Multiple sequence alignment - TraesCS3D01G407500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G407500 chr3D 100.000 5420 0 0 1 5420 520815865 520821284 0.000000e+00 10009.0
1 TraesCS3D01G407500 chr3D 77.808 365 51 20 25 369 562589187 562588833 1.190000e-46 198.0
2 TraesCS3D01G407500 chr3D 90.226 133 11 1 250 382 520810649 520810779 7.220000e-39 172.0
3 TraesCS3D01G407500 chr3D 85.366 123 11 5 5304 5420 477906264 477906143 2.650000e-23 121.0
4 TraesCS3D01G407500 chr3A 94.136 3274 148 21 2125 5377 656125184 656128434 0.000000e+00 4942.0
5 TraesCS3D01G407500 chr3A 85.965 1482 94 54 704 2127 656123482 656124907 0.000000e+00 1480.0
6 TraesCS3D01G407500 chr3A 87.261 314 25 9 1498 1811 309004090 309004388 1.450000e-90 344.0
7 TraesCS3D01G407500 chr3A 82.007 289 14 11 386 653 656122865 656123136 1.530000e-50 211.0
8 TraesCS3D01G407500 chr3B 91.155 3177 186 51 2155 5275 686377700 686380837 0.000000e+00 4222.0
9 TraesCS3D01G407500 chr3B 83.360 1845 133 66 370 2127 686375672 686377429 0.000000e+00 1546.0
10 TraesCS3D01G407500 chr3B 87.179 117 10 2 5304 5420 637088603 637088492 1.580000e-25 128.0
11 TraesCS3D01G407500 chr7A 78.082 365 53 17 25 369 563788031 563788388 7.120000e-49 206.0
12 TraesCS3D01G407500 chr7A 83.146 178 23 4 194 366 640642944 640643119 7.270000e-34 156.0
13 TraesCS3D01G407500 chr4D 75.482 363 61 16 25 366 95772515 95772870 9.400000e-33 152.0
14 TraesCS3D01G407500 chr6D 75.843 356 45 22 25 364 465147437 465147107 5.660000e-30 143.0
15 TraesCS3D01G407500 chr1B 88.793 116 13 0 5300 5415 610173848 610173733 5.660000e-30 143.0
16 TraesCS3D01G407500 chr1A 89.623 106 9 2 5310 5414 542002560 542002664 3.410000e-27 134.0
17 TraesCS3D01G407500 chr1A 88.889 108 11 1 5300 5407 542002672 542002566 1.220000e-26 132.0
18 TraesCS3D01G407500 chr2B 90.196 102 8 2 5304 5403 144610027 144610128 1.220000e-26 132.0
19 TraesCS3D01G407500 chr2B 89.524 105 9 1 5304 5406 144610144 144610040 1.220000e-26 132.0
20 TraesCS3D01G407500 chr5B 87.179 117 9 5 5301 5417 383528339 383528449 1.580000e-25 128.0
21 TraesCS3D01G407500 chr2A 85.366 123 13 3 5298 5415 416922933 416923055 7.370000e-24 122.0
22 TraesCS3D01G407500 chr7B 89.394 66 7 0 5067 5132 177085708 177085773 3.480000e-12 84.2
23 TraesCS3D01G407500 chr5A 82.222 90 11 4 5261 5350 84078561 84078645 7.530000e-09 73.1
24 TraesCS3D01G407500 chr7D 97.143 35 0 1 194 227 627412508 627412474 2.110000e-04 58.4
25 TraesCS3D01G407500 chr4A 100.000 28 0 0 4468 4495 367678190 367678163 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G407500 chr3D 520815865 520821284 5419 False 10009 10009 100.000000 1 5420 1 chr3D.!!$F2 5419
1 TraesCS3D01G407500 chr3A 656122865 656128434 5569 False 2211 4942 87.369333 386 5377 3 chr3A.!!$F2 4991
2 TraesCS3D01G407500 chr3B 686375672 686380837 5165 False 2884 4222 87.257500 370 5275 2 chr3B.!!$F1 4905

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
243 244 0.031585 CTCCGGTTGTTGTCGTCTGA 59.968 55.0 0.00 0.0 0.00 3.27 F
485 486 0.107800 TCGTACTACTGCTCGCTCCT 60.108 55.0 0.00 0.0 0.00 3.69 F
488 489 0.255033 TACTACTGCTCGCTCCTCCA 59.745 55.0 0.00 0.0 0.00 3.86 F
798 1160 0.587737 CAAAACGAAAGCACACGCGA 60.588 50.0 15.93 0.0 45.49 5.87 F
799 1161 0.587985 AAAACGAAAGCACACGCGAC 60.588 50.0 15.93 0.0 45.49 5.19 F
2023 2504 0.608035 TTGGGCTAAGCGACAAAGGG 60.608 55.0 0.00 0.0 0.00 3.95 F
3699 4480 1.317613 TGCACACAGCTTAACCCTTG 58.682 50.0 0.00 0.0 45.94 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2014 2495 0.250295 TCAGGTCTTGCCCTTTGTCG 60.250 55.000 0.00 0.00 38.26 4.35 R
2231 2999 0.389817 CAACCATCCTCAACGCGAGA 60.390 55.000 15.93 9.72 45.45 4.04 R
2243 3011 3.679389 AGTCATGGTGAGAACAACCATC 58.321 45.455 5.12 0.00 41.85 3.51 R
2853 3622 5.858581 CCTAAACAGCTCTAAAAACATGTGC 59.141 40.000 0.00 0.00 0.00 4.57 R
2928 3697 1.349688 ACGGAATGCAAGGGACAGTTA 59.650 47.619 0.00 0.00 0.00 2.24 R
4001 4784 1.217001 TGCAAGTATATTCGCCTGCG 58.783 50.000 4.92 4.92 41.35 5.18 R
4507 5304 0.031111 TCAGGCACACCCTAGGCTAT 60.031 55.000 2.05 0.00 44.09 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.358247 AACTTGGTGCGCGGTAGG 60.358 61.111 8.83 0.00 0.00 3.18
28 29 4.124351 CGGTAGGCGGCGAGTGAA 62.124 66.667 12.98 0.00 0.00 3.18
29 30 2.202756 GGTAGGCGGCGAGTGAAG 60.203 66.667 12.98 0.00 0.00 3.02
30 31 2.572284 GTAGGCGGCGAGTGAAGT 59.428 61.111 12.98 0.00 0.00 3.01
31 32 1.516603 GTAGGCGGCGAGTGAAGTC 60.517 63.158 12.98 0.00 0.00 3.01
32 33 2.707849 TAGGCGGCGAGTGAAGTCC 61.708 63.158 12.98 0.00 0.00 3.85
37 38 4.415332 GCGAGTGAAGTCCGGCGA 62.415 66.667 9.30 0.00 0.00 5.54
38 39 2.504244 CGAGTGAAGTCCGGCGAC 60.504 66.667 9.30 4.76 39.50 5.19
52 53 4.794439 CGACGACGCCATGGCTCA 62.794 66.667 33.07 0.00 39.32 4.26
53 54 3.188786 GACGACGCCATGGCTCAC 61.189 66.667 33.07 21.62 39.32 3.51
59 60 4.819761 GCCATGGCTCACGCGAGA 62.820 66.667 29.98 10.37 42.34 4.04
60 61 2.584418 CCATGGCTCACGCGAGAG 60.584 66.667 26.42 26.42 42.34 3.20
90 91 2.819595 CCTGTCGGCCAATCACGG 60.820 66.667 2.24 0.00 0.00 4.94
91 92 2.264480 CTGTCGGCCAATCACGGA 59.736 61.111 2.24 0.00 0.00 4.69
92 93 2.047655 TGTCGGCCAATCACGGAC 60.048 61.111 2.24 0.00 37.74 4.79
93 94 2.047655 GTCGGCCAATCACGGACA 60.048 61.111 2.24 0.00 37.34 4.02
94 95 1.669760 GTCGGCCAATCACGGACAA 60.670 57.895 2.24 0.00 37.34 3.18
95 96 1.375396 TCGGCCAATCACGGACAAG 60.375 57.895 2.24 0.00 31.05 3.16
96 97 1.375396 CGGCCAATCACGGACAAGA 60.375 57.895 2.24 0.00 31.05 3.02
97 98 0.953471 CGGCCAATCACGGACAAGAA 60.953 55.000 2.24 0.00 31.05 2.52
98 99 0.804989 GGCCAATCACGGACAAGAAG 59.195 55.000 0.00 0.00 32.44 2.85
99 100 1.610624 GGCCAATCACGGACAAGAAGA 60.611 52.381 0.00 0.00 32.44 2.87
100 101 1.734465 GCCAATCACGGACAAGAAGAG 59.266 52.381 0.00 0.00 0.00 2.85
101 102 1.734465 CCAATCACGGACAAGAAGAGC 59.266 52.381 0.00 0.00 0.00 4.09
102 103 1.391485 CAATCACGGACAAGAAGAGCG 59.609 52.381 0.00 0.00 0.00 5.03
103 104 0.888619 ATCACGGACAAGAAGAGCGA 59.111 50.000 0.00 0.00 0.00 4.93
104 105 0.039437 TCACGGACAAGAAGAGCGAC 60.039 55.000 0.00 0.00 0.00 5.19
105 106 1.081376 ACGGACAAGAAGAGCGACG 60.081 57.895 0.00 0.00 0.00 5.12
106 107 1.209383 CGGACAAGAAGAGCGACGA 59.791 57.895 0.00 0.00 0.00 4.20
107 108 0.386858 CGGACAAGAAGAGCGACGAA 60.387 55.000 0.00 0.00 0.00 3.85
108 109 1.732732 CGGACAAGAAGAGCGACGAAT 60.733 52.381 0.00 0.00 0.00 3.34
109 110 1.656095 GGACAAGAAGAGCGACGAATG 59.344 52.381 0.00 0.00 0.00 2.67
110 111 2.596452 GACAAGAAGAGCGACGAATGA 58.404 47.619 0.00 0.00 0.00 2.57
111 112 3.182967 GACAAGAAGAGCGACGAATGAT 58.817 45.455 0.00 0.00 0.00 2.45
112 113 3.589988 ACAAGAAGAGCGACGAATGATT 58.410 40.909 0.00 0.00 0.00 2.57
113 114 3.369147 ACAAGAAGAGCGACGAATGATTG 59.631 43.478 0.00 0.00 0.00 2.67
114 115 2.544685 AGAAGAGCGACGAATGATTGG 58.455 47.619 0.00 0.00 0.00 3.16
115 116 1.594862 GAAGAGCGACGAATGATTGGG 59.405 52.381 0.00 0.00 0.00 4.12
116 117 0.179073 AGAGCGACGAATGATTGGGG 60.179 55.000 0.00 0.00 0.00 4.96
117 118 1.153168 AGCGACGAATGATTGGGGG 60.153 57.895 0.00 0.00 0.00 5.40
118 119 1.153249 GCGACGAATGATTGGGGGA 60.153 57.895 0.00 0.00 0.00 4.81
119 120 1.160329 GCGACGAATGATTGGGGGAG 61.160 60.000 0.00 0.00 0.00 4.30
120 121 0.532862 CGACGAATGATTGGGGGAGG 60.533 60.000 0.00 0.00 0.00 4.30
121 122 0.179018 GACGAATGATTGGGGGAGGG 60.179 60.000 0.00 0.00 0.00 4.30
122 123 1.151450 CGAATGATTGGGGGAGGGG 59.849 63.158 0.00 0.00 0.00 4.79
123 124 1.352622 CGAATGATTGGGGGAGGGGA 61.353 60.000 0.00 0.00 0.00 4.81
124 125 0.480252 GAATGATTGGGGGAGGGGAG 59.520 60.000 0.00 0.00 0.00 4.30
125 126 1.001140 AATGATTGGGGGAGGGGAGG 61.001 60.000 0.00 0.00 0.00 4.30
126 127 2.778717 GATTGGGGGAGGGGAGGG 60.779 72.222 0.00 0.00 0.00 4.30
127 128 3.309509 ATTGGGGGAGGGGAGGGA 61.310 66.667 0.00 0.00 0.00 4.20
128 129 3.369161 ATTGGGGGAGGGGAGGGAG 62.369 68.421 0.00 0.00 0.00 4.30
130 131 4.500826 GGGGGAGGGGAGGGAGAC 62.501 77.778 0.00 0.00 0.00 3.36
131 132 3.695825 GGGGAGGGGAGGGAGACA 61.696 72.222 0.00 0.00 0.00 3.41
132 133 2.454941 GGGAGGGGAGGGAGACAA 59.545 66.667 0.00 0.00 0.00 3.18
133 134 1.229853 GGGAGGGGAGGGAGACAAA 60.230 63.158 0.00 0.00 0.00 2.83
134 135 0.845102 GGGAGGGGAGGGAGACAAAA 60.845 60.000 0.00 0.00 0.00 2.44
135 136 1.299939 GGAGGGGAGGGAGACAAAAT 58.700 55.000 0.00 0.00 0.00 1.82
136 137 2.488836 GGAGGGGAGGGAGACAAAATA 58.511 52.381 0.00 0.00 0.00 1.40
137 138 2.850568 GGAGGGGAGGGAGACAAAATAA 59.149 50.000 0.00 0.00 0.00 1.40
138 139 3.268595 GGAGGGGAGGGAGACAAAATAAA 59.731 47.826 0.00 0.00 0.00 1.40
139 140 4.079154 GGAGGGGAGGGAGACAAAATAAAT 60.079 45.833 0.00 0.00 0.00 1.40
140 141 4.871822 AGGGGAGGGAGACAAAATAAATG 58.128 43.478 0.00 0.00 0.00 2.32
141 142 3.384789 GGGGAGGGAGACAAAATAAATGC 59.615 47.826 0.00 0.00 0.00 3.56
142 143 4.023291 GGGAGGGAGACAAAATAAATGCA 58.977 43.478 0.00 0.00 0.00 3.96
143 144 4.466015 GGGAGGGAGACAAAATAAATGCAA 59.534 41.667 0.00 0.00 0.00 4.08
144 145 5.394553 GGGAGGGAGACAAAATAAATGCAAG 60.395 44.000 0.00 0.00 0.00 4.01
145 146 5.185828 GGAGGGAGACAAAATAAATGCAAGT 59.814 40.000 0.00 0.00 0.00 3.16
146 147 6.029346 AGGGAGACAAAATAAATGCAAGTG 57.971 37.500 0.00 0.00 0.00 3.16
147 148 5.774690 AGGGAGACAAAATAAATGCAAGTGA 59.225 36.000 0.00 0.00 0.00 3.41
148 149 6.267471 AGGGAGACAAAATAAATGCAAGTGAA 59.733 34.615 0.00 0.00 0.00 3.18
149 150 6.928492 GGGAGACAAAATAAATGCAAGTGAAA 59.072 34.615 0.00 0.00 0.00 2.69
150 151 7.440856 GGGAGACAAAATAAATGCAAGTGAAAA 59.559 33.333 0.00 0.00 0.00 2.29
151 152 8.992073 GGAGACAAAATAAATGCAAGTGAAAAT 58.008 29.630 0.00 0.00 0.00 1.82
159 160 6.853279 AAATGCAAGTGAAAATATTCGACG 57.147 33.333 0.00 0.00 38.46 5.12
160 161 4.335082 TGCAAGTGAAAATATTCGACGG 57.665 40.909 0.00 0.00 38.46 4.79
161 162 3.098636 GCAAGTGAAAATATTCGACGGC 58.901 45.455 0.00 0.00 38.46 5.68
162 163 3.425625 GCAAGTGAAAATATTCGACGGCA 60.426 43.478 0.00 0.00 38.46 5.69
163 164 4.717991 CAAGTGAAAATATTCGACGGCAA 58.282 39.130 0.00 0.00 38.46 4.52
164 165 4.336532 AGTGAAAATATTCGACGGCAAC 57.663 40.909 0.00 0.00 38.46 4.17
176 177 3.488090 GGCAACGAGGTGTAGCGC 61.488 66.667 0.00 0.00 0.00 5.92
177 178 3.838795 GCAACGAGGTGTAGCGCG 61.839 66.667 0.00 0.00 0.00 6.86
178 179 3.179265 CAACGAGGTGTAGCGCGG 61.179 66.667 8.83 0.00 0.00 6.46
179 180 4.430765 AACGAGGTGTAGCGCGGG 62.431 66.667 8.83 0.00 0.00 6.13
181 182 4.430765 CGAGGTGTAGCGCGGGTT 62.431 66.667 8.83 0.00 0.00 4.11
182 183 2.813908 GAGGTGTAGCGCGGGTTG 60.814 66.667 8.83 0.00 0.00 3.77
183 184 3.291101 GAGGTGTAGCGCGGGTTGA 62.291 63.158 8.83 0.00 0.00 3.18
184 185 2.125269 GGTGTAGCGCGGGTTGAT 60.125 61.111 8.83 0.00 0.00 2.57
185 186 1.142314 GGTGTAGCGCGGGTTGATA 59.858 57.895 8.83 0.00 0.00 2.15
186 187 0.460635 GGTGTAGCGCGGGTTGATAA 60.461 55.000 8.83 0.00 0.00 1.75
187 188 0.648958 GTGTAGCGCGGGTTGATAAC 59.351 55.000 8.83 0.00 0.00 1.89
188 189 0.533491 TGTAGCGCGGGTTGATAACT 59.467 50.000 8.83 0.00 0.00 2.24
189 190 0.928229 GTAGCGCGGGTTGATAACTG 59.072 55.000 8.83 0.00 0.00 3.16
190 191 0.808453 TAGCGCGGGTTGATAACTGC 60.808 55.000 8.83 0.00 0.00 4.40
191 192 2.106683 GCGCGGGTTGATAACTGCT 61.107 57.895 8.83 0.00 32.94 4.24
192 193 0.808453 GCGCGGGTTGATAACTGCTA 60.808 55.000 8.83 0.00 32.94 3.49
193 194 1.209128 CGCGGGTTGATAACTGCTAG 58.791 55.000 0.00 0.00 32.94 3.42
194 195 1.583054 GCGGGTTGATAACTGCTAGG 58.417 55.000 0.00 0.00 32.57 3.02
195 196 1.810412 GCGGGTTGATAACTGCTAGGG 60.810 57.143 0.00 0.00 32.57 3.53
196 197 1.485066 CGGGTTGATAACTGCTAGGGT 59.515 52.381 0.00 0.00 0.00 4.34
197 198 2.696707 CGGGTTGATAACTGCTAGGGTA 59.303 50.000 0.00 0.00 0.00 3.69
198 199 3.133362 CGGGTTGATAACTGCTAGGGTAA 59.867 47.826 0.00 0.00 0.00 2.85
199 200 4.383335 CGGGTTGATAACTGCTAGGGTAAA 60.383 45.833 0.00 0.00 0.00 2.01
200 201 5.686650 CGGGTTGATAACTGCTAGGGTAAAT 60.687 44.000 0.00 0.00 0.00 1.40
201 202 5.531287 GGGTTGATAACTGCTAGGGTAAATG 59.469 44.000 0.00 0.00 0.00 2.32
202 203 5.008712 GGTTGATAACTGCTAGGGTAAATGC 59.991 44.000 0.00 0.00 0.00 3.56
203 204 5.366482 TGATAACTGCTAGGGTAAATGCA 57.634 39.130 0.00 0.00 0.00 3.96
204 205 5.750524 TGATAACTGCTAGGGTAAATGCAA 58.249 37.500 0.00 0.00 34.90 4.08
205 206 6.184068 TGATAACTGCTAGGGTAAATGCAAA 58.816 36.000 0.00 0.00 34.90 3.68
206 207 6.661377 TGATAACTGCTAGGGTAAATGCAAAA 59.339 34.615 0.00 0.00 34.90 2.44
207 208 5.799827 AACTGCTAGGGTAAATGCAAAAA 57.200 34.783 0.00 0.00 34.90 1.94
208 209 5.391312 ACTGCTAGGGTAAATGCAAAAAG 57.609 39.130 0.00 0.00 34.90 2.27
209 210 4.832823 ACTGCTAGGGTAAATGCAAAAAGT 59.167 37.500 0.00 0.00 34.90 2.66
210 211 5.132897 TGCTAGGGTAAATGCAAAAAGTG 57.867 39.130 0.00 0.00 32.12 3.16
218 219 3.397317 GCAAAAAGTGCGGCGCTG 61.397 61.111 33.26 21.83 45.10 5.18
219 220 2.331098 CAAAAAGTGCGGCGCTGA 59.669 55.556 33.26 11.23 0.00 4.26
220 221 2.010817 CAAAAAGTGCGGCGCTGAC 61.011 57.895 33.26 23.21 0.00 3.51
221 222 3.194272 AAAAAGTGCGGCGCTGACC 62.194 57.895 33.26 17.29 0.00 4.02
238 239 3.411351 CGGCTCCGGTTGTTGTCG 61.411 66.667 0.00 0.00 35.56 4.35
239 240 2.280592 GGCTCCGGTTGTTGTCGT 60.281 61.111 0.00 0.00 0.00 4.34
240 241 2.315386 GGCTCCGGTTGTTGTCGTC 61.315 63.158 0.00 0.00 0.00 4.20
241 242 1.300697 GCTCCGGTTGTTGTCGTCT 60.301 57.895 0.00 0.00 0.00 4.18
242 243 1.557443 GCTCCGGTTGTTGTCGTCTG 61.557 60.000 0.00 0.00 0.00 3.51
243 244 0.031585 CTCCGGTTGTTGTCGTCTGA 59.968 55.000 0.00 0.00 0.00 3.27
244 245 0.677288 TCCGGTTGTTGTCGTCTGAT 59.323 50.000 0.00 0.00 0.00 2.90
245 246 1.069513 TCCGGTTGTTGTCGTCTGATT 59.930 47.619 0.00 0.00 0.00 2.57
246 247 1.194547 CCGGTTGTTGTCGTCTGATTG 59.805 52.381 0.00 0.00 0.00 2.67
247 248 1.194547 CGGTTGTTGTCGTCTGATTGG 59.805 52.381 0.00 0.00 0.00 3.16
248 249 1.069227 GGTTGTTGTCGTCTGATTGGC 60.069 52.381 0.00 0.00 0.00 4.52
249 250 1.873591 GTTGTTGTCGTCTGATTGGCT 59.126 47.619 0.00 0.00 0.00 4.75
250 251 1.511850 TGTTGTCGTCTGATTGGCTG 58.488 50.000 0.00 0.00 0.00 4.85
251 252 1.069978 TGTTGTCGTCTGATTGGCTGA 59.930 47.619 0.00 0.00 0.00 4.26
252 253 1.728971 GTTGTCGTCTGATTGGCTGAG 59.271 52.381 0.00 0.00 0.00 3.35
253 254 0.247460 TGTCGTCTGATTGGCTGAGG 59.753 55.000 0.00 0.00 0.00 3.86
254 255 0.532573 GTCGTCTGATTGGCTGAGGA 59.467 55.000 0.00 0.00 37.13 3.71
255 256 0.532573 TCGTCTGATTGGCTGAGGAC 59.467 55.000 0.00 0.00 35.38 3.85
256 257 0.460987 CGTCTGATTGGCTGAGGACC 60.461 60.000 0.00 0.00 33.71 4.46
257 258 0.615331 GTCTGATTGGCTGAGGACCA 59.385 55.000 0.00 0.00 34.65 4.02
263 264 2.205022 TTGGCTGAGGACCAAATCTG 57.795 50.000 0.00 0.00 44.11 2.90
264 265 0.322816 TGGCTGAGGACCAAATCTGC 60.323 55.000 0.00 0.00 39.03 4.26
265 266 0.322816 GGCTGAGGACCAAATCTGCA 60.323 55.000 11.54 0.00 40.84 4.41
266 267 0.807496 GCTGAGGACCAAATCTGCAC 59.193 55.000 0.00 0.00 39.41 4.57
267 268 1.883638 GCTGAGGACCAAATCTGCACA 60.884 52.381 0.00 0.00 39.41 4.57
268 269 2.719739 CTGAGGACCAAATCTGCACAT 58.280 47.619 0.00 0.00 0.00 3.21
269 270 3.877559 CTGAGGACCAAATCTGCACATA 58.122 45.455 0.00 0.00 0.00 2.29
270 271 3.875727 CTGAGGACCAAATCTGCACATAG 59.124 47.826 0.00 0.00 0.00 2.23
271 272 3.209410 GAGGACCAAATCTGCACATAGG 58.791 50.000 0.00 0.00 0.00 2.57
272 273 2.092212 AGGACCAAATCTGCACATAGGG 60.092 50.000 0.00 0.00 0.00 3.53
273 274 2.357154 GGACCAAATCTGCACATAGGGT 60.357 50.000 0.00 0.00 0.00 4.34
285 286 3.009723 CACATAGGGTGCAAGTTGTAGG 58.990 50.000 4.48 0.00 41.36 3.18
286 287 2.910319 ACATAGGGTGCAAGTTGTAGGA 59.090 45.455 4.48 0.00 0.00 2.94
287 288 3.523564 ACATAGGGTGCAAGTTGTAGGAT 59.476 43.478 4.48 0.00 0.00 3.24
288 289 2.496899 AGGGTGCAAGTTGTAGGATG 57.503 50.000 4.48 0.00 0.00 3.51
289 290 1.985159 AGGGTGCAAGTTGTAGGATGA 59.015 47.619 4.48 0.00 0.00 2.92
290 291 2.375174 AGGGTGCAAGTTGTAGGATGAA 59.625 45.455 4.48 0.00 0.00 2.57
291 292 3.153919 GGGTGCAAGTTGTAGGATGAAA 58.846 45.455 4.48 0.00 0.00 2.69
292 293 3.763897 GGGTGCAAGTTGTAGGATGAAAT 59.236 43.478 4.48 0.00 0.00 2.17
293 294 4.947388 GGGTGCAAGTTGTAGGATGAAATA 59.053 41.667 4.48 0.00 0.00 1.40
294 295 5.066505 GGGTGCAAGTTGTAGGATGAAATAG 59.933 44.000 4.48 0.00 0.00 1.73
295 296 5.648092 GGTGCAAGTTGTAGGATGAAATAGT 59.352 40.000 4.48 0.00 0.00 2.12
296 297 6.151144 GGTGCAAGTTGTAGGATGAAATAGTT 59.849 38.462 4.48 0.00 0.00 2.24
297 298 7.335924 GGTGCAAGTTGTAGGATGAAATAGTTA 59.664 37.037 4.48 0.00 0.00 2.24
298 299 8.391106 GTGCAAGTTGTAGGATGAAATAGTTAG 58.609 37.037 4.48 0.00 0.00 2.34
299 300 7.065803 TGCAAGTTGTAGGATGAAATAGTTAGC 59.934 37.037 4.48 0.00 0.00 3.09
300 301 7.281100 GCAAGTTGTAGGATGAAATAGTTAGCT 59.719 37.037 4.48 0.00 0.00 3.32
301 302 9.167311 CAAGTTGTAGGATGAAATAGTTAGCTT 57.833 33.333 0.00 0.00 0.00 3.74
302 303 9.740710 AAGTTGTAGGATGAAATAGTTAGCTTT 57.259 29.630 0.00 0.00 0.00 3.51
303 304 9.740710 AGTTGTAGGATGAAATAGTTAGCTTTT 57.259 29.630 0.00 0.00 0.00 2.27
327 328 9.567776 TTTTTAAGTTTCAGGACTACATCATCA 57.432 29.630 0.00 0.00 0.00 3.07
328 329 8.547967 TTTAAGTTTCAGGACTACATCATCAC 57.452 34.615 0.00 0.00 0.00 3.06
329 330 5.745312 AGTTTCAGGACTACATCATCACA 57.255 39.130 0.00 0.00 0.00 3.58
330 331 6.305272 AGTTTCAGGACTACATCATCACAT 57.695 37.500 0.00 0.00 0.00 3.21
331 332 6.344500 AGTTTCAGGACTACATCATCACATC 58.656 40.000 0.00 0.00 0.00 3.06
332 333 4.574599 TCAGGACTACATCATCACATCG 57.425 45.455 0.00 0.00 0.00 3.84
333 334 4.207165 TCAGGACTACATCATCACATCGA 58.793 43.478 0.00 0.00 0.00 3.59
334 335 4.276926 TCAGGACTACATCATCACATCGAG 59.723 45.833 0.00 0.00 0.00 4.04
335 336 3.571828 AGGACTACATCATCACATCGAGG 59.428 47.826 0.00 0.00 0.00 4.63
336 337 3.570125 GGACTACATCATCACATCGAGGA 59.430 47.826 3.06 0.00 39.11 3.71
337 338 4.541779 GACTACATCATCACATCGAGGAC 58.458 47.826 3.06 0.00 37.23 3.85
338 339 3.954258 ACTACATCATCACATCGAGGACA 59.046 43.478 3.06 0.00 37.23 4.02
339 340 3.893326 ACATCATCACATCGAGGACAA 57.107 42.857 3.06 0.00 37.23 3.18
340 341 3.790091 ACATCATCACATCGAGGACAAG 58.210 45.455 3.06 0.00 37.23 3.16
341 342 3.196469 ACATCATCACATCGAGGACAAGT 59.804 43.478 3.06 0.00 37.23 3.16
342 343 3.961480 TCATCACATCGAGGACAAGTT 57.039 42.857 3.06 0.00 27.00 2.66
343 344 3.849911 TCATCACATCGAGGACAAGTTC 58.150 45.455 3.06 0.00 27.00 3.01
344 345 2.347697 TCACATCGAGGACAAGTTCG 57.652 50.000 3.06 0.00 38.13 3.95
348 349 1.472878 CATCGAGGACAAGTTCGAGGA 59.527 52.381 2.82 0.00 46.82 3.71
349 350 1.835494 TCGAGGACAAGTTCGAGGAT 58.165 50.000 0.00 0.00 40.55 3.24
350 351 2.168496 TCGAGGACAAGTTCGAGGATT 58.832 47.619 0.00 0.00 40.55 3.01
351 352 2.163815 TCGAGGACAAGTTCGAGGATTC 59.836 50.000 0.00 0.00 40.55 2.52
352 353 2.735762 CGAGGACAAGTTCGAGGATTCC 60.736 54.545 0.00 0.00 39.06 3.01
353 354 2.498078 GAGGACAAGTTCGAGGATTCCT 59.502 50.000 4.44 4.44 36.03 3.36
354 355 2.234908 AGGACAAGTTCGAGGATTCCTG 59.765 50.000 10.74 2.94 31.76 3.86
355 356 2.233922 GGACAAGTTCGAGGATTCCTGA 59.766 50.000 10.74 5.40 31.76 3.86
356 357 3.118592 GGACAAGTTCGAGGATTCCTGAT 60.119 47.826 10.74 0.00 31.76 2.90
357 358 3.866651 ACAAGTTCGAGGATTCCTGATG 58.133 45.455 10.74 6.37 31.76 3.07
358 359 2.611225 AGTTCGAGGATTCCTGATGC 57.389 50.000 10.74 4.96 31.76 3.91
359 360 2.114616 AGTTCGAGGATTCCTGATGCT 58.885 47.619 10.74 6.87 39.39 3.79
360 361 3.300388 AGTTCGAGGATTCCTGATGCTA 58.700 45.455 10.74 0.00 36.45 3.49
361 362 3.900601 AGTTCGAGGATTCCTGATGCTAT 59.099 43.478 10.74 0.00 36.45 2.97
362 363 4.346418 AGTTCGAGGATTCCTGATGCTATT 59.654 41.667 10.74 0.00 36.45 1.73
363 364 5.540337 AGTTCGAGGATTCCTGATGCTATTA 59.460 40.000 10.74 0.00 36.45 0.98
364 365 5.392767 TCGAGGATTCCTGATGCTATTAC 57.607 43.478 10.74 0.00 36.45 1.89
365 366 4.220821 TCGAGGATTCCTGATGCTATTACC 59.779 45.833 10.74 0.00 36.45 2.85
366 367 4.621747 CGAGGATTCCTGATGCTATTACCC 60.622 50.000 10.74 0.00 36.45 3.69
367 368 3.589288 AGGATTCCTGATGCTATTACCCC 59.411 47.826 3.86 0.00 34.27 4.95
368 369 3.589288 GGATTCCTGATGCTATTACCCCT 59.411 47.826 0.00 0.00 0.00 4.79
369 370 4.323868 GGATTCCTGATGCTATTACCCCTC 60.324 50.000 0.00 0.00 0.00 4.30
370 371 3.637821 TCCTGATGCTATTACCCCTCT 57.362 47.619 0.00 0.00 0.00 3.69
371 372 3.511477 TCCTGATGCTATTACCCCTCTC 58.489 50.000 0.00 0.00 0.00 3.20
372 373 3.142977 TCCTGATGCTATTACCCCTCTCT 59.857 47.826 0.00 0.00 0.00 3.10
373 374 3.513515 CCTGATGCTATTACCCCTCTCTC 59.486 52.174 0.00 0.00 0.00 3.20
374 375 4.415596 CTGATGCTATTACCCCTCTCTCT 58.584 47.826 0.00 0.00 0.00 3.10
375 376 5.517477 CCTGATGCTATTACCCCTCTCTCTA 60.517 48.000 0.00 0.00 0.00 2.43
376 377 6.159172 TGATGCTATTACCCCTCTCTCTAT 57.841 41.667 0.00 0.00 0.00 1.98
377 378 7.285340 TGATGCTATTACCCCTCTCTCTATA 57.715 40.000 0.00 0.00 0.00 1.31
378 379 7.350382 TGATGCTATTACCCCTCTCTCTATAG 58.650 42.308 0.00 0.00 0.00 1.31
419 420 2.814183 GATGCCGTCCGTCGTTGTCT 62.814 60.000 0.00 0.00 37.94 3.41
483 484 0.316360 GCTCGTACTACTGCTCGCTC 60.316 60.000 0.00 0.00 0.00 5.03
484 485 0.305313 CTCGTACTACTGCTCGCTCC 59.695 60.000 0.00 0.00 0.00 4.70
485 486 0.107800 TCGTACTACTGCTCGCTCCT 60.108 55.000 0.00 0.00 0.00 3.69
486 487 0.305313 CGTACTACTGCTCGCTCCTC 59.695 60.000 0.00 0.00 0.00 3.71
487 488 0.664224 GTACTACTGCTCGCTCCTCC 59.336 60.000 0.00 0.00 0.00 4.30
488 489 0.255033 TACTACTGCTCGCTCCTCCA 59.745 55.000 0.00 0.00 0.00 3.86
489 490 1.316706 ACTACTGCTCGCTCCTCCAC 61.317 60.000 0.00 0.00 0.00 4.02
490 491 2.010582 CTACTGCTCGCTCCTCCACC 62.011 65.000 0.00 0.00 0.00 4.61
491 492 2.500815 TACTGCTCGCTCCTCCACCT 62.501 60.000 0.00 0.00 0.00 4.00
492 493 3.368190 CTGCTCGCTCCTCCACCTG 62.368 68.421 0.00 0.00 0.00 4.00
493 494 4.828925 GCTCGCTCCTCCACCTGC 62.829 72.222 0.00 0.00 0.00 4.85
494 495 3.385384 CTCGCTCCTCCACCTGCA 61.385 66.667 0.00 0.00 0.00 4.41
511 512 1.807886 CACGGGCTCGCTAGTAGTT 59.192 57.895 5.51 0.00 40.63 2.24
540 541 2.165301 GCCGTGCACGACCATACTC 61.165 63.158 39.10 13.53 43.02 2.59
543 573 1.268589 CCGTGCACGACCATACTCTAG 60.269 57.143 39.10 14.70 43.02 2.43
573 603 3.063997 GTGTCTTAATTCATGCCCACTCG 59.936 47.826 0.00 0.00 0.00 4.18
670 1019 7.255277 CCAAAACAAAGAAAAACACAAAAGGGA 60.255 33.333 0.00 0.00 0.00 4.20
681 1030 1.074566 ACAAAAGGGAGAGCCTGGAAG 59.925 52.381 0.00 0.00 0.00 3.46
711 1073 3.436704 CACACACACTCTCTCTCTCTCTC 59.563 52.174 0.00 0.00 0.00 3.20
712 1074 3.327757 ACACACACTCTCTCTCTCTCTCT 59.672 47.826 0.00 0.00 0.00 3.10
713 1075 3.935203 CACACACTCTCTCTCTCTCTCTC 59.065 52.174 0.00 0.00 0.00 3.20
714 1076 3.840666 ACACACTCTCTCTCTCTCTCTCT 59.159 47.826 0.00 0.00 0.00 3.10
715 1077 4.081420 ACACACTCTCTCTCTCTCTCTCTC 60.081 50.000 0.00 0.00 0.00 3.20
716 1078 4.161189 CACACTCTCTCTCTCTCTCTCTCT 59.839 50.000 0.00 0.00 0.00 3.10
798 1160 0.587737 CAAAACGAAAGCACACGCGA 60.588 50.000 15.93 0.00 45.49 5.87
799 1161 0.587985 AAAACGAAAGCACACGCGAC 60.588 50.000 15.93 0.00 45.49 5.19
800 1162 2.674365 AAACGAAAGCACACGCGACG 62.674 55.000 15.93 5.81 45.49 5.12
802 1164 4.719616 GAAAGCACACGCGACGCC 62.720 66.667 15.93 0.00 45.49 5.68
1166 1602 2.234300 TCTTTTGGCGAGTTCGTTCT 57.766 45.000 3.27 0.00 42.22 3.01
1215 1651 1.228154 AGTTCCTCCGGTTTGGTGC 60.228 57.895 0.00 1.08 39.52 5.01
1242 1678 4.323417 TGCTTCTTTCATCGCTTTCCTTA 58.677 39.130 0.00 0.00 0.00 2.69
1318 1760 8.519799 TCCAAAAGAGATGTTTTTACTTGACT 57.480 30.769 0.00 0.00 0.00 3.41
1362 1805 8.331740 TCAGATCCAGAATCCAAATTAGTTCTT 58.668 33.333 0.00 0.00 34.67 2.52
1394 1837 6.996282 CCTCCTTTTTGTTTACTTAGTGGAGA 59.004 38.462 10.06 0.00 39.54 3.71
1402 1853 7.592885 TGTTTACTTAGTGGAGAACAGTACT 57.407 36.000 0.00 0.00 34.78 2.73
1403 1854 8.696043 TGTTTACTTAGTGGAGAACAGTACTA 57.304 34.615 0.00 0.00 34.78 1.82
1404 1855 8.571336 TGTTTACTTAGTGGAGAACAGTACTAC 58.429 37.037 0.00 0.00 34.78 2.73
1405 1856 8.571336 GTTTACTTAGTGGAGAACAGTACTACA 58.429 37.037 0.00 0.00 34.78 2.74
1406 1857 6.821031 ACTTAGTGGAGAACAGTACTACAG 57.179 41.667 0.00 0.00 34.78 2.74
1407 1858 6.305411 ACTTAGTGGAGAACAGTACTACAGT 58.695 40.000 0.00 0.00 34.78 3.55
1408 1859 7.456725 ACTTAGTGGAGAACAGTACTACAGTA 58.543 38.462 0.00 0.00 34.78 2.74
1526 1984 7.402054 TGTTCCATTCAATACAGTTATGGAGT 58.598 34.615 0.00 0.00 43.93 3.85
1538 1996 5.483937 ACAGTTATGGAGTGTACTTGATCCA 59.516 40.000 10.08 10.08 45.48 3.41
1572 2030 4.703897 TGGTGAACAAGTTAGGAAGTCTG 58.296 43.478 0.00 0.00 0.00 3.51
1573 2031 4.163458 TGGTGAACAAGTTAGGAAGTCTGT 59.837 41.667 0.00 0.00 0.00 3.41
1574 2032 5.364446 TGGTGAACAAGTTAGGAAGTCTGTA 59.636 40.000 0.00 0.00 0.00 2.74
1575 2033 5.695363 GGTGAACAAGTTAGGAAGTCTGTAC 59.305 44.000 0.00 0.00 0.00 2.90
1635 2093 2.824341 CACAGGTTAGGAGTAGTTCGGT 59.176 50.000 0.00 0.00 0.00 4.69
1642 2100 2.748388 AGGAGTAGTTCGGTTGGCTAT 58.252 47.619 0.00 0.00 0.00 2.97
1647 2105 5.300286 GGAGTAGTTCGGTTGGCTATACTAA 59.700 44.000 0.00 0.00 0.00 2.24
1649 2107 4.667519 AGTTCGGTTGGCTATACTAAGG 57.332 45.455 0.00 0.00 0.00 2.69
1705 2170 6.320672 CCGTTCCTACTTTTAGGTCTGATCTA 59.679 42.308 0.00 0.00 45.01 1.98
1707 2172 7.701501 CGTTCCTACTTTTAGGTCTGATCTAAC 59.298 40.741 9.84 0.00 45.01 2.34
1710 2175 9.406113 TCCTACTTTTAGGTCTGATCTAACTAC 57.594 37.037 9.84 0.00 45.01 2.73
1720 2185 6.154706 GGTCTGATCTAACTACTCTTTGGGAA 59.845 42.308 0.00 0.00 0.00 3.97
1722 2187 8.261522 GTCTGATCTAACTACTCTTTGGGAATT 58.738 37.037 0.00 0.00 0.00 2.17
1755 2223 5.182950 TCAAAACTGTGTGTTCTGATGTTGT 59.817 36.000 0.00 0.00 38.03 3.32
1757 2225 6.751514 AAACTGTGTGTTCTGATGTTGTTA 57.248 33.333 0.00 0.00 38.03 2.41
1758 2226 6.942532 AACTGTGTGTTCTGATGTTGTTAT 57.057 33.333 0.00 0.00 32.63 1.89
1771 2239 9.126151 TCTGATGTTGTTATTTGTTTTCCACTA 57.874 29.630 0.00 0.00 0.00 2.74
1809 2277 5.680229 GCTCACTGCATTTTCTATTTCGATG 59.320 40.000 0.00 0.00 42.31 3.84
1811 2279 5.066375 TCACTGCATTTTCTATTTCGATGGG 59.934 40.000 0.00 0.00 0.00 4.00
1818 2286 4.417426 TTCTATTTCGATGGGGAACTCC 57.583 45.455 0.00 0.00 0.00 3.85
1922 2390 5.783875 ACTTACTAGTACACATCAAAGGGGT 59.216 40.000 0.91 0.00 31.21 4.95
1939 2407 2.364324 GGGGTTCTTTGGTTCCTTGTTC 59.636 50.000 0.00 0.00 0.00 3.18
1984 2465 4.589908 AGGAACAGTACATGGACCATTTC 58.410 43.478 3.52 5.04 32.81 2.17
1985 2466 4.042809 AGGAACAGTACATGGACCATTTCA 59.957 41.667 3.52 0.00 32.81 2.69
1986 2467 4.396166 GGAACAGTACATGGACCATTTCAG 59.604 45.833 3.52 0.00 0.00 3.02
1987 2468 4.640771 ACAGTACATGGACCATTTCAGT 57.359 40.909 3.52 2.15 0.00 3.41
1988 2469 4.985538 ACAGTACATGGACCATTTCAGTT 58.014 39.130 3.52 0.00 0.00 3.16
1989 2470 5.385198 ACAGTACATGGACCATTTCAGTTT 58.615 37.500 3.52 0.00 0.00 2.66
1990 2471 5.833131 ACAGTACATGGACCATTTCAGTTTT 59.167 36.000 3.52 0.00 0.00 2.43
2004 2485 7.710475 CCATTTCAGTTTTAACCTCAACACAAT 59.290 33.333 0.00 0.00 0.00 2.71
2005 2486 9.097257 CATTTCAGTTTTAACCTCAACACAATT 57.903 29.630 0.00 0.00 0.00 2.32
2011 2492 2.969821 ACCTCAACACAATTGGGCTA 57.030 45.000 7.85 0.00 0.00 3.93
2013 2494 3.157087 ACCTCAACACAATTGGGCTAAG 58.843 45.455 7.85 2.20 0.00 2.18
2014 2495 2.094545 CCTCAACACAATTGGGCTAAGC 60.095 50.000 7.85 0.00 0.00 3.09
2022 2503 1.463674 ATTGGGCTAAGCGACAAAGG 58.536 50.000 0.00 0.00 32.04 3.11
2023 2504 0.608035 TTGGGCTAAGCGACAAAGGG 60.608 55.000 0.00 0.00 0.00 3.95
2053 2534 7.851228 ACCTGATAGTACATTGAGTGATTGAA 58.149 34.615 0.00 0.00 0.00 2.69
2067 2548 9.921637 TTGAGTGATTGAAGTAAAGTTTGTTTT 57.078 25.926 0.00 0.00 0.00 2.43
2107 2588 1.368641 CAGGCGGAATCGAATCACAA 58.631 50.000 2.36 0.00 39.00 3.33
2110 2591 1.466950 GGCGGAATCGAATCACAAACA 59.533 47.619 2.36 0.00 39.00 2.83
2182 2950 5.295431 TCGTTTAGAATTGTGCTGATTGG 57.705 39.130 0.00 0.00 0.00 3.16
2184 2952 5.122239 TCGTTTAGAATTGTGCTGATTGGAG 59.878 40.000 0.00 0.00 0.00 3.86
2201 2969 7.801104 TGATTGGAGCTTATTTACAGGATACA 58.199 34.615 0.00 0.00 41.41 2.29
2231 2999 3.117888 TGAAAGCTCCAAAGAAGTCACCT 60.118 43.478 0.00 0.00 0.00 4.00
2312 3080 2.315925 TGTGTATGAAGCAGCTAGGC 57.684 50.000 0.00 0.00 0.00 3.93
2655 3423 5.482175 TCTTCTCGAAGAAAGAAAGGAGGAT 59.518 40.000 6.89 0.00 43.79 3.24
2928 3697 3.347216 ACGATCTGCTTGCTGGTTAAAT 58.653 40.909 0.00 0.00 0.00 1.40
2994 3763 9.333497 CATTGCACTCATAATATATCGGTTTTG 57.667 33.333 0.00 0.00 0.00 2.44
3037 3806 2.316067 TCCTCTTCTCAGGGAATCAGGA 59.684 50.000 6.74 6.74 39.05 3.86
3086 3857 6.069963 AGCATAGTCTCCCTGAGTAATTTTGT 60.070 38.462 0.00 0.00 34.59 2.83
3087 3858 6.599638 GCATAGTCTCCCTGAGTAATTTTGTT 59.400 38.462 0.00 0.00 34.59 2.83
3176 3953 4.262635 CCATAGTTACCTCGATGGAGCATT 60.263 45.833 7.76 0.00 41.09 3.56
3274 4052 4.511826 GGCAATGCTTATACTGTCCTGTAC 59.488 45.833 4.82 0.00 0.00 2.90
3348 4128 2.455557 ACTCTGGATGAGGTCTGACAG 58.544 52.381 10.38 0.00 46.72 3.51
3529 4309 2.520120 TGGTGTCCATCTAGATCCTCCT 59.480 50.000 1.03 0.00 0.00 3.69
3620 4401 7.937700 TCTCCATGGTATCTAATTTCCTTCT 57.062 36.000 12.58 0.00 0.00 2.85
3699 4480 1.317613 TGCACACAGCTTAACCCTTG 58.682 50.000 0.00 0.00 45.94 3.61
3712 4493 2.029838 ACCCTTGAGCAGAATAAGCG 57.970 50.000 0.00 0.00 37.01 4.68
3732 4513 5.605534 AGCGTTCTTCTGACAATATATGCT 58.394 37.500 0.00 0.00 0.00 3.79
3755 4536 1.542915 CAGGGTCTTGTGGCAAATCAG 59.457 52.381 0.00 0.00 0.00 2.90
3969 4751 5.096443 TCAACTCCCACTTGCAAATTTTT 57.904 34.783 0.00 0.00 0.00 1.94
3997 4780 8.562892 AGTTTGTGAGTGAAGATGTATCTTTTG 58.437 33.333 8.41 0.00 46.47 2.44
4001 4784 8.559536 TGTGAGTGAAGATGTATCTTTTGTTTC 58.440 33.333 8.41 4.43 46.47 2.78
4137 4920 5.228635 CGTCCGTCACATTACATTGTACTAC 59.771 44.000 0.00 0.00 0.00 2.73
4332 5115 2.963548 TACACACGAAACCACTGTCA 57.036 45.000 0.00 0.00 0.00 3.58
4362 5145 7.454260 AATTGAAAACTGGGATGAAGTCTAC 57.546 36.000 0.00 0.00 0.00 2.59
4427 5210 6.700081 GCTGACTACCGAACATGACATTATTA 59.300 38.462 0.00 0.00 0.00 0.98
4461 5244 6.458342 CGTTTCTTGTTTAGATATTGGCTCCC 60.458 42.308 0.00 0.00 31.54 4.30
4483 5277 9.124807 CTCCCGTGTGTTTCTTTTATTTATTTC 57.875 33.333 0.00 0.00 0.00 2.17
4571 5368 4.025401 GGTTTGCACGGTGGCTCG 62.025 66.667 10.60 0.00 34.04 5.03
4621 5418 8.547967 TCCACTAATTGTCTTGTATGTTCTTC 57.452 34.615 0.00 0.00 0.00 2.87
4692 5496 6.798427 TCCACTGCTAATTATGACTTCTCT 57.202 37.500 0.00 0.00 0.00 3.10
4709 5517 4.175787 TCTCTAGTCTTGCCGAGTTTTC 57.824 45.455 0.00 0.00 0.00 2.29
4806 5615 5.837437 ACACTGTTTGTTTCTTTTCACACA 58.163 33.333 0.00 0.00 33.09 3.72
4808 5617 6.586082 ACACTGTTTGTTTCTTTTCACACATC 59.414 34.615 0.00 0.00 33.09 3.06
4927 5745 8.347004 ACATGTGAATACAATTACAATGTGGA 57.653 30.769 0.00 0.00 40.84 4.02
5115 5939 4.788679 ACTAACCTTAAGCAAACTGTGGT 58.211 39.130 0.00 0.00 40.58 4.16
5139 5963 7.923878 GGTTACCATAAAAAGTGTGTTGAACAT 59.076 33.333 0.00 0.00 41.97 2.71
5151 5975 3.687698 GTGTTGAACATAATGGCTACCGT 59.312 43.478 0.00 0.00 0.00 4.83
5172 6001 4.566759 CGTGAGTGTATCTTGTTGTATGGG 59.433 45.833 0.00 0.00 0.00 4.00
5224 6057 9.577110 AGATCATACTTGCATTTTAACATTGTG 57.423 29.630 0.00 0.00 0.00 3.33
5233 6066 7.615403 TGCATTTTAACATTGTGGCCTAATTA 58.385 30.769 3.32 0.00 0.00 1.40
5263 6098 5.009510 TGGACACTATGACCATGTTGTTTTG 59.990 40.000 0.00 0.00 37.28 2.44
5275 6110 3.633235 TGTTGTTTTGACACACACACAC 58.367 40.909 0.00 0.00 0.00 3.82
5276 6111 3.066760 TGTTGTTTTGACACACACACACA 59.933 39.130 0.00 0.00 0.00 3.72
5277 6112 3.275400 TGTTTTGACACACACACACAC 57.725 42.857 0.00 0.00 0.00 3.82
5278 6113 2.618709 TGTTTTGACACACACACACACA 59.381 40.909 0.00 0.00 0.00 3.72
5279 6114 2.977169 GTTTTGACACACACACACACAC 59.023 45.455 0.00 0.00 0.00 3.82
5280 6115 1.884235 TTGACACACACACACACACA 58.116 45.000 0.00 0.00 0.00 3.72
5281 6116 1.152510 TGACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
5282 6117 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
5283 6118 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5295 6130 7.330700 CACACACACACACACAGACAATATATA 59.669 37.037 0.00 0.00 0.00 0.86
5312 6147 9.609346 ACAATATATAAATGTAATACGCCCTCC 57.391 33.333 3.42 0.00 0.00 4.30
5314 6149 1.589803 AAATGTAATACGCCCTCCGC 58.410 50.000 0.00 0.00 41.76 5.54
5317 6152 3.236233 TAATACGCCCTCCGCCCC 61.236 66.667 0.00 0.00 41.76 5.80
5340 6175 7.201617 CCCCGAATTACTTGTCTTAGATTTGTC 60.202 40.741 0.00 0.00 0.00 3.18
5359 6194 8.813643 ATTTGTCTAGATACGGCTGTATTTAC 57.186 34.615 19.13 14.21 41.37 2.01
5362 6197 5.857517 GTCTAGATACGGCTGTATTTACTGC 59.142 44.000 19.13 5.75 46.37 4.40
5410 6245 8.525290 AATCTAAGACAAGTAATTTGGGATGG 57.475 34.615 0.00 0.00 41.25 3.51
5411 6246 6.423182 TCTAAGACAAGTAATTTGGGATGGG 58.577 40.000 0.00 0.00 41.25 4.00
5412 6247 3.981212 AGACAAGTAATTTGGGATGGGG 58.019 45.455 0.00 0.00 41.25 4.96
5413 6248 3.031013 GACAAGTAATTTGGGATGGGGG 58.969 50.000 0.00 0.00 41.25 5.40
5414 6249 2.385417 ACAAGTAATTTGGGATGGGGGT 59.615 45.455 0.00 0.00 41.25 4.95
5415 6250 3.598782 ACAAGTAATTTGGGATGGGGGTA 59.401 43.478 0.00 0.00 41.25 3.69
5416 6251 4.046103 ACAAGTAATTTGGGATGGGGGTAA 59.954 41.667 0.00 0.00 41.25 2.85
5417 6252 5.215845 CAAGTAATTTGGGATGGGGGTAAT 58.784 41.667 0.00 0.00 32.95 1.89
5418 6253 6.068140 ACAAGTAATTTGGGATGGGGGTAATA 60.068 38.462 0.00 0.00 41.25 0.98
5419 6254 6.813724 AGTAATTTGGGATGGGGGTAATAT 57.186 37.500 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.358247 CCTACCGCGCACCAAGTT 60.358 61.111 8.75 0.00 0.00 2.66
11 12 4.124351 TTCACTCGCCGCCTACCG 62.124 66.667 0.00 0.00 0.00 4.02
12 13 2.202756 CTTCACTCGCCGCCTACC 60.203 66.667 0.00 0.00 0.00 3.18
13 14 1.516603 GACTTCACTCGCCGCCTAC 60.517 63.158 0.00 0.00 0.00 3.18
14 15 2.707849 GGACTTCACTCGCCGCCTA 61.708 63.158 0.00 0.00 0.00 3.93
15 16 4.070552 GGACTTCACTCGCCGCCT 62.071 66.667 0.00 0.00 0.00 5.52
20 21 4.415332 TCGCCGGACTTCACTCGC 62.415 66.667 5.05 0.00 0.00 5.03
21 22 2.504244 GTCGCCGGACTTCACTCG 60.504 66.667 5.05 0.00 40.15 4.18
22 23 2.504244 CGTCGCCGGACTTCACTC 60.504 66.667 5.05 0.00 41.16 3.51
23 24 2.981909 TCGTCGCCGGACTTCACT 60.982 61.111 5.05 0.00 41.16 3.41
24 25 2.804090 GTCGTCGCCGGACTTCAC 60.804 66.667 5.05 0.00 41.16 3.18
25 26 4.394078 CGTCGTCGCCGGACTTCA 62.394 66.667 5.05 0.00 41.16 3.02
73 74 2.819595 CCGTGATTGGCCGACAGG 60.820 66.667 0.00 1.97 41.62 4.00
74 75 2.100631 GTCCGTGATTGGCCGACAG 61.101 63.158 0.00 0.00 0.00 3.51
75 76 2.047655 GTCCGTGATTGGCCGACA 60.048 61.111 0.00 0.00 0.00 4.35
76 77 1.635663 CTTGTCCGTGATTGGCCGAC 61.636 60.000 0.00 0.00 0.00 4.79
77 78 1.375396 CTTGTCCGTGATTGGCCGA 60.375 57.895 0.00 0.00 0.00 5.54
78 79 0.953471 TTCTTGTCCGTGATTGGCCG 60.953 55.000 0.00 0.00 0.00 6.13
79 80 0.804989 CTTCTTGTCCGTGATTGGCC 59.195 55.000 0.00 0.00 0.00 5.36
80 81 1.734465 CTCTTCTTGTCCGTGATTGGC 59.266 52.381 0.00 0.00 0.00 4.52
81 82 1.734465 GCTCTTCTTGTCCGTGATTGG 59.266 52.381 0.00 0.00 0.00 3.16
82 83 1.391485 CGCTCTTCTTGTCCGTGATTG 59.609 52.381 0.00 0.00 0.00 2.67
83 84 1.272490 TCGCTCTTCTTGTCCGTGATT 59.728 47.619 0.00 0.00 0.00 2.57
84 85 0.888619 TCGCTCTTCTTGTCCGTGAT 59.111 50.000 0.00 0.00 0.00 3.06
85 86 0.039437 GTCGCTCTTCTTGTCCGTGA 60.039 55.000 0.00 0.00 0.00 4.35
86 87 1.337817 CGTCGCTCTTCTTGTCCGTG 61.338 60.000 0.00 0.00 0.00 4.94
87 88 1.081376 CGTCGCTCTTCTTGTCCGT 60.081 57.895 0.00 0.00 0.00 4.69
88 89 0.386858 TTCGTCGCTCTTCTTGTCCG 60.387 55.000 0.00 0.00 0.00 4.79
89 90 1.656095 CATTCGTCGCTCTTCTTGTCC 59.344 52.381 0.00 0.00 0.00 4.02
90 91 2.596452 TCATTCGTCGCTCTTCTTGTC 58.404 47.619 0.00 0.00 0.00 3.18
91 92 2.724977 TCATTCGTCGCTCTTCTTGT 57.275 45.000 0.00 0.00 0.00 3.16
92 93 3.242220 CCAATCATTCGTCGCTCTTCTTG 60.242 47.826 0.00 0.00 0.00 3.02
93 94 2.932614 CCAATCATTCGTCGCTCTTCTT 59.067 45.455 0.00 0.00 0.00 2.52
94 95 2.544685 CCAATCATTCGTCGCTCTTCT 58.455 47.619 0.00 0.00 0.00 2.85
95 96 1.594862 CCCAATCATTCGTCGCTCTTC 59.405 52.381 0.00 0.00 0.00 2.87
96 97 1.656652 CCCAATCATTCGTCGCTCTT 58.343 50.000 0.00 0.00 0.00 2.85
97 98 0.179073 CCCCAATCATTCGTCGCTCT 60.179 55.000 0.00 0.00 0.00 4.09
98 99 1.160329 CCCCCAATCATTCGTCGCTC 61.160 60.000 0.00 0.00 0.00 5.03
99 100 1.153168 CCCCCAATCATTCGTCGCT 60.153 57.895 0.00 0.00 0.00 4.93
100 101 1.153249 TCCCCCAATCATTCGTCGC 60.153 57.895 0.00 0.00 0.00 5.19
101 102 0.532862 CCTCCCCCAATCATTCGTCG 60.533 60.000 0.00 0.00 0.00 5.12
102 103 0.179018 CCCTCCCCCAATCATTCGTC 60.179 60.000 0.00 0.00 0.00 4.20
103 104 1.645402 CCCCTCCCCCAATCATTCGT 61.645 60.000 0.00 0.00 0.00 3.85
104 105 1.151450 CCCCTCCCCCAATCATTCG 59.849 63.158 0.00 0.00 0.00 3.34
105 106 0.480252 CTCCCCTCCCCCAATCATTC 59.520 60.000 0.00 0.00 0.00 2.67
106 107 1.001140 CCTCCCCTCCCCCAATCATT 61.001 60.000 0.00 0.00 0.00 2.57
107 108 1.387926 CCTCCCCTCCCCCAATCAT 60.388 63.158 0.00 0.00 0.00 2.45
108 109 2.044450 CCTCCCCTCCCCCAATCA 59.956 66.667 0.00 0.00 0.00 2.57
109 110 2.778717 CCCTCCCCTCCCCCAATC 60.779 72.222 0.00 0.00 0.00 2.67
110 111 3.309509 TCCCTCCCCTCCCCCAAT 61.310 66.667 0.00 0.00 0.00 3.16
111 112 4.038804 CTCCCTCCCCTCCCCCAA 62.039 72.222 0.00 0.00 0.00 4.12
113 114 4.500826 GTCTCCCTCCCCTCCCCC 62.501 77.778 0.00 0.00 0.00 5.40
114 115 2.782997 TTTGTCTCCCTCCCCTCCCC 62.783 65.000 0.00 0.00 0.00 4.81
115 116 0.845102 TTTTGTCTCCCTCCCCTCCC 60.845 60.000 0.00 0.00 0.00 4.30
116 117 1.299939 ATTTTGTCTCCCTCCCCTCC 58.700 55.000 0.00 0.00 0.00 4.30
117 118 4.586306 TTTATTTTGTCTCCCTCCCCTC 57.414 45.455 0.00 0.00 0.00 4.30
118 119 4.871822 CATTTATTTTGTCTCCCTCCCCT 58.128 43.478 0.00 0.00 0.00 4.79
119 120 3.384789 GCATTTATTTTGTCTCCCTCCCC 59.615 47.826 0.00 0.00 0.00 4.81
120 121 4.023291 TGCATTTATTTTGTCTCCCTCCC 58.977 43.478 0.00 0.00 0.00 4.30
121 122 5.185828 ACTTGCATTTATTTTGTCTCCCTCC 59.814 40.000 0.00 0.00 0.00 4.30
122 123 6.071952 TCACTTGCATTTATTTTGTCTCCCTC 60.072 38.462 0.00 0.00 0.00 4.30
123 124 5.774690 TCACTTGCATTTATTTTGTCTCCCT 59.225 36.000 0.00 0.00 0.00 4.20
124 125 6.024552 TCACTTGCATTTATTTTGTCTCCC 57.975 37.500 0.00 0.00 0.00 4.30
125 126 7.945033 TTTCACTTGCATTTATTTTGTCTCC 57.055 32.000 0.00 0.00 0.00 3.71
133 134 9.009327 CGTCGAATATTTTCACTTGCATTTATT 57.991 29.630 0.00 0.00 0.00 1.40
134 135 7.643764 CCGTCGAATATTTTCACTTGCATTTAT 59.356 33.333 0.00 0.00 0.00 1.40
135 136 6.964370 CCGTCGAATATTTTCACTTGCATTTA 59.036 34.615 0.00 0.00 0.00 1.40
136 137 5.799936 CCGTCGAATATTTTCACTTGCATTT 59.200 36.000 0.00 0.00 0.00 2.32
137 138 5.331902 CCGTCGAATATTTTCACTTGCATT 58.668 37.500 0.00 0.00 0.00 3.56
138 139 4.730613 GCCGTCGAATATTTTCACTTGCAT 60.731 41.667 0.00 0.00 0.00 3.96
139 140 3.425625 GCCGTCGAATATTTTCACTTGCA 60.426 43.478 0.00 0.00 0.00 4.08
140 141 3.098636 GCCGTCGAATATTTTCACTTGC 58.901 45.455 0.00 0.00 0.00 4.01
141 142 4.335082 TGCCGTCGAATATTTTCACTTG 57.665 40.909 0.00 0.00 0.00 3.16
142 143 4.668177 CGTTGCCGTCGAATATTTTCACTT 60.668 41.667 0.00 0.00 0.00 3.16
143 144 3.181524 CGTTGCCGTCGAATATTTTCACT 60.182 43.478 0.00 0.00 0.00 3.41
144 145 3.088552 CGTTGCCGTCGAATATTTTCAC 58.911 45.455 0.00 0.00 0.00 3.18
145 146 2.994578 TCGTTGCCGTCGAATATTTTCA 59.005 40.909 0.00 0.00 34.36 2.69
146 147 3.543460 CCTCGTTGCCGTCGAATATTTTC 60.543 47.826 0.00 0.00 36.89 2.29
147 148 2.350498 CCTCGTTGCCGTCGAATATTTT 59.650 45.455 0.00 0.00 36.89 1.82
148 149 1.931172 CCTCGTTGCCGTCGAATATTT 59.069 47.619 0.00 0.00 36.89 1.40
149 150 1.134907 ACCTCGTTGCCGTCGAATATT 60.135 47.619 0.00 0.00 36.89 1.28
150 151 0.458669 ACCTCGTTGCCGTCGAATAT 59.541 50.000 0.00 0.00 36.89 1.28
151 152 0.457166 CACCTCGTTGCCGTCGAATA 60.457 55.000 0.00 0.00 36.89 1.75
152 153 1.736645 CACCTCGTTGCCGTCGAAT 60.737 57.895 0.00 0.00 36.89 3.34
153 154 1.794151 TACACCTCGTTGCCGTCGAA 61.794 55.000 0.00 0.00 36.89 3.71
154 155 2.191354 CTACACCTCGTTGCCGTCGA 62.191 60.000 0.00 0.00 35.96 4.20
155 156 1.800315 CTACACCTCGTTGCCGTCG 60.800 63.158 0.00 0.00 35.01 5.12
156 157 2.092882 GCTACACCTCGTTGCCGTC 61.093 63.158 0.00 0.00 40.05 4.79
157 158 2.048503 GCTACACCTCGTTGCCGT 60.049 61.111 0.00 0.00 40.05 5.68
158 159 3.179265 CGCTACACCTCGTTGCCG 61.179 66.667 0.00 0.00 42.57 5.69
159 160 3.488090 GCGCTACACCTCGTTGCC 61.488 66.667 0.00 0.00 42.57 4.52
160 161 3.838795 CGCGCTACACCTCGTTGC 61.839 66.667 5.56 0.00 42.18 4.17
161 162 3.179265 CCGCGCTACACCTCGTTG 61.179 66.667 5.56 0.00 0.00 4.10
162 163 4.430765 CCCGCGCTACACCTCGTT 62.431 66.667 5.56 0.00 0.00 3.85
164 165 4.430765 AACCCGCGCTACACCTCG 62.431 66.667 5.56 0.00 0.00 4.63
165 166 2.573609 ATCAACCCGCGCTACACCTC 62.574 60.000 5.56 0.00 0.00 3.85
166 167 1.324740 TATCAACCCGCGCTACACCT 61.325 55.000 5.56 0.00 0.00 4.00
167 168 0.460635 TTATCAACCCGCGCTACACC 60.461 55.000 5.56 0.00 0.00 4.16
168 169 0.648958 GTTATCAACCCGCGCTACAC 59.351 55.000 5.56 0.00 0.00 2.90
169 170 0.533491 AGTTATCAACCCGCGCTACA 59.467 50.000 5.56 0.00 0.00 2.74
170 171 0.928229 CAGTTATCAACCCGCGCTAC 59.072 55.000 5.56 0.00 0.00 3.58
171 172 0.808453 GCAGTTATCAACCCGCGCTA 60.808 55.000 5.56 0.00 0.00 4.26
172 173 2.106683 GCAGTTATCAACCCGCGCT 61.107 57.895 5.56 0.00 0.00 5.92
173 174 0.808453 TAGCAGTTATCAACCCGCGC 60.808 55.000 0.00 0.00 35.95 6.86
174 175 1.209128 CTAGCAGTTATCAACCCGCG 58.791 55.000 0.00 0.00 35.95 6.46
175 176 1.583054 CCTAGCAGTTATCAACCCGC 58.417 55.000 0.00 0.00 0.00 6.13
176 177 1.485066 ACCCTAGCAGTTATCAACCCG 59.515 52.381 0.00 0.00 0.00 5.28
177 178 4.765813 TTACCCTAGCAGTTATCAACCC 57.234 45.455 0.00 0.00 0.00 4.11
178 179 5.008712 GCATTTACCCTAGCAGTTATCAACC 59.991 44.000 0.00 0.00 0.00 3.77
179 180 5.588648 TGCATTTACCCTAGCAGTTATCAAC 59.411 40.000 0.00 0.00 32.48 3.18
180 181 5.750524 TGCATTTACCCTAGCAGTTATCAA 58.249 37.500 0.00 0.00 32.48 2.57
181 182 5.366482 TGCATTTACCCTAGCAGTTATCA 57.634 39.130 0.00 0.00 32.48 2.15
182 183 6.693315 TTTGCATTTACCCTAGCAGTTATC 57.307 37.500 0.00 0.00 38.35 1.75
183 184 7.178451 ACTTTTTGCATTTACCCTAGCAGTTAT 59.822 33.333 0.00 0.00 38.35 1.89
184 185 6.492087 ACTTTTTGCATTTACCCTAGCAGTTA 59.508 34.615 0.00 0.00 38.35 2.24
185 186 5.304357 ACTTTTTGCATTTACCCTAGCAGTT 59.696 36.000 0.00 0.00 38.35 3.16
186 187 4.832823 ACTTTTTGCATTTACCCTAGCAGT 59.167 37.500 0.00 0.00 38.35 4.40
187 188 5.163513 CACTTTTTGCATTTACCCTAGCAG 58.836 41.667 0.00 0.00 38.35 4.24
188 189 5.132897 CACTTTTTGCATTTACCCTAGCA 57.867 39.130 0.00 0.00 34.79 3.49
202 203 2.010817 GTCAGCGCCGCACTTTTTG 61.011 57.895 13.36 0.00 0.00 2.44
203 204 2.331451 GTCAGCGCCGCACTTTTT 59.669 55.556 13.36 0.00 0.00 1.94
204 205 3.660111 GGTCAGCGCCGCACTTTT 61.660 61.111 13.36 0.00 0.00 2.27
221 222 3.411351 CGACAACAACCGGAGCCG 61.411 66.667 9.46 1.06 39.44 5.52
222 223 2.280592 ACGACAACAACCGGAGCC 60.281 61.111 9.46 0.00 0.00 4.70
223 224 1.300697 AGACGACAACAACCGGAGC 60.301 57.895 9.46 0.00 0.00 4.70
224 225 0.031585 TCAGACGACAACAACCGGAG 59.968 55.000 9.46 1.96 0.00 4.63
225 226 0.677288 ATCAGACGACAACAACCGGA 59.323 50.000 9.46 0.00 0.00 5.14
226 227 1.194547 CAATCAGACGACAACAACCGG 59.805 52.381 0.00 0.00 0.00 5.28
227 228 1.194547 CCAATCAGACGACAACAACCG 59.805 52.381 0.00 0.00 0.00 4.44
228 229 1.069227 GCCAATCAGACGACAACAACC 60.069 52.381 0.00 0.00 0.00 3.77
229 230 1.873591 AGCCAATCAGACGACAACAAC 59.126 47.619 0.00 0.00 0.00 3.32
230 231 1.872952 CAGCCAATCAGACGACAACAA 59.127 47.619 0.00 0.00 0.00 2.83
231 232 1.069978 TCAGCCAATCAGACGACAACA 59.930 47.619 0.00 0.00 0.00 3.33
232 233 1.728971 CTCAGCCAATCAGACGACAAC 59.271 52.381 0.00 0.00 0.00 3.32
233 234 1.338105 CCTCAGCCAATCAGACGACAA 60.338 52.381 0.00 0.00 0.00 3.18
234 235 0.247460 CCTCAGCCAATCAGACGACA 59.753 55.000 0.00 0.00 0.00 4.35
235 236 0.532573 TCCTCAGCCAATCAGACGAC 59.467 55.000 0.00 0.00 0.00 4.34
236 237 0.532573 GTCCTCAGCCAATCAGACGA 59.467 55.000 0.00 0.00 0.00 4.20
237 238 0.460987 GGTCCTCAGCCAATCAGACG 60.461 60.000 0.00 0.00 0.00 4.18
238 239 0.615331 TGGTCCTCAGCCAATCAGAC 59.385 55.000 0.00 0.00 32.29 3.51
239 240 1.361204 TTGGTCCTCAGCCAATCAGA 58.639 50.000 0.00 0.00 40.69 3.27
240 241 2.205022 TTTGGTCCTCAGCCAATCAG 57.795 50.000 0.00 0.00 44.44 2.90
241 242 2.309755 AGATTTGGTCCTCAGCCAATCA 59.690 45.455 0.00 0.00 44.44 2.57
242 243 2.686915 CAGATTTGGTCCTCAGCCAATC 59.313 50.000 0.00 0.00 44.44 2.67
243 244 2.731572 CAGATTTGGTCCTCAGCCAAT 58.268 47.619 0.00 0.00 44.44 3.16
244 245 1.887956 GCAGATTTGGTCCTCAGCCAA 60.888 52.381 0.00 0.00 43.51 4.52
245 246 0.322816 GCAGATTTGGTCCTCAGCCA 60.323 55.000 0.00 0.00 0.00 4.75
246 247 0.322816 TGCAGATTTGGTCCTCAGCC 60.323 55.000 0.00 0.00 0.00 4.85
247 248 0.807496 GTGCAGATTTGGTCCTCAGC 59.193 55.000 0.00 0.00 0.00 4.26
248 249 2.189594 TGTGCAGATTTGGTCCTCAG 57.810 50.000 0.00 0.00 0.00 3.35
249 250 2.885135 ATGTGCAGATTTGGTCCTCA 57.115 45.000 0.00 0.00 0.00 3.86
250 251 3.209410 CCTATGTGCAGATTTGGTCCTC 58.791 50.000 0.00 0.00 0.00 3.71
251 252 2.092212 CCCTATGTGCAGATTTGGTCCT 60.092 50.000 0.00 0.00 0.00 3.85
252 253 2.301346 CCCTATGTGCAGATTTGGTCC 58.699 52.381 0.00 0.00 0.00 4.46
253 254 2.684881 CACCCTATGTGCAGATTTGGTC 59.315 50.000 12.36 0.00 38.34 4.02
254 255 2.726821 CACCCTATGTGCAGATTTGGT 58.273 47.619 0.00 6.41 38.34 3.67
265 266 2.910319 TCCTACAACTTGCACCCTATGT 59.090 45.455 0.00 0.00 0.00 2.29
266 267 3.627395 TCCTACAACTTGCACCCTATG 57.373 47.619 0.00 0.00 0.00 2.23
267 268 3.780294 TCATCCTACAACTTGCACCCTAT 59.220 43.478 0.00 0.00 0.00 2.57
268 269 3.178046 TCATCCTACAACTTGCACCCTA 58.822 45.455 0.00 0.00 0.00 3.53
269 270 1.985159 TCATCCTACAACTTGCACCCT 59.015 47.619 0.00 0.00 0.00 4.34
270 271 2.489938 TCATCCTACAACTTGCACCC 57.510 50.000 0.00 0.00 0.00 4.61
271 272 5.648092 ACTATTTCATCCTACAACTTGCACC 59.352 40.000 0.00 0.00 0.00 5.01
272 273 6.743575 ACTATTTCATCCTACAACTTGCAC 57.256 37.500 0.00 0.00 0.00 4.57
273 274 7.065803 GCTAACTATTTCATCCTACAACTTGCA 59.934 37.037 0.00 0.00 0.00 4.08
274 275 7.281100 AGCTAACTATTTCATCCTACAACTTGC 59.719 37.037 0.00 0.00 0.00 4.01
275 276 8.723942 AGCTAACTATTTCATCCTACAACTTG 57.276 34.615 0.00 0.00 0.00 3.16
276 277 9.740710 AAAGCTAACTATTTCATCCTACAACTT 57.259 29.630 0.00 0.00 0.00 2.66
277 278 9.740710 AAAAGCTAACTATTTCATCCTACAACT 57.259 29.630 0.00 0.00 0.00 3.16
301 302 9.567776 TGATGATGTAGTCCTGAAACTTAAAAA 57.432 29.630 0.00 0.00 0.00 1.94
302 303 8.999431 GTGATGATGTAGTCCTGAAACTTAAAA 58.001 33.333 0.00 0.00 0.00 1.52
303 304 8.154203 TGTGATGATGTAGTCCTGAAACTTAAA 58.846 33.333 0.00 0.00 0.00 1.52
304 305 7.676004 TGTGATGATGTAGTCCTGAAACTTAA 58.324 34.615 0.00 0.00 0.00 1.85
305 306 7.239763 TGTGATGATGTAGTCCTGAAACTTA 57.760 36.000 0.00 0.00 0.00 2.24
306 307 6.114187 TGTGATGATGTAGTCCTGAAACTT 57.886 37.500 0.00 0.00 0.00 2.66
307 308 5.745312 TGTGATGATGTAGTCCTGAAACT 57.255 39.130 0.00 0.00 0.00 2.66
308 309 5.233050 CGATGTGATGATGTAGTCCTGAAAC 59.767 44.000 0.00 0.00 0.00 2.78
309 310 5.127031 TCGATGTGATGATGTAGTCCTGAAA 59.873 40.000 0.00 0.00 0.00 2.69
310 311 4.644685 TCGATGTGATGATGTAGTCCTGAA 59.355 41.667 0.00 0.00 0.00 3.02
311 312 4.207165 TCGATGTGATGATGTAGTCCTGA 58.793 43.478 0.00 0.00 0.00 3.86
312 313 4.544651 CTCGATGTGATGATGTAGTCCTG 58.455 47.826 0.00 0.00 0.00 3.86
313 314 3.571828 CCTCGATGTGATGATGTAGTCCT 59.428 47.826 0.00 0.00 0.00 3.85
314 315 3.570125 TCCTCGATGTGATGATGTAGTCC 59.430 47.826 0.00 0.00 0.00 3.85
315 316 4.036852 TGTCCTCGATGTGATGATGTAGTC 59.963 45.833 0.00 0.00 0.00 2.59
316 317 3.954258 TGTCCTCGATGTGATGATGTAGT 59.046 43.478 0.00 0.00 0.00 2.73
317 318 4.574599 TGTCCTCGATGTGATGATGTAG 57.425 45.455 0.00 0.00 0.00 2.74
318 319 4.402474 ACTTGTCCTCGATGTGATGATGTA 59.598 41.667 0.00 0.00 0.00 2.29
319 320 3.196469 ACTTGTCCTCGATGTGATGATGT 59.804 43.478 0.00 0.00 0.00 3.06
320 321 3.790091 ACTTGTCCTCGATGTGATGATG 58.210 45.455 0.00 0.00 0.00 3.07
321 322 4.437239 GAACTTGTCCTCGATGTGATGAT 58.563 43.478 0.00 0.00 0.00 2.45
322 323 3.673323 CGAACTTGTCCTCGATGTGATGA 60.673 47.826 0.00 0.00 37.23 2.92
323 324 2.600420 CGAACTTGTCCTCGATGTGATG 59.400 50.000 0.00 0.00 37.23 3.07
324 325 2.492088 TCGAACTTGTCCTCGATGTGAT 59.508 45.455 0.00 0.00 39.07 3.06
325 326 1.883926 TCGAACTTGTCCTCGATGTGA 59.116 47.619 0.00 0.00 39.07 3.58
326 327 2.254459 CTCGAACTTGTCCTCGATGTG 58.746 52.381 0.00 0.00 42.73 3.21
327 328 1.202582 CCTCGAACTTGTCCTCGATGT 59.797 52.381 0.00 0.00 42.73 3.06
328 329 1.472878 TCCTCGAACTTGTCCTCGATG 59.527 52.381 0.00 0.00 42.73 3.84
329 330 1.835494 TCCTCGAACTTGTCCTCGAT 58.165 50.000 0.00 0.00 42.73 3.59
330 331 1.835494 ATCCTCGAACTTGTCCTCGA 58.165 50.000 0.00 0.00 41.54 4.04
331 332 2.531206 GAATCCTCGAACTTGTCCTCG 58.469 52.381 0.00 0.00 36.39 4.63
332 333 2.498078 AGGAATCCTCGAACTTGTCCTC 59.502 50.000 0.00 0.00 27.49 3.71
333 334 2.234908 CAGGAATCCTCGAACTTGTCCT 59.765 50.000 0.00 0.00 34.31 3.85
334 335 2.233922 TCAGGAATCCTCGAACTTGTCC 59.766 50.000 0.00 0.00 0.00 4.02
335 336 3.594603 TCAGGAATCCTCGAACTTGTC 57.405 47.619 0.00 0.00 0.00 3.18
336 337 3.866651 CATCAGGAATCCTCGAACTTGT 58.133 45.455 0.00 0.00 0.00 3.16
337 338 2.611292 GCATCAGGAATCCTCGAACTTG 59.389 50.000 0.00 0.00 0.00 3.16
338 339 2.503356 AGCATCAGGAATCCTCGAACTT 59.497 45.455 0.00 0.00 0.00 2.66
339 340 2.114616 AGCATCAGGAATCCTCGAACT 58.885 47.619 0.00 1.00 0.00 3.01
340 341 2.611225 AGCATCAGGAATCCTCGAAC 57.389 50.000 0.00 0.00 0.00 3.95
341 342 4.963318 AATAGCATCAGGAATCCTCGAA 57.037 40.909 0.00 0.00 0.00 3.71
342 343 4.220821 GGTAATAGCATCAGGAATCCTCGA 59.779 45.833 0.00 1.07 0.00 4.04
343 344 4.499183 GGTAATAGCATCAGGAATCCTCG 58.501 47.826 0.00 0.00 0.00 4.63
344 345 4.323868 GGGGTAATAGCATCAGGAATCCTC 60.324 50.000 0.00 0.00 0.00 3.71
345 346 3.589288 GGGGTAATAGCATCAGGAATCCT 59.411 47.826 0.00 0.00 0.00 3.24
346 347 3.589288 AGGGGTAATAGCATCAGGAATCC 59.411 47.826 0.00 0.00 0.00 3.01
347 348 4.534103 AGAGGGGTAATAGCATCAGGAATC 59.466 45.833 0.00 0.00 0.00 2.52
348 349 4.507342 AGAGGGGTAATAGCATCAGGAAT 58.493 43.478 0.00 0.00 0.00 3.01
349 350 3.904339 GAGAGGGGTAATAGCATCAGGAA 59.096 47.826 0.00 0.00 0.00 3.36
350 351 3.142977 AGAGAGGGGTAATAGCATCAGGA 59.857 47.826 0.00 0.00 0.00 3.86
351 352 3.513515 GAGAGAGGGGTAATAGCATCAGG 59.486 52.174 0.00 0.00 0.00 3.86
352 353 4.415596 AGAGAGAGGGGTAATAGCATCAG 58.584 47.826 0.00 0.00 0.00 2.90
353 354 4.477536 AGAGAGAGGGGTAATAGCATCA 57.522 45.455 0.00 0.00 0.00 3.07
354 355 7.351166 ACTATAGAGAGAGGGGTAATAGCATC 58.649 42.308 6.78 0.00 0.00 3.91
355 356 7.291991 ACTATAGAGAGAGGGGTAATAGCAT 57.708 40.000 6.78 0.00 0.00 3.79
356 357 6.721843 ACTATAGAGAGAGGGGTAATAGCA 57.278 41.667 6.78 0.00 0.00 3.49
357 358 7.056006 GGTACTATAGAGAGAGGGGTAATAGC 58.944 46.154 6.78 0.00 0.00 2.97
358 359 7.274447 CGGTACTATAGAGAGAGGGGTAATAG 58.726 46.154 6.78 0.00 0.00 1.73
359 360 6.352565 GCGGTACTATAGAGAGAGGGGTAATA 60.353 46.154 6.78 0.00 0.00 0.98
360 361 5.573296 GCGGTACTATAGAGAGAGGGGTAAT 60.573 48.000 6.78 0.00 0.00 1.89
361 362 4.263243 GCGGTACTATAGAGAGAGGGGTAA 60.263 50.000 6.78 0.00 0.00 2.85
362 363 3.262915 GCGGTACTATAGAGAGAGGGGTA 59.737 52.174 6.78 0.00 0.00 3.69
363 364 2.040145 GCGGTACTATAGAGAGAGGGGT 59.960 54.545 6.78 0.00 0.00 4.95
364 365 2.618559 GGCGGTACTATAGAGAGAGGGG 60.619 59.091 6.78 0.00 0.00 4.79
365 366 2.713877 GGCGGTACTATAGAGAGAGGG 58.286 57.143 6.78 0.00 0.00 4.30
366 367 2.348660 CGGCGGTACTATAGAGAGAGG 58.651 57.143 6.78 0.00 0.00 3.69
367 368 1.733360 GCGGCGGTACTATAGAGAGAG 59.267 57.143 9.78 0.00 0.00 3.20
368 369 1.347050 AGCGGCGGTACTATAGAGAGA 59.653 52.381 11.06 0.00 0.00 3.10
369 370 1.810959 AGCGGCGGTACTATAGAGAG 58.189 55.000 11.06 0.00 0.00 3.20
370 371 3.623906 ATAGCGGCGGTACTATAGAGA 57.376 47.619 22.04 0.00 0.00 3.10
371 372 3.688185 TGAATAGCGGCGGTACTATAGAG 59.312 47.826 22.04 0.00 0.00 2.43
372 373 3.678289 TGAATAGCGGCGGTACTATAGA 58.322 45.455 22.04 0.00 0.00 1.98
373 374 4.430137 TTGAATAGCGGCGGTACTATAG 57.570 45.455 22.04 0.00 0.00 1.31
374 375 4.852134 TTTGAATAGCGGCGGTACTATA 57.148 40.909 22.04 0.00 0.00 1.31
375 376 3.738830 TTTGAATAGCGGCGGTACTAT 57.261 42.857 22.04 10.22 0.00 2.12
376 377 3.386486 CATTTGAATAGCGGCGGTACTA 58.614 45.455 22.04 8.11 0.00 1.82
377 378 2.210116 CATTTGAATAGCGGCGGTACT 58.790 47.619 22.04 11.07 0.00 2.73
378 379 1.333791 GCATTTGAATAGCGGCGGTAC 60.334 52.381 22.04 10.31 0.00 3.34
419 420 3.443045 GGGCGGTCGTTCTCGGTA 61.443 66.667 0.00 0.00 37.69 4.02
484 485 4.767255 GAGCCCGTGCAGGTGGAG 62.767 72.222 15.41 2.17 41.13 3.86
489 490 4.880537 CTAGCGAGCCCGTGCAGG 62.881 72.222 0.00 0.00 41.13 4.85
490 491 2.669808 CTACTAGCGAGCCCGTGCAG 62.670 65.000 0.00 0.00 41.13 4.41
491 492 2.752640 TACTAGCGAGCCCGTGCA 60.753 61.111 0.00 0.00 41.13 4.57
492 493 2.026301 CTACTAGCGAGCCCGTGC 59.974 66.667 0.00 0.00 38.24 5.34
493 494 0.248539 GAACTACTAGCGAGCCCGTG 60.249 60.000 0.00 0.00 38.24 4.94
494 495 0.679002 TGAACTACTAGCGAGCCCGT 60.679 55.000 0.00 0.00 38.24 5.28
540 541 8.119226 GCATGAATTAAGACACAAGCTAACTAG 58.881 37.037 0.00 0.00 0.00 2.57
543 573 6.030228 GGCATGAATTAAGACACAAGCTAAC 58.970 40.000 0.00 0.00 0.00 2.34
573 603 6.952743 AGTACGAAGAATCATCATCAAATGC 58.047 36.000 0.00 0.00 0.00 3.56
644 989 6.860539 CCCTTTTGTGTTTTTCTTTGTTTTGG 59.139 34.615 0.00 0.00 0.00 3.28
681 1030 0.179045 AGAGTGTGTGTGTTCCAGCC 60.179 55.000 0.00 0.00 0.00 4.85
682 1031 1.202580 AGAGAGTGTGTGTGTTCCAGC 60.203 52.381 0.00 0.00 0.00 4.85
684 1033 2.362397 GAGAGAGAGTGTGTGTGTTCCA 59.638 50.000 0.00 0.00 0.00 3.53
685 1034 2.625790 AGAGAGAGAGTGTGTGTGTTCC 59.374 50.000 0.00 0.00 0.00 3.62
686 1035 3.568007 AGAGAGAGAGAGTGTGTGTGTTC 59.432 47.826 0.00 0.00 0.00 3.18
687 1036 3.561143 AGAGAGAGAGAGTGTGTGTGTT 58.439 45.455 0.00 0.00 0.00 3.32
711 1073 3.442273 AGTCAGCTTTAACCGAGAGAGAG 59.558 47.826 0.00 0.00 0.00 3.20
712 1074 3.422796 AGTCAGCTTTAACCGAGAGAGA 58.577 45.455 0.00 0.00 0.00 3.10
713 1075 3.859411 AGTCAGCTTTAACCGAGAGAG 57.141 47.619 0.00 0.00 0.00 3.20
714 1076 4.281182 AGAAAGTCAGCTTTAACCGAGAGA 59.719 41.667 0.00 0.00 44.25 3.10
715 1077 4.387256 CAGAAAGTCAGCTTTAACCGAGAG 59.613 45.833 0.00 0.00 44.25 3.20
716 1078 4.307432 CAGAAAGTCAGCTTTAACCGAGA 58.693 43.478 0.00 0.00 44.25 4.04
757 1119 1.079057 GTTTCTGGCTCCGGAGACC 60.079 63.158 34.47 30.71 34.90 3.85
969 1336 4.287067 TCAGCCAAGAAACAGAGGAATACT 59.713 41.667 0.00 0.00 0.00 2.12
1125 1521 0.466124 CCCTCCCTCAATCGAAGGAC 59.534 60.000 3.07 0.00 28.33 3.85
1166 1602 2.580815 CAGCTGAGATGACGCCCA 59.419 61.111 8.42 0.00 0.00 5.36
1202 1638 0.523072 CATCAAGCACCAAACCGGAG 59.477 55.000 9.46 0.00 38.63 4.63
1215 1651 4.352600 AAGCGATGAAAGAAGCATCAAG 57.647 40.909 0.00 0.00 41.66 3.02
1242 1678 4.367023 TTTAGAGGCGCGGCGTGT 62.367 61.111 27.74 17.58 0.00 4.49
1362 1805 9.284968 CTAAGTAAACAAAAAGGAGGAGAATGA 57.715 33.333 0.00 0.00 0.00 2.57
1635 2093 5.603170 AAACGCTACCTTAGTATAGCCAA 57.397 39.130 7.03 0.00 40.66 4.52
1642 2100 6.171921 TGGCAAAATAAACGCTACCTTAGTA 58.828 36.000 0.00 0.00 0.00 1.82
1647 2105 3.380320 GGATGGCAAAATAAACGCTACCT 59.620 43.478 0.00 0.00 0.00 3.08
1649 2107 4.364415 TGGATGGCAAAATAAACGCTAC 57.636 40.909 0.00 0.00 0.00 3.58
1732 2197 5.401550 ACAACATCAGAACACACAGTTTTG 58.598 37.500 0.00 0.00 41.51 2.44
1809 2277 2.309162 AGCTAGGAAAAAGGAGTTCCCC 59.691 50.000 0.00 0.00 44.90 4.81
1811 2279 4.287766 TCAGCTAGGAAAAAGGAGTTCC 57.712 45.455 0.00 0.00 44.25 3.62
1922 2390 6.264518 GGAACATAGAACAAGGAACCAAAGAA 59.735 38.462 0.00 0.00 0.00 2.52
1984 2465 5.752955 CCCAATTGTGTTGAGGTTAAAACTG 59.247 40.000 4.43 0.00 0.00 3.16
1985 2466 5.683770 GCCCAATTGTGTTGAGGTTAAAACT 60.684 40.000 4.43 0.00 0.00 2.66
1986 2467 4.509970 GCCCAATTGTGTTGAGGTTAAAAC 59.490 41.667 4.43 0.00 0.00 2.43
1987 2468 4.407296 AGCCCAATTGTGTTGAGGTTAAAA 59.593 37.500 4.43 0.00 0.00 1.52
1988 2469 3.964031 AGCCCAATTGTGTTGAGGTTAAA 59.036 39.130 4.43 0.00 0.00 1.52
1989 2470 3.571590 AGCCCAATTGTGTTGAGGTTAA 58.428 40.909 4.43 0.00 0.00 2.01
1990 2471 3.237268 AGCCCAATTGTGTTGAGGTTA 57.763 42.857 4.43 0.00 0.00 2.85
2004 2485 0.608035 CCCTTTGTCGCTTAGCCCAA 60.608 55.000 0.00 0.00 0.00 4.12
2005 2486 1.002624 CCCTTTGTCGCTTAGCCCA 60.003 57.895 0.00 0.00 0.00 5.36
2011 2492 1.172812 GGTCTTGCCCTTTGTCGCTT 61.173 55.000 0.00 0.00 0.00 4.68
2013 2494 1.600916 AGGTCTTGCCCTTTGTCGC 60.601 57.895 0.00 0.00 38.26 5.19
2014 2495 0.250295 TCAGGTCTTGCCCTTTGTCG 60.250 55.000 0.00 0.00 38.26 4.35
2022 2503 5.023533 TCAATGTACTATCAGGTCTTGCC 57.976 43.478 0.00 0.00 37.58 4.52
2023 2504 5.521735 CACTCAATGTACTATCAGGTCTTGC 59.478 44.000 0.00 0.00 0.00 4.01
2067 2548 6.460676 GCCTGGCTCTACGAGTTAAACTATTA 60.461 42.308 12.43 0.00 31.39 0.98
2070 2551 3.129988 GCCTGGCTCTACGAGTTAAACTA 59.870 47.826 12.43 0.00 31.39 2.24
2071 2552 2.094130 GCCTGGCTCTACGAGTTAAACT 60.094 50.000 12.43 0.00 31.39 2.66
2072 2553 2.269172 GCCTGGCTCTACGAGTTAAAC 58.731 52.381 12.43 0.00 31.39 2.01
2076 2557 2.711922 CCGCCTGGCTCTACGAGTT 61.712 63.158 17.92 0.00 31.39 3.01
2077 2558 3.141488 CCGCCTGGCTCTACGAGT 61.141 66.667 17.92 0.00 31.39 4.18
2078 2559 1.739338 ATTCCGCCTGGCTCTACGAG 61.739 60.000 17.92 0.00 34.14 4.18
2079 2560 1.735376 GATTCCGCCTGGCTCTACGA 61.735 60.000 17.92 1.30 34.14 3.43
2080 2561 1.300233 GATTCCGCCTGGCTCTACG 60.300 63.158 17.92 0.00 34.14 3.51
2081 2562 1.300233 CGATTCCGCCTGGCTCTAC 60.300 63.158 17.92 3.63 34.14 2.59
2082 2563 1.040893 TTCGATTCCGCCTGGCTCTA 61.041 55.000 17.92 1.33 35.37 2.43
2083 2564 1.690219 ATTCGATTCCGCCTGGCTCT 61.690 55.000 17.92 0.00 35.37 4.09
2084 2565 1.224722 GATTCGATTCCGCCTGGCTC 61.225 60.000 17.92 6.34 35.37 4.70
2092 2573 3.679980 AGAGTGTTTGTGATTCGATTCCG 59.320 43.478 4.94 0.00 37.07 4.30
2107 2588 3.891366 CCAAATTTCAGGGACAGAGTGTT 59.109 43.478 0.00 0.00 0.00 3.32
2110 2591 4.453480 TTCCAAATTTCAGGGACAGAGT 57.547 40.909 0.00 0.00 0.00 3.24
2158 2925 5.569059 CCAATCAGCACAATTCTAAACGAAC 59.431 40.000 0.00 0.00 33.72 3.95
2161 2928 5.295431 TCCAATCAGCACAATTCTAAACG 57.705 39.130 0.00 0.00 0.00 3.60
2167 2934 3.863142 AAGCTCCAATCAGCACAATTC 57.137 42.857 0.00 0.00 42.40 2.17
2170 2937 5.709631 TGTAAATAAGCTCCAATCAGCACAA 59.290 36.000 0.00 0.00 42.40 3.33
2172 2939 5.220931 CCTGTAAATAAGCTCCAATCAGCAC 60.221 44.000 0.00 0.00 42.40 4.40
2173 2940 4.883585 CCTGTAAATAAGCTCCAATCAGCA 59.116 41.667 0.00 0.00 42.40 4.41
2182 2950 7.493367 ACTCAGTGTATCCTGTAAATAAGCTC 58.507 38.462 0.00 0.00 34.02 4.09
2184 2952 8.391106 CAAACTCAGTGTATCCTGTAAATAAGC 58.609 37.037 0.00 0.00 34.02 3.09
2201 2969 4.526970 TCTTTGGAGCTTTCAAACTCAGT 58.473 39.130 10.78 0.00 34.48 3.41
2231 2999 0.389817 CAACCATCCTCAACGCGAGA 60.390 55.000 15.93 9.72 45.45 4.04
2243 3011 3.679389 AGTCATGGTGAGAACAACCATC 58.321 45.455 5.12 0.00 41.85 3.51
2853 3622 5.858581 CCTAAACAGCTCTAAAAACATGTGC 59.141 40.000 0.00 0.00 0.00 4.57
2928 3697 1.349688 ACGGAATGCAAGGGACAGTTA 59.650 47.619 0.00 0.00 0.00 2.24
2994 3763 4.525912 ACAGGATGCAAAAATCAGGAAC 57.474 40.909 0.00 0.00 42.53 3.62
3064 3834 9.668497 GTTAACAAAATTACTCAGGGAGACTAT 57.332 33.333 0.00 0.00 33.32 2.12
3197 3975 5.163519 GCCATGCATAGGATTGTAAACTGTT 60.164 40.000 16.46 0.00 0.00 3.16
3274 4052 6.427853 TGAACAGTCATACAAGAAATGGACTG 59.572 38.462 15.68 15.68 37.86 3.51
3310 4090 1.754803 AGTTCCACACAAGAGACGACA 59.245 47.619 0.00 0.00 0.00 4.35
3314 4094 2.365617 TCCAGAGTTCCACACAAGAGAC 59.634 50.000 0.00 0.00 0.00 3.36
3318 4098 3.332919 CTCATCCAGAGTTCCACACAAG 58.667 50.000 0.00 0.00 39.62 3.16
3646 4427 9.892130 AAATTTAACATGTCTACCCAAAAACAA 57.108 25.926 0.00 0.00 0.00 2.83
3674 4455 2.554032 GGTTAAGCTGTGTGCATGACTT 59.446 45.455 0.00 0.00 45.94 3.01
3712 4493 8.341173 CCTGAAAGCATATATTGTCAGAAGAAC 58.659 37.037 6.26 0.00 35.57 3.01
3732 4513 2.151502 TTTGCCACAAGACCCTGAAA 57.848 45.000 0.00 0.00 0.00 2.69
3755 4536 1.826385 AGTAATCAACCACAGCAGCC 58.174 50.000 0.00 0.00 0.00 4.85
3944 4725 3.518634 TTTGCAAGTGGGAGTTGAAAC 57.481 42.857 0.00 0.00 26.09 2.78
3945 4726 4.751767 AATTTGCAAGTGGGAGTTGAAA 57.248 36.364 0.00 0.00 30.18 2.69
3946 4727 4.751767 AAATTTGCAAGTGGGAGTTGAA 57.248 36.364 0.00 0.00 30.18 2.69
3947 4728 4.751767 AAAATTTGCAAGTGGGAGTTGA 57.248 36.364 0.00 0.00 30.18 3.18
3948 4729 4.874966 TGAAAAATTTGCAAGTGGGAGTTG 59.125 37.500 0.00 0.00 0.00 3.16
3949 4730 5.096443 TGAAAAATTTGCAAGTGGGAGTT 57.904 34.783 0.00 0.00 0.00 3.01
3950 4731 4.162131 ACTGAAAAATTTGCAAGTGGGAGT 59.838 37.500 0.00 0.00 0.00 3.85
3969 4751 6.997655 AGATACATCTTCACTCACAAACTGA 58.002 36.000 0.00 0.00 31.97 3.41
4001 4784 1.217001 TGCAAGTATATTCGCCTGCG 58.783 50.000 4.92 4.92 41.35 5.18
4147 4930 4.965119 AACTCACTGTTCTGTTTTGGAC 57.035 40.909 0.00 0.00 32.63 4.02
4332 5115 7.234166 ACTTCATCCCAGTTTTCAATTTGATCT 59.766 33.333 0.00 0.00 0.00 2.75
4427 5210 4.814234 TCTAAACAAGAAACGTGCAGACAT 59.186 37.500 0.00 0.00 0.00 3.06
4507 5304 0.031111 TCAGGCACACCCTAGGCTAT 60.031 55.000 2.05 0.00 44.09 2.97
4571 5368 6.681777 ACCTATCAAAGAACTTGTGATTTGC 58.318 36.000 13.07 0.00 36.34 3.68
4801 5610 6.376864 TGTCTAAATTAACATGGGGATGTGTG 59.623 38.462 0.00 0.00 34.56 3.82
4802 5611 6.489603 TGTCTAAATTAACATGGGGATGTGT 58.510 36.000 0.00 0.00 34.56 3.72
4803 5612 7.428020 CATGTCTAAATTAACATGGGGATGTG 58.572 38.462 15.61 0.00 45.75 3.21
4905 5723 6.128145 CCGTCCACATTGTAATTGTATTCACA 60.128 38.462 0.00 0.00 0.00 3.58
4925 5743 3.821421 AGACTGGAATATTCACCGTCC 57.179 47.619 17.07 0.00 33.64 4.79
4927 5745 6.884832 TCATTTAGACTGGAATATTCACCGT 58.115 36.000 17.07 9.93 0.00 4.83
4974 5792 0.179174 GCCCAGCAACGATTAAACCG 60.179 55.000 0.00 0.00 0.00 4.44
5121 5945 7.721402 AGCCATTATGTTCAACACACTTTTTA 58.279 30.769 0.00 0.00 38.61 1.52
5139 5963 4.212716 AGATACACTCACGGTAGCCATTA 58.787 43.478 0.00 0.00 0.00 1.90
5151 5975 6.367374 TTCCCATACAACAAGATACACTCA 57.633 37.500 0.00 0.00 0.00 3.41
5233 6066 1.845791 TGGTCATAGTGTCCATGCCAT 59.154 47.619 0.00 0.00 30.83 4.40
5241 6074 6.142817 GTCAAAACAACATGGTCATAGTGTC 58.857 40.000 0.00 0.00 0.00 3.67
5258 6093 2.977169 GTGTGTGTGTGTGTGTCAAAAC 59.023 45.455 0.00 0.00 0.00 2.43
5263 6098 1.136085 GTGTGTGTGTGTGTGTGTGTC 60.136 52.381 0.00 0.00 0.00 3.67
5295 6130 1.589803 GCGGAGGGCGTATTACATTT 58.410 50.000 0.00 0.00 0.00 2.32
5306 6141 3.868985 TAATTCGGGGCGGAGGGC 61.869 66.667 0.00 0.00 42.51 5.19
5312 6147 1.734163 AAGACAAGTAATTCGGGGCG 58.266 50.000 0.00 0.00 0.00 6.13
5314 6149 6.598064 ACAAATCTAAGACAAGTAATTCGGGG 59.402 38.462 0.00 0.00 0.00 5.73
5340 6175 6.015027 AGCAGTAAATACAGCCGTATCTAG 57.985 41.667 4.57 0.00 39.22 2.43
5384 6219 8.971073 CCATCCCAAATTACTTGTCTTAGATTT 58.029 33.333 0.00 0.00 32.65 2.17
5385 6220 7.561356 CCCATCCCAAATTACTTGTCTTAGATT 59.439 37.037 0.00 0.00 32.65 2.40
5386 6221 7.062957 CCCATCCCAAATTACTTGTCTTAGAT 58.937 38.462 0.00 0.00 32.65 1.98
5387 6222 6.423182 CCCATCCCAAATTACTTGTCTTAGA 58.577 40.000 0.00 0.00 32.65 2.10
5388 6223 5.594317 CCCCATCCCAAATTACTTGTCTTAG 59.406 44.000 0.00 0.00 32.65 2.18
5389 6224 5.515106 CCCCATCCCAAATTACTTGTCTTA 58.485 41.667 0.00 0.00 32.65 2.10
5390 6225 4.352893 CCCCATCCCAAATTACTTGTCTT 58.647 43.478 0.00 0.00 32.65 3.01
5391 6226 3.309848 CCCCCATCCCAAATTACTTGTCT 60.310 47.826 0.00 0.00 32.65 3.41
5392 6227 3.031013 CCCCCATCCCAAATTACTTGTC 58.969 50.000 0.00 0.00 32.65 3.18
5393 6228 2.385417 ACCCCCATCCCAAATTACTTGT 59.615 45.455 0.00 0.00 32.65 3.16
5394 6229 3.114643 ACCCCCATCCCAAATTACTTG 57.885 47.619 0.00 0.00 34.52 3.16
5395 6230 4.976870 TTACCCCCATCCCAAATTACTT 57.023 40.909 0.00 0.00 0.00 2.24
5396 6231 6.813724 ATATTACCCCCATCCCAAATTACT 57.186 37.500 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.