Multiple sequence alignment - TraesCS3D01G406700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G406700 chr3D 100.000 2669 0 0 1 2669 520594464 520597132 0.000000e+00 4929.0
1 TraesCS3D01G406700 chr3D 91.331 496 34 4 1717 2208 520040103 520039613 0.000000e+00 669.0
2 TraesCS3D01G406700 chr3D 89.597 298 29 2 1395 1690 520075542 520075245 6.970000e-101 377.0
3 TraesCS3D01G406700 chr3D 73.604 1110 235 38 594 1669 567902766 567903851 9.020000e-100 374.0
4 TraesCS3D01G406700 chr3D 79.286 420 68 17 579 984 565641946 565642360 2.620000e-70 276.0
5 TraesCS3D01G406700 chr3D 72.818 802 189 22 883 1669 568034178 568034965 2.050000e-61 246.0
6 TraesCS3D01G406700 chr3D 87.069 116 10 3 2184 2298 520442138 520442249 2.790000e-25 126.0
7 TraesCS3D01G406700 chr3D 94.366 71 3 1 2584 2653 519961674 519961604 1.010000e-19 108.0
8 TraesCS3D01G406700 chr3D 91.837 49 3 1 998 1045 567906489 567906537 1.710000e-07 67.6
9 TraesCS3D01G406700 chr3A 94.038 2080 83 13 577 2651 655920325 655922368 0.000000e+00 3116.0
10 TraesCS3D01G406700 chr3A 95.262 1013 31 6 1640 2651 658200356 658199360 0.000000e+00 1589.0
11 TraesCS3D01G406700 chr3A 91.809 818 58 4 1395 2208 655538829 655538017 0.000000e+00 1131.0
12 TraesCS3D01G406700 chr3A 94.321 405 19 3 2251 2651 655538011 655537607 3.770000e-173 617.0
13 TraesCS3D01G406700 chr3A 75.091 1104 227 37 595 1669 701359389 701360473 3.110000e-129 472.0
14 TraesCS3D01G406700 chr3A 74.334 1126 237 38 579 1670 700739309 700740416 5.280000e-117 431.0
15 TraesCS3D01G406700 chr3A 82.237 456 77 4 590 1042 702407841 702407387 8.960000e-105 390.0
16 TraesCS3D01G406700 chr3A 87.786 131 3 6 451 579 655920178 655920297 9.960000e-30 141.0
17 TraesCS3D01G406700 chr3B 93.531 2087 89 15 580 2653 685630687 685632740 0.000000e+00 3064.0
18 TraesCS3D01G406700 chr3B 93.531 2087 87 15 580 2653 685659182 685661233 0.000000e+00 3062.0
19 TraesCS3D01G406700 chr3B 92.925 1993 118 14 577 2557 685471608 685473589 0.000000e+00 2878.0
20 TraesCS3D01G406700 chr3B 77.273 1166 217 33 591 1726 601373029 601374176 2.240000e-180 641.0
21 TraesCS3D01G406700 chr3B 92.875 393 14 6 2267 2658 684502741 684502362 2.320000e-155 558.0
22 TraesCS3D01G406700 chr3B 87.770 417 30 8 2252 2653 685477393 685477803 4.020000e-128 468.0
23 TraesCS3D01G406700 chr3B 83.367 493 49 18 2184 2653 601375159 601375641 2.460000e-115 425.0
24 TraesCS3D01G406700 chr3B 88.652 282 22 5 1934 2208 684503048 684502770 4.260000e-88 335.0
25 TraesCS3D01G406700 chr3B 85.762 302 31 4 1889 2182 685473605 685473902 2.580000e-80 309.0
26 TraesCS3D01G406700 chr3B 84.337 166 13 7 425 579 685658988 685659151 1.660000e-32 150.0
27 TraesCS3D01G406700 chr3B 88.372 129 7 2 451 579 685471460 685471580 5.950000e-32 148.0
28 TraesCS3D01G406700 chr3B 83.735 166 14 7 425 579 685630493 685630656 7.700000e-31 145.0
29 TraesCS3D01G406700 chr3B 82.292 96 6 5 451 546 684625415 684625331 3.690000e-09 73.1
30 TraesCS3D01G406700 chr3B 78.182 110 16 7 1282 1384 754303070 754303178 2.220000e-06 63.9
31 TraesCS3D01G406700 chrUn 74.661 1105 230 36 595 1669 340249228 340248144 6.780000e-121 444.0
32 TraesCS3D01G406700 chrUn 96.970 264 7 1 2388 2651 477791309 477791571 2.440000e-120 442.0
33 TraesCS3D01G406700 chr6B 91.787 207 15 2 130 335 705556704 705556499 1.210000e-73 287.0
34 TraesCS3D01G406700 chr7D 84.586 266 41 0 594 859 41601800 41601535 5.670000e-67 265.0
35 TraesCS3D01G406700 chr4A 83.688 282 41 4 582 859 661280703 661280423 7.330000e-66 261.0
36 TraesCS3D01G406700 chr7B 88.462 208 16 4 129 335 601319694 601319894 7.380000e-61 244.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G406700 chr3D 520594464 520597132 2668 False 4929.00 4929 100.00000 1 2669 1 chr3D.!!$F2 2668
1 TraesCS3D01G406700 chr3D 568034178 568034965 787 False 246.00 246 72.81800 883 1669 1 chr3D.!!$F4 786
2 TraesCS3D01G406700 chr3D 567902766 567906537 3771 False 220.80 374 82.72050 594 1669 2 chr3D.!!$F5 1075
3 TraesCS3D01G406700 chr3A 655920178 655922368 2190 False 1628.50 3116 90.91200 451 2651 2 chr3A.!!$F3 2200
4 TraesCS3D01G406700 chr3A 658199360 658200356 996 True 1589.00 1589 95.26200 1640 2651 1 chr3A.!!$R1 1011
5 TraesCS3D01G406700 chr3A 655537607 655538829 1222 True 874.00 1131 93.06500 1395 2651 2 chr3A.!!$R3 1256
6 TraesCS3D01G406700 chr3A 701359389 701360473 1084 False 472.00 472 75.09100 595 1669 1 chr3A.!!$F2 1074
7 TraesCS3D01G406700 chr3A 700739309 700740416 1107 False 431.00 431 74.33400 579 1670 1 chr3A.!!$F1 1091
8 TraesCS3D01G406700 chr3B 685658988 685661233 2245 False 1606.00 3062 88.93400 425 2653 2 chr3B.!!$F5 2228
9 TraesCS3D01G406700 chr3B 685630493 685632740 2247 False 1604.50 3064 88.63300 425 2653 2 chr3B.!!$F4 2228
10 TraesCS3D01G406700 chr3B 685471460 685477803 6343 False 950.75 2878 88.70725 451 2653 4 chr3B.!!$F3 2202
11 TraesCS3D01G406700 chr3B 601373029 601375641 2612 False 533.00 641 80.32000 591 2653 2 chr3B.!!$F2 2062
12 TraesCS3D01G406700 chr3B 684502362 684503048 686 True 446.50 558 90.76350 1934 2658 2 chr3B.!!$R2 724
13 TraesCS3D01G406700 chrUn 340248144 340249228 1084 True 444.00 444 74.66100 595 1669 1 chrUn.!!$R1 1074

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
313 314 0.030908 GGGCGACTCGTGGAGATAAG 59.969 60.0 0.0 0.00 33.32 1.73 F
419 420 0.163788 CAACCGTTGCTTGCTAGTCG 59.836 55.0 0.0 0.55 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1459 1577 0.609957 TCCGAAGAAGCGACTACCCA 60.610 55.0 0.0 0.0 0.0 4.51 R
1680 1836 1.073964 CAGAAGCACCACATCACTCG 58.926 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.817318 AAAAAGAAGTGGTTCCAGCAAA 57.183 36.364 0.00 0.00 32.48 3.68
38 39 4.817318 AAAAGAAGTGGTTCCAGCAAAA 57.183 36.364 0.00 0.00 32.48 2.44
39 40 4.817318 AAAGAAGTGGTTCCAGCAAAAA 57.183 36.364 0.00 0.00 32.48 1.94
73 74 0.614812 AAAAATCCATGGCAGCCACC 59.385 50.000 19.10 0.00 35.80 4.61
74 75 1.606885 AAAATCCATGGCAGCCACCG 61.607 55.000 19.10 11.31 35.80 4.94
94 95 2.672996 GTTGCCGCTCACCACCAT 60.673 61.111 0.00 0.00 0.00 3.55
95 96 2.359850 TTGCCGCTCACCACCATC 60.360 61.111 0.00 0.00 0.00 3.51
96 97 4.758251 TGCCGCTCACCACCATCG 62.758 66.667 0.00 0.00 0.00 3.84
97 98 4.760047 GCCGCTCACCACCATCGT 62.760 66.667 0.00 0.00 0.00 3.73
98 99 2.509336 CCGCTCACCACCATCGTC 60.509 66.667 0.00 0.00 0.00 4.20
99 100 2.880879 CGCTCACCACCATCGTCG 60.881 66.667 0.00 0.00 0.00 5.12
100 101 3.188786 GCTCACCACCATCGTCGC 61.189 66.667 0.00 0.00 0.00 5.19
101 102 2.509336 CTCACCACCATCGTCGCC 60.509 66.667 0.00 0.00 0.00 5.54
102 103 4.429212 TCACCACCATCGTCGCCG 62.429 66.667 0.00 0.00 0.00 6.46
105 106 4.752879 CCACCATCGTCGCCGGTT 62.753 66.667 1.90 0.00 33.95 4.44
106 107 2.182284 CACCATCGTCGCCGGTTA 59.818 61.111 1.90 0.00 33.95 2.85
107 108 1.446445 CACCATCGTCGCCGGTTAA 60.446 57.895 1.90 0.00 33.95 2.01
108 109 1.015085 CACCATCGTCGCCGGTTAAA 61.015 55.000 1.90 0.00 33.95 1.52
109 110 0.738412 ACCATCGTCGCCGGTTAAAG 60.738 55.000 1.90 0.00 33.95 1.85
110 111 1.347221 CATCGTCGCCGGTTAAAGC 59.653 57.895 1.90 0.00 33.95 3.51
117 118 2.776659 GCCGGTTAAAGCGAATCCT 58.223 52.632 1.90 0.00 42.41 3.24
118 119 0.656259 GCCGGTTAAAGCGAATCCTC 59.344 55.000 1.90 0.00 42.41 3.71
119 120 1.296727 CCGGTTAAAGCGAATCCTCC 58.703 55.000 0.00 0.00 42.41 4.30
120 121 1.296727 CGGTTAAAGCGAATCCTCCC 58.703 55.000 0.00 0.00 42.41 4.30
121 122 1.676746 GGTTAAAGCGAATCCTCCCC 58.323 55.000 0.00 0.00 0.00 4.81
122 123 1.676746 GTTAAAGCGAATCCTCCCCC 58.323 55.000 0.00 0.00 0.00 5.40
137 138 4.268757 CCCCCTCCTCTCCCAAAA 57.731 61.111 0.00 0.00 0.00 2.44
138 139 2.728683 CCCCCTCCTCTCCCAAAAT 58.271 57.895 0.00 0.00 0.00 1.82
139 140 1.907240 CCCCCTCCTCTCCCAAAATA 58.093 55.000 0.00 0.00 0.00 1.40
140 141 1.777272 CCCCCTCCTCTCCCAAAATAG 59.223 57.143 0.00 0.00 0.00 1.73
141 142 1.143889 CCCCTCCTCTCCCAAAATAGC 59.856 57.143 0.00 0.00 0.00 2.97
142 143 1.202698 CCCTCCTCTCCCAAAATAGCG 60.203 57.143 0.00 0.00 0.00 4.26
143 144 1.587547 CTCCTCTCCCAAAATAGCGC 58.412 55.000 0.00 0.00 0.00 5.92
144 145 0.180406 TCCTCTCCCAAAATAGCGCC 59.820 55.000 2.29 0.00 0.00 6.53
145 146 0.819666 CCTCTCCCAAAATAGCGCCC 60.820 60.000 2.29 0.00 0.00 6.13
146 147 0.107214 CTCTCCCAAAATAGCGCCCA 60.107 55.000 2.29 0.00 0.00 5.36
147 148 0.550914 TCTCCCAAAATAGCGCCCAT 59.449 50.000 2.29 0.00 0.00 4.00
148 149 1.064017 TCTCCCAAAATAGCGCCCATT 60.064 47.619 2.29 0.40 0.00 3.16
149 150 1.756538 CTCCCAAAATAGCGCCCATTT 59.243 47.619 2.29 7.85 0.00 2.32
150 151 1.480137 TCCCAAAATAGCGCCCATTTG 59.520 47.619 15.87 16.77 33.62 2.32
151 152 1.289276 CCAAAATAGCGCCCATTTGC 58.711 50.000 18.56 0.00 32.73 3.68
161 162 3.142838 CCATTTGCGGGGAGGCTG 61.143 66.667 0.00 0.00 0.00 4.85
162 163 3.830192 CATTTGCGGGGAGGCTGC 61.830 66.667 0.00 0.00 0.00 5.25
176 177 4.147449 CTGCCGCTGGATGGACGA 62.147 66.667 0.00 0.00 0.00 4.20
177 178 4.451150 TGCCGCTGGATGGACGAC 62.451 66.667 0.00 0.00 0.00 4.34
179 180 4.873129 CCGCTGGATGGACGACGG 62.873 72.222 0.00 0.00 0.00 4.79
180 181 4.873129 CGCTGGATGGACGACGGG 62.873 72.222 0.00 0.00 0.00 5.28
182 183 3.770040 CTGGATGGACGACGGGCA 61.770 66.667 0.00 0.00 0.00 5.36
183 184 3.723235 CTGGATGGACGACGGGCAG 62.723 68.421 0.00 0.00 0.00 4.85
184 185 4.530857 GGATGGACGACGGGCAGG 62.531 72.222 0.00 0.00 0.00 4.85
196 197 4.052518 GGCAGGCTGGTGTGGGAT 62.053 66.667 17.64 0.00 0.00 3.85
197 198 2.439156 GCAGGCTGGTGTGGGATC 60.439 66.667 17.64 0.00 0.00 3.36
198 199 2.124983 CAGGCTGGTGTGGGATCG 60.125 66.667 6.61 0.00 0.00 3.69
199 200 2.284625 AGGCTGGTGTGGGATCGA 60.285 61.111 0.00 0.00 0.00 3.59
200 201 1.690633 AGGCTGGTGTGGGATCGAT 60.691 57.895 0.00 0.00 0.00 3.59
201 202 1.524621 GGCTGGTGTGGGATCGATG 60.525 63.158 0.54 0.00 0.00 3.84
202 203 1.524621 GCTGGTGTGGGATCGATGG 60.525 63.158 0.54 0.00 0.00 3.51
203 204 1.524621 CTGGTGTGGGATCGATGGC 60.525 63.158 0.54 0.00 0.00 4.40
204 205 2.588877 GGTGTGGGATCGATGGCG 60.589 66.667 0.54 0.00 39.35 5.69
205 206 2.588877 GTGTGGGATCGATGGCGG 60.589 66.667 0.54 0.00 38.28 6.13
206 207 3.080765 TGTGGGATCGATGGCGGT 61.081 61.111 0.54 0.00 38.28 5.68
207 208 2.280186 GTGGGATCGATGGCGGTC 60.280 66.667 0.54 0.00 46.71 4.79
221 222 2.264794 GGTCATCACCGGCGAACT 59.735 61.111 9.30 0.00 31.06 3.01
222 223 1.514087 GGTCATCACCGGCGAACTA 59.486 57.895 9.30 0.00 31.06 2.24
223 224 0.104304 GGTCATCACCGGCGAACTAT 59.896 55.000 9.30 0.00 31.06 2.12
224 225 1.488527 GTCATCACCGGCGAACTATC 58.511 55.000 9.30 0.00 0.00 2.08
225 226 0.387929 TCATCACCGGCGAACTATCC 59.612 55.000 9.30 0.00 0.00 2.59
226 227 0.389391 CATCACCGGCGAACTATCCT 59.611 55.000 9.30 0.00 0.00 3.24
227 228 0.389391 ATCACCGGCGAACTATCCTG 59.611 55.000 9.30 0.00 0.00 3.86
228 229 1.227263 CACCGGCGAACTATCCTGG 60.227 63.158 9.30 0.00 0.00 4.45
229 230 1.380785 ACCGGCGAACTATCCTGGA 60.381 57.895 9.30 0.00 0.00 3.86
230 231 1.364171 CCGGCGAACTATCCTGGAG 59.636 63.158 9.30 0.00 0.00 3.86
231 232 1.364171 CGGCGAACTATCCTGGAGG 59.636 63.158 0.00 0.01 0.00 4.30
232 233 1.069935 GGCGAACTATCCTGGAGGC 59.930 63.158 1.52 0.00 34.44 4.70
233 234 1.403687 GGCGAACTATCCTGGAGGCT 61.404 60.000 1.52 0.00 34.44 4.58
234 235 0.466124 GCGAACTATCCTGGAGGCTT 59.534 55.000 1.52 0.00 34.44 4.35
235 236 1.539280 GCGAACTATCCTGGAGGCTTC 60.539 57.143 1.52 1.62 34.44 3.86
236 237 1.069358 CGAACTATCCTGGAGGCTTCC 59.931 57.143 8.18 8.18 44.31 3.46
254 255 1.503542 CGCAGGGAACAAGATGTGC 59.496 57.895 0.00 0.00 0.00 4.57
255 256 1.503542 GCAGGGAACAAGATGTGCG 59.496 57.895 0.00 0.00 0.00 5.34
256 257 0.955428 GCAGGGAACAAGATGTGCGA 60.955 55.000 0.00 0.00 0.00 5.10
257 258 1.081892 CAGGGAACAAGATGTGCGAG 58.918 55.000 0.00 0.00 0.00 5.03
258 259 0.036010 AGGGAACAAGATGTGCGAGG 60.036 55.000 0.00 0.00 0.00 4.63
259 260 0.036388 GGGAACAAGATGTGCGAGGA 60.036 55.000 0.00 0.00 0.00 3.71
260 261 1.363744 GGAACAAGATGTGCGAGGAG 58.636 55.000 0.00 0.00 0.00 3.69
261 262 1.066858 GGAACAAGATGTGCGAGGAGA 60.067 52.381 0.00 0.00 0.00 3.71
262 263 2.419297 GGAACAAGATGTGCGAGGAGAT 60.419 50.000 0.00 0.00 0.00 2.75
263 264 3.181475 GGAACAAGATGTGCGAGGAGATA 60.181 47.826 0.00 0.00 0.00 1.98
264 265 4.433615 GAACAAGATGTGCGAGGAGATAA 58.566 43.478 0.00 0.00 0.00 1.75
265 266 4.052159 ACAAGATGTGCGAGGAGATAAG 57.948 45.455 0.00 0.00 0.00 1.73
266 267 3.701542 ACAAGATGTGCGAGGAGATAAGA 59.298 43.478 0.00 0.00 0.00 2.10
267 268 4.160439 ACAAGATGTGCGAGGAGATAAGAA 59.840 41.667 0.00 0.00 0.00 2.52
268 269 5.111989 CAAGATGTGCGAGGAGATAAGAAA 58.888 41.667 0.00 0.00 0.00 2.52
269 270 5.344743 AGATGTGCGAGGAGATAAGAAAA 57.655 39.130 0.00 0.00 0.00 2.29
270 271 5.355596 AGATGTGCGAGGAGATAAGAAAAG 58.644 41.667 0.00 0.00 0.00 2.27
271 272 3.861840 TGTGCGAGGAGATAAGAAAAGG 58.138 45.455 0.00 0.00 0.00 3.11
272 273 3.513912 TGTGCGAGGAGATAAGAAAAGGA 59.486 43.478 0.00 0.00 0.00 3.36
273 274 3.866327 GTGCGAGGAGATAAGAAAAGGAC 59.134 47.826 0.00 0.00 0.00 3.85
274 275 3.513912 TGCGAGGAGATAAGAAAAGGACA 59.486 43.478 0.00 0.00 0.00 4.02
275 276 4.116238 GCGAGGAGATAAGAAAAGGACAG 58.884 47.826 0.00 0.00 0.00 3.51
276 277 4.116238 CGAGGAGATAAGAAAAGGACAGC 58.884 47.826 0.00 0.00 0.00 4.40
277 278 4.382040 CGAGGAGATAAGAAAAGGACAGCA 60.382 45.833 0.00 0.00 0.00 4.41
278 279 5.096443 AGGAGATAAGAAAAGGACAGCAG 57.904 43.478 0.00 0.00 0.00 4.24
279 280 3.625313 GGAGATAAGAAAAGGACAGCAGC 59.375 47.826 0.00 0.00 0.00 5.25
280 281 3.265791 AGATAAGAAAAGGACAGCAGCG 58.734 45.455 0.00 0.00 0.00 5.18
281 282 2.831685 TAAGAAAAGGACAGCAGCGA 57.168 45.000 0.00 0.00 0.00 4.93
282 283 1.967319 AAGAAAAGGACAGCAGCGAA 58.033 45.000 0.00 0.00 0.00 4.70
283 284 2.191128 AGAAAAGGACAGCAGCGAAT 57.809 45.000 0.00 0.00 0.00 3.34
284 285 1.808945 AGAAAAGGACAGCAGCGAATG 59.191 47.619 0.00 0.00 0.00 2.67
285 286 1.806542 GAAAAGGACAGCAGCGAATGA 59.193 47.619 0.00 0.00 0.00 2.57
286 287 1.896220 AAAGGACAGCAGCGAATGAA 58.104 45.000 0.00 0.00 0.00 2.57
287 288 2.119801 AAGGACAGCAGCGAATGAAT 57.880 45.000 0.00 0.00 0.00 2.57
288 289 1.376543 AGGACAGCAGCGAATGAATG 58.623 50.000 0.00 0.00 0.00 2.67
289 290 0.379669 GGACAGCAGCGAATGAATGG 59.620 55.000 0.00 0.00 0.00 3.16
290 291 1.372582 GACAGCAGCGAATGAATGGA 58.627 50.000 0.00 0.00 0.00 3.41
291 292 1.945394 GACAGCAGCGAATGAATGGAT 59.055 47.619 0.00 0.00 0.00 3.41
292 293 3.133691 GACAGCAGCGAATGAATGGATA 58.866 45.455 0.00 0.00 0.00 2.59
293 294 3.136763 ACAGCAGCGAATGAATGGATAG 58.863 45.455 0.00 0.00 0.00 2.08
294 295 2.483106 CAGCAGCGAATGAATGGATAGG 59.517 50.000 0.00 0.00 0.00 2.57
295 296 1.808945 GCAGCGAATGAATGGATAGGG 59.191 52.381 0.00 0.00 0.00 3.53
296 297 2.430465 CAGCGAATGAATGGATAGGGG 58.570 52.381 0.00 0.00 0.00 4.79
297 298 1.168714 GCGAATGAATGGATAGGGGC 58.831 55.000 0.00 0.00 0.00 5.80
298 299 1.442769 CGAATGAATGGATAGGGGCG 58.557 55.000 0.00 0.00 0.00 6.13
299 300 1.001974 CGAATGAATGGATAGGGGCGA 59.998 52.381 0.00 0.00 0.00 5.54
300 301 2.427506 GAATGAATGGATAGGGGCGAC 58.572 52.381 0.00 0.00 0.00 5.19
301 302 1.734655 ATGAATGGATAGGGGCGACT 58.265 50.000 0.00 0.00 0.00 4.18
302 303 1.048601 TGAATGGATAGGGGCGACTC 58.951 55.000 0.00 0.00 0.00 3.36
303 304 0.038159 GAATGGATAGGGGCGACTCG 60.038 60.000 0.00 0.00 34.16 4.18
304 305 0.759436 AATGGATAGGGGCGACTCGT 60.759 55.000 0.00 0.00 34.16 4.18
305 306 1.464376 ATGGATAGGGGCGACTCGTG 61.464 60.000 0.00 0.00 34.16 4.35
306 307 2.728817 GATAGGGGCGACTCGTGG 59.271 66.667 0.00 0.00 34.16 4.94
307 308 1.826921 GATAGGGGCGACTCGTGGA 60.827 63.158 0.00 0.00 34.16 4.02
308 309 1.797211 GATAGGGGCGACTCGTGGAG 61.797 65.000 0.00 0.00 34.16 3.86
309 310 2.280404 ATAGGGGCGACTCGTGGAGA 62.280 60.000 0.00 0.00 34.16 3.71
310 311 2.280404 TAGGGGCGACTCGTGGAGAT 62.280 60.000 0.00 0.00 34.16 2.75
311 312 1.826921 GGGGCGACTCGTGGAGATA 60.827 63.158 0.00 0.00 33.32 1.98
312 313 1.389609 GGGGCGACTCGTGGAGATAA 61.390 60.000 0.00 0.00 33.32 1.75
313 314 0.030908 GGGCGACTCGTGGAGATAAG 59.969 60.000 0.00 0.00 33.32 1.73
314 315 1.022735 GGCGACTCGTGGAGATAAGA 58.977 55.000 0.00 0.00 33.32 2.10
315 316 1.404391 GGCGACTCGTGGAGATAAGAA 59.596 52.381 0.00 0.00 33.32 2.52
316 317 2.541999 GGCGACTCGTGGAGATAAGAAG 60.542 54.545 0.00 0.00 33.32 2.85
317 318 2.355132 GCGACTCGTGGAGATAAGAAGA 59.645 50.000 0.00 0.00 33.32 2.87
318 319 3.181499 GCGACTCGTGGAGATAAGAAGAA 60.181 47.826 0.00 0.00 33.32 2.52
319 320 4.498345 GCGACTCGTGGAGATAAGAAGAAT 60.498 45.833 0.00 0.00 33.32 2.40
320 321 5.277876 GCGACTCGTGGAGATAAGAAGAATA 60.278 44.000 0.00 0.00 33.32 1.75
321 322 6.137415 CGACTCGTGGAGATAAGAAGAATAC 58.863 44.000 0.00 0.00 33.32 1.89
322 323 6.017770 CGACTCGTGGAGATAAGAAGAATACT 60.018 42.308 0.00 0.00 33.32 2.12
323 324 7.467539 CGACTCGTGGAGATAAGAAGAATACTT 60.468 40.741 0.00 0.00 34.80 2.24
324 325 8.749026 ACTCGTGGAGATAAGAAGAATACTTA 57.251 34.615 0.00 0.00 33.45 2.24
325 326 9.186837 ACTCGTGGAGATAAGAAGAATACTTAA 57.813 33.333 0.00 0.00 33.45 1.85
326 327 9.672086 CTCGTGGAGATAAGAAGAATACTTAAG 57.328 37.037 0.00 0.00 36.39 1.85
327 328 8.136165 TCGTGGAGATAAGAAGAATACTTAAGC 58.864 37.037 1.29 0.00 36.39 3.09
328 329 7.113684 CGTGGAGATAAGAAGAATACTTAAGCG 59.886 40.741 1.29 0.00 36.39 4.68
329 330 7.382759 GTGGAGATAAGAAGAATACTTAAGCGG 59.617 40.741 1.29 0.00 36.39 5.52
330 331 7.069578 TGGAGATAAGAAGAATACTTAAGCGGT 59.930 37.037 1.29 0.00 36.39 5.68
331 332 7.382759 GGAGATAAGAAGAATACTTAAGCGGTG 59.617 40.741 1.29 0.00 36.39 4.94
332 333 7.210873 AGATAAGAAGAATACTTAAGCGGTGG 58.789 38.462 1.29 0.00 36.39 4.61
333 334 4.820894 AGAAGAATACTTAAGCGGTGGT 57.179 40.909 1.29 0.00 36.39 4.16
334 335 4.504858 AGAAGAATACTTAAGCGGTGGTG 58.495 43.478 1.29 0.00 36.39 4.17
335 336 3.261981 AGAATACTTAAGCGGTGGTGG 57.738 47.619 1.29 0.00 0.00 4.61
336 337 1.669265 GAATACTTAAGCGGTGGTGGC 59.331 52.381 1.29 0.00 0.00 5.01
337 338 0.461339 ATACTTAAGCGGTGGTGGCG 60.461 55.000 1.29 0.00 35.00 5.69
338 339 3.799755 CTTAAGCGGTGGTGGCGC 61.800 66.667 0.00 0.00 35.00 6.53
339 340 4.627801 TTAAGCGGTGGTGGCGCA 62.628 61.111 10.83 0.00 35.00 6.09
352 353 3.849953 GCGCACCGGCTCTAAACG 61.850 66.667 0.30 0.00 38.10 3.60
353 354 2.431942 CGCACCGGCTCTAAACGT 60.432 61.111 0.00 0.00 38.10 3.99
354 355 2.025418 CGCACCGGCTCTAAACGTT 61.025 57.895 0.00 0.00 38.10 3.99
355 356 1.562575 CGCACCGGCTCTAAACGTTT 61.563 55.000 18.90 18.90 38.10 3.60
356 357 1.431496 GCACCGGCTCTAAACGTTTA 58.569 50.000 19.12 19.12 36.96 2.01
357 358 1.127397 GCACCGGCTCTAAACGTTTAC 59.873 52.381 16.59 7.54 36.96 2.01
358 359 1.728425 CACCGGCTCTAAACGTTTACC 59.272 52.381 16.59 14.83 0.00 2.85
359 360 1.620323 ACCGGCTCTAAACGTTTACCT 59.380 47.619 16.59 0.00 0.00 3.08
360 361 1.997606 CCGGCTCTAAACGTTTACCTG 59.002 52.381 16.59 9.41 0.00 4.00
361 362 1.392510 CGGCTCTAAACGTTTACCTGC 59.607 52.381 16.59 17.97 0.00 4.85
362 363 2.696506 GGCTCTAAACGTTTACCTGCT 58.303 47.619 16.59 0.00 0.00 4.24
363 364 3.072211 GGCTCTAAACGTTTACCTGCTT 58.928 45.455 16.59 0.00 0.00 3.91
364 365 4.248058 GGCTCTAAACGTTTACCTGCTTA 58.752 43.478 16.59 0.00 0.00 3.09
365 366 4.692155 GGCTCTAAACGTTTACCTGCTTAA 59.308 41.667 16.59 0.00 0.00 1.85
366 367 5.353400 GGCTCTAAACGTTTACCTGCTTAAT 59.647 40.000 16.59 0.00 0.00 1.40
367 368 6.128090 GGCTCTAAACGTTTACCTGCTTAATT 60.128 38.462 16.59 0.00 0.00 1.40
368 369 7.303261 GCTCTAAACGTTTACCTGCTTAATTT 58.697 34.615 16.59 0.00 0.00 1.82
369 370 7.270579 GCTCTAAACGTTTACCTGCTTAATTTG 59.729 37.037 16.59 3.11 0.00 2.32
370 371 7.586747 TCTAAACGTTTACCTGCTTAATTTGG 58.413 34.615 16.59 2.70 0.00 3.28
371 372 4.776795 ACGTTTACCTGCTTAATTTGGG 57.223 40.909 0.00 0.00 0.00 4.12
372 373 3.508402 ACGTTTACCTGCTTAATTTGGGG 59.492 43.478 0.00 0.00 0.00 4.96
373 374 3.508402 CGTTTACCTGCTTAATTTGGGGT 59.492 43.478 0.00 0.00 0.00 4.95
374 375 4.617298 CGTTTACCTGCTTAATTTGGGGTG 60.617 45.833 0.00 0.00 0.00 4.61
375 376 2.694616 ACCTGCTTAATTTGGGGTGT 57.305 45.000 0.00 0.00 0.00 4.16
376 377 2.247358 ACCTGCTTAATTTGGGGTGTG 58.753 47.619 0.00 0.00 0.00 3.82
377 378 2.247358 CCTGCTTAATTTGGGGTGTGT 58.753 47.619 0.00 0.00 0.00 3.72
378 379 2.029110 CCTGCTTAATTTGGGGTGTGTG 60.029 50.000 0.00 0.00 0.00 3.82
379 380 2.627699 CTGCTTAATTTGGGGTGTGTGT 59.372 45.455 0.00 0.00 0.00 3.72
380 381 2.363680 TGCTTAATTTGGGGTGTGTGTG 59.636 45.455 0.00 0.00 0.00 3.82
381 382 2.866065 GCTTAATTTGGGGTGTGTGTGC 60.866 50.000 0.00 0.00 0.00 4.57
382 383 1.333177 TAATTTGGGGTGTGTGTGCC 58.667 50.000 0.00 0.00 0.00 5.01
383 384 1.406860 AATTTGGGGTGTGTGTGCCC 61.407 55.000 0.00 0.00 44.09 5.36
384 385 2.595954 ATTTGGGGTGTGTGTGCCCA 62.596 55.000 0.00 0.00 46.59 5.36
385 386 3.730028 TTGGGGTGTGTGTGCCCAG 62.730 63.158 0.00 0.00 46.59 4.45
386 387 4.974721 GGGGTGTGTGTGCCCAGG 62.975 72.222 1.82 0.00 46.59 4.45
387 388 3.884774 GGGTGTGTGTGCCCAGGA 61.885 66.667 0.00 0.00 44.23 3.86
388 389 2.594592 GGTGTGTGTGCCCAGGAC 60.595 66.667 0.00 0.00 0.00 3.85
389 390 2.594592 GTGTGTGTGCCCAGGACC 60.595 66.667 0.00 0.00 0.00 4.46
390 391 4.248842 TGTGTGTGCCCAGGACCG 62.249 66.667 0.00 0.00 0.00 4.79
391 392 4.250305 GTGTGTGCCCAGGACCGT 62.250 66.667 0.00 0.00 0.00 4.83
392 393 3.484806 TGTGTGCCCAGGACCGTT 61.485 61.111 0.00 0.00 0.00 4.44
393 394 2.668550 GTGTGCCCAGGACCGTTC 60.669 66.667 0.00 0.00 0.00 3.95
394 395 4.308458 TGTGCCCAGGACCGTTCG 62.308 66.667 0.00 0.00 0.00 3.95
398 399 4.760047 CCCAGGACCGTTCGCCAG 62.760 72.222 0.00 0.00 0.00 4.85
403 404 3.723348 GACCGTTCGCCAGCCAAC 61.723 66.667 0.00 0.00 0.00 3.77
407 408 3.284449 GTTCGCCAGCCAACCGTT 61.284 61.111 0.00 0.00 0.00 4.44
408 409 3.283684 TTCGCCAGCCAACCGTTG 61.284 61.111 4.12 4.12 0.00 4.10
411 412 3.605664 GCCAGCCAACCGTTGCTT 61.606 61.111 5.68 0.00 35.12 3.91
412 413 2.336088 CCAGCCAACCGTTGCTTG 59.664 61.111 5.68 6.09 35.12 4.01
413 414 2.355009 CAGCCAACCGTTGCTTGC 60.355 61.111 5.68 4.47 35.12 4.01
414 415 2.519302 AGCCAACCGTTGCTTGCT 60.519 55.556 5.68 6.70 32.94 3.91
415 416 1.228124 AGCCAACCGTTGCTTGCTA 60.228 52.632 10.65 0.00 32.94 3.49
416 417 1.210155 GCCAACCGTTGCTTGCTAG 59.790 57.895 5.68 0.00 0.00 3.42
417 418 1.515521 GCCAACCGTTGCTTGCTAGT 61.516 55.000 5.68 0.00 0.00 2.57
418 419 0.517316 CCAACCGTTGCTTGCTAGTC 59.483 55.000 5.68 0.00 0.00 2.59
419 420 0.163788 CAACCGTTGCTTGCTAGTCG 59.836 55.000 0.00 0.55 0.00 4.18
420 421 1.566018 AACCGTTGCTTGCTAGTCGC 61.566 55.000 0.00 0.00 39.77 5.19
421 422 2.391821 CGTTGCTTGCTAGTCGCG 59.608 61.111 0.00 0.00 43.27 5.87
422 423 2.372690 CGTTGCTTGCTAGTCGCGT 61.373 57.895 5.77 0.00 43.27 6.01
423 424 1.416434 GTTGCTTGCTAGTCGCGTC 59.584 57.895 5.77 0.00 43.27 5.19
427 428 1.944709 TGCTTGCTAGTCGCGTCTATA 59.055 47.619 13.32 3.82 43.27 1.31
481 490 1.276989 AGCCCAGTCCAAATGCATTTG 59.723 47.619 35.14 35.14 45.04 2.32
496 505 3.194329 TGCATTTGTGTTGTTTCTCCACA 59.806 39.130 0.00 0.00 37.32 4.17
600 648 0.489567 CCTATCCTACCAGGCCTCCT 59.510 60.000 0.00 0.00 34.61 3.69
875 938 1.360393 ACTTTGTCAGGCCCCCTTCA 61.360 55.000 0.00 0.00 0.00 3.02
964 1048 0.525668 CGGTGACTCGTCAGTATGCC 60.526 60.000 0.00 0.00 40.75 4.40
1133 1224 2.904905 GCCACGGTGCATAGGGTA 59.095 61.111 1.68 0.00 0.00 3.69
1218 1327 3.118334 ACAAGGAGCAGAATGAGAGGATG 60.118 47.826 0.00 0.00 39.69 3.51
1255 1364 1.227853 ACTGAGTTGTTCCGGCACC 60.228 57.895 0.56 0.00 0.00 5.01
1256 1365 1.966451 CTGAGTTGTTCCGGCACCC 60.966 63.158 0.56 0.00 0.00 4.61
1309 1427 4.205587 GTTTGAGATGGATGGAATGCTCT 58.794 43.478 0.00 0.00 34.76 4.09
1438 1556 2.664851 TCACCACGCGCTTTGGAG 60.665 61.111 26.64 20.14 37.58 3.86
1459 1577 4.034410 AGGGTTTAACACACATGGGTTTT 58.966 39.130 4.56 0.00 38.81 2.43
1680 1836 7.160726 AGCCTTTCATCTGATCTAATAGCTTC 58.839 38.462 0.00 0.00 0.00 3.86
1762 1937 2.383527 CGCGGGCTTCTCTGTTGAC 61.384 63.158 0.00 0.00 0.00 3.18
1783 1959 6.863275 TGACGTATATCAAGTGTGATCAAGT 58.137 36.000 0.00 0.00 43.69 3.16
1971 2198 6.878389 TGAACTGAAAATTTGACTTTGCCTTT 59.122 30.769 0.00 0.00 0.00 3.11
1972 2199 7.390162 TGAACTGAAAATTTGACTTTGCCTTTT 59.610 29.630 0.00 0.00 0.00 2.27
1973 2200 7.686438 ACTGAAAATTTGACTTTGCCTTTTT 57.314 28.000 0.00 0.00 0.00 1.94
2138 2393 3.838244 TGGTCACTTGCTAGTTTCACT 57.162 42.857 0.00 0.00 30.26 3.41
2193 3314 7.026562 TGTTACATTGGATGAAACGCTTTATG 58.973 34.615 0.00 0.00 0.00 1.90
2195 3316 6.751514 ACATTGGATGAAACGCTTTATGTA 57.248 33.333 0.00 0.00 0.00 2.29
2245 3367 3.355378 CATGCTGAGGTTGATTTGGGTA 58.645 45.455 0.00 0.00 0.00 3.69
2246 3368 2.790433 TGCTGAGGTTGATTTGGGTAC 58.210 47.619 0.00 0.00 0.00 3.34
2247 3369 1.737793 GCTGAGGTTGATTTGGGTACG 59.262 52.381 0.00 0.00 0.00 3.67
2248 3370 2.874457 GCTGAGGTTGATTTGGGTACGT 60.874 50.000 0.00 0.00 0.00 3.57
2400 8539 0.601311 GAGTCCGGCATGGCTATGTC 60.601 60.000 18.09 8.39 36.65 3.06
2570 8727 2.813754 TCATGTGCTAGCTTCCACAAAC 59.186 45.455 17.23 3.35 44.22 2.93
2604 8762 4.097892 TCAAACTTCTCTTTGGCAGTTTCC 59.902 41.667 0.00 0.00 37.36 3.13
2620 8778 1.668826 TTCCTGTGCCTCCTATGGTT 58.331 50.000 0.00 0.00 0.00 3.67
2623 8951 2.771943 TCCTGTGCCTCCTATGGTTTAG 59.228 50.000 0.00 0.00 0.00 1.85
2657 8985 7.759489 TGGTTGTTGTTTCATAATAAGAGCT 57.241 32.000 0.00 0.00 0.00 4.09
2658 8986 8.177119 TGGTTGTTGTTTCATAATAAGAGCTT 57.823 30.769 0.00 0.00 0.00 3.74
2659 8987 8.637986 TGGTTGTTGTTTCATAATAAGAGCTTT 58.362 29.630 0.00 0.00 0.00 3.51
2661 8989 8.427774 GTTGTTGTTTCATAATAAGAGCTTTGC 58.572 33.333 0.00 0.00 0.00 3.68
2662 8990 7.885297 TGTTGTTTCATAATAAGAGCTTTGCT 58.115 30.769 0.00 0.00 43.88 3.91
2663 8991 8.359642 TGTTGTTTCATAATAAGAGCTTTGCTT 58.640 29.630 0.00 0.00 39.88 3.91
2664 8992 8.854312 GTTGTTTCATAATAAGAGCTTTGCTTC 58.146 33.333 0.00 0.00 39.88 3.86
2665 8993 7.243487 TGTTTCATAATAAGAGCTTTGCTTCG 58.757 34.615 0.00 0.00 39.88 3.79
2668 8996 6.578944 TCATAATAAGAGCTTTGCTTCGGTA 58.421 36.000 0.00 0.00 39.88 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 4.817318 TTTGCTGGAACCACTTCTTTTT 57.183 36.364 0.00 0.00 0.00 1.94
17 18 4.817318 TTTTGCTGGAACCACTTCTTTT 57.183 36.364 0.00 0.00 0.00 2.27
18 19 4.817318 TTTTTGCTGGAACCACTTCTTT 57.183 36.364 0.00 0.00 0.00 2.52
54 55 0.614812 GGTGGCTGCCATGGATTTTT 59.385 50.000 26.22 0.00 35.28 1.94
55 56 1.606885 CGGTGGCTGCCATGGATTTT 61.607 55.000 26.22 0.00 35.28 1.82
56 57 2.053865 CGGTGGCTGCCATGGATTT 61.054 57.895 26.22 0.00 35.28 2.17
57 58 2.440796 CGGTGGCTGCCATGGATT 60.441 61.111 26.22 0.00 35.28 3.01
77 78 2.672996 ATGGTGGTGAGCGGCAAC 60.673 61.111 1.45 0.00 33.72 4.17
78 79 2.359850 GATGGTGGTGAGCGGCAA 60.360 61.111 1.45 0.00 0.00 4.52
79 80 4.758251 CGATGGTGGTGAGCGGCA 62.758 66.667 1.45 0.00 0.00 5.69
80 81 4.760047 ACGATGGTGGTGAGCGGC 62.760 66.667 0.00 0.00 0.00 6.53
81 82 2.509336 GACGATGGTGGTGAGCGG 60.509 66.667 0.00 0.00 0.00 5.52
82 83 2.880879 CGACGATGGTGGTGAGCG 60.881 66.667 0.00 0.00 0.00 5.03
83 84 3.188786 GCGACGATGGTGGTGAGC 61.189 66.667 0.00 0.00 0.00 4.26
84 85 2.509336 GGCGACGATGGTGGTGAG 60.509 66.667 0.00 0.00 0.00 3.51
99 100 0.656259 GAGGATTCGCTTTAACCGGC 59.344 55.000 0.00 0.00 0.00 6.13
100 101 1.296727 GGAGGATTCGCTTTAACCGG 58.703 55.000 0.00 0.00 0.00 5.28
101 102 1.296727 GGGAGGATTCGCTTTAACCG 58.703 55.000 0.00 0.00 33.73 4.44
102 103 1.676746 GGGGAGGATTCGCTTTAACC 58.323 55.000 0.00 0.00 36.57 2.85
103 104 1.676746 GGGGGAGGATTCGCTTTAAC 58.323 55.000 0.00 0.00 36.57 2.01
120 121 1.777272 CTATTTTGGGAGAGGAGGGGG 59.223 57.143 0.00 0.00 0.00 5.40
121 122 1.143889 GCTATTTTGGGAGAGGAGGGG 59.856 57.143 0.00 0.00 0.00 4.79
122 123 1.202698 CGCTATTTTGGGAGAGGAGGG 60.203 57.143 0.00 0.00 0.00 4.30
123 124 1.811941 GCGCTATTTTGGGAGAGGAGG 60.812 57.143 0.00 0.00 0.00 4.30
124 125 1.587547 GCGCTATTTTGGGAGAGGAG 58.412 55.000 0.00 0.00 0.00 3.69
125 126 0.180406 GGCGCTATTTTGGGAGAGGA 59.820 55.000 7.64 0.00 0.00 3.71
126 127 0.819666 GGGCGCTATTTTGGGAGAGG 60.820 60.000 7.64 0.00 0.00 3.69
127 128 0.107214 TGGGCGCTATTTTGGGAGAG 60.107 55.000 7.64 0.00 0.00 3.20
128 129 0.550914 ATGGGCGCTATTTTGGGAGA 59.449 50.000 7.64 0.00 0.00 3.71
129 130 1.402787 AATGGGCGCTATTTTGGGAG 58.597 50.000 7.64 0.00 0.00 4.30
130 131 1.480137 CAAATGGGCGCTATTTTGGGA 59.520 47.619 16.67 0.00 0.00 4.37
131 132 1.938625 CAAATGGGCGCTATTTTGGG 58.061 50.000 16.67 6.36 0.00 4.12
132 133 1.289276 GCAAATGGGCGCTATTTTGG 58.711 50.000 21.80 13.46 0.00 3.28
144 145 3.142838 CAGCCTCCCCGCAAATGG 61.143 66.667 0.00 0.00 0.00 3.16
145 146 3.830192 GCAGCCTCCCCGCAAATG 61.830 66.667 0.00 0.00 0.00 2.32
159 160 4.147449 TCGTCCATCCAGCGGCAG 62.147 66.667 1.45 0.00 0.00 4.85
160 161 4.451150 GTCGTCCATCCAGCGGCA 62.451 66.667 1.45 0.00 0.00 5.69
162 163 4.873129 CCGTCGTCCATCCAGCGG 62.873 72.222 0.00 0.00 0.00 5.52
163 164 4.873129 CCCGTCGTCCATCCAGCG 62.873 72.222 0.00 0.00 0.00 5.18
165 166 3.723235 CTGCCCGTCGTCCATCCAG 62.723 68.421 0.00 0.00 0.00 3.86
166 167 3.770040 CTGCCCGTCGTCCATCCA 61.770 66.667 0.00 0.00 0.00 3.41
167 168 4.530857 CCTGCCCGTCGTCCATCC 62.531 72.222 0.00 0.00 0.00 3.51
179 180 4.052518 ATCCCACACCAGCCTGCC 62.053 66.667 0.00 0.00 0.00 4.85
180 181 2.439156 GATCCCACACCAGCCTGC 60.439 66.667 0.00 0.00 0.00 4.85
181 182 1.976132 ATCGATCCCACACCAGCCTG 61.976 60.000 0.00 0.00 0.00 4.85
182 183 1.690633 ATCGATCCCACACCAGCCT 60.691 57.895 0.00 0.00 0.00 4.58
183 184 1.524621 CATCGATCCCACACCAGCC 60.525 63.158 0.00 0.00 0.00 4.85
184 185 1.524621 CCATCGATCCCACACCAGC 60.525 63.158 0.00 0.00 0.00 4.85
185 186 1.524621 GCCATCGATCCCACACCAG 60.525 63.158 0.00 0.00 0.00 4.00
186 187 2.589540 GCCATCGATCCCACACCA 59.410 61.111 0.00 0.00 0.00 4.17
187 188 2.588877 CGCCATCGATCCCACACC 60.589 66.667 0.00 0.00 38.10 4.16
188 189 2.588877 CCGCCATCGATCCCACAC 60.589 66.667 0.00 0.00 38.10 3.82
189 190 3.080765 ACCGCCATCGATCCCACA 61.081 61.111 0.00 0.00 38.10 4.17
190 191 2.280186 GACCGCCATCGATCCCAC 60.280 66.667 0.00 0.00 38.10 4.61
191 192 2.099652 GATGACCGCCATCGATCCCA 62.100 60.000 0.00 0.00 41.88 4.37
192 193 1.374758 GATGACCGCCATCGATCCC 60.375 63.158 0.00 0.00 41.88 3.85
193 194 4.268687 GATGACCGCCATCGATCC 57.731 61.111 0.00 0.00 41.88 3.36
204 205 0.104304 ATAGTTCGCCGGTGATGACC 59.896 55.000 20.33 7.43 39.14 4.02
205 206 1.488527 GATAGTTCGCCGGTGATGAC 58.511 55.000 20.33 15.18 0.00 3.06
206 207 0.387929 GGATAGTTCGCCGGTGATGA 59.612 55.000 20.33 7.52 0.00 2.92
207 208 0.389391 AGGATAGTTCGCCGGTGATG 59.611 55.000 20.33 0.00 0.00 3.07
208 209 0.389391 CAGGATAGTTCGCCGGTGAT 59.611 55.000 20.33 7.53 0.00 3.06
209 210 1.672854 CCAGGATAGTTCGCCGGTGA 61.673 60.000 15.21 15.21 0.00 4.02
210 211 1.227263 CCAGGATAGTTCGCCGGTG 60.227 63.158 9.28 9.28 0.00 4.94
211 212 1.380785 TCCAGGATAGTTCGCCGGT 60.381 57.895 1.90 0.00 0.00 5.28
212 213 1.364171 CTCCAGGATAGTTCGCCGG 59.636 63.158 0.00 0.00 0.00 6.13
213 214 1.364171 CCTCCAGGATAGTTCGCCG 59.636 63.158 0.00 0.00 37.39 6.46
214 215 1.069935 GCCTCCAGGATAGTTCGCC 59.930 63.158 0.00 0.00 37.39 5.54
215 216 0.466124 AAGCCTCCAGGATAGTTCGC 59.534 55.000 0.00 0.00 37.39 4.70
216 217 1.069358 GGAAGCCTCCAGGATAGTTCG 59.931 57.143 0.00 0.00 41.96 3.95
217 218 1.069358 CGGAAGCCTCCAGGATAGTTC 59.931 57.143 1.47 0.00 42.58 3.01
218 219 1.123928 CGGAAGCCTCCAGGATAGTT 58.876 55.000 1.47 0.00 42.58 2.24
219 220 2.827715 CGGAAGCCTCCAGGATAGT 58.172 57.895 1.47 0.00 42.58 2.12
233 234 0.400213 ACATCTTGTTCCCTGCGGAA 59.600 50.000 0.00 0.00 46.38 4.30
234 235 0.321564 CACATCTTGTTCCCTGCGGA 60.322 55.000 0.00 0.00 35.88 5.54
235 236 1.926511 GCACATCTTGTTCCCTGCGG 61.927 60.000 0.00 0.00 0.00 5.69
236 237 1.503542 GCACATCTTGTTCCCTGCG 59.496 57.895 0.00 0.00 0.00 5.18
237 238 0.955428 TCGCACATCTTGTTCCCTGC 60.955 55.000 0.00 0.00 0.00 4.85
238 239 1.081892 CTCGCACATCTTGTTCCCTG 58.918 55.000 0.00 0.00 0.00 4.45
239 240 0.036010 CCTCGCACATCTTGTTCCCT 60.036 55.000 0.00 0.00 0.00 4.20
240 241 0.036388 TCCTCGCACATCTTGTTCCC 60.036 55.000 0.00 0.00 0.00 3.97
241 242 1.066858 TCTCCTCGCACATCTTGTTCC 60.067 52.381 0.00 0.00 0.00 3.62
242 243 2.370281 TCTCCTCGCACATCTTGTTC 57.630 50.000 0.00 0.00 0.00 3.18
243 244 4.160439 TCTTATCTCCTCGCACATCTTGTT 59.840 41.667 0.00 0.00 0.00 2.83
244 245 3.701542 TCTTATCTCCTCGCACATCTTGT 59.298 43.478 0.00 0.00 0.00 3.16
245 246 4.313277 TCTTATCTCCTCGCACATCTTG 57.687 45.455 0.00 0.00 0.00 3.02
246 247 5.344743 TTTCTTATCTCCTCGCACATCTT 57.655 39.130 0.00 0.00 0.00 2.40
247 248 5.344743 TTTTCTTATCTCCTCGCACATCT 57.655 39.130 0.00 0.00 0.00 2.90
248 249 4.509600 CCTTTTCTTATCTCCTCGCACATC 59.490 45.833 0.00 0.00 0.00 3.06
249 250 4.162320 TCCTTTTCTTATCTCCTCGCACAT 59.838 41.667 0.00 0.00 0.00 3.21
250 251 3.513912 TCCTTTTCTTATCTCCTCGCACA 59.486 43.478 0.00 0.00 0.00 4.57
251 252 3.866327 GTCCTTTTCTTATCTCCTCGCAC 59.134 47.826 0.00 0.00 0.00 5.34
252 253 3.513912 TGTCCTTTTCTTATCTCCTCGCA 59.486 43.478 0.00 0.00 0.00 5.10
253 254 4.116238 CTGTCCTTTTCTTATCTCCTCGC 58.884 47.826 0.00 0.00 0.00 5.03
254 255 4.116238 GCTGTCCTTTTCTTATCTCCTCG 58.884 47.826 0.00 0.00 0.00 4.63
255 256 5.091261 TGCTGTCCTTTTCTTATCTCCTC 57.909 43.478 0.00 0.00 0.00 3.71
256 257 4.625083 GCTGCTGTCCTTTTCTTATCTCCT 60.625 45.833 0.00 0.00 0.00 3.69
257 258 3.625313 GCTGCTGTCCTTTTCTTATCTCC 59.375 47.826 0.00 0.00 0.00 3.71
258 259 3.308323 CGCTGCTGTCCTTTTCTTATCTC 59.692 47.826 0.00 0.00 0.00 2.75
259 260 3.055819 TCGCTGCTGTCCTTTTCTTATCT 60.056 43.478 0.00 0.00 0.00 1.98
260 261 3.262420 TCGCTGCTGTCCTTTTCTTATC 58.738 45.455 0.00 0.00 0.00 1.75
261 262 3.334583 TCGCTGCTGTCCTTTTCTTAT 57.665 42.857 0.00 0.00 0.00 1.73
262 263 2.831685 TCGCTGCTGTCCTTTTCTTA 57.168 45.000 0.00 0.00 0.00 2.10
263 264 1.967319 TTCGCTGCTGTCCTTTTCTT 58.033 45.000 0.00 0.00 0.00 2.52
264 265 1.808945 CATTCGCTGCTGTCCTTTTCT 59.191 47.619 0.00 0.00 0.00 2.52
265 266 1.806542 TCATTCGCTGCTGTCCTTTTC 59.193 47.619 0.00 0.00 0.00 2.29
266 267 1.896220 TCATTCGCTGCTGTCCTTTT 58.104 45.000 0.00 0.00 0.00 2.27
267 268 1.896220 TTCATTCGCTGCTGTCCTTT 58.104 45.000 0.00 0.00 0.00 3.11
268 269 1.741706 CATTCATTCGCTGCTGTCCTT 59.258 47.619 0.00 0.00 0.00 3.36
269 270 1.376543 CATTCATTCGCTGCTGTCCT 58.623 50.000 0.00 0.00 0.00 3.85
270 271 0.379669 CCATTCATTCGCTGCTGTCC 59.620 55.000 0.00 0.00 0.00 4.02
271 272 1.372582 TCCATTCATTCGCTGCTGTC 58.627 50.000 0.00 0.00 0.00 3.51
272 273 2.048444 ATCCATTCATTCGCTGCTGT 57.952 45.000 0.00 0.00 0.00 4.40
273 274 2.483106 CCTATCCATTCATTCGCTGCTG 59.517 50.000 0.00 0.00 0.00 4.41
274 275 2.551721 CCCTATCCATTCATTCGCTGCT 60.552 50.000 0.00 0.00 0.00 4.24
275 276 1.808945 CCCTATCCATTCATTCGCTGC 59.191 52.381 0.00 0.00 0.00 5.25
276 277 2.430465 CCCCTATCCATTCATTCGCTG 58.570 52.381 0.00 0.00 0.00 5.18
277 278 1.271597 GCCCCTATCCATTCATTCGCT 60.272 52.381 0.00 0.00 0.00 4.93
278 279 1.168714 GCCCCTATCCATTCATTCGC 58.831 55.000 0.00 0.00 0.00 4.70
279 280 1.001974 TCGCCCCTATCCATTCATTCG 59.998 52.381 0.00 0.00 0.00 3.34
280 281 2.039084 AGTCGCCCCTATCCATTCATTC 59.961 50.000 0.00 0.00 0.00 2.67
281 282 2.039084 GAGTCGCCCCTATCCATTCATT 59.961 50.000 0.00 0.00 0.00 2.57
282 283 1.625818 GAGTCGCCCCTATCCATTCAT 59.374 52.381 0.00 0.00 0.00 2.57
283 284 1.048601 GAGTCGCCCCTATCCATTCA 58.951 55.000 0.00 0.00 0.00 2.57
284 285 0.038159 CGAGTCGCCCCTATCCATTC 60.038 60.000 0.00 0.00 0.00 2.67
285 286 0.759436 ACGAGTCGCCCCTATCCATT 60.759 55.000 13.59 0.00 0.00 3.16
286 287 1.152525 ACGAGTCGCCCCTATCCAT 60.153 57.895 13.59 0.00 0.00 3.41
287 288 2.125326 CACGAGTCGCCCCTATCCA 61.125 63.158 13.59 0.00 0.00 3.41
288 289 2.728817 CACGAGTCGCCCCTATCC 59.271 66.667 13.59 0.00 0.00 2.59
289 290 1.797211 CTCCACGAGTCGCCCCTATC 61.797 65.000 13.59 0.00 0.00 2.08
290 291 1.828660 CTCCACGAGTCGCCCCTAT 60.829 63.158 13.59 0.00 0.00 2.57
291 292 2.280404 ATCTCCACGAGTCGCCCCTA 62.280 60.000 13.59 0.00 0.00 3.53
292 293 2.280404 TATCTCCACGAGTCGCCCCT 62.280 60.000 13.59 0.00 0.00 4.79
293 294 1.389609 TTATCTCCACGAGTCGCCCC 61.390 60.000 13.59 0.00 0.00 5.80
294 295 0.030908 CTTATCTCCACGAGTCGCCC 59.969 60.000 13.59 0.00 0.00 6.13
295 296 1.022735 TCTTATCTCCACGAGTCGCC 58.977 55.000 13.59 0.00 0.00 5.54
296 297 2.355132 TCTTCTTATCTCCACGAGTCGC 59.645 50.000 13.59 0.00 0.00 5.19
297 298 4.617808 TTCTTCTTATCTCCACGAGTCG 57.382 45.455 11.85 11.85 0.00 4.18
298 299 7.266922 AGTATTCTTCTTATCTCCACGAGTC 57.733 40.000 0.00 0.00 0.00 3.36
299 300 7.648039 AAGTATTCTTCTTATCTCCACGAGT 57.352 36.000 0.00 0.00 0.00 4.18
300 301 9.672086 CTTAAGTATTCTTCTTATCTCCACGAG 57.328 37.037 0.00 0.00 35.36 4.18
301 302 8.136165 GCTTAAGTATTCTTCTTATCTCCACGA 58.864 37.037 4.02 0.00 35.36 4.35
302 303 7.113684 CGCTTAAGTATTCTTCTTATCTCCACG 59.886 40.741 4.02 0.00 35.36 4.94
303 304 7.382759 CCGCTTAAGTATTCTTCTTATCTCCAC 59.617 40.741 4.02 0.00 35.36 4.02
304 305 7.069578 ACCGCTTAAGTATTCTTCTTATCTCCA 59.930 37.037 4.02 0.00 35.36 3.86
305 306 7.382759 CACCGCTTAAGTATTCTTCTTATCTCC 59.617 40.741 4.02 0.00 35.36 3.71
306 307 7.382759 CCACCGCTTAAGTATTCTTCTTATCTC 59.617 40.741 4.02 0.00 35.36 2.75
307 308 7.147707 ACCACCGCTTAAGTATTCTTCTTATCT 60.148 37.037 4.02 0.00 35.36 1.98
308 309 6.985059 ACCACCGCTTAAGTATTCTTCTTATC 59.015 38.462 4.02 0.00 35.36 1.75
309 310 6.761714 CACCACCGCTTAAGTATTCTTCTTAT 59.238 38.462 4.02 0.00 35.36 1.73
310 311 6.103997 CACCACCGCTTAAGTATTCTTCTTA 58.896 40.000 4.02 0.00 35.36 2.10
311 312 4.935808 CACCACCGCTTAAGTATTCTTCTT 59.064 41.667 4.02 0.00 35.36 2.52
312 313 4.504858 CACCACCGCTTAAGTATTCTTCT 58.495 43.478 4.02 0.00 35.36 2.85
313 314 3.621715 CCACCACCGCTTAAGTATTCTTC 59.378 47.826 4.02 0.00 35.36 2.87
314 315 3.606687 CCACCACCGCTTAAGTATTCTT 58.393 45.455 4.02 0.00 37.65 2.52
315 316 2.679930 GCCACCACCGCTTAAGTATTCT 60.680 50.000 4.02 0.00 0.00 2.40
316 317 1.669265 GCCACCACCGCTTAAGTATTC 59.331 52.381 4.02 0.00 0.00 1.75
317 318 1.746470 GCCACCACCGCTTAAGTATT 58.254 50.000 4.02 0.00 0.00 1.89
318 319 0.461339 CGCCACCACCGCTTAAGTAT 60.461 55.000 4.02 0.00 0.00 2.12
319 320 1.079681 CGCCACCACCGCTTAAGTA 60.080 57.895 4.02 0.00 0.00 2.24
320 321 2.358247 CGCCACCACCGCTTAAGT 60.358 61.111 4.02 0.00 0.00 2.24
332 333 4.752879 TTAGAGCCGGTGCGCCAC 62.753 66.667 18.18 7.73 44.33 5.01
333 334 4.010224 TTTAGAGCCGGTGCGCCA 62.010 61.111 18.18 0.00 44.33 5.69
334 335 3.497031 GTTTAGAGCCGGTGCGCC 61.497 66.667 6.11 6.11 44.33 6.53
335 336 3.849953 CGTTTAGAGCCGGTGCGC 61.850 66.667 1.90 0.00 44.33 6.09
336 337 1.562575 AAACGTTTAGAGCCGGTGCG 61.563 55.000 12.83 0.10 44.33 5.34
337 338 1.127397 GTAAACGTTTAGAGCCGGTGC 59.873 52.381 20.66 2.67 37.95 5.01
338 339 1.728425 GGTAAACGTTTAGAGCCGGTG 59.272 52.381 20.66 0.00 0.00 4.94
339 340 1.620323 AGGTAAACGTTTAGAGCCGGT 59.380 47.619 20.66 2.14 0.00 5.28
340 341 1.997606 CAGGTAAACGTTTAGAGCCGG 59.002 52.381 20.66 14.72 0.00 6.13
341 342 1.392510 GCAGGTAAACGTTTAGAGCCG 59.607 52.381 20.66 14.38 0.00 5.52
342 343 2.696506 AGCAGGTAAACGTTTAGAGCC 58.303 47.619 20.66 17.47 0.00 4.70
343 344 5.851047 TTAAGCAGGTAAACGTTTAGAGC 57.149 39.130 20.66 21.50 0.00 4.09
344 345 7.749126 CCAAATTAAGCAGGTAAACGTTTAGAG 59.251 37.037 20.66 13.88 0.00 2.43
345 346 7.308710 CCCAAATTAAGCAGGTAAACGTTTAGA 60.309 37.037 20.66 0.00 0.00 2.10
346 347 6.804783 CCCAAATTAAGCAGGTAAACGTTTAG 59.195 38.462 20.66 10.72 0.00 1.85
347 348 6.294620 CCCCAAATTAAGCAGGTAAACGTTTA 60.295 38.462 16.59 16.59 0.00 2.01
348 349 5.510009 CCCCAAATTAAGCAGGTAAACGTTT 60.510 40.000 18.90 18.90 0.00 3.60
349 350 4.021807 CCCCAAATTAAGCAGGTAAACGTT 60.022 41.667 0.00 0.00 0.00 3.99
350 351 3.508402 CCCCAAATTAAGCAGGTAAACGT 59.492 43.478 0.00 0.00 0.00 3.99
351 352 3.508402 ACCCCAAATTAAGCAGGTAAACG 59.492 43.478 0.00 0.00 0.00 3.60
352 353 4.282449 ACACCCCAAATTAAGCAGGTAAAC 59.718 41.667 0.00 0.00 0.00 2.01
353 354 4.282195 CACACCCCAAATTAAGCAGGTAAA 59.718 41.667 0.00 0.00 0.00 2.01
354 355 3.829601 CACACCCCAAATTAAGCAGGTAA 59.170 43.478 0.00 0.00 0.00 2.85
355 356 3.181427 ACACACCCCAAATTAAGCAGGTA 60.181 43.478 0.00 0.00 0.00 3.08
356 357 2.247358 CACACCCCAAATTAAGCAGGT 58.753 47.619 0.00 0.00 0.00 4.00
357 358 2.029110 CACACACCCCAAATTAAGCAGG 60.029 50.000 0.00 0.00 0.00 4.85
358 359 2.627699 ACACACACCCCAAATTAAGCAG 59.372 45.455 0.00 0.00 0.00 4.24
359 360 2.363680 CACACACACCCCAAATTAAGCA 59.636 45.455 0.00 0.00 0.00 3.91
360 361 2.866065 GCACACACACCCCAAATTAAGC 60.866 50.000 0.00 0.00 0.00 3.09
361 362 2.288763 GGCACACACACCCCAAATTAAG 60.289 50.000 0.00 0.00 0.00 1.85
362 363 1.689273 GGCACACACACCCCAAATTAA 59.311 47.619 0.00 0.00 0.00 1.40
363 364 1.333177 GGCACACACACCCCAAATTA 58.667 50.000 0.00 0.00 0.00 1.40
364 365 1.406860 GGGCACACACACCCCAAATT 61.407 55.000 0.00 0.00 40.56 1.82
365 366 1.836604 GGGCACACACACCCCAAAT 60.837 57.895 0.00 0.00 40.56 2.32
366 367 2.443016 GGGCACACACACCCCAAA 60.443 61.111 0.00 0.00 40.56 3.28
367 368 3.744155 TGGGCACACACACCCCAA 61.744 61.111 0.00 0.00 45.48 4.12
368 369 4.202574 CTGGGCACACACACCCCA 62.203 66.667 0.00 0.00 46.43 4.96
369 370 4.974721 CCTGGGCACACACACCCC 62.975 72.222 0.00 0.00 46.43 4.95
371 372 2.594592 GTCCTGGGCACACACACC 60.595 66.667 0.00 0.00 0.00 4.16
372 373 2.594592 GGTCCTGGGCACACACAC 60.595 66.667 0.00 0.00 0.00 3.82
373 374 4.248842 CGGTCCTGGGCACACACA 62.249 66.667 0.00 0.00 0.00 3.72
374 375 3.767630 AACGGTCCTGGGCACACAC 62.768 63.158 0.00 0.00 0.00 3.82
375 376 3.469863 GAACGGTCCTGGGCACACA 62.470 63.158 0.00 0.00 0.00 3.72
376 377 2.668550 GAACGGTCCTGGGCACAC 60.669 66.667 0.00 0.00 0.00 3.82
377 378 4.308458 CGAACGGTCCTGGGCACA 62.308 66.667 0.00 0.00 0.00 4.57
381 382 4.760047 CTGGCGAACGGTCCTGGG 62.760 72.222 0.00 0.00 0.00 4.45
386 387 3.723348 GTTGGCTGGCGAACGGTC 61.723 66.667 4.87 0.00 0.00 4.79
390 391 3.284449 AACGGTTGGCTGGCGAAC 61.284 61.111 11.08 11.08 34.58 3.95
391 392 3.283684 CAACGGTTGGCTGGCGAA 61.284 61.111 13.03 0.00 0.00 4.70
394 395 3.605664 AAGCAACGGTTGGCTGGC 61.606 61.111 21.37 7.45 40.93 4.85
395 396 2.336088 CAAGCAACGGTTGGCTGG 59.664 61.111 21.37 12.70 40.93 4.85
396 397 1.514678 TAGCAAGCAACGGTTGGCTG 61.515 55.000 24.16 15.72 40.77 4.85
397 398 1.228124 TAGCAAGCAACGGTTGGCT 60.228 52.632 21.37 21.25 40.77 4.75
398 399 1.210155 CTAGCAAGCAACGGTTGGC 59.790 57.895 21.37 15.91 40.77 4.52
399 400 0.517316 GACTAGCAAGCAACGGTTGG 59.483 55.000 21.37 7.07 40.77 3.77
400 401 0.163788 CGACTAGCAAGCAACGGTTG 59.836 55.000 16.35 16.35 42.93 3.77
401 402 2.528797 CGACTAGCAAGCAACGGTT 58.471 52.632 0.00 0.00 0.00 4.44
402 403 4.261888 CGACTAGCAAGCAACGGT 57.738 55.556 0.00 0.00 0.00 4.83
412 413 3.058432 TGGACAATATAGACGCGACTAGC 60.058 47.826 21.76 8.14 43.95 3.42
413 414 4.744136 TGGACAATATAGACGCGACTAG 57.256 45.455 21.76 11.68 0.00 2.57
414 415 5.001874 AGATGGACAATATAGACGCGACTA 58.998 41.667 19.88 19.88 0.00 2.59
415 416 3.821600 AGATGGACAATATAGACGCGACT 59.178 43.478 15.93 16.24 0.00 4.18
416 417 4.159857 GAGATGGACAATATAGACGCGAC 58.840 47.826 15.93 6.86 0.00 5.19
417 418 3.818773 TGAGATGGACAATATAGACGCGA 59.181 43.478 15.93 0.00 0.00 5.87
418 419 4.160736 TGAGATGGACAATATAGACGCG 57.839 45.455 3.53 3.53 0.00 6.01
419 420 4.383052 CGTTGAGATGGACAATATAGACGC 59.617 45.833 0.00 0.00 0.00 5.19
420 421 5.758924 TCGTTGAGATGGACAATATAGACG 58.241 41.667 0.00 0.00 0.00 4.18
421 422 6.971602 TCTCGTTGAGATGGACAATATAGAC 58.028 40.000 0.00 0.00 33.35 2.59
422 423 7.767250 ATCTCGTTGAGATGGACAATATAGA 57.233 36.000 8.44 0.00 46.21 1.98
496 505 4.030216 GAGAGGAAGAGGAAGACCATCTT 58.970 47.826 0.00 0.00 39.87 2.40
948 1032 1.807226 CGGGCATACTGACGAGTCA 59.193 57.895 5.76 5.76 38.06 3.41
964 1048 2.436115 GGAAGAAACGGGAGGCGG 60.436 66.667 0.00 0.00 0.00 6.13
1255 1364 1.849829 GCGAGAAACAAAAACAACCGG 59.150 47.619 0.00 0.00 0.00 5.28
1256 1365 2.529894 CAGCGAGAAACAAAAACAACCG 59.470 45.455 0.00 0.00 0.00 4.44
1258 1367 2.920490 TGCAGCGAGAAACAAAAACAAC 59.080 40.909 0.00 0.00 0.00 3.32
1259 1368 2.920490 GTGCAGCGAGAAACAAAAACAA 59.080 40.909 0.00 0.00 0.00 2.83
1264 1373 2.289547 GGTTAGTGCAGCGAGAAACAAA 59.710 45.455 0.00 0.00 0.00 2.83
1309 1427 3.181501 GCATAATTAAAGCTGGACACGCA 60.182 43.478 6.13 0.00 0.00 5.24
1438 1556 4.123506 CAAAACCCATGTGTGTTAAACCC 58.876 43.478 0.00 0.00 0.00 4.11
1459 1577 0.609957 TCCGAAGAAGCGACTACCCA 60.610 55.000 0.00 0.00 0.00 4.51
1680 1836 1.073964 CAGAAGCACCACATCACTCG 58.926 55.000 0.00 0.00 0.00 4.18
1762 1937 7.142021 AGCTACTTGATCACACTTGATATACG 58.858 38.462 0.00 0.00 42.95 3.06
1972 2199 8.905850 GGGATAAAAACGGGACATAGATAAAAA 58.094 33.333 0.00 0.00 0.00 1.94
1973 2200 7.227116 CGGGATAAAAACGGGACATAGATAAAA 59.773 37.037 0.00 0.00 0.00 1.52
1974 2201 6.707161 CGGGATAAAAACGGGACATAGATAAA 59.293 38.462 0.00 0.00 0.00 1.40
1975 2202 6.041865 TCGGGATAAAAACGGGACATAGATAA 59.958 38.462 0.00 0.00 0.00 1.75
1976 2203 5.539574 TCGGGATAAAAACGGGACATAGATA 59.460 40.000 0.00 0.00 0.00 1.98
1977 2204 4.345837 TCGGGATAAAAACGGGACATAGAT 59.654 41.667 0.00 0.00 0.00 1.98
1978 2205 3.705579 TCGGGATAAAAACGGGACATAGA 59.294 43.478 0.00 0.00 0.00 1.98
1979 2206 4.056050 CTCGGGATAAAAACGGGACATAG 58.944 47.826 0.00 0.00 0.00 2.23
1980 2207 3.705579 TCTCGGGATAAAAACGGGACATA 59.294 43.478 0.00 0.00 31.28 2.29
1981 2208 2.502538 TCTCGGGATAAAAACGGGACAT 59.497 45.455 0.00 0.00 31.28 3.06
1982 2209 1.901159 TCTCGGGATAAAAACGGGACA 59.099 47.619 0.00 0.00 31.28 4.02
1983 2210 2.167075 TCTCTCGGGATAAAAACGGGAC 59.833 50.000 0.00 0.00 33.03 4.46
1984 2211 2.459644 TCTCTCGGGATAAAAACGGGA 58.540 47.619 0.00 0.00 35.57 5.14
1985 2212 2.973694 TCTCTCGGGATAAAAACGGG 57.026 50.000 0.00 0.00 0.00 5.28
1986 2213 6.366332 CAGATAATCTCTCGGGATAAAAACGG 59.634 42.308 0.00 0.00 29.16 4.44
1987 2214 6.366332 CCAGATAATCTCTCGGGATAAAAACG 59.634 42.308 0.00 0.00 30.44 3.60
1988 2215 7.171678 CACCAGATAATCTCTCGGGATAAAAAC 59.828 40.741 0.00 0.00 32.92 2.43
1989 2216 7.217200 CACCAGATAATCTCTCGGGATAAAAA 58.783 38.462 0.00 0.00 32.92 1.94
2138 2393 4.695455 GCTCCAAGCACTACTAACAATCAA 59.305 41.667 0.00 0.00 41.89 2.57
2193 3314 7.758528 ACACTTCAGATAAACTTCGTATGGTAC 59.241 37.037 0.00 0.00 0.00 3.34
2195 3316 6.698380 ACACTTCAGATAAACTTCGTATGGT 58.302 36.000 0.00 0.00 0.00 3.55
2245 3367 9.314321 CTTCTGTACAAGAAATGGATATTACGT 57.686 33.333 0.00 0.00 44.38 3.57
2246 3368 9.529325 TCTTCTGTACAAGAAATGGATATTACG 57.471 33.333 0.00 0.00 44.38 3.18
2298 4109 1.951209 TCTACCCATGAGGCAACAGA 58.049 50.000 0.00 0.00 40.58 3.41
2604 8762 4.141620 ACATCTAAACCATAGGAGGCACAG 60.142 45.833 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.