAGCGG 61.803 63.158 0.00 0.00 42.66 5.52
4662 5289 1.805539 TCGATCACGAAAGCCAGCG 60.806 57.895 0.00 0.00 45.74 5.18
4663 5290 4.185413 TCGATCACGAAAGCCAGC 57.815 55.556 0.00 0.00 45.74 4.85
4672 5299 1.346197 GTGCAGTGCATCGATCACG 59.654 57.895 22.87 13.92 41.91 4.35
4673 5300 1.346197 CGTGCAGTGCATCGATCAC 59.654 57.895 22.87 15.77 41.91 3.06
4674 5301 2.455291 GCGTGCAGTGCATCGATCA 61.455 57.895 30.73 4.82 41.91 2.92
4675 5302 2.322422 GCGTGCAGTGCATCGATC 59.678 61.111 30.73 15.82 41.91 3.69
4676 5303 3.557479 CGCGTGCAGTGCATCGAT 61.557 61.111 30.73 0.00 41.91 3.59
4678 5305 4.489795 GACGCGTGCAGTGCATCG 62.490 66.667 28.98 28.98 41.91 3.84
4679 5306 2.244436 ATTGACGCGTGCAGTGCATC 62.244 55.000 22.87 15.09 41.91 3.91
4680 5307 2.244436 GATTGACGCGTGCAGTGCAT 62.244 55.000 22.87 4.55 41.91 3.96
4681 5308 2.953605 GATTGACGCGTGCAGTGCA 61.954 57.895 20.70 15.37 35.60 4.57
4682 5309 2.202222 GATTGACGCGTGCAGTGC 60.202 61.111 20.70 8.58 0.00 4.40
4683 5310 2.476051 GGATTGACGCGTGCAGTG 59.524 61.111 20.70 0.00 0.00 3.66
4684 5311 3.112075 CGGATTGACGCGTGCAGT 61.112 61.111 20.70 11.59 0.00 4.40
4685 5312 3.853330 CCGGATTGACGCGTGCAG 61.853 66.667 20.70 3.70 0.00 4.41
4691 5318 1.828331 GATAACGCCCGGATTGACGC 61.828 60.000 0.73 0.00 0.00 5.19
4692 5319 1.219522 GGATAACGCCCGGATTGACG 61.220 60.000 0.73 0.51 0.00 4.35
4693 5320 0.179067 TGGATAACGCCCGGATTGAC 60.179 55.000 0.73 0.00 0.00 3.18
4694 5321 0.542333 TTGGATAACGCCCGGATTGA 59.458 50.000 0.73 0.00 0.00 2.57
4695 5322 0.661020 GTTGGATAACGCCCGGATTG 59.339 55.000 0.73 0.00 0.00 2.67
4696 5323 0.253610 TGTTGGATAACGCCCGGATT 59.746 50.000 0.73 0.00 39.71 3.01
4697 5324 0.179056 CTGTTGGATAACGCCCGGAT 60.179 55.000 0.73 0.00 39.71 4.18
4698 5325 1.219664 CTGTTGGATAACGCCCGGA 59.780 57.895 0.73 0.00 39.71 5.14
4699 5326 2.469516 GCTGTTGGATAACGCCCGG 61.470 63.158 0.00 0.00 39.71 5.73
4700 5327 2.469516 GGCTGTTGGATAACGCCCG 61.470 63.158 11.98 0.00 43.88 6.13
4701 5328 2.469516 CGGCTGTTGGATAACGCCC 61.470 63.158 15.15 5.25 45.32 6.13
4702 5329 0.814010 ATCGGCTGTTGGATAACGCC 60.814 55.000 12.62 12.62 45.00 5.68
4703 5330 0.304705 CATCGGCTGTTGGATAACGC 59.695 55.000 0.00 0.00 39.71 4.84
4704 5331 0.937304 CCATCGGCTGTTGGATAACG 59.063 55.000 16.50 0.00 39.71 3.18
4705 5332 2.325583 TCCATCGGCTGTTGGATAAC 57.674 50.000 19.53 0.00 38.72 1.89
4709 5336 1.224315 CCATCCATCGGCTGTTGGA 59.776 57.895 24.32 24.32 45.61 3.53
4710 5337 0.394216 TTCCATCCATCGGCTGTTGG 60.394 55.000 15.51 15.51 36.46 3.77
4711 5338 1.133025 GTTTCCATCCATCGGCTGTTG 59.867 52.381 0.00 0.00 0.00 3.33
4712 5339 1.463674 GTTTCCATCCATCGGCTGTT 58.536 50.000 0.00 0.00 0.00 3.16
4713 5340 0.394352 GGTTTCCATCCATCGGCTGT 60.394 55.000 0.00 0.00 0.00 4.40
4714 5341 0.394216 TGGTTTCCATCCATCGGCTG 60.394 55.000 0.00 0.00 0.00 4.85
4715 5342 0.394352 GTGGTTTCCATCCATCGGCT 60.394 55.000 0.00 0.00 35.28 5.52
4716 5343 0.394352 AGTGGTTTCCATCCATCGGC 60.394 55.000 0.00 0.00 35.28 5.54
4717 5344 1.382522 CAGTGGTTTCCATCCATCGG 58.617 55.000 0.00 0.00 35.28 4.18
4718 5345 0.734889 GCAGTGGTTTCCATCCATCG 59.265 55.000 0.00 0.00 35.28 3.84
4719 5346 0.734889 CGCAGTGGTTTCCATCCATC 59.265 55.000 0.00 0.00 35.28 3.51
4720 5347 0.327924 TCGCAGTGGTTTCCATCCAT 59.672 50.000 0.00 0.00 35.28 3.41
4721 5348 0.327924 ATCGCAGTGGTTTCCATCCA 59.672 50.000 0.00 0.00 35.28 3.41
4722 5349 1.463674 AATCGCAGTGGTTTCCATCC 58.536 50.000 0.00 0.00 35.28 3.51
4723 5350 3.689649 ACTTAATCGCAGTGGTTTCCATC 59.310 43.478 0.00 0.00 35.28 3.51
4724 5351 3.686016 ACTTAATCGCAGTGGTTTCCAT 58.314 40.909 0.00 0.00 35.28 3.41
4725 5352 3.071479 GACTTAATCGCAGTGGTTTCCA 58.929 45.455 0.00 0.00 0.00 3.53
4726 5353 3.071479 TGACTTAATCGCAGTGGTTTCC 58.929 45.455 0.00 0.00 0.00 3.13
4727 5354 4.712763 CTTGACTTAATCGCAGTGGTTTC 58.287 43.478 0.00 0.00 0.00 2.78
4728 5355 3.058224 GCTTGACTTAATCGCAGTGGTTT 60.058 43.478 0.00 0.00 0.00 3.27
4729 5356 2.484264 GCTTGACTTAATCGCAGTGGTT 59.516 45.455 0.00 0.00 0.00 3.67
4730 5357 2.076863 GCTTGACTTAATCGCAGTGGT 58.923 47.619 0.00 0.00 0.00 4.16
4731 5358 2.076100 TGCTTGACTTAATCGCAGTGG 58.924 47.619 0.00 0.00 0.00 4.00
4732 5359 2.995939 TCTGCTTGACTTAATCGCAGTG 59.004 45.455 9.09 0.00 46.00 3.66
4733 5360 3.319137 TCTGCTTGACTTAATCGCAGT 57.681 42.857 9.09 0.00 46.00 4.40
4734 5361 3.002042 CCATCTGCTTGACTTAATCGCAG 59.998 47.826 0.00 0.00 46.94 5.18
4735 5362 2.938451 CCATCTGCTTGACTTAATCGCA 59.062 45.455 0.00 0.00 0.00 5.10
4736 5363 3.001736 GTCCATCTGCTTGACTTAATCGC 59.998 47.826 0.00 0.00 0.00 4.58
4737 5364 3.243877 CGTCCATCTGCTTGACTTAATCG 59.756 47.826 0.00 0.00 0.00 3.34
4738 5365 3.001736 GCGTCCATCTGCTTGACTTAATC 59.998 47.826 0.00 0.00 0.00 1.75
4739 5366 2.939103 GCGTCCATCTGCTTGACTTAAT 59.061 45.455 0.00 0.00 0.00 1.40
4740 5367 2.289382 TGCGTCCATCTGCTTGACTTAA 60.289 45.455 0.00 0.00 0.00 1.85
4741 5368 1.275010 TGCGTCCATCTGCTTGACTTA 59.725 47.619 0.00 0.00 0.00 2.24
4742 5369 0.035317 TGCGTCCATCTGCTTGACTT 59.965 50.000 0.00 0.00 0.00 3.01
4743 5370 0.251354 ATGCGTCCATCTGCTTGACT 59.749 50.000 0.00 0.00 0.00 3.41
4744 5371 1.089920 AATGCGTCCATCTGCTTGAC 58.910 50.000 0.00 0.00 0.00 3.18
4745 5372 1.825090 AAATGCGTCCATCTGCTTGA 58.175 45.000 0.00 0.00 0.00 3.02
4746 5373 2.523015 GAAAATGCGTCCATCTGCTTG 58.477 47.619 0.00 0.00 0.00 4.01
4747 5374 1.474077 GGAAAATGCGTCCATCTGCTT 59.526 47.619 0.00 0.00 35.05 3.91
4748 5375 1.098050 GGAAAATGCGTCCATCTGCT 58.902 50.000 0.00 0.00 35.05 4.24
4749 5376 1.098050 AGGAAAATGCGTCCATCTGC 58.902 50.000 0.00 0.00 37.65 4.26
4750 5377 2.874701 CCTAGGAAAATGCGTCCATCTG 59.125 50.000 1.05 0.00 37.65 2.90
4751 5378 2.746472 GCCTAGGAAAATGCGTCCATCT 60.746 50.000 14.75 0.00 37.65 2.90
4752 5379 1.604278 GCCTAGGAAAATGCGTCCATC 59.396 52.381 14.75 0.00 37.65 3.51
4753 5380 1.680338 GCCTAGGAAAATGCGTCCAT 58.320 50.000 14.75 0.00 37.65 3.41
4754 5381 0.742990 CGCCTAGGAAAATGCGTCCA 60.743 55.000 14.75 0.00 41.95 4.02
4755 5382 0.461339 TCGCCTAGGAAAATGCGTCC 60.461 55.000 14.75 0.00 46.57 4.79
4756 5383 0.931005 CTCGCCTAGGAAAATGCGTC 59.069 55.000 14.75 0.00 46.57 5.19
4757 5384 3.065575 CTCGCCTAGGAAAATGCGT 57.934 52.632 14.75 0.00 46.57 5.24
4767 5394 4.043037 ACGTATTTTCTTCCTCGCCTAG 57.957 45.455 0.00 0.00 0.00 3.02
4768 5395 4.883585 TCTACGTATTTTCTTCCTCGCCTA 59.116 41.667 0.00 0.00 0.00 3.93
4769 5396 3.698040 TCTACGTATTTTCTTCCTCGCCT 59.302 43.478 0.00 0.00 0.00 5.52
4770 5397 4.037858 TCTACGTATTTTCTTCCTCGCC 57.962 45.455 0.00 0.00 0.00 5.54
4771 5398 4.918037 TCTCTACGTATTTTCTTCCTCGC 58.082 43.478 0.00 0.00 0.00 5.03
4772 5399 5.972382 CCTTCTCTACGTATTTTCTTCCTCG 59.028 44.000 0.00 0.00 0.00 4.63
4773 5400 7.098074 TCCTTCTCTACGTATTTTCTTCCTC 57.902 40.000 0.00 0.00 0.00 3.71
4774 5401 7.178805 AGTTCCTTCTCTACGTATTTTCTTCCT 59.821 37.037 0.00 0.00 0.00 3.36
4775 5402 7.321908 AGTTCCTTCTCTACGTATTTTCTTCC 58.678 38.462 0.00 0.00 0.00 3.46
4776 5403 8.760103 AAGTTCCTTCTCTACGTATTTTCTTC 57.240 34.615 0.00 0.00 0.00 2.87
4777 5404 8.365647 TGAAGTTCCTTCTCTACGTATTTTCTT 58.634 33.333 0.00 0.00 40.73 2.52
4778 5405 7.893658 TGAAGTTCCTTCTCTACGTATTTTCT 58.106 34.615 0.00 0.00 40.73 2.52
4779 5406 7.201453 GCTGAAGTTCCTTCTCTACGTATTTTC 60.201 40.741 0.00 0.00 40.73 2.29
4780 5407 6.590677 GCTGAAGTTCCTTCTCTACGTATTTT 59.409 38.462 0.00 0.00 40.73 1.82
4781 5408 6.071278 AGCTGAAGTTCCTTCTCTACGTATTT 60.071 38.462 0.00 0.00 40.73 1.40
4782 5409 5.419471 AGCTGAAGTTCCTTCTCTACGTATT 59.581 40.000 0.00 0.00 40.73 1.89
4783 5410 4.951094 AGCTGAAGTTCCTTCTCTACGTAT 59.049 41.667 0.00 0.00 40.73 3.06
4784 5411 4.333690 AGCTGAAGTTCCTTCTCTACGTA 58.666 43.478 0.00 0.00 40.73 3.57
4785 5412 3.158676 AGCTGAAGTTCCTTCTCTACGT 58.841 45.455 0.00 0.00 40.73 3.57
4786 5413 3.729462 CGAGCTGAAGTTCCTTCTCTACG 60.729 52.174 0.00 3.70 40.73 3.51
4787 5414 3.765026 CGAGCTGAAGTTCCTTCTCTAC 58.235 50.000 0.00 0.00 40.73 2.59
4788 5415 2.164624 GCGAGCTGAAGTTCCTTCTCTA 59.835 50.000 0.00 0.00 40.73 2.43
4789 5416 1.067213 GCGAGCTGAAGTTCCTTCTCT 60.067 52.381 0.00 3.15 40.73 3.10
4790 5417 1.355005 GCGAGCTGAAGTTCCTTCTC 58.645 55.000 0.00 3.62 40.73 2.87
4791 5418 0.036858 GGCGAGCTGAAGTTCCTTCT 60.037 55.000 0.00 0.00 40.73 2.85
4792 5419 0.320771 TGGCGAGCTGAAGTTCCTTC 60.321 55.000 0.00 0.00 40.54 3.46
4793 5420 0.321122 CTGGCGAGCTGAAGTTCCTT 60.321 55.000 0.00 0.00 0.00 3.36
4794 5421 1.188219 TCTGGCGAGCTGAAGTTCCT 61.188 55.000 0.00 0.00 0.00 3.36
4795 5422 0.320771 TTCTGGCGAGCTGAAGTTCC 60.321 55.000 0.00 0.00 0.00 3.62
4796 5423 1.195674 GTTTCTGGCGAGCTGAAGTTC 59.804 52.381 0.00 0.00 0.00 3.01
4797 5424 1.230324 GTTTCTGGCGAGCTGAAGTT 58.770 50.000 0.00 0.00 0.00 2.66
4798 5425 0.946221 CGTTTCTGGCGAGCTGAAGT 60.946 55.000 0.00 0.00 0.00 3.01
4799 5426 0.667487 TCGTTTCTGGCGAGCTGAAG 60.667 55.000 0.00 0.00 34.11 3.02
4800 5427 1.365999 TCGTTTCTGGCGAGCTGAA 59.634 52.632 0.00 0.00 34.11 3.02
4801 5428 3.047735 TCGTTTCTGGCGAGCTGA 58.952 55.556 0.00 0.00 34.11 4.26
4806 5433 2.048222 CTGGCTCGTTTCTGGCGA 60.048 61.111 0.00 0.00 36.85 5.54
4807 5434 3.121030 CCTGGCTCGTTTCTGGCG 61.121 66.667 0.00 0.00 0.00 5.69
4808 5435 3.435186 GCCTGGCTCGTTTCTGGC 61.435 66.667 12.43 0.00 39.96 4.85
4809 5436 2.747855 GGCCTGGCTCGTTTCTGG 60.748 66.667 19.68 0.00 0.00 3.86
4810 5437 2.747855 GGGCCTGGCTCGTTTCTG 60.748 66.667 19.68 0.00 0.00 3.02
4811 5438 3.249189 TGGGCCTGGCTCGTTTCT 61.249 61.111 19.68 0.00 0.00 2.52
4812 5439 2.747855 CTGGGCCTGGCTCGTTTC 60.748 66.667 19.68 0.00 0.00 2.78
4813 5440 2.640581 AAACTGGGCCTGGCTCGTTT 62.641 55.000 25.30 25.30 33.59 3.60
4814 5441 3.133365 AAACTGGGCCTGGCTCGTT 62.133 57.895 19.68 19.04 30.17 3.85
4815 5442 3.570212 AAACTGGGCCTGGCTCGT 61.570 61.111 19.68 14.10 0.00 4.18
4816 5443 3.058160 CAAACTGGGCCTGGCTCG 61.058 66.667 19.68 13.42 0.00 5.03
4817 5444 2.677875 CCAAACTGGGCCTGGCTC 60.678 66.667 19.68 16.49 32.67 4.70
4818 5445 2.777960 TTCCAAACTGGGCCTGGCT 61.778 57.895 19.68 0.00 38.32 4.75
4819 5446 2.203625 TTCCAAACTGGGCCTGGC 60.204 61.111 11.05 11.05 38.32 4.85
4820 5447 1.153756 AGTTCCAAACTGGGCCTGG 59.846 57.895 15.36 9.30 41.01 4.45
4821 5448 4.929807 AGTTCCAAACTGGGCCTG 57.070 55.556 9.11 9.11 41.01 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.