Multiple sequence alignment - TraesCS3D01G406200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G406200 chr3D 100.000 2945 0 0 1 2945 520290645 520293589 0.000000e+00 5439.0
1 TraesCS3D01G406200 chr3D 92.605 933 54 5 964 1887 519948034 519947108 0.000000e+00 1327.0
2 TraesCS3D01G406200 chr3D 89.594 788 77 4 1914 2700 519946834 519946051 0.000000e+00 996.0
3 TraesCS3D01G406200 chr3D 90.468 598 48 7 1 594 567244189 567243597 0.000000e+00 780.0
4 TraesCS3D01G406200 chr3D 83.588 786 97 14 948 1722 519710344 519709580 0.000000e+00 708.0
5 TraesCS3D01G406200 chr3D 85.106 564 54 15 1244 1788 519876539 519875987 1.540000e-152 549.0
6 TraesCS3D01G406200 chr3D 78.434 779 116 23 978 1722 519714059 519713299 7.440000e-126 460.0
7 TraesCS3D01G406200 chr3D 85.284 299 26 9 596 892 569567035 569567317 2.870000e-75 292.0
8 TraesCS3D01G406200 chr3D 96.732 153 5 0 2793 2945 519883278 519883126 3.770000e-64 255.0
9 TraesCS3D01G406200 chr3D 80.000 220 33 9 674 892 2597935 2597726 5.080000e-33 152.0
10 TraesCS3D01G406200 chr3D 81.410 156 24 4 733 887 389214619 389214468 3.990000e-24 122.0
11 TraesCS3D01G406200 chr3D 91.071 56 4 1 1830 1885 305882875 305882929 1.130000e-09 75.0
12 TraesCS3D01G406200 chr3D 90.196 51 5 0 909 959 519876817 519876767 1.890000e-07 67.6
13 TraesCS3D01G406200 chr5A 94.622 595 30 2 1 594 685532631 685533224 0.000000e+00 920.0
14 TraesCS3D01G406200 chr5A 87.603 121 9 3 1890 2005 534895124 534895005 5.120000e-28 135.0
15 TraesCS3D01G406200 chr5A 94.118 51 2 1 1830 1880 69358458 69358507 3.150000e-10 76.8
16 TraesCS3D01G406200 chr5D 94.444 594 33 0 1 594 61814814 61814221 0.000000e+00 915.0
17 TraesCS3D01G406200 chr5D 90.667 600 48 7 1 594 74135738 74136335 0.000000e+00 791.0
18 TraesCS3D01G406200 chr5D 82.022 267 32 13 634 892 350596878 350597136 2.300000e-51 213.0
19 TraesCS3D01G406200 chr5D 90.000 120 7 2 1890 2005 397657930 397657812 1.830000e-32 150.0
20 TraesCS3D01G406200 chr5D 92.982 57 3 1 1830 1886 495896616 495896561 6.760000e-12 82.4
21 TraesCS3D01G406200 chr3A 84.641 918 94 22 936 1832 655507394 655506503 0.000000e+00 870.0
22 TraesCS3D01G406200 chr3A 78.965 889 126 33 953 1835 655232546 655231713 1.540000e-152 549.0
23 TraesCS3D01G406200 chr3A 78.394 523 60 22 1243 1726 655505309 655504801 1.030000e-74 291.0
24 TraesCS3D01G406200 chr3A 87.719 57 6 1 1830 1886 155011650 155011705 6.810000e-07 65.8
25 TraesCS3D01G406200 chr7A 93.110 566 34 4 1 563 48070460 48071023 0.000000e+00 824.0
26 TraesCS3D01G406200 chr7A 90.090 111 7 1 1890 1996 518551914 518552024 1.100000e-29 141.0
27 TraesCS3D01G406200 chr7A 89.655 58 5 1 1830 1887 245605451 245605507 4.070000e-09 73.1
28 TraesCS3D01G406200 chr7A 79.348 92 13 4 2170 2259 651644286 651644199 3.170000e-05 60.2
29 TraesCS3D01G406200 chr6A 91.639 598 43 6 1 594 149386620 149387214 0.000000e+00 821.0
30 TraesCS3D01G406200 chr1D 91.181 601 43 10 1 594 54899993 54900590 0.000000e+00 808.0
31 TraesCS3D01G406200 chr1D 84.767 407 46 8 1277 1667 407823576 407823982 7.650000e-106 394.0
32 TraesCS3D01G406200 chr1D 77.827 681 115 17 1017 1667 407807896 407808570 3.560000e-104 388.0
33 TraesCS3D01G406200 chr1D 95.122 41 2 0 1835 1875 26524078 26524038 6.810000e-07 65.8
34 TraesCS3D01G406200 chr6D 91.152 599 44 7 1 594 350238652 350238058 0.000000e+00 804.0
35 TraesCS3D01G406200 chr6D 81.437 167 27 4 727 892 4946397 4946560 1.840000e-27 134.0
36 TraesCS3D01G406200 chr6D 87.500 120 9 6 1890 2005 321771170 321771053 1.840000e-27 134.0
37 TraesCS3D01G406200 chr7D 90.818 599 45 8 1 594 51796893 51796300 0.000000e+00 793.0
38 TraesCS3D01G406200 chr3B 80.946 761 97 23 909 1661 684462337 684461617 2.560000e-155 558.0
39 TraesCS3D01G406200 chr3B 79.692 650 116 12 1017 1661 684268912 684268274 3.460000e-124 455.0
40 TraesCS3D01G406200 chr3B 93.266 297 16 2 596 892 422554011 422553719 4.510000e-118 435.0
41 TraesCS3D01G406200 chr3B 83.803 426 55 8 1243 1661 684320935 684320517 2.750000e-105 392.0
42 TraesCS3D01G406200 chr3B 78.818 609 102 16 978 1573 684328250 684327656 4.600000e-103 385.0
43 TraesCS3D01G406200 chr3B 83.737 289 25 8 1564 1832 684322246 684321960 1.350000e-63 254.0
44 TraesCS3D01G406200 chr3B 89.189 111 8 1 1890 1996 243766683 243766793 5.120000e-28 135.0
45 TraesCS3D01G406200 chr3B 95.238 63 3 0 1244 1306 684460083 684460021 1.870000e-17 100.0
46 TraesCS3D01G406200 chr3B 94.444 36 2 0 2222 2257 125531359 125531394 4.100000e-04 56.5
47 TraesCS3D01G406200 chr1B 83.824 408 48 10 1277 1667 548391299 548391705 3.580000e-99 372.0
48 TraesCS3D01G406200 chr1B 90.000 120 7 2 1890 2005 65555747 65555629 1.830000e-32 150.0
49 TraesCS3D01G406200 chr1B 94.595 37 2 0 2214 2250 681046474 681046510 1.140000e-04 58.4
50 TraesCS3D01G406200 chr1B 90.476 42 4 0 2216 2257 427534172 427534213 4.100000e-04 56.5
51 TraesCS3D01G406200 chr1A 84.282 369 40 10 1354 1706 503325725 503326091 7.810000e-91 344.0
52 TraesCS3D01G406200 chr1A 87.500 120 10 2 1890 2005 45789138 45789256 1.840000e-27 134.0
53 TraesCS3D01G406200 chr1A 94.595 37 2 0 2214 2250 3018838 3018874 1.140000e-04 58.4
54 TraesCS3D01G406200 chr2A 79.927 274 36 14 630 893 699576344 699576608 1.800000e-42 183.0
55 TraesCS3D01G406200 chr2A 90.000 110 7 1 1890 1995 477127620 477127511 3.960000e-29 139.0
56 TraesCS3D01G406200 chr4B 79.051 253 39 10 640 883 620172150 620172397 8.450000e-36 161.0
57 TraesCS3D01G406200 chr5B 83.871 124 14 6 770 892 399279445 399279327 2.400000e-21 113.0
58 TraesCS3D01G406200 chr6B 90.909 44 4 0 2214 2257 687964326 687964369 3.170000e-05 60.2
59 TraesCS3D01G406200 chr4A 89.362 47 5 0 2214 2260 651215987 651215941 3.170000e-05 60.2
60 TraesCS3D01G406200 chrUn 91.892 37 3 0 2214 2250 400539979 400540015 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G406200 chr3D 520290645 520293589 2944 False 5439.0 5439 100.0000 1 2945 1 chr3D.!!$F2 2944
1 TraesCS3D01G406200 chr3D 519946051 519948034 1983 True 1161.5 1327 91.0995 964 2700 2 chr3D.!!$R7 1736
2 TraesCS3D01G406200 chr3D 567243597 567244189 592 True 780.0 780 90.4680 1 594 1 chr3D.!!$R4 593
3 TraesCS3D01G406200 chr3D 519709580 519714059 4479 True 584.0 708 81.0110 948 1722 2 chr3D.!!$R5 774
4 TraesCS3D01G406200 chr3D 519875987 519876817 830 True 308.3 549 87.6510 909 1788 2 chr3D.!!$R6 879
5 TraesCS3D01G406200 chr5A 685532631 685533224 593 False 920.0 920 94.6220 1 594 1 chr5A.!!$F2 593
6 TraesCS3D01G406200 chr5D 61814221 61814814 593 True 915.0 915 94.4440 1 594 1 chr5D.!!$R1 593
7 TraesCS3D01G406200 chr5D 74135738 74136335 597 False 791.0 791 90.6670 1 594 1 chr5D.!!$F1 593
8 TraesCS3D01G406200 chr3A 655504801 655507394 2593 True 580.5 870 81.5175 936 1832 2 chr3A.!!$R2 896
9 TraesCS3D01G406200 chr3A 655231713 655232546 833 True 549.0 549 78.9650 953 1835 1 chr3A.!!$R1 882
10 TraesCS3D01G406200 chr7A 48070460 48071023 563 False 824.0 824 93.1100 1 563 1 chr7A.!!$F1 562
11 TraesCS3D01G406200 chr6A 149386620 149387214 594 False 821.0 821 91.6390 1 594 1 chr6A.!!$F1 593
12 TraesCS3D01G406200 chr1D 54899993 54900590 597 False 808.0 808 91.1810 1 594 1 chr1D.!!$F1 593
13 TraesCS3D01G406200 chr1D 407807896 407808570 674 False 388.0 388 77.8270 1017 1667 1 chr1D.!!$F2 650
14 TraesCS3D01G406200 chr6D 350238058 350238652 594 True 804.0 804 91.1520 1 594 1 chr6D.!!$R2 593
15 TraesCS3D01G406200 chr7D 51796300 51796893 593 True 793.0 793 90.8180 1 594 1 chr7D.!!$R1 593
16 TraesCS3D01G406200 chr3B 684268274 684268912 638 True 455.0 455 79.6920 1017 1661 1 chr3B.!!$R2 644
17 TraesCS3D01G406200 chr3B 684327656 684328250 594 True 385.0 385 78.8180 978 1573 1 chr3B.!!$R3 595
18 TraesCS3D01G406200 chr3B 684460021 684462337 2316 True 329.0 558 88.0920 909 1661 2 chr3B.!!$R5 752
19 TraesCS3D01G406200 chr3B 684320517 684322246 1729 True 323.0 392 83.7700 1243 1832 2 chr3B.!!$R4 589


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
601 609 0.180406 CCAAAGGATCTACCCACCCG 59.82 60.0 0.0 0.0 40.05 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2538 8233 0.248215 GCACGGAGAAAATGGCATCG 60.248 55.0 0.0 0.9 0.0 3.84 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 2.110899 TGGATAGGCCCAAAAGGAACAA 59.889 45.455 0.00 0.00 38.24 2.83
249 250 2.844348 TCAAGGGGGAGAATGTTAGGTC 59.156 50.000 0.00 0.00 0.00 3.85
600 608 1.591768 TCCAAAGGATCTACCCACCC 58.408 55.000 0.00 0.00 40.05 4.61
601 609 0.180406 CCAAAGGATCTACCCACCCG 59.820 60.000 0.00 0.00 40.05 5.28
602 610 0.463833 CAAAGGATCTACCCACCCGC 60.464 60.000 0.00 0.00 40.05 6.13
603 611 1.968050 AAAGGATCTACCCACCCGCG 61.968 60.000 0.00 0.00 40.05 6.46
604 612 4.603946 GGATCTACCCACCCGCGC 62.604 72.222 0.00 0.00 0.00 6.86
605 613 4.944372 GATCTACCCACCCGCGCG 62.944 72.222 25.67 25.67 0.00 6.86
623 631 4.193334 CGAGATCGTGCCGGCAGA 62.193 66.667 33.73 27.95 34.11 4.26
624 632 2.279120 GAGATCGTGCCGGCAGAG 60.279 66.667 33.73 26.81 0.00 3.35
625 633 2.755876 AGATCGTGCCGGCAGAGA 60.756 61.111 33.73 31.11 0.00 3.10
626 634 2.279120 GATCGTGCCGGCAGAGAG 60.279 66.667 33.73 21.35 0.00 3.20
628 636 2.945398 GATCGTGCCGGCAGAGAGAC 62.945 65.000 33.73 23.46 0.00 3.36
629 637 4.803426 CGTGCCGGCAGAGAGACC 62.803 72.222 33.73 15.73 0.00 3.85
632 640 4.459089 GCCGGCAGAGAGACCACC 62.459 72.222 24.80 0.00 0.00 4.61
633 641 4.135153 CCGGCAGAGAGACCACCG 62.135 72.222 0.00 0.00 43.44 4.94
636 644 2.716017 GGCAGAGAGACCACCGGAG 61.716 68.421 9.46 0.00 0.00 4.63
637 645 1.679305 GCAGAGAGACCACCGGAGA 60.679 63.158 9.46 0.00 0.00 3.71
638 646 1.662438 GCAGAGAGACCACCGGAGAG 61.662 65.000 9.46 0.00 0.00 3.20
640 648 2.363147 AGAGACCACCGGAGAGGC 60.363 66.667 9.46 0.00 46.52 4.70
641 649 2.363147 GAGACCACCGGAGAGGCT 60.363 66.667 9.46 2.53 46.52 4.58
643 651 2.997897 GACCACCGGAGAGGCTGT 60.998 66.667 9.46 0.00 46.52 4.40
644 652 2.997897 ACCACCGGAGAGGCTGTC 60.998 66.667 9.46 2.44 46.52 3.51
645 653 4.135153 CCACCGGAGAGGCTGTCG 62.135 72.222 9.46 1.38 46.52 4.35
646 654 4.803426 CACCGGAGAGGCTGTCGC 62.803 72.222 9.46 0.00 46.52 5.19
692 700 3.496160 CAGGGGCTGGATCTGGGG 61.496 72.222 0.00 0.00 0.00 4.96
693 701 4.851252 AGGGGCTGGATCTGGGGG 62.851 72.222 0.00 0.00 0.00 5.40
716 724 4.410400 GCGGAGGGGGAAGGTGTG 62.410 72.222 0.00 0.00 0.00 3.82
717 725 3.717294 CGGAGGGGGAAGGTGTGG 61.717 72.222 0.00 0.00 0.00 4.17
720 728 3.882670 AGGGGGAAGGTGTGGGGA 61.883 66.667 0.00 0.00 0.00 4.81
721 729 3.339093 GGGGGAAGGTGTGGGGAG 61.339 72.222 0.00 0.00 0.00 4.30
723 731 1.619669 GGGGAAGGTGTGGGGAGAT 60.620 63.158 0.00 0.00 0.00 2.75
724 732 1.609783 GGGAAGGTGTGGGGAGATG 59.390 63.158 0.00 0.00 0.00 2.90
725 733 1.609783 GGAAGGTGTGGGGAGATGG 59.390 63.158 0.00 0.00 0.00 3.51
726 734 1.609783 GAAGGTGTGGGGAGATGGG 59.390 63.158 0.00 0.00 0.00 4.00
727 735 1.926426 GAAGGTGTGGGGAGATGGGG 61.926 65.000 0.00 0.00 0.00 4.96
728 736 2.286121 GGTGTGGGGAGATGGGGA 60.286 66.667 0.00 0.00 0.00 4.81
729 737 1.928567 GGTGTGGGGAGATGGGGAA 60.929 63.158 0.00 0.00 0.00 3.97
730 738 1.609783 GTGTGGGGAGATGGGGAAG 59.390 63.158 0.00 0.00 0.00 3.46
731 739 0.914417 GTGTGGGGAGATGGGGAAGA 60.914 60.000 0.00 0.00 0.00 2.87
733 741 0.326618 GTGGGGAGATGGGGAAGAGA 60.327 60.000 0.00 0.00 0.00 3.10
735 743 1.203557 TGGGGAGATGGGGAAGAGAAA 60.204 52.381 0.00 0.00 0.00 2.52
736 744 1.923148 GGGGAGATGGGGAAGAGAAAA 59.077 52.381 0.00 0.00 0.00 2.29
737 745 2.311841 GGGGAGATGGGGAAGAGAAAAA 59.688 50.000 0.00 0.00 0.00 1.94
738 746 3.357203 GGGAGATGGGGAAGAGAAAAAC 58.643 50.000 0.00 0.00 0.00 2.43
740 748 4.013050 GGAGATGGGGAAGAGAAAAACAG 58.987 47.826 0.00 0.00 0.00 3.16
741 749 3.425659 AGATGGGGAAGAGAAAAACAGC 58.574 45.455 0.00 0.00 0.00 4.40
742 750 1.995376 TGGGGAAGAGAAAAACAGCC 58.005 50.000 0.00 0.00 0.00 4.85
743 751 1.499007 TGGGGAAGAGAAAAACAGCCT 59.501 47.619 0.00 0.00 0.00 4.58
744 752 2.163509 GGGGAAGAGAAAAACAGCCTC 58.836 52.381 0.00 0.00 0.00 4.70
745 753 1.807142 GGGAAGAGAAAAACAGCCTCG 59.193 52.381 0.00 0.00 32.52 4.63
746 754 1.197949 GGAAGAGAAAAACAGCCTCGC 59.802 52.381 0.00 0.00 32.52 5.03
747 755 1.197949 GAAGAGAAAAACAGCCTCGCC 59.802 52.381 0.00 0.00 32.52 5.54
748 756 0.951040 AGAGAAAAACAGCCTCGCCG 60.951 55.000 0.00 0.00 32.52 6.46
749 757 2.126850 GAAAAACAGCCTCGCCGC 60.127 61.111 0.00 0.00 0.00 6.53
750 758 3.610791 GAAAAACAGCCTCGCCGCC 62.611 63.158 0.00 0.00 0.00 6.13
861 869 3.787001 GGCCAGAGTTCCCCCGAG 61.787 72.222 0.00 0.00 0.00 4.63
862 870 3.003763 GCCAGAGTTCCCCCGAGT 61.004 66.667 0.00 0.00 0.00 4.18
864 872 2.711922 CCAGAGTTCCCCCGAGTCG 61.712 68.421 5.29 5.29 0.00 4.18
865 873 3.069318 AGAGTTCCCCCGAGTCGC 61.069 66.667 7.12 0.00 0.00 5.19
866 874 4.144703 GAGTTCCCCCGAGTCGCC 62.145 72.222 7.12 0.00 0.00 5.54
906 914 4.078516 GGGACGGGGGAGAACACG 62.079 72.222 0.00 0.00 0.00 4.49
907 915 4.078516 GGACGGGGGAGAACACGG 62.079 72.222 0.00 0.00 0.00 4.94
1012 1036 6.202954 CAGTTCTACGGTCAAATCAAGAGTTT 59.797 38.462 0.00 0.00 0.00 2.66
1132 1156 1.573829 TTTTCATCGACCAGGTGCGC 61.574 55.000 0.00 0.00 0.00 6.09
1160 1184 2.969238 GCATGGGCTCCATCGTCG 60.969 66.667 3.93 0.00 43.15 5.12
1161 1185 2.969238 CATGGGCTCCATCGTCGC 60.969 66.667 3.93 0.00 43.15 5.19
1167 1191 2.224885 GCTCCATCGTCGCGTTCTC 61.225 63.158 5.77 0.00 0.00 2.87
1180 1204 2.248487 GCGTTCTCGTTCGTACTCATT 58.752 47.619 0.00 0.00 39.49 2.57
1181 1205 3.419915 GCGTTCTCGTTCGTACTCATTA 58.580 45.455 0.00 0.00 39.49 1.90
1196 1220 4.104086 ACTCATTATCTGGGTCACCTTCA 58.896 43.478 0.00 0.00 30.59 3.02
1197 1221 4.723789 ACTCATTATCTGGGTCACCTTCAT 59.276 41.667 0.00 0.00 30.59 2.57
1198 1222 5.163258 ACTCATTATCTGGGTCACCTTCATC 60.163 44.000 0.00 0.00 30.59 2.92
1200 1224 0.179000 ATCTGGGTCACCTTCATCGC 59.821 55.000 0.00 0.00 37.76 4.58
1201 1225 1.450312 CTGGGTCACCTTCATCGCC 60.450 63.158 0.00 0.00 37.76 5.54
1202 1226 2.511600 GGGTCACCTTCATCGCCG 60.512 66.667 0.00 0.00 0.00 6.46
1203 1227 2.511600 GGTCACCTTCATCGCCGG 60.512 66.667 0.00 0.00 0.00 6.13
1204 1228 2.264794 GTCACCTTCATCGCCGGT 59.735 61.111 1.90 0.00 0.00 5.28
1206 1230 3.499737 CACCTTCATCGCCGGTGC 61.500 66.667 11.05 0.00 41.39 5.01
1228 1252 1.206072 CACGCTCTTGTGCTGCTTC 59.794 57.895 0.00 0.00 32.31 3.86
1229 1253 1.227645 ACGCTCTTGTGCTGCTTCA 60.228 52.632 0.00 0.00 0.00 3.02
1231 1255 1.578423 GCTCTTGTGCTGCTTCACC 59.422 57.895 0.00 0.00 36.17 4.02
1232 1256 1.864862 CTCTTGTGCTGCTTCACCG 59.135 57.895 0.00 0.00 36.17 4.94
1234 1258 0.880278 TCTTGTGCTGCTTCACCGTC 60.880 55.000 0.00 0.00 36.17 4.79
1235 1259 0.882042 CTTGTGCTGCTTCACCGTCT 60.882 55.000 0.00 0.00 36.17 4.18
1236 1260 0.880278 TTGTGCTGCTTCACCGTCTC 60.880 55.000 0.00 0.00 36.17 3.36
1238 1262 3.482783 GCTGCTTCACCGTCTCGC 61.483 66.667 0.00 0.00 0.00 5.03
1239 1263 2.259818 CTGCTTCACCGTCTCGCT 59.740 61.111 0.00 0.00 0.00 4.93
1240 1264 2.049156 TGCTTCACCGTCTCGCTG 60.049 61.111 0.00 0.00 0.00 5.18
1242 1266 2.811317 CTTCACCGTCTCGCTGCC 60.811 66.667 0.00 0.00 0.00 4.85
1314 1402 0.456995 CGACTTCTCTGCCTTCCGTC 60.457 60.000 0.00 0.00 0.00 4.79
1316 1404 1.153745 CTTCTCTGCCTTCCGTCCG 60.154 63.158 0.00 0.00 0.00 4.79
1322 1413 3.766691 GCCTTCCGTCCGGTGCTA 61.767 66.667 0.00 0.00 36.47 3.49
1537 5368 1.846124 GGTGGAGAAGGGGGACACA 60.846 63.158 0.00 0.00 33.91 3.72
1574 5405 1.151221 TGCCTGCACATGTTCCACT 59.849 52.632 0.00 0.00 0.00 4.00
1692 6124 5.994054 GCTGGTAATGAGAGATAATTGAGCA 59.006 40.000 0.00 0.00 0.00 4.26
1832 6296 5.394115 GGATATCACAACAATCCAAACCCAC 60.394 44.000 4.83 0.00 39.24 4.61
1842 6796 5.010617 ACAATCCAAACCCACACATTAAGTC 59.989 40.000 0.00 0.00 0.00 3.01
1880 6834 4.050852 AGTTGAGCAAAAGGAAGCAAAG 57.949 40.909 0.00 0.00 0.00 2.77
1897 7094 2.373540 AAGCTTACGGTATCGCACAA 57.626 45.000 0.00 0.00 40.63 3.33
1898 7095 1.636988 AGCTTACGGTATCGCACAAC 58.363 50.000 0.00 0.00 40.63 3.32
1899 7096 1.067425 AGCTTACGGTATCGCACAACA 60.067 47.619 0.00 0.00 40.63 3.33
1900 7097 1.931172 GCTTACGGTATCGCACAACAT 59.069 47.619 0.00 0.00 40.63 2.71
1905 7102 2.159099 ACGGTATCGCACAACATCTCAT 60.159 45.455 0.00 0.00 40.63 2.90
1912 7109 2.744166 CGCACAACATCTCATCCTCCAT 60.744 50.000 0.00 0.00 0.00 3.41
1977 7178 6.256321 GCGTTTGAAAATAATCTCAATGGCAT 59.744 34.615 0.00 0.00 33.63 4.40
1993 7194 0.387239 GCATTTGACCGAACACCTGC 60.387 55.000 0.00 0.00 0.00 4.85
2010 7211 1.216178 GCCAGGCGTCGGTACTAAA 59.784 57.895 0.00 0.00 0.00 1.85
2011 7212 0.390209 GCCAGGCGTCGGTACTAAAA 60.390 55.000 0.00 0.00 0.00 1.52
2068 7269 0.686441 TCCGTGGCCTGTGCTACTAT 60.686 55.000 3.32 0.00 45.94 2.12
2083 7284 1.454479 CTATTGTGGCCAGCCCCAG 60.454 63.158 5.11 0.00 35.05 4.45
2084 7285 2.916527 CTATTGTGGCCAGCCCCAGG 62.917 65.000 5.11 0.00 35.05 4.45
2099 7300 2.368329 AGGGGACATAGTGGGGGC 60.368 66.667 0.00 0.00 0.00 5.80
2146 7347 1.733758 CCACGCCGCAACTAACGTA 60.734 57.895 0.00 0.00 36.91 3.57
2218 7480 2.654749 TGCTTGCTATATCGCGCTAT 57.345 45.000 5.56 7.70 0.00 2.97
2286 7548 6.497259 TCACCCTATTATACTTGCTCTTAGGG 59.503 42.308 9.96 9.96 46.50 3.53
2326 7588 5.062183 GTGGAATTTGAAGCGAAAAATAGCC 59.938 40.000 0.00 0.00 0.00 3.93
2380 8075 4.020617 TGGAGGAAGCAGCGGTGG 62.021 66.667 17.54 0.00 0.00 4.61
2406 8101 3.930012 GATAGGCGGGGAAGCGCT 61.930 66.667 2.64 2.64 38.18 5.92
2443 8138 1.841302 AATGGAGAAGGTGCAGGCGA 61.841 55.000 0.00 0.00 0.00 5.54
2471 8166 1.440893 CGCCTGGAGGTCTCTCATG 59.559 63.158 0.00 0.00 41.69 3.07
2478 8173 1.606668 GGAGGTCTCTCATGTCTAGCG 59.393 57.143 0.00 0.00 41.69 4.26
2484 8179 0.175760 TCTCATGTCTAGCGGTTGGC 59.824 55.000 0.00 0.00 44.05 4.52
2501 8196 4.059459 CGAAGTTGCGCGCGAGTT 62.059 61.111 35.43 35.43 0.00 3.01
2536 8231 1.511887 CGCAGCAAATACACCACGC 60.512 57.895 0.00 0.00 0.00 5.34
2537 8232 1.578926 GCAGCAAATACACCACGCA 59.421 52.632 0.00 0.00 0.00 5.24
2538 8233 0.729140 GCAGCAAATACACCACGCAC 60.729 55.000 0.00 0.00 0.00 5.34
2539 8234 0.452618 CAGCAAATACACCACGCACG 60.453 55.000 0.00 0.00 0.00 5.34
2540 8235 0.601576 AGCAAATACACCACGCACGA 60.602 50.000 0.00 0.00 0.00 4.35
2541 8236 0.446222 GCAAATACACCACGCACGAT 59.554 50.000 0.00 0.00 0.00 3.73
2542 8237 1.790123 GCAAATACACCACGCACGATG 60.790 52.381 0.00 0.00 0.00 3.84
2543 8238 0.446222 AAATACACCACGCACGATGC 59.554 50.000 0.00 0.00 40.69 3.91
2544 8239 1.366111 AATACACCACGCACGATGCC 61.366 55.000 0.00 0.00 41.12 4.40
2545 8240 2.514510 ATACACCACGCACGATGCCA 62.515 55.000 0.00 0.00 41.12 4.92
2553 8248 0.248215 CGCACGATGCCATTTTCTCC 60.248 55.000 0.00 0.00 41.12 3.71
2555 8250 1.086696 CACGATGCCATTTTCTCCGT 58.913 50.000 0.00 0.00 0.00 4.69
2557 8252 0.248215 CGATGCCATTTTCTCCGTGC 60.248 55.000 0.00 0.00 0.00 5.34
2564 8259 1.131126 CATTTTCTCCGTGCGCTGAAT 59.869 47.619 9.73 0.00 0.00 2.57
2573 8268 3.376859 TCCGTGCGCTGAATCAATTTTAT 59.623 39.130 9.73 0.00 0.00 1.40
2575 8270 4.341935 CGTGCGCTGAATCAATTTTATCA 58.658 39.130 9.73 0.00 0.00 2.15
2580 8275 5.559227 CGCTGAATCAATTTTATCACACGA 58.441 37.500 0.00 0.00 0.00 4.35
2583 8278 6.493449 TGAATCAATTTTATCACACGAGCA 57.507 33.333 0.00 0.00 0.00 4.26
2591 8286 9.075519 CAATTTTATCACACGAGCAATTATTGT 57.924 29.630 6.81 0.00 0.00 2.71
2599 8294 1.029408 AGCAATTATTGTGCGCCCGA 61.029 50.000 4.18 0.00 46.86 5.14
2667 8362 0.106708 CCTGCGGCTTATTCCTAGCA 59.893 55.000 0.00 0.00 40.42 3.49
2670 8365 0.106894 GCGGCTTATTCCTAGCACCT 59.893 55.000 0.00 0.00 40.42 4.00
2675 8370 3.370527 GGCTTATTCCTAGCACCTGTTGA 60.371 47.826 0.00 0.00 40.42 3.18
2681 8376 2.906389 TCCTAGCACCTGTTGAAGATGT 59.094 45.455 0.00 0.00 0.00 3.06
2688 8383 4.757149 GCACCTGTTGAAGATGTTCTTAGT 59.243 41.667 4.03 0.00 36.73 2.24
2700 8395 7.208064 AGATGTTCTTAGTGGGCCTAATAAA 57.792 36.000 10.35 0.00 35.14 1.40
2701 8396 7.639378 AGATGTTCTTAGTGGGCCTAATAAAA 58.361 34.615 10.35 5.41 35.14 1.52
2702 8397 8.113462 AGATGTTCTTAGTGGGCCTAATAAAAA 58.887 33.333 10.35 0.52 35.14 1.94
2703 8398 7.696992 TGTTCTTAGTGGGCCTAATAAAAAG 57.303 36.000 10.35 1.02 35.14 2.27
2704 8399 6.661805 TGTTCTTAGTGGGCCTAATAAAAAGG 59.338 38.462 10.35 0.00 35.14 3.11
2705 8400 6.645884 TCTTAGTGGGCCTAATAAAAAGGA 57.354 37.500 10.35 1.61 35.14 3.36
2706 8401 6.420638 TCTTAGTGGGCCTAATAAAAAGGAC 58.579 40.000 10.35 0.00 41.95 3.85
2707 8402 3.617284 AGTGGGCCTAATAAAAAGGACG 58.383 45.455 4.53 0.00 43.83 4.79
2708 8403 3.264964 AGTGGGCCTAATAAAAAGGACGA 59.735 43.478 4.53 0.00 43.83 4.20
2709 8404 3.626217 GTGGGCCTAATAAAAAGGACGAG 59.374 47.826 4.53 0.00 43.83 4.18
2710 8405 3.211865 GGGCCTAATAAAAAGGACGAGG 58.788 50.000 0.84 0.00 43.83 4.63
2711 8406 2.617308 GGCCTAATAAAAAGGACGAGGC 59.383 50.000 0.00 1.30 45.90 4.70
2712 8407 3.542648 GCCTAATAAAAAGGACGAGGCT 58.457 45.455 2.77 0.00 43.77 4.58
2713 8408 3.560481 GCCTAATAAAAAGGACGAGGCTC 59.440 47.826 3.87 3.87 43.77 4.70
2714 8409 4.766375 CCTAATAAAAAGGACGAGGCTCA 58.234 43.478 15.95 0.00 36.08 4.26
2715 8410 4.571176 CCTAATAAAAAGGACGAGGCTCAC 59.429 45.833 15.95 7.70 36.08 3.51
2716 8411 2.074547 TAAAAAGGACGAGGCTCACG 57.925 50.000 15.95 4.52 0.00 4.35
2717 8412 0.106149 AAAAAGGACGAGGCTCACGT 59.894 50.000 15.95 8.27 46.58 4.49
2722 8417 2.915659 ACGAGGCTCACGTCCCAA 60.916 61.111 15.95 0.00 39.87 4.12
2723 8418 2.283529 ACGAGGCTCACGTCCCAAT 61.284 57.895 15.95 0.00 39.87 3.16
2724 8419 0.968901 ACGAGGCTCACGTCCCAATA 60.969 55.000 15.95 0.00 39.87 1.90
2725 8420 0.174845 CGAGGCTCACGTCCCAATAA 59.825 55.000 15.95 0.00 0.00 1.40
2726 8421 1.404986 CGAGGCTCACGTCCCAATAAA 60.405 52.381 15.95 0.00 0.00 1.40
2727 8422 2.007608 GAGGCTCACGTCCCAATAAAC 58.992 52.381 10.25 0.00 0.00 2.01
2728 8423 1.092348 GGCTCACGTCCCAATAAACC 58.908 55.000 0.00 0.00 0.00 3.27
2729 8424 1.092348 GCTCACGTCCCAATAAACCC 58.908 55.000 0.00 0.00 0.00 4.11
2730 8425 1.365699 CTCACGTCCCAATAAACCCG 58.634 55.000 0.00 0.00 0.00 5.28
2731 8426 0.036199 TCACGTCCCAATAAACCCGG 60.036 55.000 0.00 0.00 0.00 5.73
2732 8427 0.036199 CACGTCCCAATAAACCCGGA 60.036 55.000 0.73 0.00 0.00 5.14
2733 8428 0.036105 ACGTCCCAATAAACCCGGAC 60.036 55.000 0.73 0.00 41.20 4.79
2734 8429 0.036199 CGTCCCAATAAACCCGGACA 60.036 55.000 0.73 0.00 44.20 4.02
2735 8430 1.746470 GTCCCAATAAACCCGGACAG 58.254 55.000 0.73 0.00 43.58 3.51
2736 8431 1.279846 GTCCCAATAAACCCGGACAGA 59.720 52.381 0.73 0.00 43.58 3.41
2737 8432 1.986631 TCCCAATAAACCCGGACAGAA 59.013 47.619 0.73 0.00 0.00 3.02
2738 8433 2.026636 TCCCAATAAACCCGGACAGAAG 60.027 50.000 0.73 0.00 0.00 2.85
2739 8434 2.365582 CCAATAAACCCGGACAGAAGG 58.634 52.381 0.73 0.00 0.00 3.46
2740 8435 2.026636 CCAATAAACCCGGACAGAAGGA 60.027 50.000 0.73 0.00 0.00 3.36
2741 8436 3.270877 CAATAAACCCGGACAGAAGGAG 58.729 50.000 0.73 0.00 0.00 3.69
2742 8437 2.019807 TAAACCCGGACAGAAGGAGT 57.980 50.000 0.73 0.00 0.00 3.85
2746 8441 0.684805 CCCGGACAGAAGGAGTAGCT 60.685 60.000 0.73 0.00 0.00 3.32
2748 8443 0.457851 CGGACAGAAGGAGTAGCTGG 59.542 60.000 0.00 0.00 34.05 4.85
2749 8444 0.176910 GGACAGAAGGAGTAGCTGGC 59.823 60.000 0.00 0.00 36.94 4.85
2750 8445 1.190643 GACAGAAGGAGTAGCTGGCT 58.809 55.000 0.00 0.00 34.83 4.75
2752 8447 2.360801 GACAGAAGGAGTAGCTGGCTAG 59.639 54.545 0.00 0.00 34.83 3.42
2753 8448 2.291930 ACAGAAGGAGTAGCTGGCTAGT 60.292 50.000 9.40 9.40 35.12 2.57
2754 8449 2.360801 CAGAAGGAGTAGCTGGCTAGTC 59.639 54.545 22.28 22.28 44.23 2.59
2757 8452 0.382515 GGAGTAGCTGGCTAGTCACG 59.617 60.000 27.84 0.00 45.82 4.35
2758 8453 0.248702 GAGTAGCTGGCTAGTCACGC 60.249 60.000 24.27 9.82 44.32 5.34
2762 8457 3.181967 CTGGCTAGTCACGCGTGC 61.182 66.667 33.63 26.51 0.00 5.34
2763 8458 3.914605 CTGGCTAGTCACGCGTGCA 62.915 63.158 33.63 22.30 0.00 4.57
2770 8465 3.049074 TCACGCGTGCATGCATGT 61.049 55.556 34.08 24.49 35.52 3.21
2774 8469 4.423022 GCGTGCATGCATGTGCCA 62.423 61.111 34.08 14.30 44.43 4.92
2779 8474 1.104577 TGCATGCATGTGCCATCGAT 61.105 50.000 26.79 0.00 44.43 3.59
2781 8476 0.663269 CATGCATGTGCCATCGATGC 60.663 55.000 20.25 15.19 42.38 3.91
2782 8477 3.112842 GCATGTGCCATCGATGCA 58.887 55.556 20.25 17.52 41.78 3.96
2783 8478 1.104577 TGCATGTGCCATCGATGCAT 61.105 50.000 20.25 14.55 45.76 3.96
2784 8479 0.663269 GCATGTGCCATCGATGCATG 60.663 55.000 26.93 26.93 41.78 4.06
2785 8480 0.948678 CATGTGCCATCGATGCATGA 59.051 50.000 27.10 16.87 41.46 3.07
2786 8481 1.335496 CATGTGCCATCGATGCATGAA 59.665 47.619 27.10 16.19 41.46 2.57
2789 8484 2.212652 GTGCCATCGATGCATGAAGTA 58.787 47.619 20.25 1.84 41.46 2.24
2790 8485 2.810274 GTGCCATCGATGCATGAAGTAT 59.190 45.455 20.25 0.00 41.46 2.12
2791 8486 3.996363 GTGCCATCGATGCATGAAGTATA 59.004 43.478 20.25 0.00 41.46 1.47
2792 8487 4.452114 GTGCCATCGATGCATGAAGTATAA 59.548 41.667 20.25 0.00 41.46 0.98
2793 8488 5.122869 GTGCCATCGATGCATGAAGTATAAT 59.877 40.000 20.25 0.00 41.46 1.28
2794 8489 6.313658 GTGCCATCGATGCATGAAGTATAATA 59.686 38.462 20.25 0.00 41.46 0.98
2796 8491 7.553760 TGCCATCGATGCATGAAGTATAATATT 59.446 33.333 20.25 0.00 32.85 1.28
2825 8520 8.918202 TTCTTGTGTCAGTTTCCTATACATTT 57.082 30.769 0.00 0.00 0.00 2.32
2826 8521 8.918202 TCTTGTGTCAGTTTCCTATACATTTT 57.082 30.769 0.00 0.00 0.00 1.82
2829 8524 9.787435 TTGTGTCAGTTTCCTATACATTTTAGT 57.213 29.630 0.00 0.00 0.00 2.24
2830 8525 9.431887 TGTGTCAGTTTCCTATACATTTTAGTC 57.568 33.333 0.00 0.00 0.00 2.59
2831 8526 9.654663 GTGTCAGTTTCCTATACATTTTAGTCT 57.345 33.333 0.00 0.00 0.00 3.24
2846 8541 9.686683 ACATTTTAGTCTAATCTTTGTAGGCAT 57.313 29.630 0.00 0.00 0.00 4.40
2869 8564 5.717078 ATATGCCCATGCTAATTTGTGAG 57.283 39.130 0.00 0.00 38.71 3.51
2870 8565 3.084536 TGCCCATGCTAATTTGTGAGA 57.915 42.857 0.00 0.00 38.71 3.27
2871 8566 3.634504 TGCCCATGCTAATTTGTGAGAT 58.365 40.909 0.00 0.00 38.71 2.75
2873 8568 3.382546 GCCCATGCTAATTTGTGAGATGT 59.617 43.478 0.00 0.00 33.53 3.06
2874 8569 4.580167 GCCCATGCTAATTTGTGAGATGTA 59.420 41.667 0.00 0.00 33.53 2.29
2875 8570 5.242393 GCCCATGCTAATTTGTGAGATGTAT 59.758 40.000 0.00 0.00 33.53 2.29
2876 8571 6.430925 GCCCATGCTAATTTGTGAGATGTATA 59.569 38.462 0.00 0.00 33.53 1.47
2878 8573 9.017509 CCCATGCTAATTTGTGAGATGTATAAT 57.982 33.333 0.00 0.00 0.00 1.28
2879 8574 9.836076 CCATGCTAATTTGTGAGATGTATAATG 57.164 33.333 0.00 0.00 0.00 1.90
2880 8575 9.836076 CATGCTAATTTGTGAGATGTATAATGG 57.164 33.333 0.00 0.00 0.00 3.16
2881 8576 9.797642 ATGCTAATTTGTGAGATGTATAATGGA 57.202 29.630 0.00 0.00 0.00 3.41
2882 8577 9.625747 TGCTAATTTGTGAGATGTATAATGGAA 57.374 29.630 0.00 0.00 0.00 3.53
2886 8581 8.682936 ATTTGTGAGATGTATAATGGAAGGAC 57.317 34.615 0.00 0.00 0.00 3.85
2887 8582 6.174720 TGTGAGATGTATAATGGAAGGACC 57.825 41.667 0.00 0.00 39.54 4.46
2895 8590 4.498346 TGGAAGGACCACGTACGA 57.502 55.556 24.41 0.00 44.64 3.43
2897 8592 1.213799 GGAAGGACCACGTACGACC 59.786 63.158 24.41 17.83 38.79 4.79
2898 8593 1.246737 GGAAGGACCACGTACGACCT 61.247 60.000 24.41 19.64 38.79 3.85
2899 8594 0.169894 GAAGGACCACGTACGACCTC 59.830 60.000 24.41 11.79 0.00 3.85
2900 8595 0.538057 AAGGACCACGTACGACCTCA 60.538 55.000 24.41 0.00 0.00 3.86
2901 8596 0.323178 AGGACCACGTACGACCTCAT 60.323 55.000 24.41 7.20 0.00 2.90
2903 8598 1.093159 GACCACGTACGACCTCATCT 58.907 55.000 24.41 0.00 0.00 2.90
2906 8601 1.269166 CACGTACGACCTCATCTTGC 58.731 55.000 24.41 0.00 0.00 4.01
2907 8602 0.179171 ACGTACGACCTCATCTTGCG 60.179 55.000 24.41 0.00 39.97 4.85
2908 8603 0.098200 CGTACGACCTCATCTTGCGA 59.902 55.000 10.44 0.00 36.92 5.10
2909 8604 1.546834 GTACGACCTCATCTTGCGAC 58.453 55.000 0.00 0.00 0.00 5.19
2910 8605 0.098200 TACGACCTCATCTTGCGACG 59.902 55.000 0.00 0.00 0.00 5.12
2913 8608 0.109272 GACCTCATCTTGCGACGACA 60.109 55.000 0.00 0.00 0.00 4.35
2916 8611 1.418373 CTCATCTTGCGACGACAACA 58.582 50.000 0.00 0.00 0.00 3.33
2917 8612 1.792367 CTCATCTTGCGACGACAACAA 59.208 47.619 0.00 0.00 0.00 2.83
2919 8614 1.526887 CATCTTGCGACGACAACAACT 59.473 47.619 0.00 0.00 0.00 3.16
2920 8615 1.647346 TCTTGCGACGACAACAACTT 58.353 45.000 0.00 0.00 0.00 2.66
2921 8616 1.326245 TCTTGCGACGACAACAACTTG 59.674 47.619 0.00 0.00 0.00 3.16
2922 8617 1.326245 CTTGCGACGACAACAACTTGA 59.674 47.619 0.00 0.00 0.00 3.02
2923 8618 0.927537 TGCGACGACAACAACTTGAG 59.072 50.000 0.00 0.00 0.00 3.02
2924 8619 0.232303 GCGACGACAACAACTTGAGG 59.768 55.000 0.00 0.00 0.00 3.86
2925 8620 1.567504 CGACGACAACAACTTGAGGT 58.432 50.000 0.00 0.00 0.00 3.85
2926 8621 2.734670 CGACGACAACAACTTGAGGTA 58.265 47.619 0.00 0.00 0.00 3.08
2927 8622 2.724690 CGACGACAACAACTTGAGGTAG 59.275 50.000 0.00 0.00 0.00 3.18
2928 8623 3.057734 GACGACAACAACTTGAGGTAGG 58.942 50.000 0.00 0.00 0.00 3.18
2929 8624 2.224209 ACGACAACAACTTGAGGTAGGG 60.224 50.000 0.00 0.00 0.00 3.53
2930 8625 2.036733 CGACAACAACTTGAGGTAGGGA 59.963 50.000 0.00 0.00 0.00 4.20
2931 8626 3.306780 CGACAACAACTTGAGGTAGGGAT 60.307 47.826 0.00 0.00 0.00 3.85
2932 8627 4.254492 GACAACAACTTGAGGTAGGGATC 58.746 47.826 0.00 0.00 0.00 3.36
2933 8628 3.910627 ACAACAACTTGAGGTAGGGATCT 59.089 43.478 0.00 0.00 0.00 2.75
2934 8629 4.351111 ACAACAACTTGAGGTAGGGATCTT 59.649 41.667 0.00 0.00 0.00 2.40
2935 8630 4.559862 ACAACTTGAGGTAGGGATCTTG 57.440 45.455 0.00 0.00 0.00 3.02
2936 8631 4.168101 ACAACTTGAGGTAGGGATCTTGA 58.832 43.478 0.00 0.00 0.00 3.02
2937 8632 4.785376 ACAACTTGAGGTAGGGATCTTGAT 59.215 41.667 0.00 0.00 0.00 2.57
2938 8633 5.104735 ACAACTTGAGGTAGGGATCTTGATC 60.105 44.000 2.21 2.21 0.00 2.92
2939 8634 4.624913 ACTTGAGGTAGGGATCTTGATCA 58.375 43.478 12.02 0.00 0.00 2.92
2940 8635 5.222870 ACTTGAGGTAGGGATCTTGATCAT 58.777 41.667 12.02 3.57 0.00 2.45
2941 8636 5.071519 ACTTGAGGTAGGGATCTTGATCATG 59.928 44.000 12.02 0.00 0.00 3.07
2942 8637 3.326006 TGAGGTAGGGATCTTGATCATGC 59.674 47.826 12.02 4.40 0.00 4.06
2943 8638 3.321039 AGGTAGGGATCTTGATCATGCA 58.679 45.455 12.02 0.00 0.00 3.96
2944 8639 3.915073 AGGTAGGGATCTTGATCATGCAT 59.085 43.478 12.02 0.00 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
288 292 2.356793 GATCAGGGCGCGGATCTG 60.357 66.667 28.34 16.26 37.52 2.90
455 461 2.430367 GGCGGTGGTGGAACTTCT 59.570 61.111 0.00 0.00 36.74 2.85
614 622 3.695606 GTGGTCTCTCTGCCGGCA 61.696 66.667 30.59 30.59 0.00 5.69
615 623 4.459089 GGTGGTCTCTCTGCCGGC 62.459 72.222 22.73 22.73 0.00 6.13
616 624 4.135153 CGGTGGTCTCTCTGCCGG 62.135 72.222 0.00 0.00 38.86 6.13
618 626 2.680352 TCCGGTGGTCTCTCTGCC 60.680 66.667 0.00 0.00 0.00 4.85
620 628 1.034838 CCTCTCCGGTGGTCTCTCTG 61.035 65.000 0.00 0.00 0.00 3.35
621 629 1.304952 CCTCTCCGGTGGTCTCTCT 59.695 63.158 0.00 0.00 0.00 3.10
623 631 2.363147 GCCTCTCCGGTGGTCTCT 60.363 66.667 0.00 0.00 34.25 3.10
624 632 2.363147 AGCCTCTCCGGTGGTCTC 60.363 66.667 0.00 0.00 34.25 3.36
625 633 2.681778 CAGCCTCTCCGGTGGTCT 60.682 66.667 0.00 2.15 34.25 3.85
626 634 2.997897 ACAGCCTCTCCGGTGGTC 60.998 66.667 0.00 0.00 34.25 4.02
628 636 4.135153 CGACAGCCTCTCCGGTGG 62.135 72.222 0.00 3.77 34.25 4.61
629 637 4.803426 GCGACAGCCTCTCCGGTG 62.803 72.222 0.00 0.00 37.42 4.94
675 683 3.496160 CCCCAGATCCAGCCCCTG 61.496 72.222 0.00 0.00 0.00 4.45
676 684 4.851252 CCCCCAGATCCAGCCCCT 62.851 72.222 0.00 0.00 0.00 4.79
699 707 4.410400 CACACCTTCCCCCTCCGC 62.410 72.222 0.00 0.00 0.00 5.54
700 708 3.717294 CCACACCTTCCCCCTCCG 61.717 72.222 0.00 0.00 0.00 4.63
701 709 3.339093 CCCACACCTTCCCCCTCC 61.339 72.222 0.00 0.00 0.00 4.30
702 710 3.339093 CCCCACACCTTCCCCCTC 61.339 72.222 0.00 0.00 0.00 4.30
703 711 3.882670 TCCCCACACCTTCCCCCT 61.883 66.667 0.00 0.00 0.00 4.79
704 712 3.339093 CTCCCCACACCTTCCCCC 61.339 72.222 0.00 0.00 0.00 5.40
705 713 1.619669 ATCTCCCCACACCTTCCCC 60.620 63.158 0.00 0.00 0.00 4.81
706 714 1.609783 CATCTCCCCACACCTTCCC 59.390 63.158 0.00 0.00 0.00 3.97
708 716 1.609783 CCCATCTCCCCACACCTTC 59.390 63.158 0.00 0.00 0.00 3.46
709 717 1.930656 CCCCATCTCCCCACACCTT 60.931 63.158 0.00 0.00 0.00 3.50
710 718 2.286425 CCCCATCTCCCCACACCT 60.286 66.667 0.00 0.00 0.00 4.00
711 719 1.926426 CTTCCCCATCTCCCCACACC 61.926 65.000 0.00 0.00 0.00 4.16
712 720 0.914417 TCTTCCCCATCTCCCCACAC 60.914 60.000 0.00 0.00 0.00 3.82
713 721 0.621571 CTCTTCCCCATCTCCCCACA 60.622 60.000 0.00 0.00 0.00 4.17
714 722 0.326618 TCTCTTCCCCATCTCCCCAC 60.327 60.000 0.00 0.00 0.00 4.61
716 724 1.596496 TTTCTCTTCCCCATCTCCCC 58.404 55.000 0.00 0.00 0.00 4.81
717 725 3.245264 TGTTTTTCTCTTCCCCATCTCCC 60.245 47.826 0.00 0.00 0.00 4.30
720 728 3.425659 GCTGTTTTTCTCTTCCCCATCT 58.574 45.455 0.00 0.00 0.00 2.90
721 729 2.493675 GGCTGTTTTTCTCTTCCCCATC 59.506 50.000 0.00 0.00 0.00 3.51
723 731 1.499007 AGGCTGTTTTTCTCTTCCCCA 59.501 47.619 0.00 0.00 0.00 4.96
724 732 2.163509 GAGGCTGTTTTTCTCTTCCCC 58.836 52.381 0.00 0.00 0.00 4.81
725 733 1.807142 CGAGGCTGTTTTTCTCTTCCC 59.193 52.381 0.00 0.00 0.00 3.97
726 734 1.197949 GCGAGGCTGTTTTTCTCTTCC 59.802 52.381 0.00 0.00 0.00 3.46
727 735 1.197949 GGCGAGGCTGTTTTTCTCTTC 59.802 52.381 0.00 0.00 0.00 2.87
728 736 1.239347 GGCGAGGCTGTTTTTCTCTT 58.761 50.000 0.00 0.00 0.00 2.85
729 737 0.951040 CGGCGAGGCTGTTTTTCTCT 60.951 55.000 0.00 0.00 0.00 3.10
730 738 1.497722 CGGCGAGGCTGTTTTTCTC 59.502 57.895 0.00 0.00 0.00 2.87
731 739 2.617274 GCGGCGAGGCTGTTTTTCT 61.617 57.895 12.98 0.00 37.24 2.52
733 741 3.670377 GGCGGCGAGGCTGTTTTT 61.670 61.111 12.98 0.00 42.90 1.94
844 852 3.787001 CTCGGGGGAACTCTGGCC 61.787 72.222 0.00 0.00 0.00 5.36
845 853 3.003763 ACTCGGGGGAACTCTGGC 61.004 66.667 0.00 0.00 0.00 4.85
846 854 2.711922 CGACTCGGGGGAACTCTGG 61.712 68.421 0.00 0.00 0.00 3.86
847 855 2.885861 CGACTCGGGGGAACTCTG 59.114 66.667 0.00 0.00 0.00 3.35
849 857 4.144703 GGCGACTCGGGGGAACTC 62.145 72.222 0.00 0.00 0.00 3.01
886 894 3.767806 GTTCTCCCCCGTCCCGTC 61.768 72.222 0.00 0.00 0.00 4.79
887 895 4.626402 TGTTCTCCCCCGTCCCGT 62.626 66.667 0.00 0.00 0.00 5.28
888 896 4.078516 GTGTTCTCCCCCGTCCCG 62.079 72.222 0.00 0.00 0.00 5.14
889 897 4.078516 CGTGTTCTCCCCCGTCCC 62.079 72.222 0.00 0.00 0.00 4.46
890 898 4.078516 CCGTGTTCTCCCCCGTCC 62.079 72.222 0.00 0.00 0.00 4.79
891 899 4.078516 CCCGTGTTCTCCCCCGTC 62.079 72.222 0.00 0.00 0.00 4.79
895 903 3.782443 ATCGCCCGTGTTCTCCCC 61.782 66.667 0.00 0.00 0.00 4.81
896 904 2.511600 CATCGCCCGTGTTCTCCC 60.512 66.667 0.00 0.00 0.00 4.30
898 906 0.108804 TCTTCATCGCCCGTGTTCTC 60.109 55.000 0.00 0.00 0.00 2.87
899 907 0.389948 GTCTTCATCGCCCGTGTTCT 60.390 55.000 0.00 0.00 0.00 3.01
900 908 0.389948 AGTCTTCATCGCCCGTGTTC 60.390 55.000 0.00 0.00 0.00 3.18
901 909 0.034896 AAGTCTTCATCGCCCGTGTT 59.965 50.000 0.00 0.00 0.00 3.32
902 910 0.389948 GAAGTCTTCATCGCCCGTGT 60.390 55.000 7.76 0.00 0.00 4.49
903 911 0.389817 TGAAGTCTTCATCGCCCGTG 60.390 55.000 11.36 0.00 34.08 4.94
904 912 0.389948 GTGAAGTCTTCATCGCCCGT 60.390 55.000 18.08 0.00 42.47 5.28
905 913 1.413767 CGTGAAGTCTTCATCGCCCG 61.414 60.000 18.08 12.38 42.47 6.13
906 914 0.108804 TCGTGAAGTCTTCATCGCCC 60.109 55.000 18.08 4.52 42.47 6.13
907 915 1.272781 CTCGTGAAGTCTTCATCGCC 58.727 55.000 18.08 4.88 42.47 5.54
1012 1036 2.364324 GGACATGGCCTCTCGTGTATTA 59.636 50.000 11.56 0.00 37.05 0.98
1143 1167 2.969238 CGACGATGGAGCCCATGC 60.969 66.667 10.99 3.49 45.26 4.06
1160 1184 1.892468 ATGAGTACGAACGAGAACGC 58.108 50.000 0.14 0.00 43.96 4.84
1161 1185 5.392874 CAGATAATGAGTACGAACGAGAACG 59.607 44.000 0.14 0.00 45.75 3.95
1167 1191 4.201980 TGACCCAGATAATGAGTACGAACG 60.202 45.833 0.00 0.00 0.00 3.95
1180 1204 1.412710 GCGATGAAGGTGACCCAGATA 59.587 52.381 0.00 0.00 0.00 1.98
1181 1205 0.179000 GCGATGAAGGTGACCCAGAT 59.821 55.000 0.00 0.00 0.00 2.90
1210 1234 1.206072 GAAGCAGCACAAGAGCGTG 59.794 57.895 0.00 0.00 40.15 5.34
1211 1235 1.227645 TGAAGCAGCACAAGAGCGT 60.228 52.632 0.00 0.00 40.15 5.07
1212 1236 1.206072 GTGAAGCAGCACAAGAGCG 59.794 57.895 0.00 0.00 38.63 5.03
1214 1238 0.882042 ACGGTGAAGCAGCACAAGAG 60.882 55.000 10.52 2.66 40.52 2.85
1217 1241 0.880278 GAGACGGTGAAGCAGCACAA 60.880 55.000 10.52 0.00 40.52 3.33
1219 1243 2.375766 CGAGACGGTGAAGCAGCAC 61.376 63.158 0.00 0.75 38.05 4.40
1220 1244 2.049156 CGAGACGGTGAAGCAGCA 60.049 61.111 0.00 0.00 0.00 4.41
1222 1246 2.259818 AGCGAGACGGTGAAGCAG 59.740 61.111 0.00 0.00 35.85 4.24
1516 5347 1.081277 GTCCCCCTTCTCCACCTCT 59.919 63.158 0.00 0.00 0.00 3.69
1574 5405 4.111016 CGGGTCGACGCACTGCTA 62.111 66.667 29.06 0.00 0.00 3.49
1692 6124 4.386867 TTCACGTCTTTGAGTTCTCTGT 57.613 40.909 1.53 0.00 0.00 3.41
1759 6223 1.153939 CGTCAGAAGCCTCACTCGG 60.154 63.158 0.00 0.00 0.00 4.63
1832 6296 9.628746 TGTTGATTGATTCATTGACTTAATGTG 57.371 29.630 0.00 0.00 45.17 3.21
1842 6796 6.643360 TGCTCAACTTGTTGATTGATTCATTG 59.357 34.615 15.35 3.04 34.43 2.82
1846 6800 7.306983 CCTTTTGCTCAACTTGTTGATTGATTC 60.307 37.037 15.35 3.89 34.43 2.52
1872 6826 2.285660 GCGATACCGTAAGCTTTGCTTC 60.286 50.000 3.20 0.84 40.54 3.86
1880 6834 1.352114 TGTTGTGCGATACCGTAAGC 58.648 50.000 0.00 3.27 38.24 3.09
1905 7102 1.109920 GGCGAGCTACTCATGGAGGA 61.110 60.000 0.00 0.00 33.35 3.71
1912 7109 1.134699 CAAAGGATGGCGAGCTACTCA 60.135 52.381 0.00 0.00 0.00 3.41
1948 7149 8.961092 CCATTGAGATTATTTTCAAACGCTATG 58.039 33.333 0.00 0.00 36.93 2.23
1966 7167 2.487762 GTTCGGTCAAATGCCATTGAGA 59.512 45.455 1.83 0.00 39.84 3.27
1977 7178 0.817634 CTGGCAGGTGTTCGGTCAAA 60.818 55.000 6.61 0.00 0.00 2.69
1993 7194 1.728425 GTTTTTAGTACCGACGCCTGG 59.272 52.381 0.00 0.00 0.00 4.45
2083 7284 3.499029 GGCCCCCACTATGTCCCC 61.499 72.222 0.00 0.00 0.00 4.81
2084 7285 2.694616 TGGCCCCCACTATGTCCC 60.695 66.667 0.00 0.00 0.00 4.46
2099 7300 2.104331 CGCGCTACTACCAGGTGG 59.896 66.667 5.56 0.49 42.17 4.61
2103 7304 2.191513 TAGGCCGCGCTACTACCAG 61.192 63.158 5.56 0.00 0.00 4.00
2105 7306 2.334295 GTAGGCCGCGCTACTACC 59.666 66.667 17.09 7.19 32.86 3.18
2126 7327 4.097863 GTTAGTTGCGGCGTGGGC 62.098 66.667 9.37 0.00 38.90 5.36
2146 7347 2.160813 CCAAAAACGGCGCTACAAGTAT 59.839 45.455 6.90 0.00 0.00 2.12
2198 7399 2.654749 TAGCGCGATATAGCAAGCAT 57.345 45.000 12.10 0.00 36.85 3.79
2210 7472 3.371102 AGATGCTTAGAAATAGCGCGA 57.629 42.857 12.10 0.00 41.54 5.87
2253 7515 6.927381 GCAAGTATAATAGGGTGACGTAACAT 59.073 38.462 5.18 0.00 33.84 2.71
2260 7522 7.379750 CCTAAGAGCAAGTATAATAGGGTGAC 58.620 42.308 0.00 0.00 0.00 3.67
2264 7526 7.554959 TTCCCTAAGAGCAAGTATAATAGGG 57.445 40.000 8.38 8.38 46.22 3.53
2286 7548 4.678509 TTCCACGCACTTCATGTTATTC 57.321 40.909 0.00 0.00 0.00 1.75
2385 8080 3.626924 CTTCCCCGCCTATCCCCG 61.627 72.222 0.00 0.00 0.00 5.73
2387 8082 4.315941 CGCTTCCCCGCCTATCCC 62.316 72.222 0.00 0.00 0.00 3.85
2398 8093 4.373116 TGACCCGTCAGCGCTTCC 62.373 66.667 7.50 0.00 34.14 3.46
2454 8149 0.463620 GACATGAGAGACCTCCAGGC 59.536 60.000 0.00 0.00 38.66 4.85
2471 8166 0.669625 AACTTCGCCAACCGCTAGAC 60.670 55.000 0.00 0.00 36.73 2.59
2484 8179 4.059459 AACTCGCGCGCAACTTCG 62.059 61.111 32.61 13.86 0.00 3.79
2511 8206 3.507924 TATTTGCTGCGCCCGCTG 61.508 61.111 17.83 14.06 42.51 5.18
2516 8211 1.154035 GTGGTGTATTTGCTGCGCC 60.154 57.895 4.18 0.00 40.28 6.53
2522 8217 0.446222 ATCGTGCGTGGTGTATTTGC 59.554 50.000 0.00 0.00 0.00 3.68
2531 8226 0.798009 GAAAATGGCATCGTGCGTGG 60.798 55.000 0.00 0.00 46.21 4.94
2533 8228 0.447801 GAGAAAATGGCATCGTGCGT 59.552 50.000 0.00 0.00 46.21 5.24
2536 8231 1.086696 ACGGAGAAAATGGCATCGTG 58.913 50.000 8.58 0.00 0.00 4.35
2537 8232 1.086696 CACGGAGAAAATGGCATCGT 58.913 50.000 0.00 1.63 0.00 3.73
2538 8233 0.248215 GCACGGAGAAAATGGCATCG 60.248 55.000 0.00 0.90 0.00 3.84
2539 8234 0.248215 CGCACGGAGAAAATGGCATC 60.248 55.000 0.00 0.00 0.00 3.91
2540 8235 1.802636 CGCACGGAGAAAATGGCAT 59.197 52.632 0.00 0.00 0.00 4.40
2541 8236 2.976840 GCGCACGGAGAAAATGGCA 61.977 57.895 0.30 0.00 0.00 4.92
2542 8237 2.202479 GCGCACGGAGAAAATGGC 60.202 61.111 0.30 0.00 0.00 4.40
2543 8238 1.135315 CAGCGCACGGAGAAAATGG 59.865 57.895 11.47 0.00 0.00 3.16
2544 8239 0.516877 TTCAGCGCACGGAGAAAATG 59.483 50.000 11.47 0.00 0.00 2.32
2545 8240 1.398390 GATTCAGCGCACGGAGAAAAT 59.602 47.619 11.47 0.00 0.00 1.82
2553 8248 4.202959 GTGATAAAATTGATTCAGCGCACG 59.797 41.667 11.47 0.00 0.00 5.34
2555 8250 5.094812 GTGTGATAAAATTGATTCAGCGCA 58.905 37.500 11.47 0.00 0.00 6.09
2557 8252 5.559227 TCGTGTGATAAAATTGATTCAGCG 58.441 37.500 0.00 0.00 0.00 5.18
2564 8259 9.288124 CAATAATTGCTCGTGTGATAAAATTGA 57.712 29.630 0.00 0.00 0.00 2.57
2573 8268 2.159720 CGCACAATAATTGCTCGTGTGA 60.160 45.455 6.30 0.00 41.67 3.58
2575 8270 1.465689 GCGCACAATAATTGCTCGTGT 60.466 47.619 0.30 0.00 37.87 4.49
2580 8275 1.029408 TCGGGCGCACAATAATTGCT 61.029 50.000 11.77 0.00 37.87 3.91
2583 8278 0.667993 CCATCGGGCGCACAATAATT 59.332 50.000 11.77 0.00 0.00 1.40
2599 8294 3.991051 CCGATACGCCCGCTCCAT 61.991 66.667 0.00 0.00 0.00 3.41
2649 8344 1.221414 GTGCTAGGAATAAGCCGCAG 58.779 55.000 0.00 0.00 39.30 5.18
2661 8356 3.340814 ACATCTTCAACAGGTGCTAGG 57.659 47.619 0.00 0.00 37.07 3.02
2667 8362 5.308825 CCACTAAGAACATCTTCAACAGGT 58.691 41.667 0.00 0.00 37.89 4.00
2670 8365 4.072131 GCCCACTAAGAACATCTTCAACA 58.928 43.478 0.00 0.00 37.89 3.33
2675 8370 5.717119 ATTAGGCCCACTAAGAACATCTT 57.283 39.130 0.00 0.00 44.43 2.40
2681 8376 6.888088 GTCCTTTTTATTAGGCCCACTAAGAA 59.112 38.462 0.00 0.00 44.43 2.52
2688 8383 3.371166 CCTCGTCCTTTTTATTAGGCCCA 60.371 47.826 0.00 0.00 32.59 5.36
2700 8395 3.456317 ACGTGAGCCTCGTCCTTT 58.544 55.556 0.00 0.00 36.85 3.11
2705 8400 0.968901 TATTGGGACGTGAGCCTCGT 60.969 55.000 0.00 2.65 44.27 4.18
2706 8401 0.174845 TTATTGGGACGTGAGCCTCG 59.825 55.000 0.00 0.00 0.00 4.63
2707 8402 2.007608 GTTTATTGGGACGTGAGCCTC 58.992 52.381 0.00 0.00 0.00 4.70
2708 8403 1.339727 GGTTTATTGGGACGTGAGCCT 60.340 52.381 0.00 0.00 0.00 4.58
2709 8404 1.092348 GGTTTATTGGGACGTGAGCC 58.908 55.000 0.00 0.00 0.00 4.70
2710 8405 1.092348 GGGTTTATTGGGACGTGAGC 58.908 55.000 0.00 0.00 0.00 4.26
2711 8406 1.365699 CGGGTTTATTGGGACGTGAG 58.634 55.000 0.00 0.00 0.00 3.51
2712 8407 0.036199 CCGGGTTTATTGGGACGTGA 60.036 55.000 0.00 0.00 0.00 4.35
2713 8408 0.036199 TCCGGGTTTATTGGGACGTG 60.036 55.000 0.00 0.00 0.00 4.49
2714 8409 0.036105 GTCCGGGTTTATTGGGACGT 60.036 55.000 0.00 0.00 39.53 4.34
2715 8410 2.771435 GTCCGGGTTTATTGGGACG 58.229 57.895 0.00 0.00 39.53 4.79
2717 8412 1.659022 TCTGTCCGGGTTTATTGGGA 58.341 50.000 0.00 0.00 0.00 4.37
2718 8413 2.365582 CTTCTGTCCGGGTTTATTGGG 58.634 52.381 0.00 0.00 0.00 4.12
2719 8414 2.026636 TCCTTCTGTCCGGGTTTATTGG 60.027 50.000 0.00 0.00 0.00 3.16
2720 8415 3.270877 CTCCTTCTGTCCGGGTTTATTG 58.729 50.000 0.00 0.00 0.00 1.90
2721 8416 2.910977 ACTCCTTCTGTCCGGGTTTATT 59.089 45.455 0.00 0.00 0.00 1.40
2722 8417 2.547990 ACTCCTTCTGTCCGGGTTTAT 58.452 47.619 0.00 0.00 0.00 1.40
2723 8418 2.019807 ACTCCTTCTGTCCGGGTTTA 57.980 50.000 0.00 0.00 0.00 2.01
2724 8419 1.900486 CTACTCCTTCTGTCCGGGTTT 59.100 52.381 0.00 0.00 0.00 3.27
2725 8420 1.558233 CTACTCCTTCTGTCCGGGTT 58.442 55.000 0.00 0.00 0.00 4.11
2726 8421 0.971447 GCTACTCCTTCTGTCCGGGT 60.971 60.000 0.00 0.00 0.00 5.28
2727 8422 0.684805 AGCTACTCCTTCTGTCCGGG 60.685 60.000 0.00 0.00 0.00 5.73
2728 8423 0.457851 CAGCTACTCCTTCTGTCCGG 59.542 60.000 0.00 0.00 0.00 5.14
2729 8424 0.457851 CCAGCTACTCCTTCTGTCCG 59.542 60.000 0.00 0.00 0.00 4.79
2730 8425 0.176910 GCCAGCTACTCCTTCTGTCC 59.823 60.000 0.00 0.00 0.00 4.02
2731 8426 1.190643 AGCCAGCTACTCCTTCTGTC 58.809 55.000 0.00 0.00 0.00 3.51
2732 8427 2.291930 ACTAGCCAGCTACTCCTTCTGT 60.292 50.000 0.00 0.00 0.00 3.41
2733 8428 2.360801 GACTAGCCAGCTACTCCTTCTG 59.639 54.545 0.00 0.00 0.00 3.02
2734 8429 2.024846 TGACTAGCCAGCTACTCCTTCT 60.025 50.000 0.00 0.00 0.00 2.85
2735 8430 2.100087 GTGACTAGCCAGCTACTCCTTC 59.900 54.545 0.00 0.00 0.00 3.46
2736 8431 2.104170 GTGACTAGCCAGCTACTCCTT 58.896 52.381 0.00 0.00 0.00 3.36
2737 8432 1.770294 GTGACTAGCCAGCTACTCCT 58.230 55.000 0.00 0.00 0.00 3.69
2738 8433 0.382515 CGTGACTAGCCAGCTACTCC 59.617 60.000 0.00 0.00 0.00 3.85
2739 8434 0.248702 GCGTGACTAGCCAGCTACTC 60.249 60.000 0.00 0.00 0.00 2.59
2740 8435 1.810532 GCGTGACTAGCCAGCTACT 59.189 57.895 0.00 0.00 0.00 2.57
2741 8436 1.586564 CGCGTGACTAGCCAGCTAC 60.587 63.158 0.00 0.00 0.00 3.58
2742 8437 2.044555 ACGCGTGACTAGCCAGCTA 61.045 57.895 12.93 0.00 0.00 3.32
2746 8441 3.295304 ATGCACGCGTGACTAGCCA 62.295 57.895 41.19 27.48 0.00 4.75
2748 8443 2.697425 CATGCACGCGTGACTAGC 59.303 61.111 41.19 26.07 35.09 3.42
2749 8444 1.423721 ATGCATGCACGCGTGACTAG 61.424 55.000 41.19 26.13 35.09 2.57
2750 8445 1.447663 ATGCATGCACGCGTGACTA 60.448 52.632 41.19 25.83 35.09 2.59
2762 8457 3.275286 TGCATCGATGGCACATGCATG 62.275 52.381 26.00 25.09 46.22 4.06
2763 8458 1.104577 TGCATCGATGGCACATGCAT 61.105 50.000 26.00 0.00 46.22 3.96
2770 8465 2.618442 TACTTCATGCATCGATGGCA 57.382 45.000 26.00 22.52 46.66 4.92
2799 8494 9.520515 AAATGTATAGGAAACTGACACAAGAAT 57.479 29.630 0.00 0.00 43.88 2.40
2800 8495 8.918202 AAATGTATAGGAAACTGACACAAGAA 57.082 30.769 0.00 0.00 43.88 2.52
2801 8496 8.918202 AAAATGTATAGGAAACTGACACAAGA 57.082 30.769 0.00 0.00 43.88 3.02
2804 8499 9.431887 GACTAAAATGTATAGGAAACTGACACA 57.568 33.333 0.00 0.00 43.88 3.72
2805 8500 9.654663 AGACTAAAATGTATAGGAAACTGACAC 57.345 33.333 0.00 0.00 43.88 3.67
2820 8515 9.686683 ATGCCTACAAAGATTAGACTAAAATGT 57.313 29.630 0.00 5.21 0.00 2.71
2844 8539 7.121611 TCTCACAAATTAGCATGGGCATATATG 59.878 37.037 8.45 8.45 44.61 1.78
2845 8540 7.177184 TCTCACAAATTAGCATGGGCATATAT 58.823 34.615 0.00 0.00 44.61 0.86
2846 8541 6.541907 TCTCACAAATTAGCATGGGCATATA 58.458 36.000 0.00 0.00 44.61 0.86
2848 8543 4.790937 TCTCACAAATTAGCATGGGCATA 58.209 39.130 0.00 0.00 44.61 3.14
2849 8544 3.634504 TCTCACAAATTAGCATGGGCAT 58.365 40.909 0.00 0.00 44.61 4.40
2850 8545 3.084536 TCTCACAAATTAGCATGGGCA 57.915 42.857 0.00 0.00 44.61 5.36
2851 8546 3.382546 ACATCTCACAAATTAGCATGGGC 59.617 43.478 0.00 0.00 41.61 5.36
2852 8547 6.889301 ATACATCTCACAAATTAGCATGGG 57.111 37.500 0.00 0.00 0.00 4.00
2853 8548 9.836076 CATTATACATCTCACAAATTAGCATGG 57.164 33.333 0.00 0.00 0.00 3.66
2854 8549 9.836076 CCATTATACATCTCACAAATTAGCATG 57.164 33.333 0.00 0.00 0.00 4.06
2856 8551 9.625747 TTCCATTATACATCTCACAAATTAGCA 57.374 29.630 0.00 0.00 0.00 3.49
2860 8555 9.125026 GTCCTTCCATTATACATCTCACAAATT 57.875 33.333 0.00 0.00 0.00 1.82
2861 8556 7.721399 GGTCCTTCCATTATACATCTCACAAAT 59.279 37.037 0.00 0.00 35.97 2.32
2862 8557 7.054124 GGTCCTTCCATTATACATCTCACAAA 58.946 38.462 0.00 0.00 35.97 2.83
2864 8559 5.665360 TGGTCCTTCCATTATACATCTCACA 59.335 40.000 0.00 0.00 41.93 3.58
2878 8573 1.526575 GGTCGTACGTGGTCCTTCCA 61.527 60.000 16.05 0.00 45.01 3.53
2879 8574 1.213799 GGTCGTACGTGGTCCTTCC 59.786 63.158 16.05 3.05 0.00 3.46
2880 8575 0.169894 GAGGTCGTACGTGGTCCTTC 59.830 60.000 16.05 9.21 0.00 3.46
2881 8576 0.538057 TGAGGTCGTACGTGGTCCTT 60.538 55.000 16.05 4.69 0.00 3.36
2882 8577 0.323178 ATGAGGTCGTACGTGGTCCT 60.323 55.000 16.05 17.24 0.00 3.85
2883 8578 0.100146 GATGAGGTCGTACGTGGTCC 59.900 60.000 16.05 13.11 0.00 4.46
2885 8580 1.201647 CAAGATGAGGTCGTACGTGGT 59.798 52.381 16.05 0.06 0.00 4.16
2886 8581 1.909376 CAAGATGAGGTCGTACGTGG 58.091 55.000 16.05 0.00 0.00 4.94
2887 8582 1.269166 GCAAGATGAGGTCGTACGTG 58.731 55.000 16.05 3.74 0.00 4.49
2889 8584 0.098200 TCGCAAGATGAGGTCGTACG 59.902 55.000 9.53 9.53 45.01 3.67
2899 8594 6.299259 TCAAGTTGTTGTCGTCGCAAGATG 62.299 45.833 2.11 0.00 42.56 2.90
2900 8595 4.288915 TCAAGTTGTTGTCGTCGCAAGAT 61.289 43.478 2.11 0.00 41.17 2.40
2901 8596 2.991597 TCAAGTTGTTGTCGTCGCAAGA 60.992 45.455 2.11 0.00 38.45 3.02
2903 8598 1.326245 CTCAAGTTGTTGTCGTCGCAA 59.674 47.619 2.11 0.00 34.98 4.85
2906 8601 1.567504 ACCTCAAGTTGTTGTCGTCG 58.432 50.000 2.11 0.00 34.98 5.12
2907 8602 3.057734 CCTACCTCAAGTTGTTGTCGTC 58.942 50.000 2.11 0.00 34.98 4.20
2908 8603 2.224209 CCCTACCTCAAGTTGTTGTCGT 60.224 50.000 2.11 0.00 34.98 4.34
2909 8604 2.036733 TCCCTACCTCAAGTTGTTGTCG 59.963 50.000 2.11 0.00 34.98 4.35
2910 8605 3.764237 TCCCTACCTCAAGTTGTTGTC 57.236 47.619 2.11 0.00 34.98 3.18
2913 8608 4.597507 TCAAGATCCCTACCTCAAGTTGTT 59.402 41.667 2.11 0.00 0.00 2.83
2916 8611 5.032846 TGATCAAGATCCCTACCTCAAGTT 58.967 41.667 7.54 0.00 37.02 2.66
2917 8612 4.624913 TGATCAAGATCCCTACCTCAAGT 58.375 43.478 7.54 0.00 37.02 3.16
2919 8614 4.202398 GCATGATCAAGATCCCTACCTCAA 60.202 45.833 0.00 0.00 37.02 3.02
2920 8615 3.326006 GCATGATCAAGATCCCTACCTCA 59.674 47.826 0.00 0.00 37.02 3.86
2921 8616 3.326006 TGCATGATCAAGATCCCTACCTC 59.674 47.826 0.00 0.00 37.02 3.85
2922 8617 3.321039 TGCATGATCAAGATCCCTACCT 58.679 45.455 0.00 0.00 37.02 3.08
2923 8618 3.777106 TGCATGATCAAGATCCCTACC 57.223 47.619 0.00 0.00 37.02 3.18



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.