Multiple sequence alignment - TraesCS3D01G407300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G407300 chr3D 100.000 6706 0 0 1 6706 520712996 520719701 0.000000e+00 12384.0
1 TraesCS3D01G407300 chr3D 97.917 48 1 0 2244 2291 45243183 45243230 4.310000e-12 84.2
2 TraesCS3D01G407300 chr3B 94.221 4257 185 34 924 5140 686336819 686341054 0.000000e+00 6442.0
3 TraesCS3D01G407300 chr3B 85.319 1519 85 49 5248 6706 686341201 686342641 0.000000e+00 1443.0
4 TraesCS3D01G407300 chr3B 89.308 477 29 10 450 911 686335774 686336243 4.510000e-161 579.0
5 TraesCS3D01G407300 chr3B 82.090 536 56 19 408 923 520455051 520455566 8.040000e-114 422.0
6 TraesCS3D01G407300 chr3B 96.825 63 2 0 399 461 686128100 686128162 9.200000e-19 106.0
7 TraesCS3D01G407300 chr3A 96.149 3713 121 11 913 4607 656100204 656103912 0.000000e+00 6045.0
8 TraesCS3D01G407300 chr3A 86.578 2250 131 69 4544 6706 656103913 656106078 0.000000e+00 2324.0
9 TraesCS3D01G407300 chr3A 77.934 213 34 4 194 393 131748453 131748665 3.280000e-23 121.0
10 TraesCS3D01G407300 chr3A 94.231 52 2 1 2242 2292 515889360 515889309 2.010000e-10 78.7
11 TraesCS3D01G407300 chr7B 88.589 999 73 22 1260 2247 624719729 624718761 0.000000e+00 1175.0
12 TraesCS3D01G407300 chr7B 87.859 906 69 18 2332 3220 624718712 624717831 0.000000e+00 1026.0
13 TraesCS3D01G407300 chr7B 91.244 217 19 0 1034 1250 624722954 624722738 5.080000e-76 296.0
14 TraesCS3D01G407300 chr7B 93.434 198 13 0 3216 3413 624712207 624712010 1.830000e-75 294.0
15 TraesCS3D01G407300 chr7B 82.917 240 23 9 5741 5978 624700737 624700514 4.100000e-47 200.0
16 TraesCS3D01G407300 chr7B 79.032 186 20 6 223 396 97678050 97677872 7.110000e-20 110.0
17 TraesCS3D01G407300 chr1A 84.023 532 58 10 408 931 263963983 263964495 2.810000e-133 486.0
18 TraesCS3D01G407300 chr6B 83.088 544 52 19 408 931 79917305 79916782 6.130000e-125 459.0
19 TraesCS3D01G407300 chr7A 84.634 423 53 8 4568 4980 657423358 657422938 1.740000e-110 411.0
20 TraesCS3D01G407300 chr7A 89.634 328 21 5 4261 4576 657423728 657423402 8.100000e-109 405.0
21 TraesCS3D01G407300 chr7A 83.333 174 25 2 5248 5420 657422610 657422440 2.500000e-34 158.0
22 TraesCS3D01G407300 chr7A 81.955 133 5 6 4138 4267 657423928 657423812 1.990000e-15 95.3
23 TraesCS3D01G407300 chr2B 80.462 476 57 24 403 861 106965743 106965287 1.390000e-86 331.0
24 TraesCS3D01G407300 chr2B 96.053 76 3 0 6554 6629 767953446 767953371 2.540000e-24 124.0
25 TraesCS3D01G407300 chr2B 86.364 110 14 1 280 388 454029341 454029450 1.180000e-22 119.0
26 TraesCS3D01G407300 chr2B 96.078 51 1 1 2243 2292 136176055 136176105 1.550000e-11 82.4
27 TraesCS3D01G407300 chrUn 79.221 539 63 21 410 931 333631582 333632088 5.010000e-86 329.0
28 TraesCS3D01G407300 chr4A 79.221 539 63 21 410 931 689574805 689575311 5.010000e-86 329.0
29 TraesCS3D01G407300 chr6A 78.884 502 62 27 447 931 162965248 162965722 3.930000e-77 300.0
30 TraesCS3D01G407300 chr6A 75.385 260 45 9 150 393 53582435 53582691 2.560000e-19 108.0
31 TraesCS3D01G407300 chr6A 89.474 57 5 1 2230 2286 443424799 443424744 3.360000e-08 71.3
32 TraesCS3D01G407300 chr5B 90.222 225 22 0 408 632 706151306 706151530 1.830000e-75 294.0
33 TraesCS3D01G407300 chr5B 83.544 237 17 9 711 931 706151558 706151788 1.140000e-47 202.0
34 TraesCS3D01G407300 chr5B 89.474 114 11 1 280 392 759043 758930 7.010000e-30 143.0
35 TraesCS3D01G407300 chr5B 88.596 114 12 1 280 392 651230963 651231076 3.260000e-28 137.0
36 TraesCS3D01G407300 chr5B 76.303 211 37 4 203 400 321212772 321212562 4.280000e-17 100.0
37 TraesCS3D01G407300 chr7D 78.891 469 61 23 480 931 501839726 501840173 3.960000e-72 283.0
38 TraesCS3D01G407300 chr7D 89.175 194 19 2 6437 6629 549768596 549768788 2.420000e-59 241.0
39 TraesCS3D01G407300 chr1D 85.597 243 14 5 408 650 432229102 432228881 1.120000e-57 235.0
40 TraesCS3D01G407300 chr1D 97.917 48 1 0 875 922 432228880 432228833 4.310000e-12 84.2
41 TraesCS3D01G407300 chr5D 78.683 319 32 18 630 931 465981557 465981258 5.340000e-41 180.0
42 TraesCS3D01G407300 chr5D 97.917 48 1 0 2244 2291 458811245 458811292 4.310000e-12 84.2
43 TraesCS3D01G407300 chr6D 86.301 146 18 2 6485 6629 469343766 469343622 2.500000e-34 158.0
44 TraesCS3D01G407300 chr2A 96.078 51 1 1 2243 2292 84959109 84959159 1.550000e-11 82.4
45 TraesCS3D01G407300 chr2A 96.078 51 1 1 2243 2292 84974330 84974380 1.550000e-11 82.4
46 TraesCS3D01G407300 chr1B 79.762 84 16 1 306 388 587267139 587267222 7.260000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G407300 chr3D 520712996 520719701 6705 False 12384.000000 12384 100.000000 1 6706 1 chr3D.!!$F2 6705
1 TraesCS3D01G407300 chr3B 686335774 686342641 6867 False 2821.333333 6442 89.616000 450 6706 3 chr3B.!!$F3 6256
2 TraesCS3D01G407300 chr3B 520455051 520455566 515 False 422.000000 422 82.090000 408 923 1 chr3B.!!$F1 515
3 TraesCS3D01G407300 chr3A 656100204 656106078 5874 False 4184.500000 6045 91.363500 913 6706 2 chr3A.!!$F2 5793
4 TraesCS3D01G407300 chr7B 624717831 624722954 5123 True 832.333333 1175 89.230667 1034 3220 3 chr7B.!!$R4 2186
5 TraesCS3D01G407300 chr1A 263963983 263964495 512 False 486.000000 486 84.023000 408 931 1 chr1A.!!$F1 523
6 TraesCS3D01G407300 chr6B 79916782 79917305 523 True 459.000000 459 83.088000 408 931 1 chr6B.!!$R1 523
7 TraesCS3D01G407300 chr7A 657422440 657423928 1488 True 267.325000 411 84.889000 4138 5420 4 chr7A.!!$R1 1282
8 TraesCS3D01G407300 chrUn 333631582 333632088 506 False 329.000000 329 79.221000 410 931 1 chrUn.!!$F1 521
9 TraesCS3D01G407300 chr4A 689574805 689575311 506 False 329.000000 329 79.221000 410 931 1 chr4A.!!$F1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 152 0.107508 AGAATGCCATGTCAGACCGG 60.108 55.000 0.00 0.00 0.00 5.28 F
239 240 0.108424 CTGGTCTAGTGGCTGACAGC 60.108 60.000 19.55 19.55 41.46 4.40 F
807 818 0.409876 AGCAGTGGTCTAGTCCAGGA 59.590 55.000 9.12 0.00 38.23 3.86 F
1004 1603 0.672342 GCCCATATTTCAGCAGGCTG 59.328 55.000 14.97 14.97 44.86 4.85 F
1016 1615 0.895530 GCAGGCTGACTACTGTACCA 59.104 55.000 20.86 0.00 37.07 3.25 F
1607 5214 1.219124 CAGTCACCATCCAGTCGGG 59.781 63.158 0.00 0.00 38.37 5.14 F
1660 5267 1.603455 CCTTGGCGATGTGGGTTGT 60.603 57.895 0.00 0.00 0.00 3.32 F
3469 7098 0.890996 GAACCCACCAGGCTGTTCAG 60.891 60.000 14.43 0.00 40.58 3.02 F
4718 8528 0.394938 TAGCTCAAAGGAACGCCACA 59.605 50.000 0.00 0.00 36.29 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1016 1615 0.039326 AGGAATCAGCTGGCTTTGCT 59.961 50.000 15.13 12.74 42.06 3.91 R
1224 1823 0.257616 CGAGGAAGGAGAGGAGGACT 59.742 60.000 0.00 0.00 0.00 3.85 R
1729 5336 0.473755 TTCATCCCATCCCCATCACG 59.526 55.000 0.00 0.00 0.00 4.35 R
2593 6216 3.119319 TCCCATACTAAGGACATTGCCA 58.881 45.455 0.00 0.00 0.00 4.92 R
2796 6420 3.510388 TTTGATCGTCCTGTAGCTGAG 57.490 47.619 0.00 0.00 0.00 3.35 R
3469 7098 0.383949 TGCGCCTTCTTTGAACCAAC 59.616 50.000 4.18 0.00 0.00 3.77 R
3525 7154 6.628185 AGGCAAAGACAAAAGATGATGAATC 58.372 36.000 0.00 0.00 35.29 2.52 R
5062 8893 1.815003 ACAATGCTACAGCCTTGCTTC 59.185 47.619 16.19 0.00 46.12 3.86 R
6036 10038 0.320508 GAGTCTTGGGTGGGTCGTTC 60.321 60.000 0.00 0.00 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.970662 TCTGCAGCCATTTAAGCTTTAG 57.029 40.909 9.47 0.00 38.95 1.85
23 24 3.696051 TCTGCAGCCATTTAAGCTTTAGG 59.304 43.478 9.47 2.94 38.95 2.69
24 25 3.430453 TGCAGCCATTTAAGCTTTAGGT 58.570 40.909 3.20 0.00 38.95 3.08
25 26 3.193267 TGCAGCCATTTAAGCTTTAGGTG 59.807 43.478 3.20 6.50 38.95 4.00
26 27 3.774066 CAGCCATTTAAGCTTTAGGTGC 58.226 45.455 3.20 2.93 38.95 5.01
27 28 3.193267 CAGCCATTTAAGCTTTAGGTGCA 59.807 43.478 3.20 0.00 38.95 4.57
28 29 4.026052 AGCCATTTAAGCTTTAGGTGCAT 58.974 39.130 3.20 0.00 37.24 3.96
29 30 4.098501 AGCCATTTAAGCTTTAGGTGCATC 59.901 41.667 3.20 0.00 37.24 3.91
30 31 4.142182 GCCATTTAAGCTTTAGGTGCATCA 60.142 41.667 3.20 0.00 0.00 3.07
31 32 5.343249 CCATTTAAGCTTTAGGTGCATCAC 58.657 41.667 3.20 0.00 0.00 3.06
32 33 5.126061 CCATTTAAGCTTTAGGTGCATCACT 59.874 40.000 3.20 0.00 34.40 3.41
33 34 5.627499 TTTAAGCTTTAGGTGCATCACTG 57.373 39.130 3.20 0.00 34.40 3.66
49 50 6.634805 GCATCACTGCTACATACATATAGGT 58.365 40.000 0.00 0.00 45.32 3.08
50 51 7.099764 GCATCACTGCTACATACATATAGGTT 58.900 38.462 0.00 0.00 45.32 3.50
51 52 7.604164 GCATCACTGCTACATACATATAGGTTT 59.396 37.037 0.00 0.00 45.32 3.27
52 53 8.929746 CATCACTGCTACATACATATAGGTTTG 58.070 37.037 6.45 6.45 0.00 2.93
53 54 6.929049 TCACTGCTACATACATATAGGTTTGC 59.071 38.462 7.72 0.00 0.00 3.68
54 55 6.705825 CACTGCTACATACATATAGGTTTGCA 59.294 38.462 7.72 3.03 34.52 4.08
55 56 7.388776 CACTGCTACATACATATAGGTTTGCAT 59.611 37.037 7.72 0.00 34.90 3.96
56 57 7.604164 ACTGCTACATACATATAGGTTTGCATC 59.396 37.037 7.72 0.00 34.90 3.91
57 58 7.449247 TGCTACATACATATAGGTTTGCATCA 58.551 34.615 7.72 1.67 32.41 3.07
58 59 8.102676 TGCTACATACATATAGGTTTGCATCAT 58.897 33.333 7.72 0.00 32.41 2.45
59 60 8.950210 GCTACATACATATAGGTTTGCATCATT 58.050 33.333 7.72 0.00 0.00 2.57
76 77 5.686834 CATCATTGCAGATTCGATACTTGG 58.313 41.667 0.00 0.00 0.00 3.61
77 78 4.769688 TCATTGCAGATTCGATACTTGGT 58.230 39.130 0.00 0.00 0.00 3.67
78 79 4.811024 TCATTGCAGATTCGATACTTGGTC 59.189 41.667 0.00 0.00 0.00 4.02
79 80 2.809446 TGCAGATTCGATACTTGGTCG 58.191 47.619 0.00 0.00 40.30 4.79
80 81 2.165641 TGCAGATTCGATACTTGGTCGT 59.834 45.455 0.00 0.00 39.91 4.34
81 82 3.187700 GCAGATTCGATACTTGGTCGTT 58.812 45.455 0.00 0.00 39.91 3.85
82 83 4.142337 TGCAGATTCGATACTTGGTCGTTA 60.142 41.667 0.00 0.00 39.91 3.18
83 84 4.206609 GCAGATTCGATACTTGGTCGTTAC 59.793 45.833 0.00 0.00 39.91 2.50
84 85 4.738740 CAGATTCGATACTTGGTCGTTACC 59.261 45.833 0.00 0.00 46.98 2.85
85 86 4.643784 AGATTCGATACTTGGTCGTTACCT 59.356 41.667 0.00 0.00 46.91 3.08
86 87 4.789012 TTCGATACTTGGTCGTTACCTT 57.211 40.909 0.00 0.00 46.91 3.50
87 88 4.789012 TCGATACTTGGTCGTTACCTTT 57.211 40.909 0.00 0.00 46.91 3.11
88 89 5.138125 TCGATACTTGGTCGTTACCTTTT 57.862 39.130 0.00 0.00 46.91 2.27
89 90 5.540911 TCGATACTTGGTCGTTACCTTTTT 58.459 37.500 0.00 0.00 46.91 1.94
90 91 5.634859 TCGATACTTGGTCGTTACCTTTTTC 59.365 40.000 0.00 0.00 46.91 2.29
91 92 5.163923 CGATACTTGGTCGTTACCTTTTTCC 60.164 44.000 0.00 0.00 46.91 3.13
92 93 2.874086 ACTTGGTCGTTACCTTTTTCCG 59.126 45.455 0.00 0.00 46.91 4.30
93 94 2.618442 TGGTCGTTACCTTTTTCCGT 57.382 45.000 0.00 0.00 46.91 4.69
94 95 2.916640 TGGTCGTTACCTTTTTCCGTT 58.083 42.857 0.00 0.00 46.91 4.44
95 96 3.277715 TGGTCGTTACCTTTTTCCGTTT 58.722 40.909 0.00 0.00 46.91 3.60
96 97 4.446371 TGGTCGTTACCTTTTTCCGTTTA 58.554 39.130 0.00 0.00 46.91 2.01
97 98 4.878397 TGGTCGTTACCTTTTTCCGTTTAA 59.122 37.500 0.00 0.00 46.91 1.52
98 99 5.530543 TGGTCGTTACCTTTTTCCGTTTAAT 59.469 36.000 0.00 0.00 46.91 1.40
99 100 6.039159 TGGTCGTTACCTTTTTCCGTTTAATT 59.961 34.615 0.00 0.00 46.91 1.40
100 101 6.917477 GGTCGTTACCTTTTTCCGTTTAATTT 59.083 34.615 0.00 0.00 43.08 1.82
101 102 7.434897 GGTCGTTACCTTTTTCCGTTTAATTTT 59.565 33.333 0.00 0.00 43.08 1.82
102 103 9.444534 GTCGTTACCTTTTTCCGTTTAATTTTA 57.555 29.630 0.00 0.00 0.00 1.52
103 104 9.444534 TCGTTACCTTTTTCCGTTTAATTTTAC 57.555 29.630 0.00 0.00 0.00 2.01
104 105 9.230932 CGTTACCTTTTTCCGTTTAATTTTACA 57.769 29.630 0.00 0.00 0.00 2.41
107 108 8.078959 ACCTTTTTCCGTTTAATTTTACATGC 57.921 30.769 0.00 0.00 0.00 4.06
108 109 7.095982 ACCTTTTTCCGTTTAATTTTACATGCG 60.096 33.333 0.00 0.00 0.00 4.73
109 110 6.692232 TTTTCCGTTTAATTTTACATGCGG 57.308 33.333 0.00 0.00 39.33 5.69
110 111 4.358494 TCCGTTTAATTTTACATGCGGG 57.642 40.909 0.00 0.00 38.60 6.13
111 112 4.008330 TCCGTTTAATTTTACATGCGGGA 58.992 39.130 0.00 0.00 38.60 5.14
112 113 4.099824 CCGTTTAATTTTACATGCGGGAC 58.900 43.478 0.00 0.00 34.97 4.46
113 114 4.099824 CGTTTAATTTTACATGCGGGACC 58.900 43.478 0.00 0.00 0.00 4.46
114 115 4.426416 GTTTAATTTTACATGCGGGACCC 58.574 43.478 0.00 0.00 0.00 4.46
115 116 2.525105 AATTTTACATGCGGGACCCT 57.475 45.000 9.41 0.00 0.00 4.34
116 117 2.052782 ATTTTACATGCGGGACCCTC 57.947 50.000 9.41 0.00 0.00 4.30
117 118 0.988832 TTTTACATGCGGGACCCTCT 59.011 50.000 9.41 0.00 0.00 3.69
118 119 0.251916 TTTACATGCGGGACCCTCTG 59.748 55.000 9.41 5.66 0.00 3.35
119 120 1.622607 TTACATGCGGGACCCTCTGG 61.623 60.000 9.41 0.00 37.80 3.86
134 135 2.712709 CTCTGGTCGTAGAGGTGAAGA 58.287 52.381 0.00 0.00 40.38 2.87
135 136 3.082548 CTCTGGTCGTAGAGGTGAAGAA 58.917 50.000 0.00 0.00 40.38 2.52
136 137 3.697045 CTCTGGTCGTAGAGGTGAAGAAT 59.303 47.826 0.00 0.00 40.38 2.40
137 138 3.444034 TCTGGTCGTAGAGGTGAAGAATG 59.556 47.826 0.00 0.00 36.95 2.67
138 139 2.094182 TGGTCGTAGAGGTGAAGAATGC 60.094 50.000 0.00 0.00 36.95 3.56
139 140 2.541556 GTCGTAGAGGTGAAGAATGCC 58.458 52.381 0.00 0.00 36.95 4.40
140 141 2.094182 GTCGTAGAGGTGAAGAATGCCA 60.094 50.000 0.00 0.00 36.95 4.92
141 142 2.766263 TCGTAGAGGTGAAGAATGCCAT 59.234 45.455 0.00 0.00 0.00 4.40
142 143 2.868583 CGTAGAGGTGAAGAATGCCATG 59.131 50.000 0.00 0.00 0.00 3.66
143 144 3.679917 CGTAGAGGTGAAGAATGCCATGT 60.680 47.826 0.00 0.00 0.00 3.21
144 145 2.996631 AGAGGTGAAGAATGCCATGTC 58.003 47.619 0.00 0.00 0.00 3.06
145 146 2.306805 AGAGGTGAAGAATGCCATGTCA 59.693 45.455 0.00 0.00 0.00 3.58
146 147 2.681848 GAGGTGAAGAATGCCATGTCAG 59.318 50.000 0.00 0.00 0.00 3.51
147 148 2.306805 AGGTGAAGAATGCCATGTCAGA 59.693 45.455 0.00 0.00 0.00 3.27
148 149 2.421424 GGTGAAGAATGCCATGTCAGAC 59.579 50.000 0.00 0.00 0.00 3.51
149 150 2.421424 GTGAAGAATGCCATGTCAGACC 59.579 50.000 0.00 0.00 0.00 3.85
150 151 1.667724 GAAGAATGCCATGTCAGACCG 59.332 52.381 0.00 0.00 0.00 4.79
151 152 0.107508 AGAATGCCATGTCAGACCGG 60.108 55.000 0.00 0.00 0.00 5.28
152 153 1.077501 AATGCCATGTCAGACCGGG 60.078 57.895 6.32 5.87 0.00 5.73
153 154 1.852157 AATGCCATGTCAGACCGGGT 61.852 55.000 6.32 0.00 0.00 5.28
154 155 2.125106 GCCATGTCAGACCGGGTC 60.125 66.667 19.61 19.61 0.00 4.46
155 156 2.584608 CCATGTCAGACCGGGTCC 59.415 66.667 23.21 9.13 32.18 4.46
156 157 1.990060 CCATGTCAGACCGGGTCCT 60.990 63.158 23.21 8.32 32.18 3.85
157 158 1.553690 CCATGTCAGACCGGGTCCTT 61.554 60.000 23.21 3.09 32.18 3.36
158 159 0.324943 CATGTCAGACCGGGTCCTTT 59.675 55.000 23.21 2.29 32.18 3.11
159 160 1.064825 ATGTCAGACCGGGTCCTTTT 58.935 50.000 23.21 1.89 32.18 2.27
160 161 0.841289 TGTCAGACCGGGTCCTTTTT 59.159 50.000 23.21 1.48 32.18 1.94
161 162 1.235724 GTCAGACCGGGTCCTTTTTG 58.764 55.000 23.21 14.42 32.18 2.44
162 163 0.841289 TCAGACCGGGTCCTTTTTGT 59.159 50.000 23.21 0.00 32.18 2.83
163 164 0.951558 CAGACCGGGTCCTTTTTGTG 59.048 55.000 23.21 9.54 32.18 3.33
164 165 0.841289 AGACCGGGTCCTTTTTGTGA 59.159 50.000 23.21 0.00 32.18 3.58
165 166 1.213430 AGACCGGGTCCTTTTTGTGAA 59.787 47.619 23.21 0.00 32.18 3.18
166 167 2.025898 GACCGGGTCCTTTTTGTGAAA 58.974 47.619 16.55 0.00 0.00 2.69
167 168 2.626266 GACCGGGTCCTTTTTGTGAAAT 59.374 45.455 16.55 0.00 0.00 2.17
168 169 3.822167 GACCGGGTCCTTTTTGTGAAATA 59.178 43.478 16.55 0.00 0.00 1.40
169 170 4.412843 ACCGGGTCCTTTTTGTGAAATAT 58.587 39.130 6.32 0.00 0.00 1.28
170 171 5.572252 ACCGGGTCCTTTTTGTGAAATATA 58.428 37.500 6.32 0.00 0.00 0.86
171 172 6.192044 ACCGGGTCCTTTTTGTGAAATATAT 58.808 36.000 6.32 0.00 0.00 0.86
172 173 7.348033 ACCGGGTCCTTTTTGTGAAATATATA 58.652 34.615 6.32 0.00 0.00 0.86
173 174 8.002459 ACCGGGTCCTTTTTGTGAAATATATAT 58.998 33.333 6.32 0.00 0.00 0.86
174 175 9.509956 CCGGGTCCTTTTTGTGAAATATATATA 57.490 33.333 0.00 0.00 0.00 0.86
184 185 9.938280 TTTGTGAAATATATATACTTCGAGGGG 57.062 33.333 8.88 0.00 0.00 4.79
185 186 8.074613 TGTGAAATATATATACTTCGAGGGGG 57.925 38.462 8.88 0.00 0.00 5.40
186 187 7.897030 TGTGAAATATATATACTTCGAGGGGGA 59.103 37.037 8.88 0.00 0.00 4.81
187 188 8.755977 GTGAAATATATATACTTCGAGGGGGAA 58.244 37.037 8.88 0.00 0.00 3.97
188 189 9.328975 TGAAATATATATACTTCGAGGGGGAAA 57.671 33.333 8.88 0.00 0.00 3.13
193 194 4.855298 ATACTTCGAGGGGGAAATTTGA 57.145 40.909 0.00 0.00 0.00 2.69
194 195 3.518992 ACTTCGAGGGGGAAATTTGAA 57.481 42.857 0.00 0.00 0.00 2.69
195 196 3.839778 ACTTCGAGGGGGAAATTTGAAA 58.160 40.909 0.00 0.00 0.00 2.69
196 197 4.219919 ACTTCGAGGGGGAAATTTGAAAA 58.780 39.130 0.00 0.00 0.00 2.29
197 198 4.038763 ACTTCGAGGGGGAAATTTGAAAAC 59.961 41.667 0.00 0.00 0.00 2.43
198 199 3.567397 TCGAGGGGGAAATTTGAAAACA 58.433 40.909 0.00 0.00 0.00 2.83
199 200 4.156477 TCGAGGGGGAAATTTGAAAACAT 58.844 39.130 0.00 0.00 0.00 2.71
200 201 4.219725 TCGAGGGGGAAATTTGAAAACATC 59.780 41.667 0.00 0.00 0.00 3.06
201 202 4.021544 CGAGGGGGAAATTTGAAAACATCA 60.022 41.667 0.00 0.00 35.85 3.07
202 203 5.482006 GAGGGGGAAATTTGAAAACATCAG 58.518 41.667 0.00 0.00 39.77 2.90
203 204 4.286808 AGGGGGAAATTTGAAAACATCAGG 59.713 41.667 0.00 0.00 39.77 3.86
204 205 4.002982 GGGGAAATTTGAAAACATCAGGC 58.997 43.478 0.00 0.00 39.77 4.85
205 206 4.002982 GGGAAATTTGAAAACATCAGGCC 58.997 43.478 0.00 0.00 39.77 5.19
206 207 4.504689 GGGAAATTTGAAAACATCAGGCCA 60.505 41.667 5.01 0.00 39.77 5.36
207 208 4.452114 GGAAATTTGAAAACATCAGGCCAC 59.548 41.667 5.01 0.00 39.77 5.01
208 209 4.686191 AATTTGAAAACATCAGGCCACA 57.314 36.364 5.01 0.00 39.77 4.17
209 210 3.451141 TTTGAAAACATCAGGCCACAC 57.549 42.857 5.01 0.00 39.77 3.82
210 211 2.064434 TGAAAACATCAGGCCACACA 57.936 45.000 5.01 0.00 33.04 3.72
211 212 1.680735 TGAAAACATCAGGCCACACAC 59.319 47.619 5.01 0.00 33.04 3.82
212 213 1.000274 GAAAACATCAGGCCACACACC 60.000 52.381 5.01 0.00 0.00 4.16
213 214 0.827507 AAACATCAGGCCACACACCC 60.828 55.000 5.01 0.00 0.00 4.61
214 215 2.361610 CATCAGGCCACACACCCC 60.362 66.667 5.01 0.00 0.00 4.95
215 216 2.532715 ATCAGGCCACACACCCCT 60.533 61.111 5.01 0.00 0.00 4.79
216 217 2.162906 ATCAGGCCACACACCCCTT 61.163 57.895 5.01 0.00 0.00 3.95
217 218 2.142292 ATCAGGCCACACACCCCTTC 62.142 60.000 5.01 0.00 0.00 3.46
218 219 2.450502 AGGCCACACACCCCTTCT 60.451 61.111 5.01 0.00 0.00 2.85
219 220 2.034221 GGCCACACACCCCTTCTC 59.966 66.667 0.00 0.00 0.00 2.87
220 221 2.034221 GCCACACACCCCTTCTCC 59.966 66.667 0.00 0.00 0.00 3.71
221 222 2.529744 GCCACACACCCCTTCTCCT 61.530 63.158 0.00 0.00 0.00 3.69
222 223 1.376466 CCACACACCCCTTCTCCTG 59.624 63.158 0.00 0.00 0.00 3.86
223 224 1.376466 CACACACCCCTTCTCCTGG 59.624 63.158 0.00 0.00 0.00 4.45
224 225 1.073706 ACACACCCCTTCTCCTGGT 60.074 57.895 0.00 0.00 0.00 4.00
225 226 1.128188 ACACACCCCTTCTCCTGGTC 61.128 60.000 0.00 0.00 0.00 4.02
226 227 0.838122 CACACCCCTTCTCCTGGTCT 60.838 60.000 0.00 0.00 0.00 3.85
227 228 0.790993 ACACCCCTTCTCCTGGTCTA 59.209 55.000 0.00 0.00 0.00 2.59
228 229 1.273324 ACACCCCTTCTCCTGGTCTAG 60.273 57.143 0.00 0.00 0.00 2.43
229 230 1.094269 ACCCCTTCTCCTGGTCTAGT 58.906 55.000 0.00 0.00 0.00 2.57
230 231 1.273324 ACCCCTTCTCCTGGTCTAGTG 60.273 57.143 0.00 0.00 0.00 2.74
231 232 1.490574 CCCTTCTCCTGGTCTAGTGG 58.509 60.000 0.00 0.00 0.00 4.00
232 233 0.827368 CCTTCTCCTGGTCTAGTGGC 59.173 60.000 0.00 0.00 0.00 5.01
233 234 1.621072 CCTTCTCCTGGTCTAGTGGCT 60.621 57.143 0.00 0.00 0.00 4.75
234 235 1.480137 CTTCTCCTGGTCTAGTGGCTG 59.520 57.143 0.00 0.00 0.00 4.85
235 236 0.704664 TCTCCTGGTCTAGTGGCTGA 59.295 55.000 0.00 0.00 0.00 4.26
236 237 0.820871 CTCCTGGTCTAGTGGCTGAC 59.179 60.000 0.00 0.00 0.00 3.51
237 238 0.114364 TCCTGGTCTAGTGGCTGACA 59.886 55.000 0.00 0.00 35.11 3.58
238 239 0.534412 CCTGGTCTAGTGGCTGACAG 59.466 60.000 0.00 0.00 35.11 3.51
239 240 0.108424 CTGGTCTAGTGGCTGACAGC 60.108 60.000 19.55 19.55 41.46 4.40
240 241 1.153745 GGTCTAGTGGCTGACAGCG 60.154 63.158 20.82 7.13 43.62 5.18
241 242 1.153745 GTCTAGTGGCTGACAGCGG 60.154 63.158 20.82 8.62 43.62 5.52
242 243 2.510238 CTAGTGGCTGACAGCGGC 60.510 66.667 20.82 15.26 43.62 6.53
260 261 4.514577 CCCCACGCGCCTAGTCAG 62.515 72.222 5.73 0.00 0.00 3.51
262 263 4.435436 CCACGCGCCTAGTCAGCA 62.435 66.667 5.73 0.00 0.00 4.41
263 264 3.181967 CACGCGCCTAGTCAGCAC 61.182 66.667 5.73 0.00 0.00 4.40
264 265 3.680786 ACGCGCCTAGTCAGCACA 61.681 61.111 5.73 0.00 0.00 4.57
265 266 2.882777 CGCGCCTAGTCAGCACAG 60.883 66.667 0.00 0.00 0.00 3.66
266 267 2.573869 GCGCCTAGTCAGCACAGA 59.426 61.111 0.00 0.00 0.00 3.41
267 268 1.142748 GCGCCTAGTCAGCACAGAT 59.857 57.895 0.00 0.00 0.00 2.90
268 269 0.460987 GCGCCTAGTCAGCACAGATT 60.461 55.000 0.00 0.00 0.00 2.40
269 270 2.009042 GCGCCTAGTCAGCACAGATTT 61.009 52.381 0.00 0.00 0.00 2.17
270 271 2.350522 CGCCTAGTCAGCACAGATTTT 58.649 47.619 0.00 0.00 0.00 1.82
271 272 2.094894 CGCCTAGTCAGCACAGATTTTG 59.905 50.000 0.00 0.00 0.00 2.44
272 273 3.077359 GCCTAGTCAGCACAGATTTTGT 58.923 45.455 0.00 0.00 41.94 2.83
273 274 4.253685 GCCTAGTCAGCACAGATTTTGTA 58.746 43.478 0.00 0.00 38.16 2.41
274 275 4.878397 GCCTAGTCAGCACAGATTTTGTAT 59.122 41.667 0.00 0.00 38.16 2.29
275 276 6.049149 GCCTAGTCAGCACAGATTTTGTATA 58.951 40.000 0.00 0.00 38.16 1.47
276 277 6.018669 GCCTAGTCAGCACAGATTTTGTATAC 60.019 42.308 0.00 0.00 38.16 1.47
277 278 7.041721 CCTAGTCAGCACAGATTTTGTATACA 58.958 38.462 0.08 0.08 38.16 2.29
278 279 6.974932 AGTCAGCACAGATTTTGTATACAG 57.025 37.500 5.56 0.00 38.16 2.74
279 280 6.701340 AGTCAGCACAGATTTTGTATACAGA 58.299 36.000 5.56 0.00 38.16 3.41
280 281 6.591834 AGTCAGCACAGATTTTGTATACAGAC 59.408 38.462 5.56 5.66 38.16 3.51
281 282 6.591834 GTCAGCACAGATTTTGTATACAGACT 59.408 38.462 5.56 0.00 38.16 3.24
282 283 6.591448 TCAGCACAGATTTTGTATACAGACTG 59.409 38.462 19.27 19.27 38.16 3.51
283 284 6.369890 CAGCACAGATTTTGTATACAGACTGT 59.630 38.462 13.68 13.68 38.16 3.55
284 285 7.545615 CAGCACAGATTTTGTATACAGACTGTA 59.454 37.037 17.43 17.43 38.16 2.74
285 286 8.260818 AGCACAGATTTTGTATACAGACTGTAT 58.739 33.333 26.93 26.93 44.89 2.29
286 287 8.883731 GCACAGATTTTGTATACAGACTGTATT 58.116 33.333 28.45 12.99 42.91 1.89
293 294 9.695526 TTTTGTATACAGACTGTATTTGTACGT 57.304 29.630 28.45 9.38 40.40 3.57
294 295 8.677871 TTGTATACAGACTGTATTTGTACGTG 57.322 34.615 28.45 0.00 40.40 4.49
295 296 7.252708 TGTATACAGACTGTATTTGTACGTGG 58.747 38.462 28.45 0.00 40.40 4.94
296 297 4.859304 ACAGACTGTATTTGTACGTGGA 57.141 40.909 6.24 0.00 0.00 4.02
297 298 5.204409 ACAGACTGTATTTGTACGTGGAA 57.796 39.130 6.24 0.00 0.00 3.53
298 299 5.227908 ACAGACTGTATTTGTACGTGGAAG 58.772 41.667 6.24 0.00 0.00 3.46
299 300 5.221382 ACAGACTGTATTTGTACGTGGAAGT 60.221 40.000 6.24 0.00 0.00 3.01
300 301 6.016024 ACAGACTGTATTTGTACGTGGAAGTA 60.016 38.462 6.24 0.00 0.00 2.24
301 302 6.864685 CAGACTGTATTTGTACGTGGAAGTAA 59.135 38.462 0.00 0.00 0.00 2.24
302 303 7.383029 CAGACTGTATTTGTACGTGGAAGTAAA 59.617 37.037 0.00 0.00 0.00 2.01
303 304 7.597743 AGACTGTATTTGTACGTGGAAGTAAAG 59.402 37.037 0.00 0.00 0.00 1.85
304 305 7.212274 ACTGTATTTGTACGTGGAAGTAAAGT 58.788 34.615 0.00 0.00 0.00 2.66
305 306 7.712205 ACTGTATTTGTACGTGGAAGTAAAGTT 59.288 33.333 0.00 0.00 0.00 2.66
306 307 8.436046 TGTATTTGTACGTGGAAGTAAAGTTT 57.564 30.769 0.00 0.00 0.00 2.66
307 308 8.891720 TGTATTTGTACGTGGAAGTAAAGTTTT 58.108 29.630 0.00 0.00 0.00 2.43
308 309 9.720667 GTATTTGTACGTGGAAGTAAAGTTTTT 57.279 29.630 0.00 0.00 0.00 1.94
309 310 8.623310 ATTTGTACGTGGAAGTAAAGTTTTTG 57.377 30.769 0.00 0.00 0.00 2.44
310 311 5.571277 TGTACGTGGAAGTAAAGTTTTTGC 58.429 37.500 0.00 0.00 0.00 3.68
311 312 4.705337 ACGTGGAAGTAAAGTTTTTGCA 57.295 36.364 0.00 0.00 0.00 4.08
312 313 5.257082 ACGTGGAAGTAAAGTTTTTGCAT 57.743 34.783 0.00 0.00 0.00 3.96
313 314 5.278604 ACGTGGAAGTAAAGTTTTTGCATC 58.721 37.500 0.00 0.00 0.00 3.91
314 315 5.163602 ACGTGGAAGTAAAGTTTTTGCATCA 60.164 36.000 0.00 0.00 0.00 3.07
315 316 5.920273 CGTGGAAGTAAAGTTTTTGCATCAT 59.080 36.000 0.00 0.00 0.00 2.45
316 317 6.420604 CGTGGAAGTAAAGTTTTTGCATCATT 59.579 34.615 0.00 0.00 0.00 2.57
317 318 7.042791 CGTGGAAGTAAAGTTTTTGCATCATTT 60.043 33.333 0.00 0.00 0.00 2.32
318 319 8.275632 GTGGAAGTAAAGTTTTTGCATCATTTC 58.724 33.333 0.00 0.00 0.00 2.17
319 320 7.984050 TGGAAGTAAAGTTTTTGCATCATTTCA 59.016 29.630 0.00 0.00 0.00 2.69
320 321 8.825745 GGAAGTAAAGTTTTTGCATCATTTCAA 58.174 29.630 0.00 0.00 0.00 2.69
323 324 9.328845 AGTAAAGTTTTTGCATCATTTCAATGT 57.671 25.926 0.00 0.00 37.65 2.71
326 327 8.659925 AAGTTTTTGCATCATTTCAATGTACA 57.340 26.923 0.00 0.00 37.65 2.90
327 328 8.075593 AGTTTTTGCATCATTTCAATGTACAC 57.924 30.769 0.00 0.00 37.65 2.90
328 329 7.171337 AGTTTTTGCATCATTTCAATGTACACC 59.829 33.333 0.00 0.00 37.65 4.16
329 330 4.354071 TGCATCATTTCAATGTACACCG 57.646 40.909 0.00 0.00 37.65 4.94
330 331 3.108144 GCATCATTTCAATGTACACCGC 58.892 45.455 0.00 0.00 37.65 5.68
331 332 3.427368 GCATCATTTCAATGTACACCGCA 60.427 43.478 0.00 0.00 37.65 5.69
332 333 4.731720 CATCATTTCAATGTACACCGCAA 58.268 39.130 0.00 0.00 37.65 4.85
333 334 5.342433 CATCATTTCAATGTACACCGCAAT 58.658 37.500 0.00 0.00 37.65 3.56
334 335 5.384063 TCATTTCAATGTACACCGCAATT 57.616 34.783 0.00 0.00 37.65 2.32
335 336 5.777802 TCATTTCAATGTACACCGCAATTT 58.222 33.333 0.00 0.00 37.65 1.82
336 337 5.861251 TCATTTCAATGTACACCGCAATTTC 59.139 36.000 0.00 0.00 37.65 2.17
337 338 5.446143 TTTCAATGTACACCGCAATTTCT 57.554 34.783 0.00 0.00 0.00 2.52
338 339 6.561737 TTTCAATGTACACCGCAATTTCTA 57.438 33.333 0.00 0.00 0.00 2.10
339 340 5.794687 TCAATGTACACCGCAATTTCTAG 57.205 39.130 0.00 0.00 0.00 2.43
340 341 4.094294 TCAATGTACACCGCAATTTCTAGC 59.906 41.667 0.00 0.00 0.00 3.42
341 342 3.046968 TGTACACCGCAATTTCTAGCA 57.953 42.857 0.00 0.00 0.00 3.49
342 343 3.605634 TGTACACCGCAATTTCTAGCAT 58.394 40.909 0.00 0.00 0.00 3.79
343 344 3.621268 TGTACACCGCAATTTCTAGCATC 59.379 43.478 0.00 0.00 0.00 3.91
344 345 2.710377 ACACCGCAATTTCTAGCATCA 58.290 42.857 0.00 0.00 0.00 3.07
345 346 3.081061 ACACCGCAATTTCTAGCATCAA 58.919 40.909 0.00 0.00 0.00 2.57
346 347 3.505680 ACACCGCAATTTCTAGCATCAAA 59.494 39.130 0.00 0.00 0.00 2.69
347 348 4.100529 CACCGCAATTTCTAGCATCAAAG 58.899 43.478 0.00 0.00 0.00 2.77
348 349 3.758554 ACCGCAATTTCTAGCATCAAAGT 59.241 39.130 0.00 0.00 0.00 2.66
349 350 4.100529 CCGCAATTTCTAGCATCAAAGTG 58.899 43.478 0.00 0.00 32.13 3.16
350 351 4.142622 CCGCAATTTCTAGCATCAAAGTGA 60.143 41.667 6.34 0.00 30.84 3.41
351 352 4.790140 CGCAATTTCTAGCATCAAAGTGAC 59.210 41.667 6.34 0.00 30.84 3.67
352 353 5.098211 GCAATTTCTAGCATCAAAGTGACC 58.902 41.667 6.34 0.00 30.84 4.02
353 354 5.327091 CAATTTCTAGCATCAAAGTGACCG 58.673 41.667 0.00 0.00 30.84 4.79
354 355 2.010145 TCTAGCATCAAAGTGACCGC 57.990 50.000 0.00 0.00 0.00 5.68
355 356 1.550524 TCTAGCATCAAAGTGACCGCT 59.449 47.619 8.54 8.54 40.35 5.52
356 357 2.028112 TCTAGCATCAAAGTGACCGCTT 60.028 45.455 8.74 0.00 38.77 4.68
357 358 2.472695 AGCATCAAAGTGACCGCTTA 57.527 45.000 0.00 0.00 35.65 3.09
358 359 2.076863 AGCATCAAAGTGACCGCTTAC 58.923 47.619 0.00 0.00 35.65 2.34
359 360 2.076863 GCATCAAAGTGACCGCTTACT 58.923 47.619 0.00 0.00 0.00 2.24
360 361 2.094417 GCATCAAAGTGACCGCTTACTC 59.906 50.000 0.00 0.00 0.00 2.59
361 362 3.325870 CATCAAAGTGACCGCTTACTCA 58.674 45.455 0.00 0.00 0.00 3.41
362 363 3.462483 TCAAAGTGACCGCTTACTCAA 57.538 42.857 0.00 0.00 0.00 3.02
363 364 3.390135 TCAAAGTGACCGCTTACTCAAG 58.610 45.455 0.00 0.00 34.66 3.02
364 365 3.131396 CAAAGTGACCGCTTACTCAAGT 58.869 45.455 0.00 0.00 34.00 3.16
365 366 3.470645 AAGTGACCGCTTACTCAAGTT 57.529 42.857 0.00 0.00 34.00 2.66
366 367 3.027974 AGTGACCGCTTACTCAAGTTC 57.972 47.619 0.00 0.00 34.00 3.01
367 368 2.628657 AGTGACCGCTTACTCAAGTTCT 59.371 45.455 0.00 0.00 34.00 3.01
368 369 3.825014 AGTGACCGCTTACTCAAGTTCTA 59.175 43.478 0.00 0.00 34.00 2.10
369 370 4.082679 AGTGACCGCTTACTCAAGTTCTAG 60.083 45.833 0.00 0.00 34.00 2.43
370 371 3.180613 GACCGCTTACTCAAGTTCTAGC 58.819 50.000 0.00 0.00 34.00 3.42
371 372 2.561419 ACCGCTTACTCAAGTTCTAGCA 59.439 45.455 0.00 0.00 34.00 3.49
372 373 2.924290 CCGCTTACTCAAGTTCTAGCAC 59.076 50.000 0.00 0.00 34.00 4.40
373 374 2.924290 CGCTTACTCAAGTTCTAGCACC 59.076 50.000 0.00 0.00 34.00 5.01
374 375 3.614150 CGCTTACTCAAGTTCTAGCACCA 60.614 47.826 0.00 0.00 34.00 4.17
375 376 3.680458 GCTTACTCAAGTTCTAGCACCAC 59.320 47.826 0.00 0.00 34.00 4.16
376 377 2.841442 ACTCAAGTTCTAGCACCACC 57.159 50.000 0.00 0.00 0.00 4.61
377 378 2.047061 ACTCAAGTTCTAGCACCACCA 58.953 47.619 0.00 0.00 0.00 4.17
378 379 2.438021 ACTCAAGTTCTAGCACCACCAA 59.562 45.455 0.00 0.00 0.00 3.67
379 380 2.808543 CTCAAGTTCTAGCACCACCAAC 59.191 50.000 0.00 0.00 0.00 3.77
380 381 1.531149 CAAGTTCTAGCACCACCAACG 59.469 52.381 0.00 0.00 0.00 4.10
381 382 0.756903 AGTTCTAGCACCACCAACGT 59.243 50.000 0.00 0.00 0.00 3.99
382 383 1.965643 AGTTCTAGCACCACCAACGTA 59.034 47.619 0.00 0.00 0.00 3.57
383 384 2.366266 AGTTCTAGCACCACCAACGTAA 59.634 45.455 0.00 0.00 0.00 3.18
384 385 3.007614 AGTTCTAGCACCACCAACGTAAT 59.992 43.478 0.00 0.00 0.00 1.89
385 386 3.688694 TCTAGCACCACCAACGTAATT 57.311 42.857 0.00 0.00 0.00 1.40
386 387 3.331150 TCTAGCACCACCAACGTAATTG 58.669 45.455 0.00 0.00 38.12 2.32
387 388 2.264005 AGCACCACCAACGTAATTGA 57.736 45.000 0.00 0.00 41.23 2.57
388 389 2.790433 AGCACCACCAACGTAATTGAT 58.210 42.857 0.00 0.00 41.23 2.57
389 390 3.153919 AGCACCACCAACGTAATTGATT 58.846 40.909 0.00 0.00 41.23 2.57
390 391 3.190535 AGCACCACCAACGTAATTGATTC 59.809 43.478 0.00 0.00 41.23 2.52
391 392 3.190535 GCACCACCAACGTAATTGATTCT 59.809 43.478 0.00 0.00 41.23 2.40
392 393 4.320935 GCACCACCAACGTAATTGATTCTT 60.321 41.667 0.00 0.00 41.23 2.52
393 394 5.390613 CACCACCAACGTAATTGATTCTTC 58.609 41.667 0.00 0.00 41.23 2.87
394 395 5.181245 CACCACCAACGTAATTGATTCTTCT 59.819 40.000 0.00 0.00 41.23 2.85
395 396 5.768164 ACCACCAACGTAATTGATTCTTCTT 59.232 36.000 0.00 0.00 41.23 2.52
396 397 6.938030 ACCACCAACGTAATTGATTCTTCTTA 59.062 34.615 0.00 0.00 41.23 2.10
397 398 7.446013 ACCACCAACGTAATTGATTCTTCTTAA 59.554 33.333 0.00 0.00 41.23 1.85
398 399 8.293867 CCACCAACGTAATTGATTCTTCTTAAA 58.706 33.333 0.00 0.00 41.23 1.52
399 400 9.672086 CACCAACGTAATTGATTCTTCTTAAAA 57.328 29.630 0.00 0.00 41.23 1.52
437 438 7.039082 ACAACTATGTGCAAATATGTCCCTTTT 60.039 33.333 0.00 0.00 38.69 2.27
481 482 2.037251 TCCCTCTCCTTCAAAACGACTG 59.963 50.000 0.00 0.00 0.00 3.51
609 617 3.086600 CTCCCTGCCTCCTCCCAC 61.087 72.222 0.00 0.00 0.00 4.61
663 671 3.256960 AGGCCACCCCAACATCGT 61.257 61.111 5.01 0.00 35.39 3.73
805 816 1.407258 GCTAGCAGTGGTCTAGTCCAG 59.593 57.143 10.63 0.10 38.23 3.86
807 818 0.409876 AGCAGTGGTCTAGTCCAGGA 59.590 55.000 9.12 0.00 38.23 3.86
809 820 1.834263 GCAGTGGTCTAGTCCAGGATT 59.166 52.381 9.12 0.00 38.23 3.01
810 821 2.419297 GCAGTGGTCTAGTCCAGGATTG 60.419 54.545 9.12 7.07 38.23 2.67
813 839 1.833630 TGGTCTAGTCCAGGATTGCTG 59.166 52.381 4.43 0.00 33.19 4.41
889 918 3.038280 CGATCTCCTCGCCTCCTG 58.962 66.667 0.00 0.00 41.14 3.86
947 1539 2.446848 CCTCCTCGGCCCATCACAT 61.447 63.158 0.00 0.00 0.00 3.21
950 1542 1.224315 CCTCGGCCCATCACATTCA 59.776 57.895 0.00 0.00 0.00 2.57
952 1544 1.233019 CTCGGCCCATCACATTCATC 58.767 55.000 0.00 0.00 0.00 2.92
955 1549 1.174712 GGCCCATCACATTCATCGGG 61.175 60.000 0.00 0.00 36.71 5.14
979 1573 1.752683 AAATGTATAACCGGCCGCAA 58.247 45.000 22.85 7.27 0.00 4.85
1004 1603 0.672342 GCCCATATTTCAGCAGGCTG 59.328 55.000 14.97 14.97 44.86 4.85
1016 1615 0.895530 GCAGGCTGACTACTGTACCA 59.104 55.000 20.86 0.00 37.07 3.25
1157 1756 4.853142 TCCCTCGCCTACCGCCAT 62.853 66.667 0.00 0.00 36.73 4.40
1224 1823 3.062466 CTCGTCCTCACCGCCTCA 61.062 66.667 0.00 0.00 0.00 3.86
1277 4875 2.171448 CTCACCTCCCCAAATCTACCAG 59.829 54.545 0.00 0.00 0.00 4.00
1443 5044 2.997315 CTCCAGTCGCACCCTCCA 60.997 66.667 0.00 0.00 0.00 3.86
1607 5214 1.219124 CAGTCACCATCCAGTCGGG 59.781 63.158 0.00 0.00 38.37 5.14
1656 5263 4.776322 TCGCCTTGGCGATGTGGG 62.776 66.667 29.64 3.52 37.29 4.61
1660 5267 1.603455 CCTTGGCGATGTGGGTTGT 60.603 57.895 0.00 0.00 0.00 3.32
1875 5485 2.162408 GGCTCTGTCACTTATTGGCAAC 59.838 50.000 0.00 0.00 40.11 4.17
2042 5652 9.831737 CTATGATTGGTAAGAACAGAAACTTTG 57.168 33.333 0.00 0.00 0.00 2.77
2057 5667 9.630098 ACAGAAACTTTGCATTATGTAATTCAG 57.370 29.630 9.34 5.29 29.87 3.02
2282 5895 7.747155 TCCATAATTCTTGTCGTGGTTTTAA 57.253 32.000 0.00 0.00 0.00 1.52
2563 6186 2.160205 CTCTACCACACTCCGAAGTCA 58.840 52.381 0.00 0.00 31.71 3.41
2593 6216 8.980481 ATTCTTATTCTGACGATAAATTGGGT 57.020 30.769 0.00 0.00 0.00 4.51
2861 6485 6.358118 TGTTTATTTAGATCACATCCGCAC 57.642 37.500 0.00 0.00 0.00 5.34
3078 6705 3.721575 TGTCCCCATTGCTGGATAGTTAT 59.278 43.478 0.00 0.00 46.37 1.89
3079 6706 4.167892 TGTCCCCATTGCTGGATAGTTATT 59.832 41.667 0.00 0.00 46.37 1.40
3181 6810 9.809096 CATACGCAGACATAGGATAATATCTTT 57.191 33.333 0.00 0.00 0.00 2.52
3469 7098 0.890996 GAACCCACCAGGCTGTTCAG 60.891 60.000 14.43 0.00 40.58 3.02
3525 7154 3.616956 ATGTCATCACAGGTGTGTAGG 57.383 47.619 9.87 1.89 45.76 3.18
4349 8079 7.536281 CACACAGATACTCATGAATGTTGTTTG 59.464 37.037 0.00 0.00 0.00 2.93
4456 8190 3.513912 TGGATAGTTCACGGTCATCTGTT 59.486 43.478 0.00 0.00 0.00 3.16
4523 8258 6.279123 TGAGTAAGCAGCAGAATATTCAGAG 58.721 40.000 17.56 8.00 0.00 3.35
4562 8304 3.805066 TGACCCTGAACATTCATGGAA 57.195 42.857 19.21 7.24 43.20 3.53
4718 8528 0.394938 TAGCTCAAAGGAACGCCACA 59.605 50.000 0.00 0.00 36.29 4.17
4777 8587 6.183360 GGCACACATTTTATTGCACATGTTAG 60.183 38.462 0.00 0.00 36.66 2.34
4789 8605 3.329386 CACATGTTAGGTGGAGACTGTG 58.671 50.000 0.00 0.00 32.65 3.66
4977 8797 4.335400 AAGTTTACATTTGGCAGGTTGG 57.665 40.909 0.00 0.00 0.00 3.77
4978 8798 3.304829 AGTTTACATTTGGCAGGTTGGT 58.695 40.909 0.00 0.00 0.00 3.67
4979 8799 4.475345 AGTTTACATTTGGCAGGTTGGTA 58.525 39.130 0.00 0.00 0.00 3.25
4987 8807 3.134574 TGGCAGGTTGGTAGTACTTTG 57.865 47.619 0.00 0.00 0.00 2.77
5062 8893 6.146673 GCTCAATTCTTCAACCTTGGATTTTG 59.853 38.462 0.00 0.00 0.00 2.44
5073 8904 3.323243 CTTGGATTTTGAAGCAAGGCTG 58.677 45.455 0.00 0.00 39.62 4.85
5143 8986 5.395486 GTGTAAATGTTGAACGAAAGCTGTC 59.605 40.000 0.00 0.00 0.00 3.51
5144 8987 4.900635 AAATGTTGAACGAAAGCTGTCT 57.099 36.364 1.58 0.00 0.00 3.41
5175 9118 2.687935 TCAACAGTTCCACCTTTGAAGC 59.312 45.455 0.00 0.00 0.00 3.86
5195 9138 6.978659 TGAAGCGTTGTCTAATAATACAGGAG 59.021 38.462 0.00 0.00 0.00 3.69
5241 9185 1.397315 GCGTCGTTGAAGACTTGAAGC 60.397 52.381 0.00 0.00 38.90 3.86
5263 9207 1.001378 CACACAAGCTGCCCTGTAAAC 60.001 52.381 4.83 0.00 0.00 2.01
5276 9220 4.982295 GCCCTGTAAACTGACATGTTTTTC 59.018 41.667 0.00 0.00 40.23 2.29
5352 9298 1.201965 GCGATCAAAGAGCTGAAACGG 60.202 52.381 0.00 0.00 33.17 4.44
5389 9335 0.458025 CAAGTACTCGGCGTTCCTCC 60.458 60.000 6.85 0.00 0.00 4.30
5390 9336 0.611340 AAGTACTCGGCGTTCCTCCT 60.611 55.000 6.85 0.00 0.00 3.69
5391 9337 1.031029 AGTACTCGGCGTTCCTCCTC 61.031 60.000 6.85 0.00 0.00 3.71
5405 9351 4.148825 CCTCGCTTCCCAGTCCCG 62.149 72.222 0.00 0.00 0.00 5.14
5427 9373 0.028242 CGACGACTTCCTCCTGATCG 59.972 60.000 0.00 0.00 38.71 3.69
5439 9389 2.168106 CTCCTGATCGATCCATCCATCC 59.832 54.545 22.31 0.00 0.00 3.51
5445 9395 4.041938 TGATCGATCCATCCATCCATCAAA 59.958 41.667 22.31 0.00 30.22 2.69
5478 9428 0.316204 GTGACAGGCTGCAAAGCATT 59.684 50.000 15.89 0.00 38.13 3.56
5491 9442 1.744368 AGCATTGCTGACTGCTCCG 60.744 57.895 11.09 0.00 45.30 4.63
5581 9532 1.342975 TGTAGTGGCATCCTAGGCAGA 60.343 52.381 2.96 0.00 45.31 4.26
5590 9541 0.183014 TCCTAGGCAGACGAGTAGGG 59.817 60.000 2.96 0.00 33.98 3.53
5591 9542 1.457009 CCTAGGCAGACGAGTAGGGC 61.457 65.000 0.00 0.00 0.00 5.19
5592 9543 0.466555 CTAGGCAGACGAGTAGGGCT 60.467 60.000 0.00 7.58 39.64 5.19
5657 9622 0.179056 TGCTTGCTTATAGTCCGGGC 60.179 55.000 0.00 0.00 0.00 6.13
5658 9623 0.106894 GCTTGCTTATAGTCCGGGCT 59.893 55.000 15.76 15.76 0.00 5.19
5733 9703 2.546368 TCCGTGTCAATTTCCAAGTTCG 59.454 45.455 0.00 0.00 0.00 3.95
5736 9706 1.265635 TGTCAATTTCCAAGTTCGCCG 59.734 47.619 0.00 0.00 0.00 6.46
5810 9793 2.873133 TTTGTTTCGCCGAAAATGGT 57.127 40.000 14.64 0.00 33.14 3.55
5829 9815 2.433239 GGTAAGGCATCTTCGTTAGGGA 59.567 50.000 0.00 0.00 34.59 4.20
5869 9855 1.319669 GAACTGATCGCCGTTACGTTC 59.680 52.381 3.52 0.00 33.44 3.95
5874 9860 2.801679 TGATCGCCGTTACGTTCTTTTT 59.198 40.909 3.52 0.00 33.86 1.94
5878 9873 5.341407 TCGCCGTTACGTTCTTTTTAAAT 57.659 34.783 3.52 0.00 0.00 1.40
5888 9883 4.618067 CGTTCTTTTTAAATGGCCGTTACC 59.382 41.667 11.50 0.00 0.00 2.85
5903 9898 4.619863 GCCGTTACCTATTTCTGTGACTGA 60.620 45.833 0.00 0.00 0.00 3.41
5907 9902 6.349445 CGTTACCTATTTCTGTGACTGAGAGT 60.349 42.308 0.00 0.00 0.00 3.24
5912 9907 3.494045 TTCTGTGACTGAGAGTATGCG 57.506 47.619 0.00 0.00 0.00 4.73
5918 9913 2.826128 TGACTGAGAGTATGCGGTTCTT 59.174 45.455 0.00 0.00 0.00 2.52
5919 9914 3.119459 TGACTGAGAGTATGCGGTTCTTC 60.119 47.826 0.00 0.00 0.00 2.87
5920 9915 3.093057 ACTGAGAGTATGCGGTTCTTCT 58.907 45.455 0.00 0.00 0.00 2.85
5987 9985 3.517602 TCGCGTAGTTAGTTACCGACTA 58.482 45.455 5.77 0.00 39.86 2.59
6115 10136 3.701604 CTTTCGACGCTCCCTCCCG 62.702 68.421 0.00 0.00 0.00 5.14
6130 10151 4.814294 CCGTCCCCTTCGCCTTCG 62.814 72.222 0.00 0.00 0.00 3.79
6136 10157 2.820037 CCTTCGCCTTCGCCTTCC 60.820 66.667 0.00 0.00 35.26 3.46
6137 10158 2.266055 CTTCGCCTTCGCCTTCCT 59.734 61.111 0.00 0.00 35.26 3.36
6139 10160 2.232298 CTTCGCCTTCGCCTTCCTCT 62.232 60.000 0.00 0.00 35.26 3.69
6140 10161 2.507110 TTCGCCTTCGCCTTCCTCTG 62.507 60.000 0.00 0.00 35.26 3.35
6141 10162 2.821810 GCCTTCGCCTTCCTCTGC 60.822 66.667 0.00 0.00 0.00 4.26
6143 10164 2.664081 CCTTCGCCTTCCTCTGCCT 61.664 63.158 0.00 0.00 0.00 4.75
6144 10165 1.449246 CTTCGCCTTCCTCTGCCTG 60.449 63.158 0.00 0.00 0.00 4.85
6145 10166 3.612247 TTCGCCTTCCTCTGCCTGC 62.612 63.158 0.00 0.00 0.00 4.85
6148 10169 4.093291 CCTTCCTCTGCCTGCGCT 62.093 66.667 9.73 0.00 35.36 5.92
6149 10170 2.511145 CTTCCTCTGCCTGCGCTC 60.511 66.667 9.73 0.00 35.36 5.03
6150 10171 2.999648 TTCCTCTGCCTGCGCTCT 61.000 61.111 9.73 0.00 35.36 4.09
6151 10172 2.904470 CTTCCTCTGCCTGCGCTCTC 62.904 65.000 9.73 0.00 35.36 3.20
6152 10173 4.869440 CCTCTGCCTGCGCTCTCG 62.869 72.222 9.73 0.00 39.07 4.04
6153 10174 3.819920 CTCTGCCTGCGCTCTCGA 61.820 66.667 9.73 0.00 38.10 4.04
6285 10317 4.806481 CGATGCCGTCGTCGTCGT 62.806 66.667 9.58 0.00 45.19 4.34
6287 10319 3.378331 GATGCCGTCGTCGTCGTCT 62.378 63.158 10.76 0.00 38.33 4.18
6290 10322 4.157958 CCGTCGTCGTCGTCTCCC 62.158 72.222 10.76 0.00 38.33 4.30
6659 10715 2.202492 CTCCCGCAGTTCGAGTCG 60.202 66.667 6.09 6.09 41.67 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.340381 CCTAAAGCTTAAATGGCTGCAGAT 59.660 41.667 20.43 0.00 40.19 2.90
1 2 3.696051 CCTAAAGCTTAAATGGCTGCAGA 59.304 43.478 20.43 0.00 40.19 4.26
2 3 3.445096 ACCTAAAGCTTAAATGGCTGCAG 59.555 43.478 10.11 10.11 40.19 4.41
3 4 3.193267 CACCTAAAGCTTAAATGGCTGCA 59.807 43.478 0.00 0.00 40.19 4.41
4 5 3.774066 CACCTAAAGCTTAAATGGCTGC 58.226 45.455 0.00 0.00 40.19 5.25
5 6 3.193267 TGCACCTAAAGCTTAAATGGCTG 59.807 43.478 0.00 3.07 40.19 4.85
6 7 3.430453 TGCACCTAAAGCTTAAATGGCT 58.570 40.909 0.00 0.00 42.31 4.75
7 8 3.866883 TGCACCTAAAGCTTAAATGGC 57.133 42.857 0.00 2.21 0.00 4.40
8 9 5.126061 AGTGATGCACCTAAAGCTTAAATGG 59.874 40.000 0.00 2.34 34.49 3.16
9 10 6.032094 CAGTGATGCACCTAAAGCTTAAATG 58.968 40.000 0.00 0.00 34.49 2.32
10 11 5.393461 GCAGTGATGCACCTAAAGCTTAAAT 60.393 40.000 0.00 0.00 34.49 1.40
11 12 4.082787 GCAGTGATGCACCTAAAGCTTAAA 60.083 41.667 0.00 0.00 34.49 1.52
12 13 3.440173 GCAGTGATGCACCTAAAGCTTAA 59.560 43.478 0.00 0.00 34.49 1.85
13 14 3.009723 GCAGTGATGCACCTAAAGCTTA 58.990 45.455 0.00 0.00 34.49 3.09
14 15 1.815003 GCAGTGATGCACCTAAAGCTT 59.185 47.619 0.00 0.00 34.49 3.74
15 16 1.004044 AGCAGTGATGCACCTAAAGCT 59.996 47.619 2.73 0.00 34.49 3.74
16 17 1.457346 AGCAGTGATGCACCTAAAGC 58.543 50.000 2.73 0.00 34.49 3.51
17 18 3.599343 TGTAGCAGTGATGCACCTAAAG 58.401 45.455 0.00 0.00 34.49 1.85
18 19 3.694043 TGTAGCAGTGATGCACCTAAA 57.306 42.857 0.00 0.00 34.49 1.85
19 20 3.912496 ATGTAGCAGTGATGCACCTAA 57.088 42.857 0.00 0.00 34.49 2.69
20 21 3.704061 TGTATGTAGCAGTGATGCACCTA 59.296 43.478 0.00 0.00 34.49 3.08
21 22 2.501316 TGTATGTAGCAGTGATGCACCT 59.499 45.455 0.00 0.00 34.49 4.00
22 23 2.905075 TGTATGTAGCAGTGATGCACC 58.095 47.619 0.00 0.00 34.49 5.01
23 24 6.533012 CCTATATGTATGTAGCAGTGATGCAC 59.467 42.308 0.00 0.00 37.25 4.57
24 25 6.211384 ACCTATATGTATGTAGCAGTGATGCA 59.789 38.462 0.54 0.54 37.25 3.96
25 26 6.634805 ACCTATATGTATGTAGCAGTGATGC 58.365 40.000 0.00 0.00 0.00 3.91
26 27 8.929746 CAAACCTATATGTATGTAGCAGTGATG 58.070 37.037 0.00 0.00 0.00 3.07
27 28 7.604164 GCAAACCTATATGTATGTAGCAGTGAT 59.396 37.037 0.00 0.00 0.00 3.06
28 29 6.929049 GCAAACCTATATGTATGTAGCAGTGA 59.071 38.462 0.00 0.00 0.00 3.41
29 30 6.705825 TGCAAACCTATATGTATGTAGCAGTG 59.294 38.462 0.00 0.00 0.00 3.66
30 31 6.826668 TGCAAACCTATATGTATGTAGCAGT 58.173 36.000 0.00 0.00 0.00 4.40
31 32 7.603784 TGATGCAAACCTATATGTATGTAGCAG 59.396 37.037 0.00 0.00 29.88 4.24
32 33 7.449247 TGATGCAAACCTATATGTATGTAGCA 58.551 34.615 0.00 7.14 30.44 3.49
33 34 7.905604 TGATGCAAACCTATATGTATGTAGC 57.094 36.000 0.00 0.00 0.00 3.58
53 54 5.237996 ACCAAGTATCGAATCTGCAATGATG 59.762 40.000 0.00 0.00 0.00 3.07
54 55 5.371526 ACCAAGTATCGAATCTGCAATGAT 58.628 37.500 0.00 0.00 0.00 2.45
55 56 4.769688 ACCAAGTATCGAATCTGCAATGA 58.230 39.130 0.00 0.00 0.00 2.57
56 57 4.318333 CGACCAAGTATCGAATCTGCAATG 60.318 45.833 0.00 0.00 42.25 2.82
57 58 3.804325 CGACCAAGTATCGAATCTGCAAT 59.196 43.478 0.00 0.00 42.25 3.56
58 59 3.186909 CGACCAAGTATCGAATCTGCAA 58.813 45.455 0.00 0.00 42.25 4.08
59 60 2.165641 ACGACCAAGTATCGAATCTGCA 59.834 45.455 0.78 0.00 42.25 4.41
60 61 2.810650 ACGACCAAGTATCGAATCTGC 58.189 47.619 0.78 0.00 42.25 4.26
61 62 4.738740 GGTAACGACCAAGTATCGAATCTG 59.261 45.833 0.78 0.00 46.12 2.90
62 63 4.929781 GGTAACGACCAAGTATCGAATCT 58.070 43.478 0.78 0.00 46.12 2.40
76 77 7.912949 AAATTAAACGGAAAAAGGTAACGAC 57.087 32.000 0.00 0.00 46.39 4.34
77 78 9.444534 GTAAAATTAAACGGAAAAAGGTAACGA 57.555 29.630 0.00 0.00 46.39 3.85
78 79 9.230932 TGTAAAATTAAACGGAAAAAGGTAACG 57.769 29.630 0.00 0.00 46.39 3.18
81 82 9.194271 GCATGTAAAATTAAACGGAAAAAGGTA 57.806 29.630 0.00 0.00 0.00 3.08
82 83 7.095982 CGCATGTAAAATTAAACGGAAAAAGGT 60.096 33.333 0.00 0.00 0.00 3.50
83 84 7.224024 CGCATGTAAAATTAAACGGAAAAAGG 58.776 34.615 0.00 0.00 0.00 3.11
84 85 7.224024 CCGCATGTAAAATTAAACGGAAAAAG 58.776 34.615 0.00 0.00 41.86 2.27
85 86 6.145696 CCCGCATGTAAAATTAAACGGAAAAA 59.854 34.615 0.00 0.00 41.86 1.94
86 87 5.634020 CCCGCATGTAAAATTAAACGGAAAA 59.366 36.000 0.00 0.00 41.86 2.29
87 88 5.048224 TCCCGCATGTAAAATTAAACGGAAA 60.048 36.000 0.00 0.00 41.86 3.13
88 89 4.458295 TCCCGCATGTAAAATTAAACGGAA 59.542 37.500 0.00 0.00 41.86 4.30
89 90 4.008330 TCCCGCATGTAAAATTAAACGGA 58.992 39.130 0.00 0.00 41.86 4.69
90 91 4.099824 GTCCCGCATGTAAAATTAAACGG 58.900 43.478 0.00 0.00 39.11 4.44
91 92 4.099824 GGTCCCGCATGTAAAATTAAACG 58.900 43.478 0.00 0.00 0.00 3.60
92 93 4.158949 AGGGTCCCGCATGTAAAATTAAAC 59.841 41.667 0.99 0.00 0.00 2.01
93 94 4.345854 AGGGTCCCGCATGTAAAATTAAA 58.654 39.130 0.99 0.00 0.00 1.52
94 95 3.949113 GAGGGTCCCGCATGTAAAATTAA 59.051 43.478 6.80 0.00 0.00 1.40
95 96 3.201266 AGAGGGTCCCGCATGTAAAATTA 59.799 43.478 14.83 0.00 0.00 1.40
96 97 2.025321 AGAGGGTCCCGCATGTAAAATT 60.025 45.455 14.83 0.00 0.00 1.82
97 98 1.564348 AGAGGGTCCCGCATGTAAAAT 59.436 47.619 14.83 0.00 0.00 1.82
98 99 0.988832 AGAGGGTCCCGCATGTAAAA 59.011 50.000 14.83 0.00 0.00 1.52
99 100 0.251916 CAGAGGGTCCCGCATGTAAA 59.748 55.000 14.83 0.00 0.00 2.01
100 101 1.622607 CCAGAGGGTCCCGCATGTAA 61.623 60.000 14.83 0.00 0.00 2.41
101 102 2.063979 CCAGAGGGTCCCGCATGTA 61.064 63.158 14.83 0.00 0.00 2.29
102 103 3.402681 CCAGAGGGTCCCGCATGT 61.403 66.667 14.83 0.00 0.00 3.21
114 115 2.712709 TCTTCACCTCTACGACCAGAG 58.287 52.381 0.00 0.00 41.54 3.35
115 116 2.873094 TCTTCACCTCTACGACCAGA 57.127 50.000 0.00 0.00 0.00 3.86
116 117 3.775202 CATTCTTCACCTCTACGACCAG 58.225 50.000 0.00 0.00 0.00 4.00
117 118 2.094182 GCATTCTTCACCTCTACGACCA 60.094 50.000 0.00 0.00 0.00 4.02
118 119 2.541556 GCATTCTTCACCTCTACGACC 58.458 52.381 0.00 0.00 0.00 4.79
119 120 2.094182 TGGCATTCTTCACCTCTACGAC 60.094 50.000 0.00 0.00 0.00 4.34
120 121 2.176045 TGGCATTCTTCACCTCTACGA 58.824 47.619 0.00 0.00 0.00 3.43
121 122 2.672961 TGGCATTCTTCACCTCTACG 57.327 50.000 0.00 0.00 0.00 3.51
122 123 3.873952 GACATGGCATTCTTCACCTCTAC 59.126 47.826 0.00 0.00 0.00 2.59
123 124 3.519107 TGACATGGCATTCTTCACCTCTA 59.481 43.478 0.00 0.00 0.00 2.43
124 125 2.306805 TGACATGGCATTCTTCACCTCT 59.693 45.455 0.00 0.00 0.00 3.69
125 126 2.681848 CTGACATGGCATTCTTCACCTC 59.318 50.000 0.00 0.00 0.00 3.85
126 127 2.306805 TCTGACATGGCATTCTTCACCT 59.693 45.455 0.00 0.00 0.00 4.00
127 128 2.421424 GTCTGACATGGCATTCTTCACC 59.579 50.000 0.00 0.00 0.00 4.02
128 129 2.421424 GGTCTGACATGGCATTCTTCAC 59.579 50.000 0.00 0.00 0.00 3.18
129 130 2.715046 GGTCTGACATGGCATTCTTCA 58.285 47.619 0.00 0.00 0.00 3.02
130 131 1.667724 CGGTCTGACATGGCATTCTTC 59.332 52.381 0.00 0.00 0.00 2.87
131 132 1.679944 CCGGTCTGACATGGCATTCTT 60.680 52.381 0.00 0.00 0.00 2.52
132 133 0.107508 CCGGTCTGACATGGCATTCT 60.108 55.000 0.00 0.00 0.00 2.40
133 134 1.097547 CCCGGTCTGACATGGCATTC 61.098 60.000 0.00 0.00 0.00 2.67
134 135 1.077501 CCCGGTCTGACATGGCATT 60.078 57.895 0.00 0.00 0.00 3.56
135 136 2.257409 GACCCGGTCTGACATGGCAT 62.257 60.000 0.00 0.00 0.00 4.40
136 137 2.927856 ACCCGGTCTGACATGGCA 60.928 61.111 10.38 0.00 0.00 4.92
137 138 2.125106 GACCCGGTCTGACATGGC 60.125 66.667 10.59 0.00 0.00 4.40
138 139 1.553690 AAGGACCCGGTCTGACATGG 61.554 60.000 17.27 11.23 32.47 3.66
139 140 0.324943 AAAGGACCCGGTCTGACATG 59.675 55.000 17.27 1.23 32.47 3.21
140 141 1.064825 AAAAGGACCCGGTCTGACAT 58.935 50.000 17.27 0.00 32.47 3.06
141 142 0.841289 AAAAAGGACCCGGTCTGACA 59.159 50.000 17.27 0.00 32.47 3.58
142 143 1.235724 CAAAAAGGACCCGGTCTGAC 58.764 55.000 17.27 0.00 32.47 3.51
143 144 0.841289 ACAAAAAGGACCCGGTCTGA 59.159 50.000 17.27 0.00 32.47 3.27
144 145 0.951558 CACAAAAAGGACCCGGTCTG 59.048 55.000 17.27 9.56 32.47 3.51
145 146 0.841289 TCACAAAAAGGACCCGGTCT 59.159 50.000 17.27 0.80 32.47 3.85
146 147 1.682740 TTCACAAAAAGGACCCGGTC 58.317 50.000 9.30 9.30 0.00 4.79
147 148 2.146920 TTTCACAAAAAGGACCCGGT 57.853 45.000 0.00 0.00 0.00 5.28
148 149 6.709018 ATATATTTCACAAAAAGGACCCGG 57.291 37.500 0.00 0.00 0.00 5.73
158 159 9.938280 CCCCTCGAAGTATATATATTTCACAAA 57.062 33.333 21.27 8.16 30.95 2.83
159 160 8.537016 CCCCCTCGAAGTATATATATTTCACAA 58.463 37.037 21.27 9.91 30.95 3.33
160 161 7.897030 TCCCCCTCGAAGTATATATATTTCACA 59.103 37.037 21.27 10.62 30.95 3.58
161 162 8.302515 TCCCCCTCGAAGTATATATATTTCAC 57.697 38.462 21.27 2.47 30.95 3.18
162 163 8.904648 TTCCCCCTCGAAGTATATATATTTCA 57.095 34.615 21.27 11.55 30.95 2.69
167 168 9.328975 TCAAATTTCCCCCTCGAAGTATATATA 57.671 33.333 0.00 0.00 0.00 0.86
168 169 8.214721 TCAAATTTCCCCCTCGAAGTATATAT 57.785 34.615 0.00 0.00 0.00 0.86
169 170 7.621006 TCAAATTTCCCCCTCGAAGTATATA 57.379 36.000 0.00 0.00 0.00 0.86
170 171 6.509523 TCAAATTTCCCCCTCGAAGTATAT 57.490 37.500 0.00 0.00 0.00 0.86
171 172 5.961398 TCAAATTTCCCCCTCGAAGTATA 57.039 39.130 0.00 0.00 0.00 1.47
172 173 4.855298 TCAAATTTCCCCCTCGAAGTAT 57.145 40.909 0.00 0.00 0.00 2.12
173 174 4.644163 TTCAAATTTCCCCCTCGAAGTA 57.356 40.909 0.00 0.00 0.00 2.24
174 175 3.518992 TTCAAATTTCCCCCTCGAAGT 57.481 42.857 0.00 0.00 0.00 3.01
175 176 4.038642 TGTTTTCAAATTTCCCCCTCGAAG 59.961 41.667 0.00 0.00 0.00 3.79
176 177 3.961408 TGTTTTCAAATTTCCCCCTCGAA 59.039 39.130 0.00 0.00 0.00 3.71
177 178 3.567397 TGTTTTCAAATTTCCCCCTCGA 58.433 40.909 0.00 0.00 0.00 4.04
178 179 4.021544 TGATGTTTTCAAATTTCCCCCTCG 60.022 41.667 0.00 0.00 0.00 4.63
179 180 5.482006 CTGATGTTTTCAAATTTCCCCCTC 58.518 41.667 0.00 0.00 32.78 4.30
180 181 4.286808 CCTGATGTTTTCAAATTTCCCCCT 59.713 41.667 0.00 0.00 32.78 4.79
181 182 4.578871 CCTGATGTTTTCAAATTTCCCCC 58.421 43.478 0.00 0.00 32.78 5.40
182 183 4.002982 GCCTGATGTTTTCAAATTTCCCC 58.997 43.478 0.00 0.00 32.78 4.81
183 184 4.002982 GGCCTGATGTTTTCAAATTTCCC 58.997 43.478 0.00 0.00 32.78 3.97
184 185 4.452114 GTGGCCTGATGTTTTCAAATTTCC 59.548 41.667 3.32 0.00 32.78 3.13
185 186 5.050159 GTGTGGCCTGATGTTTTCAAATTTC 60.050 40.000 3.32 0.00 32.78 2.17
186 187 4.815846 GTGTGGCCTGATGTTTTCAAATTT 59.184 37.500 3.32 0.00 32.78 1.82
187 188 4.141756 TGTGTGGCCTGATGTTTTCAAATT 60.142 37.500 3.32 0.00 32.78 1.82
188 189 3.387374 TGTGTGGCCTGATGTTTTCAAAT 59.613 39.130 3.32 0.00 32.78 2.32
189 190 2.762887 TGTGTGGCCTGATGTTTTCAAA 59.237 40.909 3.32 0.00 32.78 2.69
190 191 2.100584 GTGTGTGGCCTGATGTTTTCAA 59.899 45.455 3.32 0.00 32.78 2.69
191 192 1.680735 GTGTGTGGCCTGATGTTTTCA 59.319 47.619 3.32 0.00 0.00 2.69
192 193 1.000274 GGTGTGTGGCCTGATGTTTTC 60.000 52.381 3.32 0.00 0.00 2.29
193 194 1.039856 GGTGTGTGGCCTGATGTTTT 58.960 50.000 3.32 0.00 0.00 2.43
194 195 0.827507 GGGTGTGTGGCCTGATGTTT 60.828 55.000 3.32 0.00 0.00 2.83
195 196 1.228552 GGGTGTGTGGCCTGATGTT 60.229 57.895 3.32 0.00 0.00 2.71
196 197 2.436109 GGGTGTGTGGCCTGATGT 59.564 61.111 3.32 0.00 0.00 3.06
197 198 2.361610 GGGGTGTGTGGCCTGATG 60.362 66.667 3.32 0.00 0.00 3.07
198 199 2.142292 GAAGGGGTGTGTGGCCTGAT 62.142 60.000 3.32 0.00 0.00 2.90
199 200 2.776526 AAGGGGTGTGTGGCCTGA 60.777 61.111 3.32 0.00 0.00 3.86
200 201 2.282462 GAAGGGGTGTGTGGCCTG 60.282 66.667 3.32 0.00 0.00 4.85
201 202 2.450502 AGAAGGGGTGTGTGGCCT 60.451 61.111 3.32 0.00 0.00 5.19
202 203 2.034221 GAGAAGGGGTGTGTGGCC 59.966 66.667 0.00 0.00 0.00 5.36
203 204 2.034221 GGAGAAGGGGTGTGTGGC 59.966 66.667 0.00 0.00 0.00 5.01
204 205 1.376466 CAGGAGAAGGGGTGTGTGG 59.624 63.158 0.00 0.00 0.00 4.17
205 206 1.376466 CCAGGAGAAGGGGTGTGTG 59.624 63.158 0.00 0.00 0.00 3.82
206 207 1.073706 ACCAGGAGAAGGGGTGTGT 60.074 57.895 0.00 0.00 32.60 3.72
207 208 0.838122 AGACCAGGAGAAGGGGTGTG 60.838 60.000 0.00 0.00 34.39 3.82
208 209 0.790993 TAGACCAGGAGAAGGGGTGT 59.209 55.000 0.00 0.00 34.39 4.16
209 210 1.273324 ACTAGACCAGGAGAAGGGGTG 60.273 57.143 0.00 0.00 34.39 4.61
210 211 1.094269 ACTAGACCAGGAGAAGGGGT 58.906 55.000 0.00 0.00 37.70 4.95
211 212 1.490574 CACTAGACCAGGAGAAGGGG 58.509 60.000 0.00 0.00 0.00 4.79
212 213 1.490574 CCACTAGACCAGGAGAAGGG 58.509 60.000 0.00 0.00 0.00 3.95
213 214 0.827368 GCCACTAGACCAGGAGAAGG 59.173 60.000 0.00 0.00 0.00 3.46
214 215 1.480137 CAGCCACTAGACCAGGAGAAG 59.520 57.143 0.00 0.00 0.00 2.85
215 216 1.077169 TCAGCCACTAGACCAGGAGAA 59.923 52.381 0.00 0.00 0.00 2.87
216 217 0.704664 TCAGCCACTAGACCAGGAGA 59.295 55.000 0.00 0.00 0.00 3.71
217 218 0.820871 GTCAGCCACTAGACCAGGAG 59.179 60.000 0.00 0.00 0.00 3.69
218 219 0.114364 TGTCAGCCACTAGACCAGGA 59.886 55.000 0.00 0.00 33.89 3.86
219 220 0.534412 CTGTCAGCCACTAGACCAGG 59.466 60.000 0.00 0.00 33.89 4.45
220 221 0.108424 GCTGTCAGCCACTAGACCAG 60.108 60.000 14.27 0.00 34.48 4.00
221 222 1.877576 CGCTGTCAGCCACTAGACCA 61.878 60.000 19.14 0.00 38.18 4.02
222 223 1.153745 CGCTGTCAGCCACTAGACC 60.154 63.158 19.14 0.00 38.18 3.85
223 224 1.153745 CCGCTGTCAGCCACTAGAC 60.154 63.158 19.14 0.00 38.18 2.59
224 225 3.006756 GCCGCTGTCAGCCACTAGA 62.007 63.158 19.14 0.00 38.18 2.43
225 226 2.510238 GCCGCTGTCAGCCACTAG 60.510 66.667 19.14 4.53 38.18 2.57
243 244 4.514577 CTGACTAGGCGCGTGGGG 62.515 72.222 17.84 8.01 0.00 4.96
245 246 4.435436 TGCTGACTAGGCGCGTGG 62.435 66.667 13.84 12.95 0.00 4.94
246 247 3.181967 GTGCTGACTAGGCGCGTG 61.182 66.667 13.84 5.45 0.00 5.34
247 248 3.633094 CTGTGCTGACTAGGCGCGT 62.633 63.158 8.43 8.08 42.33 6.01
248 249 2.619840 ATCTGTGCTGACTAGGCGCG 62.620 60.000 0.00 0.00 42.33 6.86
249 250 0.460987 AATCTGTGCTGACTAGGCGC 60.461 55.000 0.00 0.00 40.19 6.53
250 251 2.015736 AAATCTGTGCTGACTAGGCG 57.984 50.000 0.00 0.00 0.00 5.52
251 252 3.077359 ACAAAATCTGTGCTGACTAGGC 58.923 45.455 0.00 0.00 36.69 3.93
252 253 7.041721 TGTATACAAAATCTGTGCTGACTAGG 58.958 38.462 2.20 0.00 39.20 3.02
253 254 7.976175 TCTGTATACAAAATCTGTGCTGACTAG 59.024 37.037 7.06 0.00 39.20 2.57
254 255 7.759886 GTCTGTATACAAAATCTGTGCTGACTA 59.240 37.037 7.06 0.00 39.20 2.59
255 256 6.591834 GTCTGTATACAAAATCTGTGCTGACT 59.408 38.462 7.06 0.00 39.20 3.41
256 257 6.591834 AGTCTGTATACAAAATCTGTGCTGAC 59.408 38.462 7.06 6.25 39.20 3.51
257 258 6.591448 CAGTCTGTATACAAAATCTGTGCTGA 59.409 38.462 7.06 0.00 39.20 4.26
258 259 6.369890 ACAGTCTGTATACAAAATCTGTGCTG 59.630 38.462 20.60 15.32 39.20 4.41
259 260 6.467677 ACAGTCTGTATACAAAATCTGTGCT 58.532 36.000 20.60 6.44 39.20 4.40
260 261 6.727824 ACAGTCTGTATACAAAATCTGTGC 57.272 37.500 20.60 4.91 39.20 4.57
267 268 9.695526 ACGTACAAATACAGTCTGTATACAAAA 57.304 29.630 22.87 8.00 42.29 2.44
268 269 9.131416 CACGTACAAATACAGTCTGTATACAAA 57.869 33.333 22.87 9.20 42.29 2.83
269 270 7.756272 CCACGTACAAATACAGTCTGTATACAA 59.244 37.037 22.87 8.89 42.29 2.41
270 271 7.121020 TCCACGTACAAATACAGTCTGTATACA 59.879 37.037 22.87 5.25 42.29 2.29
271 272 7.475015 TCCACGTACAAATACAGTCTGTATAC 58.525 38.462 22.87 16.51 42.29 1.47
272 273 7.628769 TCCACGTACAAATACAGTCTGTATA 57.371 36.000 22.87 7.39 42.29 1.47
273 274 6.519679 TCCACGTACAAATACAGTCTGTAT 57.480 37.500 18.13 18.13 44.79 2.29
274 275 5.963176 TCCACGTACAAATACAGTCTGTA 57.037 39.130 14.99 14.99 37.24 2.74
275 276 4.859304 TCCACGTACAAATACAGTCTGT 57.141 40.909 10.99 10.99 0.00 3.41
276 277 5.227908 ACTTCCACGTACAAATACAGTCTG 58.772 41.667 0.00 0.00 0.00 3.51
277 278 5.464030 ACTTCCACGTACAAATACAGTCT 57.536 39.130 0.00 0.00 0.00 3.24
278 279 7.383300 ACTTTACTTCCACGTACAAATACAGTC 59.617 37.037 0.00 0.00 0.00 3.51
279 280 7.212274 ACTTTACTTCCACGTACAAATACAGT 58.788 34.615 0.00 0.00 0.00 3.55
280 281 7.647907 ACTTTACTTCCACGTACAAATACAG 57.352 36.000 0.00 0.00 0.00 2.74
281 282 8.436046 AAACTTTACTTCCACGTACAAATACA 57.564 30.769 0.00 0.00 0.00 2.29
282 283 9.720667 AAAAACTTTACTTCCACGTACAAATAC 57.279 29.630 0.00 0.00 0.00 1.89
283 284 9.719279 CAAAAACTTTACTTCCACGTACAAATA 57.281 29.630 0.00 0.00 0.00 1.40
284 285 7.221259 GCAAAAACTTTACTTCCACGTACAAAT 59.779 33.333 0.00 0.00 0.00 2.32
285 286 6.527372 GCAAAAACTTTACTTCCACGTACAAA 59.473 34.615 0.00 0.00 0.00 2.83
286 287 6.028987 GCAAAAACTTTACTTCCACGTACAA 58.971 36.000 0.00 0.00 0.00 2.41
287 288 5.123502 TGCAAAAACTTTACTTCCACGTACA 59.876 36.000 0.00 0.00 0.00 2.90
288 289 5.571277 TGCAAAAACTTTACTTCCACGTAC 58.429 37.500 0.00 0.00 0.00 3.67
289 290 5.814764 TGCAAAAACTTTACTTCCACGTA 57.185 34.783 0.00 0.00 0.00 3.57
290 291 4.705337 TGCAAAAACTTTACTTCCACGT 57.295 36.364 0.00 0.00 0.00 4.49
291 292 5.277825 TGATGCAAAAACTTTACTTCCACG 58.722 37.500 0.00 0.00 0.00 4.94
292 293 7.713764 AATGATGCAAAAACTTTACTTCCAC 57.286 32.000 0.00 0.00 0.00 4.02
293 294 7.984050 TGAAATGATGCAAAAACTTTACTTCCA 59.016 29.630 0.00 0.00 0.00 3.53
294 295 8.364129 TGAAATGATGCAAAAACTTTACTTCC 57.636 30.769 0.00 0.00 0.00 3.46
297 298 9.328845 ACATTGAAATGATGCAAAAACTTTACT 57.671 25.926 9.94 0.00 39.67 2.24
300 301 9.107177 TGTACATTGAAATGATGCAAAAACTTT 57.893 25.926 9.94 0.00 39.67 2.66
301 302 8.550376 GTGTACATTGAAATGATGCAAAAACTT 58.450 29.630 9.94 0.00 39.67 2.66
302 303 7.171337 GGTGTACATTGAAATGATGCAAAAACT 59.829 33.333 9.94 0.00 39.67 2.66
303 304 7.290118 GGTGTACATTGAAATGATGCAAAAAC 58.710 34.615 9.94 0.00 39.67 2.43
304 305 6.145209 CGGTGTACATTGAAATGATGCAAAAA 59.855 34.615 9.94 0.00 39.67 1.94
305 306 5.632764 CGGTGTACATTGAAATGATGCAAAA 59.367 36.000 9.94 0.00 39.67 2.44
306 307 5.159925 CGGTGTACATTGAAATGATGCAAA 58.840 37.500 9.94 0.00 39.67 3.68
307 308 4.731720 CGGTGTACATTGAAATGATGCAA 58.268 39.130 9.94 0.00 39.67 4.08
308 309 3.427368 GCGGTGTACATTGAAATGATGCA 60.427 43.478 9.94 0.00 39.67 3.96
309 310 3.108144 GCGGTGTACATTGAAATGATGC 58.892 45.455 9.94 1.45 39.67 3.91
310 311 4.354071 TGCGGTGTACATTGAAATGATG 57.646 40.909 9.94 0.00 39.67 3.07
311 312 5.581126 ATTGCGGTGTACATTGAAATGAT 57.419 34.783 9.94 0.00 39.67 2.45
312 313 5.384063 AATTGCGGTGTACATTGAAATGA 57.616 34.783 9.94 0.00 39.67 2.57
313 314 5.863397 AGAAATTGCGGTGTACATTGAAATG 59.137 36.000 0.00 1.45 42.10 2.32
314 315 6.024552 AGAAATTGCGGTGTACATTGAAAT 57.975 33.333 0.00 0.00 0.00 2.17
315 316 5.446143 AGAAATTGCGGTGTACATTGAAA 57.554 34.783 0.00 0.00 0.00 2.69
316 317 5.391523 GCTAGAAATTGCGGTGTACATTGAA 60.392 40.000 0.00 0.00 0.00 2.69
317 318 4.094294 GCTAGAAATTGCGGTGTACATTGA 59.906 41.667 0.00 0.00 0.00 2.57
318 319 4.142708 TGCTAGAAATTGCGGTGTACATTG 60.143 41.667 0.00 0.00 0.00 2.82
319 320 4.006989 TGCTAGAAATTGCGGTGTACATT 58.993 39.130 0.00 0.00 0.00 2.71
320 321 3.605634 TGCTAGAAATTGCGGTGTACAT 58.394 40.909 0.00 0.00 0.00 2.29
321 322 3.046968 TGCTAGAAATTGCGGTGTACA 57.953 42.857 0.00 0.00 0.00 2.90
322 323 3.621268 TGATGCTAGAAATTGCGGTGTAC 59.379 43.478 0.00 0.00 0.00 2.90
323 324 3.867857 TGATGCTAGAAATTGCGGTGTA 58.132 40.909 0.00 0.00 0.00 2.90
324 325 2.710377 TGATGCTAGAAATTGCGGTGT 58.290 42.857 0.00 0.00 0.00 4.16
325 326 3.763097 TTGATGCTAGAAATTGCGGTG 57.237 42.857 0.00 0.00 0.00 4.94
326 327 3.758554 ACTTTGATGCTAGAAATTGCGGT 59.241 39.130 0.00 0.00 0.00 5.68
327 328 4.100529 CACTTTGATGCTAGAAATTGCGG 58.899 43.478 0.00 0.00 0.00 5.69
328 329 4.790140 GTCACTTTGATGCTAGAAATTGCG 59.210 41.667 0.00 0.00 0.00 4.85
329 330 5.098211 GGTCACTTTGATGCTAGAAATTGC 58.902 41.667 0.00 0.00 0.00 3.56
330 331 5.327091 CGGTCACTTTGATGCTAGAAATTG 58.673 41.667 0.00 0.00 0.00 2.32
331 332 4.142600 GCGGTCACTTTGATGCTAGAAATT 60.143 41.667 0.00 0.00 30.93 1.82
332 333 3.375299 GCGGTCACTTTGATGCTAGAAAT 59.625 43.478 0.00 0.00 30.93 2.17
333 334 2.742053 GCGGTCACTTTGATGCTAGAAA 59.258 45.455 0.00 0.00 30.93 2.52
334 335 2.028112 AGCGGTCACTTTGATGCTAGAA 60.028 45.455 0.00 0.00 38.56 2.10
335 336 1.550524 AGCGGTCACTTTGATGCTAGA 59.449 47.619 0.00 0.00 38.56 2.43
336 337 2.015736 AGCGGTCACTTTGATGCTAG 57.984 50.000 4.59 0.00 38.56 3.42
337 338 2.472695 AAGCGGTCACTTTGATGCTA 57.527 45.000 6.37 0.00 39.12 3.49
338 339 2.076863 GTAAGCGGTCACTTTGATGCT 58.923 47.619 0.00 1.33 40.89 3.79
339 340 2.076863 AGTAAGCGGTCACTTTGATGC 58.923 47.619 0.00 0.00 32.86 3.91
340 341 3.325870 TGAGTAAGCGGTCACTTTGATG 58.674 45.455 0.00 0.00 0.00 3.07
341 342 3.678056 TGAGTAAGCGGTCACTTTGAT 57.322 42.857 0.00 0.00 0.00 2.57
342 343 3.181469 ACTTGAGTAAGCGGTCACTTTGA 60.181 43.478 0.00 0.00 37.43 2.69
343 344 3.131396 ACTTGAGTAAGCGGTCACTTTG 58.869 45.455 0.00 0.00 37.43 2.77
344 345 3.470645 ACTTGAGTAAGCGGTCACTTT 57.529 42.857 0.00 0.00 37.43 2.66
345 346 3.069729 AGAACTTGAGTAAGCGGTCACTT 59.930 43.478 0.00 0.00 37.43 3.16
346 347 2.628657 AGAACTTGAGTAAGCGGTCACT 59.371 45.455 0.00 0.00 37.43 3.41
347 348 3.027974 AGAACTTGAGTAAGCGGTCAC 57.972 47.619 0.00 0.00 37.43 3.67
348 349 3.367087 GCTAGAACTTGAGTAAGCGGTCA 60.367 47.826 0.00 0.00 37.43 4.02
349 350 3.180613 GCTAGAACTTGAGTAAGCGGTC 58.819 50.000 0.00 0.00 37.43 4.79
350 351 2.561419 TGCTAGAACTTGAGTAAGCGGT 59.439 45.455 0.00 0.00 37.43 5.68
351 352 2.924290 GTGCTAGAACTTGAGTAAGCGG 59.076 50.000 0.00 0.00 37.43 5.52
352 353 2.924290 GGTGCTAGAACTTGAGTAAGCG 59.076 50.000 0.00 0.00 37.43 4.68
353 354 3.680458 GTGGTGCTAGAACTTGAGTAAGC 59.320 47.826 0.00 6.26 37.43 3.09
354 355 4.246458 GGTGGTGCTAGAACTTGAGTAAG 58.754 47.826 0.00 0.00 39.86 2.34
355 356 3.644265 TGGTGGTGCTAGAACTTGAGTAA 59.356 43.478 0.00 0.00 0.00 2.24
356 357 3.236047 TGGTGGTGCTAGAACTTGAGTA 58.764 45.455 0.00 0.00 0.00 2.59
357 358 2.047061 TGGTGGTGCTAGAACTTGAGT 58.953 47.619 0.00 0.00 0.00 3.41
358 359 2.808543 GTTGGTGGTGCTAGAACTTGAG 59.191 50.000 0.00 0.00 0.00 3.02
359 360 2.805295 CGTTGGTGGTGCTAGAACTTGA 60.805 50.000 0.00 0.00 0.00 3.02
360 361 1.531149 CGTTGGTGGTGCTAGAACTTG 59.469 52.381 0.00 0.00 0.00 3.16
361 362 1.140252 ACGTTGGTGGTGCTAGAACTT 59.860 47.619 0.00 0.00 0.00 2.66
362 363 0.756903 ACGTTGGTGGTGCTAGAACT 59.243 50.000 0.00 0.00 0.00 3.01
363 364 2.443887 TACGTTGGTGGTGCTAGAAC 57.556 50.000 0.00 0.00 0.00 3.01
364 365 3.688694 ATTACGTTGGTGGTGCTAGAA 57.311 42.857 0.00 0.00 0.00 2.10
365 366 3.007074 TCAATTACGTTGGTGGTGCTAGA 59.993 43.478 0.00 0.00 38.39 2.43
366 367 3.331150 TCAATTACGTTGGTGGTGCTAG 58.669 45.455 0.00 0.00 38.39 3.42
367 368 3.404224 TCAATTACGTTGGTGGTGCTA 57.596 42.857 0.00 0.00 38.39 3.49
368 369 2.264005 TCAATTACGTTGGTGGTGCT 57.736 45.000 0.00 0.00 38.39 4.40
369 370 3.190535 AGAATCAATTACGTTGGTGGTGC 59.809 43.478 0.00 0.00 38.39 5.01
370 371 5.181245 AGAAGAATCAATTACGTTGGTGGTG 59.819 40.000 0.00 0.00 38.39 4.17
371 372 5.313712 AGAAGAATCAATTACGTTGGTGGT 58.686 37.500 0.00 0.00 38.39 4.16
372 373 5.880054 AGAAGAATCAATTACGTTGGTGG 57.120 39.130 0.00 0.00 38.39 4.61
373 374 9.672086 TTTTAAGAAGAATCAATTACGTTGGTG 57.328 29.630 0.00 0.00 38.39 4.17
417 418 5.127682 GGAGAAAAGGGACATATTTGCACAT 59.872 40.000 0.00 0.00 0.00 3.21
437 438 4.202567 ACCTGAAGCAAATTAGTTGGGAGA 60.203 41.667 0.00 0.00 37.73 3.71
481 482 4.500116 GGAGCGAGCGACAGGGAC 62.500 72.222 0.00 0.00 0.00 4.46
538 543 0.178068 AAGCACCGGATCTGCGTATT 59.822 50.000 9.46 0.00 39.79 1.89
609 617 2.511452 CCTGGATGCCGGAGTAGGG 61.511 68.421 5.05 0.00 29.82 3.53
663 671 1.737735 CTGACGAGGATGCGCAACA 60.738 57.895 17.11 5.54 33.86 3.33
752 760 4.385405 GGGACGTGCAGCTGAGCT 62.385 66.667 20.43 0.00 40.77 4.09
767 778 3.006728 TTGCCTCCGGGTGTAGGG 61.007 66.667 0.00 0.00 33.17 3.53
790 801 2.419297 GCAATCCTGGACTAGACCACTG 60.419 54.545 10.05 4.93 35.91 3.66
805 816 2.044946 AACGGGGAGCAGCAATCC 60.045 61.111 0.00 0.00 35.99 3.01
807 818 3.064324 GCAACGGGGAGCAGCAAT 61.064 61.111 0.00 0.00 0.00 3.56
809 820 4.704833 GAGCAACGGGGAGCAGCA 62.705 66.667 0.00 0.00 0.00 4.41
813 839 1.403687 ATCTAGGAGCAACGGGGAGC 61.404 60.000 0.00 0.00 0.00 4.70
860 886 4.148825 AGATCGAGCACCACCGCC 62.149 66.667 2.38 0.00 0.00 6.13
861 887 2.583593 GAGATCGAGCACCACCGC 60.584 66.667 2.38 0.00 0.00 5.68
889 918 2.281139 GCTAATCCTGCGAGGCCC 60.281 66.667 0.00 0.00 34.61 5.80
979 1573 1.525995 CTGAAATATGGGCCCGCGT 60.526 57.895 19.37 8.47 0.00 6.01
1016 1615 0.039326 AGGAATCAGCTGGCTTTGCT 59.961 50.000 15.13 12.74 42.06 3.91
1032 1631 2.680965 GCCGGAATTGGGGAAGGA 59.319 61.111 5.05 0.00 0.00 3.36
1119 1718 0.464916 GGGACGAGAGGAGAGAGGAC 60.465 65.000 0.00 0.00 0.00 3.85
1224 1823 0.257616 CGAGGAAGGAGAGGAGGACT 59.742 60.000 0.00 0.00 0.00 3.85
1515 5116 4.845580 ATTGCCCGCTCGAGCTGG 62.846 66.667 35.58 35.58 46.49 4.85
1729 5336 0.473755 TTCATCCCATCCCCATCACG 59.526 55.000 0.00 0.00 0.00 4.35
1875 5485 7.430211 CCATTCATGAAATACTTGATGAACACG 59.570 37.037 13.09 0.00 44.53 4.49
2042 5652 7.115378 GCAGCAATAACCTGAATTACATAATGC 59.885 37.037 0.00 0.00 32.03 3.56
2180 5792 6.377912 AGGGAGCTAACAGATGTCTATAGTT 58.622 40.000 0.00 0.00 0.00 2.24
2514 6137 5.997746 TGGAAAGAACAGGAGAAGTTGTATG 59.002 40.000 0.00 0.00 0.00 2.39
2593 6216 3.119319 TCCCATACTAAGGACATTGCCA 58.881 45.455 0.00 0.00 0.00 4.92
2796 6420 3.510388 TTTGATCGTCCTGTAGCTGAG 57.490 47.619 0.00 0.00 0.00 3.35
2861 6485 9.639601 AAGTAAAGAACAGAAAAAGTTCAAAGG 57.360 29.630 8.54 0.00 45.93 3.11
3090 6719 4.918810 AAAGGGTGCTGTTTAGTGAAAG 57.081 40.909 0.00 0.00 0.00 2.62
3469 7098 0.383949 TGCGCCTTCTTTGAACCAAC 59.616 50.000 4.18 0.00 0.00 3.77
3525 7154 6.628185 AGGCAAAGACAAAAGATGATGAATC 58.372 36.000 0.00 0.00 35.29 2.52
3844 7474 4.661222 TGCCAAATATGTTCTCAAGTCCA 58.339 39.130 0.00 0.00 0.00 4.02
4013 7644 5.941948 AAAAATAGACAGACTTTCCCACG 57.058 39.130 0.00 0.00 0.00 4.94
4456 8190 9.834628 CGGAAAAATAAATAAAGAAGTACTGCA 57.165 29.630 3.00 0.00 0.00 4.41
4523 8258 3.084039 TCATGAGGCATGTGGAGTTTTC 58.916 45.455 7.23 0.00 41.98 2.29
4647 8453 6.153680 ACCTGGAAAACATTACTTGTCAAACA 59.846 34.615 0.00 0.00 37.68 2.83
4650 8456 7.284074 TCTACCTGGAAAACATTACTTGTCAA 58.716 34.615 0.00 0.00 37.68 3.18
4718 8528 4.323104 GCAGAAGAGTCACCTATTCCAAGT 60.323 45.833 0.00 0.00 39.28 3.16
4777 8587 2.640316 AAACCTTCACAGTCTCCACC 57.360 50.000 0.00 0.00 0.00 4.61
4977 8797 7.506328 AGGACAAACAATTCCAAAGTACTAC 57.494 36.000 0.00 0.00 33.92 2.73
4978 8798 9.629878 TTTAGGACAAACAATTCCAAAGTACTA 57.370 29.630 0.00 0.00 33.92 1.82
4979 8799 8.410912 GTTTAGGACAAACAATTCCAAAGTACT 58.589 33.333 0.00 0.00 33.92 2.73
5031 8851 5.803020 AGGTTGAAGAATTGAGCGATAAC 57.197 39.130 0.00 0.00 0.00 1.89
5038 8858 7.436118 TCAAAATCCAAGGTTGAAGAATTGAG 58.564 34.615 0.00 0.00 0.00 3.02
5039 8859 7.358770 TCAAAATCCAAGGTTGAAGAATTGA 57.641 32.000 0.00 0.00 0.00 2.57
5062 8893 1.815003 ACAATGCTACAGCCTTGCTTC 59.185 47.619 16.19 0.00 46.12 3.86
5073 8904 1.936547 GGCTGCTGACTACAATGCTAC 59.063 52.381 0.00 0.00 0.00 3.58
5143 8986 4.023707 GTGGAACTGTTGAAGGAACATGAG 60.024 45.833 0.00 0.00 43.78 2.90
5144 8987 3.882888 GTGGAACTGTTGAAGGAACATGA 59.117 43.478 0.00 0.00 43.78 3.07
5241 9185 2.410322 TACAGGGCAGCTTGTGTGGG 62.410 60.000 11.81 0.00 0.00 4.61
5283 9229 2.348779 CGCAAAGAATGGCTGCAAAAAC 60.349 45.455 0.50 0.00 35.78 2.43
5352 9298 2.436115 GCCCGCTCCACCTTGTAC 60.436 66.667 0.00 0.00 0.00 2.90
5389 9335 4.148825 CCGGGACTGGGAAGCGAG 62.149 72.222 0.00 0.00 0.00 5.03
5405 9351 3.069318 AGGAGGAAGTCGTCGCCC 61.069 66.667 0.00 0.00 0.00 6.13
5427 9373 5.047519 GGATTGTTTGATGGATGGATGGATC 60.048 44.000 0.00 0.00 0.00 3.36
5439 9389 4.336153 TCACCGATGATGGATTGTTTGATG 59.664 41.667 0.00 0.00 0.00 3.07
5445 9395 2.420547 CCTGTCACCGATGATGGATTGT 60.421 50.000 0.00 0.00 37.14 2.71
5491 9442 2.325857 GATGACGATGCCAAGCGC 59.674 61.111 0.00 0.00 39.29 5.92
5543 9494 7.758980 GCCACTACAGATCATCATTATCTACTG 59.241 40.741 0.00 0.00 32.40 2.74
5591 9542 1.202065 ACAGATTTACATGCGCGCAAG 60.202 47.619 39.68 35.64 43.44 4.01
5592 9543 0.801872 ACAGATTTACATGCGCGCAA 59.198 45.000 39.68 22.49 0.00 4.85
5657 9622 3.304659 CGAACAAAAATGTGGGTCCTCAG 60.305 47.826 0.00 0.00 0.00 3.35
5658 9623 2.621055 CGAACAAAAATGTGGGTCCTCA 59.379 45.455 0.00 0.00 0.00 3.86
5744 9724 4.888326 TGATTGATTCAACCAAAAGGGG 57.112 40.909 0.15 0.00 42.91 4.79
5802 9785 4.965119 ACGAAGATGCCTTACCATTTTC 57.035 40.909 0.00 0.00 34.65 2.29
5810 9793 4.829872 TTTCCCTAACGAAGATGCCTTA 57.170 40.909 0.00 0.00 31.62 2.69
5834 9820 6.681777 CGATCAGTTCCATTTTCCTTTCTTT 58.318 36.000 0.00 0.00 0.00 2.52
5836 9822 4.156739 GCGATCAGTTCCATTTTCCTTTCT 59.843 41.667 0.00 0.00 0.00 2.52
5837 9823 4.415735 GCGATCAGTTCCATTTTCCTTTC 58.584 43.478 0.00 0.00 0.00 2.62
5850 9836 1.068055 AGAACGTAACGGCGATCAGTT 60.068 47.619 16.62 14.28 36.37 3.16
5855 9841 4.988708 TTAAAAAGAACGTAACGGCGAT 57.011 36.364 16.62 3.59 35.59 4.58
5856 9842 4.785669 TTTAAAAAGAACGTAACGGCGA 57.214 36.364 16.62 0.00 35.59 5.54
5869 9855 8.248253 AGAAATAGGTAACGGCCATTTAAAAAG 58.752 33.333 2.24 0.00 46.39 2.27
5874 9860 5.587043 CACAGAAATAGGTAACGGCCATTTA 59.413 40.000 2.24 0.00 46.39 1.40
5878 9873 2.568062 TCACAGAAATAGGTAACGGCCA 59.432 45.455 2.24 0.00 46.39 5.36
5888 9883 5.685068 CGCATACTCTCAGTCACAGAAATAG 59.315 44.000 0.00 0.00 0.00 1.73
5903 9898 1.405821 CGGAGAAGAACCGCATACTCT 59.594 52.381 0.00 0.00 43.74 3.24
5936 9931 1.441016 CTTTCTCGCTTGCGGTTGC 60.441 57.895 15.10 0.00 43.20 4.17
6005 10003 4.961511 TCACTGTGACCGTGCGCC 62.962 66.667 6.36 0.00 32.54 6.53
6006 10004 3.702555 GTCACTGTGACCGTGCGC 61.703 66.667 26.50 0.00 41.37 6.09
6007 10005 2.279186 TGTCACTGTGACCGTGCG 60.279 61.111 31.58 0.00 46.40 5.34
6009 10007 1.956170 GCCTGTCACTGTGACCGTG 60.956 63.158 31.58 22.00 46.40 4.94
6012 10010 2.357517 CCGCCTGTCACTGTGACC 60.358 66.667 31.58 18.65 46.40 4.02
6036 10038 0.320508 GAGTCTTGGGTGGGTCGTTC 60.321 60.000 0.00 0.00 0.00 3.95
6131 10152 4.093291 AGCGCAGGCAGAGGAAGG 62.093 66.667 11.47 0.00 43.41 3.46
6133 10154 2.999648 AGAGCGCAGGCAGAGGAA 61.000 61.111 11.47 0.00 43.41 3.36
6136 10157 3.819920 TCGAGAGCGCAGGCAGAG 61.820 66.667 11.47 0.00 43.41 3.35
6137 10158 4.121669 GTCGAGAGCGCAGGCAGA 62.122 66.667 11.47 0.00 43.41 4.26
6145 10166 3.479269 GGGTTTGCGTCGAGAGCG 61.479 66.667 0.00 0.00 37.44 5.03
6146 10167 3.119096 GGGGTTTGCGTCGAGAGC 61.119 66.667 0.00 5.91 0.00 4.09
6147 10168 2.434359 GGGGGTTTGCGTCGAGAG 60.434 66.667 0.00 0.00 0.00 3.20
6148 10169 4.367023 CGGGGGTTTGCGTCGAGA 62.367 66.667 0.00 0.00 0.00 4.04
6566 10613 1.982938 GAGGTACTGGTGGCGGACT 60.983 63.158 0.00 0.00 41.55 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.