Multiple sequence alignment - TraesCS3D01G405700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G405700 chr3D 100.000 3605 0 0 1 3605 520162597 520158993 0.000000e+00 6658.0
1 TraesCS3D01G405700 chr3D 92.000 125 8 1 511 635 520328230 520328352 1.330000e-39 174.0
2 TraesCS3D01G405700 chr3D 100.000 43 0 0 143 185 406800949 406800907 2.980000e-11 80.5
3 TraesCS3D01G405700 chr3D 100.000 43 0 0 143 185 602871419 602871377 2.980000e-11 80.5
4 TraesCS3D01G405700 chr3B 91.304 1978 97 24 787 2717 684645203 684643254 0.000000e+00 2630.0
5 TraesCS3D01G405700 chr3B 88.216 1833 128 40 509 2283 685307971 685309773 0.000000e+00 2108.0
6 TraesCS3D01G405700 chr3B 85.362 608 36 23 2277 2831 685317111 685317718 6.710000e-162 580.0
7 TraesCS3D01G405700 chr3B 98.462 325 4 1 185 509 92179909 92180232 4.040000e-159 571.0
8 TraesCS3D01G405700 chr3B 91.071 392 22 10 2927 3318 685317866 685318244 5.340000e-143 518.0
9 TraesCS3D01G405700 chr3B 88.031 259 22 4 3329 3586 685318447 685318697 7.570000e-77 298.0
10 TraesCS3D01G405700 chr3B 91.538 130 9 2 2775 2904 685317749 685317876 1.030000e-40 178.0
11 TraesCS3D01G405700 chr3B 88.235 119 5 1 517 635 684646552 684646443 2.260000e-27 134.0
12 TraesCS3D01G405700 chr3A 92.670 1719 60 24 706 2372 655588119 655586415 0.000000e+00 2416.0
13 TraesCS3D01G405700 chr3A 92.702 1247 35 18 2370 3605 655586171 655584970 0.000000e+00 1748.0
14 TraesCS3D01G405700 chrUn 99.077 325 2 1 185 509 273239301 273239624 1.870000e-162 582.0
15 TraesCS3D01G405700 chrUn 95.833 144 6 0 1 144 186158206 186158063 2.160000e-57 233.0
16 TraesCS3D01G405700 chrUn 95.139 144 7 0 1 144 45084084 45083941 1.010000e-55 228.0
17 TraesCS3D01G405700 chrUn 95.139 144 7 0 1 144 182432277 182432420 1.010000e-55 228.0
18 TraesCS3D01G405700 chrUn 95.139 144 7 0 1 144 182461767 182461910 1.010000e-55 228.0
19 TraesCS3D01G405700 chrUn 95.139 144 7 0 1 144 391699330 391699187 1.010000e-55 228.0
20 TraesCS3D01G405700 chrUn 100.000 43 0 0 143 185 170996641 170996683 2.980000e-11 80.5
21 TraesCS3D01G405700 chrUn 100.000 43 0 0 143 185 456051136 456051178 2.980000e-11 80.5
22 TraesCS3D01G405700 chr7D 99.077 325 2 1 185 509 382014367 382014044 1.870000e-162 582.0
23 TraesCS3D01G405700 chr7D 95.833 144 6 0 1 144 381956639 381956496 2.160000e-57 233.0
24 TraesCS3D01G405700 chr4D 99.077 325 2 1 185 509 123368145 123368468 1.870000e-162 582.0
25 TraesCS3D01G405700 chr4D 98.769 325 3 1 185 509 6629605 6629928 8.680000e-161 577.0
26 TraesCS3D01G405700 chr4D 98.769 325 3 1 185 509 123579096 123579419 8.680000e-161 577.0
27 TraesCS3D01G405700 chr4D 100.000 43 0 0 143 185 123389869 123389911 2.980000e-11 80.5
28 TraesCS3D01G405700 chr4D 100.000 43 0 0 143 185 123547531 123547573 2.980000e-11 80.5
29 TraesCS3D01G405700 chr7A 98.471 327 4 1 185 511 734974086 734973761 3.120000e-160 575.0
30 TraesCS3D01G405700 chr7A 98.462 325 4 1 185 509 671960064 671959741 4.040000e-159 571.0
31 TraesCS3D01G405700 chr7A 95.833 144 6 0 1 144 60205368 60205225 2.160000e-57 233.0
32 TraesCS3D01G405700 chr5A 98.462 325 4 1 185 509 16622770 16622447 4.040000e-159 571.0
33 TraesCS3D01G405700 chr5A 95.804 143 6 0 2 144 420163549 420163691 7.780000e-57 231.0
34 TraesCS3D01G405700 chr7B 96.528 144 5 0 1 144 742905013 742905156 4.650000e-59 239.0
35 TraesCS3D01G405700 chr1D 100.000 43 0 0 143 185 212457226 212457184 2.980000e-11 80.5
36 TraesCS3D01G405700 chr1D 100.000 43 0 0 143 185 362740234 362740276 2.980000e-11 80.5
37 TraesCS3D01G405700 chr1A 100.000 43 0 0 143 185 94675591 94675549 2.980000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G405700 chr3D 520158993 520162597 3604 True 6658.0 6658 100.0000 1 3605 1 chr3D.!!$R2 3604
1 TraesCS3D01G405700 chr3B 685307971 685309773 1802 False 2108.0 2108 88.2160 509 2283 1 chr3B.!!$F2 1774
2 TraesCS3D01G405700 chr3B 684643254 684646552 3298 True 1382.0 2630 89.7695 517 2717 2 chr3B.!!$R1 2200
3 TraesCS3D01G405700 chr3B 685317111 685318697 1586 False 393.5 580 89.0005 2277 3586 4 chr3B.!!$F3 1309
4 TraesCS3D01G405700 chr3A 655584970 655588119 3149 True 2082.0 2416 92.6860 706 3605 2 chr3A.!!$R1 2899

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.026803 GCGCACTGATTGAATCGACC 59.973 55.0 0.3 0.0 0.00 4.79 F
326 327 0.034059 CCCACCTAGCTGAATAGGCG 59.966 60.0 0.0 0.0 45.43 5.52 F
1884 3047 0.036010 CAAACCTCAGGCGAGTGGAT 60.036 55.0 0.0 0.0 37.59 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1846 3006 0.031449 GCGGCTTGTGGTTTTAGCAA 59.969 50.0 0.00 0.00 36.64 3.91 R
1945 3111 0.096628 CTGAAGCTCGCAGCACATTC 59.903 55.0 10.16 6.38 45.56 2.67 R
3385 5141 0.531090 TACACCGAGCGCTTTTGTGT 60.531 50.0 30.13 30.13 42.38 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.756117 CCAGAAAGGAACTAAACTGGCT 58.244 45.455 0.00 0.00 42.42 4.75
25 26 4.145052 CCAGAAAGGAACTAAACTGGCTT 58.855 43.478 0.00 0.00 42.42 4.35
26 27 4.022849 CCAGAAAGGAACTAAACTGGCTTG 60.023 45.833 0.00 0.00 42.42 4.01
27 28 3.570125 AGAAAGGAACTAAACTGGCTTGC 59.430 43.478 0.00 0.00 38.49 4.01
28 29 1.911057 AGGAACTAAACTGGCTTGCC 58.089 50.000 4.43 4.43 36.02 4.52
29 30 1.425448 AGGAACTAAACTGGCTTGCCT 59.575 47.619 13.18 0.00 36.02 4.75
30 31 1.541588 GGAACTAAACTGGCTTGCCTG 59.458 52.381 15.42 15.42 0.00 4.85
31 32 1.541588 GAACTAAACTGGCTTGCCTGG 59.458 52.381 19.87 12.00 0.00 4.45
32 33 0.771127 ACTAAACTGGCTTGCCTGGA 59.229 50.000 19.87 6.66 0.00 3.86
33 34 1.144913 ACTAAACTGGCTTGCCTGGAA 59.855 47.619 19.87 6.54 0.00 3.53
34 35 2.238521 CTAAACTGGCTTGCCTGGAAA 58.761 47.619 19.87 0.00 0.00 3.13
35 36 1.043022 AAACTGGCTTGCCTGGAAAG 58.957 50.000 19.87 10.30 0.00 2.62
36 37 0.185901 AACTGGCTTGCCTGGAAAGA 59.814 50.000 19.00 0.00 0.00 2.52
37 38 0.185901 ACTGGCTTGCCTGGAAAGAA 59.814 50.000 19.00 4.43 0.00 2.52
38 39 1.203100 ACTGGCTTGCCTGGAAAGAAT 60.203 47.619 19.00 0.00 0.00 2.40
39 40 1.203994 CTGGCTTGCCTGGAAAGAATG 59.796 52.381 19.00 2.88 0.00 2.67
40 41 0.533951 GGCTTGCCTGGAAAGAATGG 59.466 55.000 19.00 0.00 0.00 3.16
41 42 1.549203 GCTTGCCTGGAAAGAATGGA 58.451 50.000 19.00 0.00 0.00 3.41
42 43 2.105766 GCTTGCCTGGAAAGAATGGAT 58.894 47.619 19.00 0.00 0.00 3.41
43 44 2.498885 GCTTGCCTGGAAAGAATGGATT 59.501 45.455 19.00 0.00 0.00 3.01
44 45 3.677976 GCTTGCCTGGAAAGAATGGATTG 60.678 47.826 19.00 0.00 0.00 2.67
45 46 1.826720 TGCCTGGAAAGAATGGATTGC 59.173 47.619 0.00 0.00 0.00 3.56
46 47 1.202336 GCCTGGAAAGAATGGATTGCG 60.202 52.381 0.00 0.00 0.00 4.85
47 48 2.368439 CCTGGAAAGAATGGATTGCGA 58.632 47.619 0.00 0.00 0.00 5.10
48 49 2.098117 CCTGGAAAGAATGGATTGCGAC 59.902 50.000 0.00 0.00 0.00 5.19
49 50 2.091541 TGGAAAGAATGGATTGCGACC 58.908 47.619 0.00 0.00 0.00 4.79
50 51 1.405463 GGAAAGAATGGATTGCGACCC 59.595 52.381 0.00 0.00 0.00 4.46
51 52 2.369394 GAAAGAATGGATTGCGACCCT 58.631 47.619 0.00 0.00 0.00 4.34
52 53 2.514458 AAGAATGGATTGCGACCCTT 57.486 45.000 0.00 0.00 0.00 3.95
53 54 1.755179 AGAATGGATTGCGACCCTTG 58.245 50.000 0.00 0.00 0.00 3.61
54 55 1.281867 AGAATGGATTGCGACCCTTGA 59.718 47.619 0.00 0.00 0.00 3.02
55 56 2.091541 GAATGGATTGCGACCCTTGAA 58.908 47.619 0.00 0.00 0.00 2.69
56 57 1.755179 ATGGATTGCGACCCTTGAAG 58.245 50.000 0.00 0.00 0.00 3.02
57 58 0.690192 TGGATTGCGACCCTTGAAGA 59.310 50.000 0.00 0.00 0.00 2.87
58 59 1.339055 TGGATTGCGACCCTTGAAGAG 60.339 52.381 0.00 0.00 0.00 2.85
59 60 0.729690 GATTGCGACCCTTGAAGAGC 59.270 55.000 0.00 0.00 0.00 4.09
60 61 0.326264 ATTGCGACCCTTGAAGAGCT 59.674 50.000 0.00 0.00 0.00 4.09
61 62 0.973632 TTGCGACCCTTGAAGAGCTA 59.026 50.000 0.00 0.00 0.00 3.32
62 63 0.973632 TGCGACCCTTGAAGAGCTAA 59.026 50.000 0.00 0.00 0.00 3.09
63 64 1.555075 TGCGACCCTTGAAGAGCTAAT 59.445 47.619 0.00 0.00 0.00 1.73
64 65 1.936547 GCGACCCTTGAAGAGCTAATG 59.063 52.381 0.00 0.00 0.00 1.90
65 66 2.555199 CGACCCTTGAAGAGCTAATGG 58.445 52.381 0.00 0.00 0.00 3.16
66 67 2.093447 CGACCCTTGAAGAGCTAATGGT 60.093 50.000 0.00 0.00 0.00 3.55
67 68 3.132289 CGACCCTTGAAGAGCTAATGGTA 59.868 47.826 0.00 0.00 0.00 3.25
68 69 4.443621 GACCCTTGAAGAGCTAATGGTAC 58.556 47.826 0.00 0.00 0.00 3.34
69 70 4.104831 ACCCTTGAAGAGCTAATGGTACT 58.895 43.478 0.00 0.00 0.00 2.73
70 71 4.080863 ACCCTTGAAGAGCTAATGGTACTG 60.081 45.833 0.00 0.00 0.00 2.74
71 72 4.446371 CCTTGAAGAGCTAATGGTACTGG 58.554 47.826 0.00 0.00 0.00 4.00
72 73 4.162320 CCTTGAAGAGCTAATGGTACTGGA 59.838 45.833 0.00 0.00 0.00 3.86
73 74 4.737855 TGAAGAGCTAATGGTACTGGAC 57.262 45.455 0.00 0.00 0.00 4.02
74 75 4.353777 TGAAGAGCTAATGGTACTGGACT 58.646 43.478 0.00 0.00 0.00 3.85
75 76 4.160439 TGAAGAGCTAATGGTACTGGACTG 59.840 45.833 0.00 0.00 0.00 3.51
76 77 3.982516 AGAGCTAATGGTACTGGACTGA 58.017 45.455 0.00 0.00 0.00 3.41
77 78 4.551671 AGAGCTAATGGTACTGGACTGAT 58.448 43.478 0.00 0.00 0.00 2.90
78 79 5.706447 AGAGCTAATGGTACTGGACTGATA 58.294 41.667 0.00 0.00 0.00 2.15
79 80 5.772672 AGAGCTAATGGTACTGGACTGATAG 59.227 44.000 0.00 0.00 0.00 2.08
80 81 4.282195 AGCTAATGGTACTGGACTGATAGC 59.718 45.833 11.13 11.13 34.87 2.97
81 82 3.735237 AATGGTACTGGACTGATAGCG 57.265 47.619 0.00 0.00 0.00 4.26
82 83 0.744874 TGGTACTGGACTGATAGCGC 59.255 55.000 0.00 0.00 0.00 5.92
83 84 0.744874 GGTACTGGACTGATAGCGCA 59.255 55.000 11.47 0.00 0.00 6.09
84 85 1.536284 GGTACTGGACTGATAGCGCAC 60.536 57.143 11.47 0.51 0.00 5.34
85 86 1.405821 GTACTGGACTGATAGCGCACT 59.594 52.381 11.47 0.00 0.00 4.40
86 87 0.174389 ACTGGACTGATAGCGCACTG 59.826 55.000 11.47 7.36 0.00 3.66
87 88 0.457443 CTGGACTGATAGCGCACTGA 59.543 55.000 11.47 0.00 0.00 3.41
88 89 1.068281 CTGGACTGATAGCGCACTGAT 59.932 52.381 11.47 0.00 0.00 2.90
89 90 1.482182 TGGACTGATAGCGCACTGATT 59.518 47.619 11.47 0.00 0.00 2.57
90 91 1.863454 GGACTGATAGCGCACTGATTG 59.137 52.381 11.47 0.00 0.00 2.67
91 92 2.481969 GGACTGATAGCGCACTGATTGA 60.482 50.000 11.47 0.00 0.00 2.57
92 93 3.190079 GACTGATAGCGCACTGATTGAA 58.810 45.455 11.47 0.00 0.00 2.69
93 94 3.801698 ACTGATAGCGCACTGATTGAAT 58.198 40.909 11.47 0.00 0.00 2.57
94 95 3.806521 ACTGATAGCGCACTGATTGAATC 59.193 43.478 11.47 0.00 0.00 2.52
95 96 2.796593 TGATAGCGCACTGATTGAATCG 59.203 45.455 11.47 0.00 0.00 3.34
96 97 2.577449 TAGCGCACTGATTGAATCGA 57.423 45.000 11.47 0.00 0.00 3.59
97 98 1.002366 AGCGCACTGATTGAATCGAC 58.998 50.000 11.47 0.00 0.00 4.20
98 99 0.026803 GCGCACTGATTGAATCGACC 59.973 55.000 0.30 0.00 0.00 4.79
99 100 0.652592 CGCACTGATTGAATCGACCC 59.347 55.000 0.18 0.00 0.00 4.46
100 101 1.017387 GCACTGATTGAATCGACCCC 58.983 55.000 0.18 0.00 0.00 4.95
101 102 1.290203 CACTGATTGAATCGACCCCG 58.710 55.000 0.18 0.00 37.07 5.73
102 103 0.178068 ACTGATTGAATCGACCCCGG 59.822 55.000 0.00 0.00 36.24 5.73
103 104 0.464036 CTGATTGAATCGACCCCGGA 59.536 55.000 0.73 0.00 36.24 5.14
104 105 0.177141 TGATTGAATCGACCCCGGAC 59.823 55.000 0.73 0.00 36.24 4.79
105 106 0.874607 GATTGAATCGACCCCGGACG 60.875 60.000 0.73 6.13 36.24 4.79
106 107 1.610554 ATTGAATCGACCCCGGACGT 61.611 55.000 0.73 0.00 35.12 4.34
107 108 0.964860 TTGAATCGACCCCGGACGTA 60.965 55.000 0.73 0.00 35.12 3.57
108 109 1.064783 GAATCGACCCCGGACGTAC 59.935 63.158 0.73 0.00 35.12 3.67
109 110 2.341807 GAATCGACCCCGGACGTACC 62.342 65.000 0.73 0.00 35.12 3.34
110 111 3.643595 ATCGACCCCGGACGTACCA 62.644 63.158 0.73 0.00 38.90 3.25
111 112 4.120331 CGACCCCGGACGTACCAC 62.120 72.222 0.73 0.00 38.90 4.16
112 113 3.763356 GACCCCGGACGTACCACC 61.763 72.222 0.73 0.00 38.90 4.61
118 119 2.996734 GGACGTACCACCGGGGAA 60.997 66.667 4.41 0.00 41.15 3.97
119 120 2.262603 GACGTACCACCGGGGAAC 59.737 66.667 4.41 1.22 41.15 3.62
132 133 3.483587 GGAACCTGTGCCTGGAGA 58.516 61.111 0.00 0.00 0.00 3.71
133 134 1.298014 GGAACCTGTGCCTGGAGAG 59.702 63.158 0.00 0.00 0.00 3.20
134 135 1.194781 GGAACCTGTGCCTGGAGAGA 61.195 60.000 0.00 0.00 0.00 3.10
135 136 0.687354 GAACCTGTGCCTGGAGAGAA 59.313 55.000 0.00 0.00 0.00 2.87
136 137 1.280421 GAACCTGTGCCTGGAGAGAAT 59.720 52.381 0.00 0.00 0.00 2.40
137 138 0.908198 ACCTGTGCCTGGAGAGAATC 59.092 55.000 0.00 0.00 0.00 2.52
148 149 4.626225 GAGAATCTCTCGCTCCGC 57.374 61.111 2.45 0.00 33.35 5.54
149 150 1.730487 GAGAATCTCTCGCTCCGCA 59.270 57.895 2.45 0.00 33.35 5.69
150 151 0.317770 GAGAATCTCTCGCTCCGCAG 60.318 60.000 2.45 0.00 33.35 5.18
151 152 1.948635 GAATCTCTCGCTCCGCAGC 60.949 63.158 0.00 0.00 42.96 5.25
152 153 2.348605 GAATCTCTCGCTCCGCAGCT 62.349 60.000 0.00 0.00 44.40 4.24
153 154 2.348605 AATCTCTCGCTCCGCAGCTC 62.349 60.000 0.00 0.00 44.40 4.09
154 155 4.903355 CTCTCGCTCCGCAGCTCG 62.903 72.222 0.00 0.00 44.40 5.03
163 164 4.441695 CGCAGCTCGCCCAGAAGA 62.442 66.667 3.09 0.00 37.30 2.87
164 165 2.046892 GCAGCTCGCCCAGAAGAA 60.047 61.111 0.00 0.00 32.94 2.52
165 166 2.105466 GCAGCTCGCCCAGAAGAAG 61.105 63.158 0.00 0.00 32.94 2.85
166 167 1.593787 CAGCTCGCCCAGAAGAAGA 59.406 57.895 0.00 0.00 0.00 2.87
167 168 0.036952 CAGCTCGCCCAGAAGAAGAA 60.037 55.000 0.00 0.00 0.00 2.52
168 169 0.687354 AGCTCGCCCAGAAGAAGAAA 59.313 50.000 0.00 0.00 0.00 2.52
169 170 1.082690 GCTCGCCCAGAAGAAGAAAG 58.917 55.000 0.00 0.00 0.00 2.62
170 171 1.338200 GCTCGCCCAGAAGAAGAAAGA 60.338 52.381 0.00 0.00 0.00 2.52
171 172 2.342179 CTCGCCCAGAAGAAGAAAGAC 58.658 52.381 0.00 0.00 0.00 3.01
172 173 1.002087 TCGCCCAGAAGAAGAAAGACC 59.998 52.381 0.00 0.00 0.00 3.85
173 174 1.827681 GCCCAGAAGAAGAAAGACCC 58.172 55.000 0.00 0.00 0.00 4.46
174 175 1.946283 GCCCAGAAGAAGAAAGACCCG 60.946 57.143 0.00 0.00 0.00 5.28
175 176 1.443802 CCAGAAGAAGAAAGACCCGC 58.556 55.000 0.00 0.00 0.00 6.13
176 177 1.443802 CAGAAGAAGAAAGACCCGCC 58.556 55.000 0.00 0.00 0.00 6.13
177 178 0.037232 AGAAGAAGAAAGACCCGCCG 60.037 55.000 0.00 0.00 0.00 6.46
178 179 1.636570 GAAGAAGAAAGACCCGCCGC 61.637 60.000 0.00 0.00 0.00 6.53
179 180 2.047179 GAAGAAAGACCCGCCGCT 60.047 61.111 0.00 0.00 0.00 5.52
180 181 1.217244 GAAGAAAGACCCGCCGCTA 59.783 57.895 0.00 0.00 0.00 4.26
181 182 0.390735 GAAGAAAGACCCGCCGCTAA 60.391 55.000 0.00 0.00 0.00 3.09
182 183 0.672711 AAGAAAGACCCGCCGCTAAC 60.673 55.000 0.00 0.00 0.00 2.34
183 184 2.433664 AAAGACCCGCCGCTAACG 60.434 61.111 0.00 0.00 39.67 3.18
184 185 2.824071 GAAAGACCCGCCGCTAACGA 62.824 60.000 0.00 0.00 43.93 3.85
185 186 2.438951 AAAGACCCGCCGCTAACGAA 62.439 55.000 0.00 0.00 43.93 3.85
186 187 2.432972 GACCCGCCGCTAACGAAA 60.433 61.111 0.00 0.00 43.93 3.46
187 188 1.812507 GACCCGCCGCTAACGAAAT 60.813 57.895 0.00 0.00 43.93 2.17
188 189 1.759293 GACCCGCCGCTAACGAAATC 61.759 60.000 0.00 0.00 43.93 2.17
189 190 2.531376 CCCGCCGCTAACGAAATCC 61.531 63.158 0.00 0.00 43.93 3.01
190 191 2.618839 CGCCGCTAACGAAATCCG 59.381 61.111 0.00 0.00 43.93 4.18
191 192 2.867091 CGCCGCTAACGAAATCCGG 61.867 63.158 0.00 0.00 43.93 5.14
192 193 1.812507 GCCGCTAACGAAATCCGGT 60.813 57.895 0.00 0.00 43.93 5.28
193 194 1.759293 GCCGCTAACGAAATCCGGTC 61.759 60.000 0.00 0.00 43.93 4.79
194 195 0.179119 CCGCTAACGAAATCCGGTCT 60.179 55.000 0.00 0.00 43.93 3.85
195 196 1.636988 CGCTAACGAAATCCGGTCTT 58.363 50.000 0.00 0.00 43.93 3.01
196 197 1.997606 CGCTAACGAAATCCGGTCTTT 59.002 47.619 0.00 2.54 43.93 2.52
197 198 2.028883 CGCTAACGAAATCCGGTCTTTC 59.971 50.000 17.09 17.09 43.93 2.62
198 199 2.997986 GCTAACGAAATCCGGTCTTTCA 59.002 45.455 22.88 9.99 43.93 2.69
199 200 3.621715 GCTAACGAAATCCGGTCTTTCAT 59.378 43.478 22.88 16.38 43.93 2.57
200 201 4.494199 GCTAACGAAATCCGGTCTTTCATG 60.494 45.833 22.88 14.47 43.93 3.07
201 202 1.737793 ACGAAATCCGGTCTTTCATGC 59.262 47.619 22.88 6.09 43.93 4.06
202 203 1.737236 CGAAATCCGGTCTTTCATGCA 59.263 47.619 22.88 0.00 33.20 3.96
203 204 2.161410 CGAAATCCGGTCTTTCATGCAA 59.839 45.455 22.88 0.00 33.20 4.08
204 205 3.728864 CGAAATCCGGTCTTTCATGCAAG 60.729 47.826 22.88 0.00 33.20 4.01
205 206 2.787473 ATCCGGTCTTTCATGCAAGA 57.213 45.000 3.48 3.48 0.00 3.02
206 207 2.099141 TCCGGTCTTTCATGCAAGAG 57.901 50.000 8.12 0.00 33.29 2.85
207 208 1.347707 TCCGGTCTTTCATGCAAGAGT 59.652 47.619 8.12 0.00 33.29 3.24
208 209 2.154462 CCGGTCTTTCATGCAAGAGTT 58.846 47.619 8.12 0.00 33.29 3.01
209 210 2.554032 CCGGTCTTTCATGCAAGAGTTT 59.446 45.455 8.12 0.00 33.29 2.66
210 211 3.365364 CCGGTCTTTCATGCAAGAGTTTC 60.365 47.826 8.12 0.00 33.29 2.78
211 212 3.250762 CGGTCTTTCATGCAAGAGTTTCA 59.749 43.478 8.12 0.00 33.29 2.69
212 213 4.083110 CGGTCTTTCATGCAAGAGTTTCAT 60.083 41.667 8.12 0.00 33.29 2.57
213 214 5.563475 CGGTCTTTCATGCAAGAGTTTCATT 60.563 40.000 8.12 0.00 33.29 2.57
214 215 6.218746 GGTCTTTCATGCAAGAGTTTCATTT 58.781 36.000 8.12 0.00 33.29 2.32
215 216 6.703165 GGTCTTTCATGCAAGAGTTTCATTTT 59.297 34.615 8.12 0.00 33.29 1.82
216 217 7.225341 GGTCTTTCATGCAAGAGTTTCATTTTT 59.775 33.333 8.12 0.00 33.29 1.94
217 218 8.060090 GTCTTTCATGCAAGAGTTTCATTTTTG 58.940 33.333 8.12 0.00 33.29 2.44
218 219 6.847956 TTCATGCAAGAGTTTCATTTTTGG 57.152 33.333 0.00 0.00 0.00 3.28
219 220 4.751098 TCATGCAAGAGTTTCATTTTTGGC 59.249 37.500 0.00 0.00 0.00 4.52
220 221 3.465871 TGCAAGAGTTTCATTTTTGGCC 58.534 40.909 0.00 0.00 0.00 5.36
221 222 2.476241 GCAAGAGTTTCATTTTTGGCCG 59.524 45.455 0.00 0.00 0.00 6.13
222 223 2.438868 AGAGTTTCATTTTTGGCCGC 57.561 45.000 0.00 0.00 0.00 6.53
223 224 1.963515 AGAGTTTCATTTTTGGCCGCT 59.036 42.857 0.00 0.00 0.00 5.52
224 225 3.153919 AGAGTTTCATTTTTGGCCGCTA 58.846 40.909 0.00 0.00 0.00 4.26
225 226 3.057526 AGAGTTTCATTTTTGGCCGCTAC 60.058 43.478 0.00 0.00 0.00 3.58
226 227 2.890945 AGTTTCATTTTTGGCCGCTACT 59.109 40.909 0.00 0.00 0.00 2.57
227 228 4.076394 AGTTTCATTTTTGGCCGCTACTA 58.924 39.130 0.00 0.00 0.00 1.82
228 229 4.082949 AGTTTCATTTTTGGCCGCTACTAC 60.083 41.667 0.00 0.00 0.00 2.73
229 230 2.004017 TCATTTTTGGCCGCTACTACG 58.996 47.619 0.00 0.00 0.00 3.51
230 231 1.735571 CATTTTTGGCCGCTACTACGT 59.264 47.619 0.00 0.00 0.00 3.57
231 232 1.881591 TTTTTGGCCGCTACTACGTT 58.118 45.000 0.00 0.00 0.00 3.99
232 233 1.431496 TTTTGGCCGCTACTACGTTC 58.569 50.000 0.00 0.00 0.00 3.95
233 234 0.733566 TTTGGCCGCTACTACGTTCG 60.734 55.000 0.00 0.00 0.00 3.95
234 235 1.865788 TTGGCCGCTACTACGTTCGT 61.866 55.000 0.00 2.91 0.00 3.85
235 236 1.584742 GGCCGCTACTACGTTCGTC 60.585 63.158 0.00 0.00 0.00 4.20
236 237 1.931612 GCCGCTACTACGTTCGTCG 60.932 63.158 0.00 0.00 46.00 5.12
237 238 1.709760 CCGCTACTACGTTCGTCGA 59.290 57.895 0.00 0.00 42.86 4.20
238 239 0.095245 CCGCTACTACGTTCGTCGAA 59.905 55.000 2.90 2.90 42.86 3.71
239 240 1.464023 CCGCTACTACGTTCGTCGAAA 60.464 52.381 9.70 0.00 42.86 3.46
240 241 2.233355 CGCTACTACGTTCGTCGAAAA 58.767 47.619 9.70 0.00 42.86 2.29
241 242 2.024528 CGCTACTACGTTCGTCGAAAAC 59.975 50.000 9.70 0.00 42.86 2.43
242 243 3.229552 GCTACTACGTTCGTCGAAAACT 58.770 45.455 9.70 0.00 42.86 2.66
243 244 3.665871 GCTACTACGTTCGTCGAAAACTT 59.334 43.478 9.70 0.00 42.86 2.66
244 245 4.201344 GCTACTACGTTCGTCGAAAACTTC 60.201 45.833 9.70 0.00 42.86 3.01
245 246 3.957468 ACTACGTTCGTCGAAAACTTCT 58.043 40.909 9.70 0.00 42.86 2.85
246 247 4.354587 ACTACGTTCGTCGAAAACTTCTT 58.645 39.130 9.70 0.00 42.86 2.52
247 248 3.564408 ACGTTCGTCGAAAACTTCTTG 57.436 42.857 9.70 0.00 42.86 3.02
248 249 3.181397 ACGTTCGTCGAAAACTTCTTGA 58.819 40.909 9.70 0.00 42.86 3.02
249 250 3.800506 ACGTTCGTCGAAAACTTCTTGAT 59.199 39.130 9.70 0.00 42.86 2.57
250 251 4.134546 CGTTCGTCGAAAACTTCTTGATG 58.865 43.478 9.70 0.00 42.86 3.07
251 252 4.455124 GTTCGTCGAAAACTTCTTGATGG 58.545 43.478 9.70 0.00 0.00 3.51
252 253 2.478894 TCGTCGAAAACTTCTTGATGGC 59.521 45.455 0.00 0.00 0.00 4.40
253 254 2.223144 CGTCGAAAACTTCTTGATGGCA 59.777 45.455 0.00 0.00 0.00 4.92
254 255 3.555518 GTCGAAAACTTCTTGATGGCAC 58.444 45.455 0.00 0.00 0.00 5.01
255 256 2.552315 TCGAAAACTTCTTGATGGCACC 59.448 45.455 0.00 0.00 0.00 5.01
256 257 2.293122 CGAAAACTTCTTGATGGCACCA 59.707 45.455 0.00 0.00 0.00 4.17
257 258 3.057315 CGAAAACTTCTTGATGGCACCAT 60.057 43.478 0.66 0.66 39.69 3.55
269 270 3.213206 TGGCACCATCATCTCATTACC 57.787 47.619 0.00 0.00 0.00 2.85
270 271 2.779430 TGGCACCATCATCTCATTACCT 59.221 45.455 0.00 0.00 0.00 3.08
271 272 3.202818 TGGCACCATCATCTCATTACCTT 59.797 43.478 0.00 0.00 0.00 3.50
272 273 4.411869 TGGCACCATCATCTCATTACCTTA 59.588 41.667 0.00 0.00 0.00 2.69
273 274 5.073554 TGGCACCATCATCTCATTACCTTAT 59.926 40.000 0.00 0.00 0.00 1.73
274 275 6.006449 GGCACCATCATCTCATTACCTTATT 58.994 40.000 0.00 0.00 0.00 1.40
275 276 6.491403 GGCACCATCATCTCATTACCTTATTT 59.509 38.462 0.00 0.00 0.00 1.40
276 277 7.014615 GGCACCATCATCTCATTACCTTATTTT 59.985 37.037 0.00 0.00 0.00 1.82
277 278 8.416329 GCACCATCATCTCATTACCTTATTTTT 58.584 33.333 0.00 0.00 0.00 1.94
294 295 1.232119 TTTTTCCCTTCGACTTCGGC 58.768 50.000 0.00 0.00 40.29 5.54
295 296 0.395312 TTTTCCCTTCGACTTCGGCT 59.605 50.000 0.00 0.00 40.29 5.52
296 297 1.259609 TTTCCCTTCGACTTCGGCTA 58.740 50.000 0.00 0.00 40.29 3.93
297 298 1.481871 TTCCCTTCGACTTCGGCTAT 58.518 50.000 0.00 0.00 40.29 2.97
298 299 0.744874 TCCCTTCGACTTCGGCTATG 59.255 55.000 0.00 0.00 40.29 2.23
299 300 0.744874 CCCTTCGACTTCGGCTATGA 59.255 55.000 0.00 0.00 40.29 2.15
300 301 1.536284 CCCTTCGACTTCGGCTATGAC 60.536 57.143 0.00 0.00 40.29 3.06
301 302 1.536284 CCTTCGACTTCGGCTATGACC 60.536 57.143 0.00 0.00 40.29 4.02
302 303 1.134367 CTTCGACTTCGGCTATGACCA 59.866 52.381 0.00 0.00 40.29 4.02
303 304 1.179152 TCGACTTCGGCTATGACCAA 58.821 50.000 0.00 0.00 40.29 3.67
304 305 1.754803 TCGACTTCGGCTATGACCAAT 59.245 47.619 0.00 0.00 40.29 3.16
305 306 1.860950 CGACTTCGGCTATGACCAATG 59.139 52.381 0.00 0.00 35.37 2.82
306 307 1.599542 GACTTCGGCTATGACCAATGC 59.400 52.381 0.00 0.00 0.00 3.56
307 308 0.947244 CTTCGGCTATGACCAATGCC 59.053 55.000 0.00 0.00 41.76 4.40
308 309 0.465460 TTCGGCTATGACCAATGCCC 60.465 55.000 9.77 0.00 42.15 5.36
309 310 1.898574 CGGCTATGACCAATGCCCC 60.899 63.158 9.77 0.00 42.15 5.80
310 311 1.229927 GGCTATGACCAATGCCCCA 59.770 57.895 0.00 0.00 39.49 4.96
311 312 1.109323 GGCTATGACCAATGCCCCAC 61.109 60.000 0.00 0.00 39.49 4.61
312 313 1.109323 GCTATGACCAATGCCCCACC 61.109 60.000 0.00 0.00 0.00 4.61
313 314 0.552848 CTATGACCAATGCCCCACCT 59.447 55.000 0.00 0.00 0.00 4.00
314 315 1.774254 CTATGACCAATGCCCCACCTA 59.226 52.381 0.00 0.00 0.00 3.08
315 316 0.552848 ATGACCAATGCCCCACCTAG 59.447 55.000 0.00 0.00 0.00 3.02
316 317 1.453928 GACCAATGCCCCACCTAGC 60.454 63.158 0.00 0.00 0.00 3.42
317 318 1.926426 GACCAATGCCCCACCTAGCT 61.926 60.000 0.00 0.00 0.00 3.32
318 319 1.454479 CCAATGCCCCACCTAGCTG 60.454 63.158 0.00 0.00 0.00 4.24
319 320 1.609239 CAATGCCCCACCTAGCTGA 59.391 57.895 0.00 0.00 0.00 4.26
320 321 0.034186 CAATGCCCCACCTAGCTGAA 60.034 55.000 0.00 0.00 0.00 3.02
321 322 0.929244 AATGCCCCACCTAGCTGAAT 59.071 50.000 0.00 0.00 0.00 2.57
322 323 1.819753 ATGCCCCACCTAGCTGAATA 58.180 50.000 0.00 0.00 0.00 1.75
323 324 1.131638 TGCCCCACCTAGCTGAATAG 58.868 55.000 0.00 0.00 0.00 1.73
324 325 0.398318 GCCCCACCTAGCTGAATAGG 59.602 60.000 0.00 0.00 46.70 2.57
325 326 0.398318 CCCCACCTAGCTGAATAGGC 59.602 60.000 0.00 0.00 45.43 3.93
326 327 0.034059 CCCACCTAGCTGAATAGGCG 59.966 60.000 0.00 0.00 45.43 5.52
327 328 0.753262 CCACCTAGCTGAATAGGCGT 59.247 55.000 0.00 0.00 45.43 5.68
328 329 1.961394 CCACCTAGCTGAATAGGCGTA 59.039 52.381 0.00 0.00 45.43 4.42
329 330 2.364324 CCACCTAGCTGAATAGGCGTAA 59.636 50.000 0.00 0.00 45.43 3.18
330 331 3.381949 CACCTAGCTGAATAGGCGTAAC 58.618 50.000 0.00 0.00 45.43 2.50
331 332 3.028850 ACCTAGCTGAATAGGCGTAACA 58.971 45.455 0.00 0.00 45.43 2.41
332 333 3.449737 ACCTAGCTGAATAGGCGTAACAA 59.550 43.478 0.00 0.00 45.43 2.83
333 334 4.081309 ACCTAGCTGAATAGGCGTAACAAA 60.081 41.667 0.00 0.00 45.43 2.83
334 335 4.508124 CCTAGCTGAATAGGCGTAACAAAG 59.492 45.833 0.00 0.00 36.16 2.77
335 336 2.678336 AGCTGAATAGGCGTAACAAAGC 59.322 45.455 0.00 0.00 34.52 3.51
336 337 2.678336 GCTGAATAGGCGTAACAAAGCT 59.322 45.455 0.00 0.00 0.00 3.74
337 338 3.869246 GCTGAATAGGCGTAACAAAGCTA 59.131 43.478 0.00 0.00 0.00 3.32
338 339 4.260253 GCTGAATAGGCGTAACAAAGCTAC 60.260 45.833 0.00 0.00 0.00 3.58
339 340 4.186159 TGAATAGGCGTAACAAAGCTACC 58.814 43.478 0.00 0.00 0.00 3.18
340 341 4.081309 TGAATAGGCGTAACAAAGCTACCT 60.081 41.667 0.00 0.00 0.00 3.08
341 342 2.094762 AGGCGTAACAAAGCTACCTG 57.905 50.000 0.00 0.00 0.00 4.00
342 343 1.621814 AGGCGTAACAAAGCTACCTGA 59.378 47.619 0.00 0.00 0.00 3.86
343 344 2.038033 AGGCGTAACAAAGCTACCTGAA 59.962 45.455 0.00 0.00 0.00 3.02
344 345 2.809696 GGCGTAACAAAGCTACCTGAAA 59.190 45.455 0.00 0.00 0.00 2.69
345 346 3.251487 GGCGTAACAAAGCTACCTGAAAA 59.749 43.478 0.00 0.00 0.00 2.29
346 347 4.261280 GGCGTAACAAAGCTACCTGAAAAA 60.261 41.667 0.00 0.00 0.00 1.94
347 348 4.909880 GCGTAACAAAGCTACCTGAAAAAG 59.090 41.667 0.00 0.00 0.00 2.27
356 357 3.593834 CCTGAAAAAGGCAAGGTGC 57.406 52.632 0.00 0.00 44.08 5.01
373 374 3.941483 AGGTGCACCTTAGATTGAAATCG 59.059 43.478 33.20 0.00 46.09 3.34
374 375 3.938963 GGTGCACCTTAGATTGAAATCGA 59.061 43.478 29.12 0.00 40.35 3.59
375 376 4.201822 GGTGCACCTTAGATTGAAATCGAC 60.202 45.833 29.12 0.00 40.35 4.20
376 377 4.391830 GTGCACCTTAGATTGAAATCGACA 59.608 41.667 5.22 0.00 40.35 4.35
377 378 5.000591 TGCACCTTAGATTGAAATCGACAA 58.999 37.500 0.00 0.00 40.35 3.18
378 379 5.471797 TGCACCTTAGATTGAAATCGACAAA 59.528 36.000 0.00 0.00 40.35 2.83
379 380 6.150976 TGCACCTTAGATTGAAATCGACAAAT 59.849 34.615 0.00 0.00 40.35 2.32
380 381 7.029563 GCACCTTAGATTGAAATCGACAAATT 58.970 34.615 0.00 0.00 40.35 1.82
381 382 7.008628 GCACCTTAGATTGAAATCGACAAATTG 59.991 37.037 0.00 0.00 40.35 2.32
382 383 7.008628 CACCTTAGATTGAAATCGACAAATTGC 59.991 37.037 0.00 0.00 40.35 3.56
383 384 6.195244 CCTTAGATTGAAATCGACAAATTGCG 59.805 38.462 0.00 0.00 40.35 4.85
384 385 5.046910 AGATTGAAATCGACAAATTGCGT 57.953 34.783 8.95 0.00 40.35 5.24
385 386 5.460646 AGATTGAAATCGACAAATTGCGTT 58.539 33.333 8.95 0.34 40.35 4.84
386 387 5.920273 AGATTGAAATCGACAAATTGCGTTT 59.080 32.000 8.95 8.74 40.35 3.60
387 388 5.957910 TTGAAATCGACAAATTGCGTTTT 57.042 30.435 13.96 13.96 33.63 2.43
388 389 5.308290 TGAAATCGACAAATTGCGTTTTG 57.692 34.783 16.86 9.02 41.37 2.44
389 390 3.769009 AATCGACAAATTGCGTTTTGC 57.231 38.095 10.19 4.23 46.70 3.68
390 391 1.482278 TCGACAAATTGCGTTTTGCC 58.518 45.000 10.19 0.40 45.60 4.52
391 392 1.202302 TCGACAAATTGCGTTTTGCCA 60.202 42.857 10.19 0.00 45.60 4.92
392 393 1.189884 CGACAAATTGCGTTTTGCCAG 59.810 47.619 10.19 0.84 45.60 4.85
393 394 2.468831 GACAAATTGCGTTTTGCCAGA 58.531 42.857 10.19 0.00 45.60 3.86
394 395 3.059166 GACAAATTGCGTTTTGCCAGAT 58.941 40.909 10.19 0.00 45.60 2.90
395 396 2.801679 ACAAATTGCGTTTTGCCAGATG 59.198 40.909 10.19 0.00 45.60 2.90
396 397 2.083167 AATTGCGTTTTGCCAGATGG 57.917 45.000 0.00 0.00 45.60 3.51
397 398 1.255882 ATTGCGTTTTGCCAGATGGA 58.744 45.000 2.18 0.00 45.60 3.41
398 399 1.255882 TTGCGTTTTGCCAGATGGAT 58.744 45.000 2.18 0.00 45.60 3.41
399 400 1.255882 TGCGTTTTGCCAGATGGATT 58.744 45.000 2.18 0.00 45.60 3.01
400 401 1.202114 TGCGTTTTGCCAGATGGATTC 59.798 47.619 2.18 0.00 45.60 2.52
401 402 1.474077 GCGTTTTGCCAGATGGATTCT 59.526 47.619 2.18 0.00 37.76 2.40
402 403 2.094545 GCGTTTTGCCAGATGGATTCTT 60.095 45.455 2.18 0.00 37.76 2.52
403 404 3.614870 GCGTTTTGCCAGATGGATTCTTT 60.615 43.478 2.18 0.00 37.76 2.52
404 405 4.380444 GCGTTTTGCCAGATGGATTCTTTA 60.380 41.667 2.18 0.00 37.76 1.85
405 406 5.335127 CGTTTTGCCAGATGGATTCTTTAG 58.665 41.667 2.18 0.00 37.39 1.85
406 407 5.123820 CGTTTTGCCAGATGGATTCTTTAGA 59.876 40.000 2.18 0.00 37.39 2.10
407 408 6.349280 CGTTTTGCCAGATGGATTCTTTAGAA 60.349 38.462 2.18 0.00 37.39 2.10
408 409 7.378181 GTTTTGCCAGATGGATTCTTTAGAAA 58.622 34.615 2.18 0.00 37.39 2.52
409 410 6.764308 TTGCCAGATGGATTCTTTAGAAAG 57.236 37.500 2.18 0.00 37.39 2.62
410 411 6.065976 TGCCAGATGGATTCTTTAGAAAGA 57.934 37.500 2.18 0.46 39.30 2.52
411 412 6.666678 TGCCAGATGGATTCTTTAGAAAGAT 58.333 36.000 2.18 0.00 40.11 2.40
412 413 7.121382 TGCCAGATGGATTCTTTAGAAAGATT 58.879 34.615 2.18 2.73 40.11 2.40
413 414 7.284034 TGCCAGATGGATTCTTTAGAAAGATTC 59.716 37.037 14.40 14.40 40.11 2.52
421 422 8.904099 GATTCTTTAGAAAGATTCCCGGATAA 57.096 34.615 0.73 0.00 43.92 1.75
422 423 9.338622 GATTCTTTAGAAAGATTCCCGGATAAA 57.661 33.333 0.73 0.00 43.92 1.40
423 424 8.732746 TTCTTTAGAAAGATTCCCGGATAAAG 57.267 34.615 0.73 7.64 43.92 1.85
424 425 7.858498 TCTTTAGAAAGATTCCCGGATAAAGT 58.142 34.615 0.73 0.00 39.95 2.66
425 426 8.326529 TCTTTAGAAAGATTCCCGGATAAAGTT 58.673 33.333 0.73 0.00 39.95 2.66
426 427 8.502105 TTTAGAAAGATTCCCGGATAAAGTTC 57.498 34.615 0.73 0.00 0.00 3.01
427 428 6.062258 AGAAAGATTCCCGGATAAAGTTCA 57.938 37.500 0.73 0.00 0.00 3.18
428 429 6.116126 AGAAAGATTCCCGGATAAAGTTCAG 58.884 40.000 0.73 0.00 0.00 3.02
429 430 5.437191 AAGATTCCCGGATAAAGTTCAGT 57.563 39.130 0.73 0.00 0.00 3.41
430 431 6.555463 AAGATTCCCGGATAAAGTTCAGTA 57.445 37.500 0.73 0.00 0.00 2.74
431 432 6.749036 AGATTCCCGGATAAAGTTCAGTAT 57.251 37.500 0.73 0.00 0.00 2.12
432 433 7.850935 AGATTCCCGGATAAAGTTCAGTATA 57.149 36.000 0.73 0.00 0.00 1.47
433 434 8.258850 AGATTCCCGGATAAAGTTCAGTATAA 57.741 34.615 0.73 0.00 0.00 0.98
434 435 8.881262 AGATTCCCGGATAAAGTTCAGTATAAT 58.119 33.333 0.73 0.00 0.00 1.28
468 469 8.516811 AGAATCTAAATAAAGGCGTATACGTG 57.483 34.615 25.04 0.16 42.22 4.49
469 470 7.597743 AGAATCTAAATAAAGGCGTATACGTGG 59.402 37.037 25.04 6.25 42.22 4.94
470 471 5.531634 TCTAAATAAAGGCGTATACGTGGG 58.468 41.667 25.04 0.00 42.22 4.61
471 472 2.159327 ATAAAGGCGTATACGTGGGC 57.841 50.000 25.04 10.51 42.22 5.36
472 473 0.248990 TAAAGGCGTATACGTGGGCG 60.249 55.000 25.04 0.16 42.22 6.13
473 474 2.911332 AAAGGCGTATACGTGGGCGG 62.911 60.000 25.04 0.00 43.45 6.13
474 475 4.955774 GGCGTATACGTGGGCGGG 62.956 72.222 25.04 0.00 43.45 6.13
476 477 4.210093 CGTATACGTGGGCGGGCA 62.210 66.667 17.16 0.00 43.45 5.36
477 478 2.279918 GTATACGTGGGCGGGCAG 60.280 66.667 3.27 0.00 43.45 4.85
478 479 3.542676 TATACGTGGGCGGGCAGG 61.543 66.667 3.27 0.00 43.45 4.85
494 495 2.286197 GGGGGCCCCACTACTTCT 60.286 66.667 41.80 0.00 44.65 2.85
495 496 1.929088 GGGGGCCCCACTACTTCTT 60.929 63.158 41.80 0.00 44.65 2.52
496 497 1.608154 GGGGCCCCACTACTTCTTC 59.392 63.158 37.61 2.64 35.81 2.87
497 498 1.205460 GGGGCCCCACTACTTCTTCA 61.205 60.000 37.61 0.00 35.81 3.02
498 499 0.919710 GGGCCCCACTACTTCTTCAT 59.080 55.000 12.23 0.00 0.00 2.57
499 500 1.285078 GGGCCCCACTACTTCTTCATT 59.715 52.381 12.23 0.00 0.00 2.57
500 501 2.291605 GGGCCCCACTACTTCTTCATTT 60.292 50.000 12.23 0.00 0.00 2.32
501 502 3.053917 GGGCCCCACTACTTCTTCATTTA 60.054 47.826 12.23 0.00 0.00 1.40
502 503 4.200092 GGCCCCACTACTTCTTCATTTAG 58.800 47.826 0.00 0.00 0.00 1.85
503 504 4.200092 GCCCCACTACTTCTTCATTTAGG 58.800 47.826 0.00 0.00 0.00 2.69
504 505 4.781934 CCCCACTACTTCTTCATTTAGGG 58.218 47.826 0.00 0.00 0.00 3.53
505 506 4.385310 CCCCACTACTTCTTCATTTAGGGG 60.385 50.000 0.00 0.00 45.50 4.79
506 507 4.385310 CCCACTACTTCTTCATTTAGGGGG 60.385 50.000 0.35 0.35 46.59 5.40
575 576 6.428385 ACAGATTCAGCGGAAGAATTTTAG 57.572 37.500 5.34 0.00 35.93 1.85
590 591 9.657121 GAAGAATTTTAGCATAGCAGATTACAC 57.343 33.333 0.00 0.00 0.00 2.90
637 1661 5.047021 TCACTAGAAACAAGAGACCATCAGG 60.047 44.000 0.00 0.00 42.21 3.86
753 1843 1.484653 ACAAAACCCAGCCCAAGAAAC 59.515 47.619 0.00 0.00 0.00 2.78
905 2017 0.669619 TAAGCCACGACACAACTCGA 59.330 50.000 0.00 0.00 37.11 4.04
907 2019 0.388649 AGCCACGACACAACTCGATC 60.389 55.000 0.00 0.00 37.11 3.69
908 2020 1.674611 GCCACGACACAACTCGATCG 61.675 60.000 9.36 9.36 40.39 3.69
910 2022 1.135888 CCACGACACAACTCGATCGTA 60.136 52.381 15.94 0.90 45.48 3.43
946 2060 0.683828 TATTCCACGTCGGCCTACCA 60.684 55.000 0.00 0.00 34.57 3.25
1169 2302 3.755628 GCGCTCCTACCACGTCCA 61.756 66.667 0.00 0.00 0.00 4.02
1475 2608 1.674764 CTCAGTCTCGCATCCCTGCT 61.675 60.000 0.00 0.00 46.65 4.24
1489 2622 1.558756 CCCTGCTGTCCAAGAATCTCT 59.441 52.381 0.00 0.00 0.00 3.10
1635 2795 1.680651 CGTCCTGGAGCTCCACTCT 60.681 63.158 32.00 0.00 45.48 3.24
1636 2796 0.394488 CGTCCTGGAGCTCCACTCTA 60.394 60.000 32.00 13.88 45.48 2.43
1680 2840 1.028330 ATGTTCCTGGTGATGCAGCG 61.028 55.000 0.00 0.00 34.27 5.18
1765 2925 1.668151 GACTGCACCTGGACGAACC 60.668 63.158 0.00 0.00 39.54 3.62
1773 2933 3.998672 TGGACGAACCAGACCGGC 61.999 66.667 0.00 0.00 44.64 6.13
1775 2935 4.353437 GACGAACCAGACCGGCGT 62.353 66.667 6.01 0.00 39.03 5.68
1779 2939 3.222354 GAACCAGACCGGCGTGACT 62.222 63.158 6.01 0.01 39.03 3.41
1846 3006 0.442699 GAATTTTCGCGAGCCGTTCT 59.557 50.000 9.59 0.00 38.35 3.01
1847 3007 0.872388 AATTTTCGCGAGCCGTTCTT 59.128 45.000 9.59 0.00 38.35 2.52
1874 3037 1.283793 CACAAGCCGCAAACCTCAG 59.716 57.895 0.00 0.00 0.00 3.35
1884 3047 0.036010 CAAACCTCAGGCGAGTGGAT 60.036 55.000 0.00 0.00 37.59 3.41
1945 3111 3.515286 CATGCGCCTGCTTCTGGG 61.515 66.667 4.18 0.00 43.34 4.45
2091 3259 2.659016 CTCGAGCTGGAGGCACAA 59.341 61.111 17.37 0.00 44.79 3.33
2137 3305 3.507924 GATCGGCCATTGCGCACA 61.508 61.111 11.12 1.31 38.85 4.57
2160 3328 0.987613 TCCACTGCTGCCCCATGATA 60.988 55.000 0.00 0.00 0.00 2.15
2214 3382 1.609555 GCGTCGGAGATCAAGTCCTAT 59.390 52.381 0.00 0.00 40.67 2.57
2216 3384 2.879026 CGTCGGAGATCAAGTCCTATGA 59.121 50.000 0.00 0.00 40.67 2.15
2562 3976 0.302890 GCAGATCGATTGCTGGTTCG 59.697 55.000 19.01 0.00 38.51 3.95
2789 4256 6.346359 GCTTGAAGTGTTCATTGCAATTTCTC 60.346 38.462 9.83 4.49 39.84 2.87
2853 4406 2.616842 GGAACATGTGAACGACTTGGTT 59.383 45.455 0.00 0.00 34.66 3.67
3000 4553 4.531659 AGAAACAACACAGTTAAGACGC 57.468 40.909 0.00 0.00 0.00 5.19
3074 4627 3.858503 GCTTGGTGAATTCTTGCCAACTC 60.859 47.826 18.78 12.83 36.23 3.01
3333 5083 7.362056 GCTTGGCAGTGTAAGATTATGAGAAAA 60.362 37.037 11.82 0.00 0.00 2.29
3410 5166 1.108776 AAGCGCTCGGTGTAGGAATA 58.891 50.000 12.06 0.00 0.00 1.75
3442 5198 3.293337 TGGCTTATACTTGTAGCTCGGA 58.707 45.455 0.00 0.00 35.30 4.55
3472 5228 1.141881 CACGTGATCTTCCTCCCCG 59.858 63.158 10.90 0.00 0.00 5.73
3482 5238 3.508840 CCTCCCCGCAATTGACGC 61.509 66.667 10.34 0.00 0.00 5.19
3489 5245 0.813610 CCGCAATTGACGCCTCCATA 60.814 55.000 10.34 0.00 0.00 2.74
3500 5256 2.499205 CTCCATAACTGCGGGCGA 59.501 61.111 0.00 0.00 0.00 5.54
3586 5344 8.532186 AGTTTACACCATGGCAATTATATTGA 57.468 30.769 13.04 0.00 0.00 2.57
3600 5358 8.246180 GCAATTATATTGATTAGACCATGGGTG 58.754 37.037 18.09 0.00 35.25 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.695928 GCCAGTTTAGTTCCTTTCTGGTAG 59.304 45.833 10.08 0.00 42.77 3.18
1 2 4.349930 AGCCAGTTTAGTTCCTTTCTGGTA 59.650 41.667 10.08 0.00 42.77 3.25
2 3 3.138468 AGCCAGTTTAGTTCCTTTCTGGT 59.862 43.478 10.08 0.00 42.77 4.00
3 4 3.756117 AGCCAGTTTAGTTCCTTTCTGG 58.244 45.455 0.00 0.00 43.41 3.86
4 5 4.557496 GCAAGCCAGTTTAGTTCCTTTCTG 60.557 45.833 0.00 0.00 0.00 3.02
5 6 3.570125 GCAAGCCAGTTTAGTTCCTTTCT 59.430 43.478 0.00 0.00 0.00 2.52
6 7 3.305403 GGCAAGCCAGTTTAGTTCCTTTC 60.305 47.826 6.14 0.00 35.81 2.62
7 8 2.628178 GGCAAGCCAGTTTAGTTCCTTT 59.372 45.455 6.14 0.00 35.81 3.11
8 9 2.158460 AGGCAAGCCAGTTTAGTTCCTT 60.158 45.455 14.40 0.00 38.92 3.36
9 10 1.425448 AGGCAAGCCAGTTTAGTTCCT 59.575 47.619 14.40 0.00 38.92 3.36
10 11 1.541588 CAGGCAAGCCAGTTTAGTTCC 59.458 52.381 14.40 0.00 38.92 3.62
11 12 1.541588 CCAGGCAAGCCAGTTTAGTTC 59.458 52.381 14.40 0.00 38.92 3.01
12 13 1.144913 TCCAGGCAAGCCAGTTTAGTT 59.855 47.619 14.40 0.00 38.92 2.24
13 14 0.771127 TCCAGGCAAGCCAGTTTAGT 59.229 50.000 14.40 0.00 38.92 2.24
14 15 1.909700 TTCCAGGCAAGCCAGTTTAG 58.090 50.000 14.40 0.00 38.92 1.85
15 16 2.158534 TCTTTCCAGGCAAGCCAGTTTA 60.159 45.455 14.40 0.00 38.92 2.01
16 17 1.043022 CTTTCCAGGCAAGCCAGTTT 58.957 50.000 14.40 0.00 38.92 2.66
17 18 0.185901 TCTTTCCAGGCAAGCCAGTT 59.814 50.000 14.40 0.00 38.92 3.16
18 19 0.185901 TTCTTTCCAGGCAAGCCAGT 59.814 50.000 14.40 0.00 38.92 4.00
19 20 1.203994 CATTCTTTCCAGGCAAGCCAG 59.796 52.381 14.40 5.05 38.92 4.85
20 21 1.259609 CATTCTTTCCAGGCAAGCCA 58.740 50.000 14.40 0.00 38.92 4.75
21 22 0.533951 CCATTCTTTCCAGGCAAGCC 59.466 55.000 2.02 2.02 0.00 4.35
22 23 1.549203 TCCATTCTTTCCAGGCAAGC 58.451 50.000 0.00 0.00 0.00 4.01
23 24 3.677976 GCAATCCATTCTTTCCAGGCAAG 60.678 47.826 0.00 0.00 0.00 4.01
24 25 2.234414 GCAATCCATTCTTTCCAGGCAA 59.766 45.455 0.00 0.00 0.00 4.52
25 26 1.826720 GCAATCCATTCTTTCCAGGCA 59.173 47.619 0.00 0.00 0.00 4.75
26 27 1.202336 CGCAATCCATTCTTTCCAGGC 60.202 52.381 0.00 0.00 0.00 4.85
27 28 2.098117 GTCGCAATCCATTCTTTCCAGG 59.902 50.000 0.00 0.00 0.00 4.45
28 29 2.098117 GGTCGCAATCCATTCTTTCCAG 59.902 50.000 0.00 0.00 0.00 3.86
29 30 2.091541 GGTCGCAATCCATTCTTTCCA 58.908 47.619 0.00 0.00 0.00 3.53
30 31 1.405463 GGGTCGCAATCCATTCTTTCC 59.595 52.381 0.00 0.00 0.00 3.13
31 32 2.369394 AGGGTCGCAATCCATTCTTTC 58.631 47.619 0.00 0.00 0.00 2.62
32 33 2.493278 CAAGGGTCGCAATCCATTCTTT 59.507 45.455 0.00 0.00 0.00 2.52
33 34 2.094675 CAAGGGTCGCAATCCATTCTT 58.905 47.619 0.00 0.00 0.00 2.52
34 35 1.281867 TCAAGGGTCGCAATCCATTCT 59.718 47.619 0.00 0.00 0.00 2.40
35 36 1.750193 TCAAGGGTCGCAATCCATTC 58.250 50.000 0.00 0.00 0.00 2.67
36 37 2.094675 CTTCAAGGGTCGCAATCCATT 58.905 47.619 0.00 0.00 0.00 3.16
37 38 1.281867 TCTTCAAGGGTCGCAATCCAT 59.718 47.619 0.00 0.00 0.00 3.41
38 39 0.690192 TCTTCAAGGGTCGCAATCCA 59.310 50.000 0.00 0.00 0.00 3.41
39 40 1.373570 CTCTTCAAGGGTCGCAATCC 58.626 55.000 0.00 0.00 0.00 3.01
40 41 0.729690 GCTCTTCAAGGGTCGCAATC 59.270 55.000 0.00 0.00 0.00 2.67
41 42 0.326264 AGCTCTTCAAGGGTCGCAAT 59.674 50.000 0.00 0.00 0.00 3.56
42 43 0.973632 TAGCTCTTCAAGGGTCGCAA 59.026 50.000 0.00 0.00 0.00 4.85
43 44 0.973632 TTAGCTCTTCAAGGGTCGCA 59.026 50.000 0.00 0.00 0.00 5.10
44 45 1.936547 CATTAGCTCTTCAAGGGTCGC 59.063 52.381 0.00 0.00 0.00 5.19
45 46 2.093447 ACCATTAGCTCTTCAAGGGTCG 60.093 50.000 0.00 0.00 33.78 4.79
46 47 3.636153 ACCATTAGCTCTTCAAGGGTC 57.364 47.619 0.00 0.00 33.78 4.46
47 48 4.080863 CAGTACCATTAGCTCTTCAAGGGT 60.081 45.833 8.26 8.26 41.40 4.34
48 49 4.446371 CAGTACCATTAGCTCTTCAAGGG 58.554 47.826 0.00 0.00 0.00 3.95
49 50 4.162320 TCCAGTACCATTAGCTCTTCAAGG 59.838 45.833 0.00 0.00 0.00 3.61
50 51 5.105146 AGTCCAGTACCATTAGCTCTTCAAG 60.105 44.000 0.00 0.00 0.00 3.02
51 52 4.777896 AGTCCAGTACCATTAGCTCTTCAA 59.222 41.667 0.00 0.00 0.00 2.69
52 53 4.160439 CAGTCCAGTACCATTAGCTCTTCA 59.840 45.833 0.00 0.00 0.00 3.02
53 54 4.402793 TCAGTCCAGTACCATTAGCTCTTC 59.597 45.833 0.00 0.00 0.00 2.87
54 55 4.353777 TCAGTCCAGTACCATTAGCTCTT 58.646 43.478 0.00 0.00 0.00 2.85
55 56 3.982516 TCAGTCCAGTACCATTAGCTCT 58.017 45.455 0.00 0.00 0.00 4.09
56 57 4.946478 ATCAGTCCAGTACCATTAGCTC 57.054 45.455 0.00 0.00 0.00 4.09
57 58 4.282195 GCTATCAGTCCAGTACCATTAGCT 59.718 45.833 0.00 0.00 31.39 3.32
58 59 4.561105 GCTATCAGTCCAGTACCATTAGC 58.439 47.826 0.00 0.00 0.00 3.09
59 60 4.799678 CGCTATCAGTCCAGTACCATTAG 58.200 47.826 0.00 0.00 0.00 1.73
60 61 3.005472 GCGCTATCAGTCCAGTACCATTA 59.995 47.826 0.00 0.00 0.00 1.90
61 62 2.224066 GCGCTATCAGTCCAGTACCATT 60.224 50.000 0.00 0.00 0.00 3.16
62 63 1.341531 GCGCTATCAGTCCAGTACCAT 59.658 52.381 0.00 0.00 0.00 3.55
63 64 0.744874 GCGCTATCAGTCCAGTACCA 59.255 55.000 0.00 0.00 0.00 3.25
64 65 0.744874 TGCGCTATCAGTCCAGTACC 59.255 55.000 9.73 0.00 0.00 3.34
65 66 1.405821 AGTGCGCTATCAGTCCAGTAC 59.594 52.381 9.73 0.00 0.00 2.73
66 67 1.405463 CAGTGCGCTATCAGTCCAGTA 59.595 52.381 9.73 0.00 0.00 2.74
67 68 0.174389 CAGTGCGCTATCAGTCCAGT 59.826 55.000 9.73 0.00 0.00 4.00
68 69 0.457443 TCAGTGCGCTATCAGTCCAG 59.543 55.000 9.73 0.00 0.00 3.86
69 70 1.114627 ATCAGTGCGCTATCAGTCCA 58.885 50.000 9.73 0.00 0.00 4.02
70 71 1.863454 CAATCAGTGCGCTATCAGTCC 59.137 52.381 9.73 0.00 0.00 3.85
71 72 2.814269 TCAATCAGTGCGCTATCAGTC 58.186 47.619 9.73 0.00 0.00 3.51
72 73 2.967599 TCAATCAGTGCGCTATCAGT 57.032 45.000 9.73 0.00 0.00 3.41
73 74 3.121092 CGATTCAATCAGTGCGCTATCAG 60.121 47.826 9.73 0.00 0.00 2.90
74 75 2.796593 CGATTCAATCAGTGCGCTATCA 59.203 45.455 9.73 0.00 0.00 2.15
75 76 3.052745 TCGATTCAATCAGTGCGCTATC 58.947 45.455 9.73 0.00 0.00 2.08
76 77 2.797156 GTCGATTCAATCAGTGCGCTAT 59.203 45.455 9.73 0.00 0.00 2.97
77 78 2.193447 GTCGATTCAATCAGTGCGCTA 58.807 47.619 9.73 0.00 0.00 4.26
78 79 1.002366 GTCGATTCAATCAGTGCGCT 58.998 50.000 9.73 0.00 0.00 5.92
79 80 0.026803 GGTCGATTCAATCAGTGCGC 59.973 55.000 0.00 0.00 0.00 6.09
80 81 0.652592 GGGTCGATTCAATCAGTGCG 59.347 55.000 0.00 0.00 0.00 5.34
81 82 1.017387 GGGGTCGATTCAATCAGTGC 58.983 55.000 0.00 0.00 0.00 4.40
82 83 1.290203 CGGGGTCGATTCAATCAGTG 58.710 55.000 0.00 0.00 39.00 3.66
83 84 0.178068 CCGGGGTCGATTCAATCAGT 59.822 55.000 0.00 0.00 39.00 3.41
84 85 0.464036 TCCGGGGTCGATTCAATCAG 59.536 55.000 0.00 0.00 39.00 2.90
85 86 0.177141 GTCCGGGGTCGATTCAATCA 59.823 55.000 0.00 0.00 39.00 2.57
86 87 0.874607 CGTCCGGGGTCGATTCAATC 60.875 60.000 0.00 0.00 39.00 2.67
87 88 1.143183 CGTCCGGGGTCGATTCAAT 59.857 57.895 0.00 0.00 39.00 2.57
88 89 0.964860 TACGTCCGGGGTCGATTCAA 60.965 55.000 17.99 0.00 39.00 2.69
89 90 1.378382 TACGTCCGGGGTCGATTCA 60.378 57.895 17.99 2.03 39.00 2.57
90 91 1.064783 GTACGTCCGGGGTCGATTC 59.935 63.158 17.99 6.98 39.00 2.52
91 92 2.418083 GGTACGTCCGGGGTCGATT 61.418 63.158 17.99 3.28 39.00 3.34
92 93 2.830370 GGTACGTCCGGGGTCGAT 60.830 66.667 17.99 7.77 39.00 3.59
93 94 4.343323 TGGTACGTCCGGGGTCGA 62.343 66.667 17.99 0.00 39.52 4.20
94 95 4.120331 GTGGTACGTCCGGGGTCG 62.120 72.222 0.00 7.36 39.52 4.79
95 96 3.763356 GGTGGTACGTCCGGGGTC 61.763 72.222 0.00 0.00 39.52 4.46
101 102 2.996734 TTCCCCGGTGGTACGTCC 60.997 66.667 0.00 0.00 34.77 4.79
102 103 2.262603 GTTCCCCGGTGGTACGTC 59.737 66.667 0.00 0.00 34.77 4.34
103 104 3.313524 GGTTCCCCGGTGGTACGT 61.314 66.667 0.00 0.00 35.34 3.57
104 105 2.999063 AGGTTCCCCGGTGGTACG 60.999 66.667 0.00 0.00 35.34 3.67
105 106 2.219164 ACAGGTTCCCCGGTGGTAC 61.219 63.158 0.00 5.44 37.79 3.34
106 107 2.204889 ACAGGTTCCCCGGTGGTA 59.795 61.111 0.00 0.00 37.79 3.25
111 112 4.722700 CAGGCACAGGTTCCCCGG 62.723 72.222 0.00 0.00 35.12 5.73
112 113 4.722700 CCAGGCACAGGTTCCCCG 62.723 72.222 0.00 0.00 35.12 5.73
113 114 3.256960 TCCAGGCACAGGTTCCCC 61.257 66.667 0.00 0.00 35.97 4.81
114 115 2.190488 CTCTCCAGGCACAGGTTCCC 62.190 65.000 0.00 0.00 35.97 3.97
115 116 1.194781 TCTCTCCAGGCACAGGTTCC 61.195 60.000 0.00 0.00 35.97 3.62
116 117 0.687354 TTCTCTCCAGGCACAGGTTC 59.313 55.000 0.00 0.00 35.97 3.62
117 118 1.280421 GATTCTCTCCAGGCACAGGTT 59.720 52.381 0.00 0.00 35.97 3.50
118 119 0.908198 GATTCTCTCCAGGCACAGGT 59.092 55.000 0.00 0.00 35.97 4.00
119 120 1.138661 GAGATTCTCTCCAGGCACAGG 59.861 57.143 6.42 0.00 37.55 4.00
120 121 2.109774 AGAGATTCTCTCCAGGCACAG 58.890 52.381 10.50 0.00 44.42 3.66
121 122 2.244486 AGAGATTCTCTCCAGGCACA 57.756 50.000 10.50 0.00 44.42 4.57
147 148 2.046892 TTCTTCTGGGCGAGCTGC 60.047 61.111 0.00 0.00 45.38 5.25
148 149 0.036952 TTCTTCTTCTGGGCGAGCTG 60.037 55.000 0.00 0.00 0.00 4.24
149 150 0.687354 TTTCTTCTTCTGGGCGAGCT 59.313 50.000 0.00 0.00 0.00 4.09
150 151 1.082690 CTTTCTTCTTCTGGGCGAGC 58.917 55.000 0.00 0.00 0.00 5.03
151 152 2.342179 GTCTTTCTTCTTCTGGGCGAG 58.658 52.381 0.00 0.00 0.00 5.03
152 153 1.002087 GGTCTTTCTTCTTCTGGGCGA 59.998 52.381 0.00 0.00 0.00 5.54
153 154 1.443802 GGTCTTTCTTCTTCTGGGCG 58.556 55.000 0.00 0.00 0.00 6.13
154 155 1.827681 GGGTCTTTCTTCTTCTGGGC 58.172 55.000 0.00 0.00 0.00 5.36
155 156 1.946283 GCGGGTCTTTCTTCTTCTGGG 60.946 57.143 0.00 0.00 0.00 4.45
156 157 1.443802 GCGGGTCTTTCTTCTTCTGG 58.556 55.000 0.00 0.00 0.00 3.86
157 158 1.443802 GGCGGGTCTTTCTTCTTCTG 58.556 55.000 0.00 0.00 0.00 3.02
158 159 0.037232 CGGCGGGTCTTTCTTCTTCT 60.037 55.000 0.00 0.00 0.00 2.85
159 160 1.636570 GCGGCGGGTCTTTCTTCTTC 61.637 60.000 9.78 0.00 0.00 2.87
160 161 1.671379 GCGGCGGGTCTTTCTTCTT 60.671 57.895 9.78 0.00 0.00 2.52
161 162 1.255667 TAGCGGCGGGTCTTTCTTCT 61.256 55.000 9.78 0.00 0.00 2.85
162 163 0.390735 TTAGCGGCGGGTCTTTCTTC 60.391 55.000 9.78 0.00 0.00 2.87
163 164 0.672711 GTTAGCGGCGGGTCTTTCTT 60.673 55.000 9.78 0.00 0.00 2.52
164 165 1.079336 GTTAGCGGCGGGTCTTTCT 60.079 57.895 9.78 0.00 0.00 2.52
165 166 2.450345 CGTTAGCGGCGGGTCTTTC 61.450 63.158 9.78 0.00 0.00 2.62
166 167 2.433664 CGTTAGCGGCGGGTCTTT 60.434 61.111 9.78 0.00 0.00 2.52
167 168 2.438951 TTTCGTTAGCGGCGGGTCTT 62.439 55.000 9.78 0.00 38.89 3.01
168 169 2.234913 ATTTCGTTAGCGGCGGGTCT 62.235 55.000 9.78 0.00 38.89 3.85
169 170 1.759293 GATTTCGTTAGCGGCGGGTC 61.759 60.000 9.78 0.00 38.89 4.46
170 171 1.812507 GATTTCGTTAGCGGCGGGT 60.813 57.895 9.78 0.47 38.89 5.28
171 172 2.531376 GGATTTCGTTAGCGGCGGG 61.531 63.158 9.78 0.00 38.89 6.13
172 173 2.867091 CGGATTTCGTTAGCGGCGG 61.867 63.158 9.78 0.00 38.89 6.13
173 174 2.618839 CGGATTTCGTTAGCGGCG 59.381 61.111 0.51 0.51 38.89 6.46
174 175 1.759293 GACCGGATTTCGTTAGCGGC 61.759 60.000 9.46 0.00 38.89 6.53
175 176 0.179119 AGACCGGATTTCGTTAGCGG 60.179 55.000 9.46 0.00 38.89 5.52
176 177 1.636988 AAGACCGGATTTCGTTAGCG 58.363 50.000 9.46 0.00 37.11 4.26
177 178 2.997986 TGAAAGACCGGATTTCGTTAGC 59.002 45.455 22.76 7.72 39.10 3.09
178 179 4.494199 GCATGAAAGACCGGATTTCGTTAG 60.494 45.833 21.27 15.20 39.10 2.34
179 180 3.372822 GCATGAAAGACCGGATTTCGTTA 59.627 43.478 21.27 11.20 39.10 3.18
180 181 2.161609 GCATGAAAGACCGGATTTCGTT 59.838 45.455 21.27 9.45 39.10 3.85
181 182 1.737793 GCATGAAAGACCGGATTTCGT 59.262 47.619 22.76 21.09 39.10 3.85
182 183 1.737236 TGCATGAAAGACCGGATTTCG 59.263 47.619 22.76 14.95 39.10 3.46
183 184 3.440173 TCTTGCATGAAAGACCGGATTTC 59.560 43.478 22.07 22.07 37.21 2.17
184 185 3.420893 TCTTGCATGAAAGACCGGATTT 58.579 40.909 12.45 9.03 31.19 2.17
185 186 3.012518 CTCTTGCATGAAAGACCGGATT 58.987 45.455 12.45 0.00 32.75 3.01
186 187 2.026822 ACTCTTGCATGAAAGACCGGAT 60.027 45.455 12.45 0.00 32.75 4.18
187 188 1.347707 ACTCTTGCATGAAAGACCGGA 59.652 47.619 12.45 0.00 32.75 5.14
188 189 1.813513 ACTCTTGCATGAAAGACCGG 58.186 50.000 12.45 5.87 32.75 5.28
189 190 3.250762 TGAAACTCTTGCATGAAAGACCG 59.749 43.478 12.45 6.59 32.75 4.79
190 191 4.836125 TGAAACTCTTGCATGAAAGACC 57.164 40.909 12.45 3.23 32.75 3.85
191 192 7.704789 AAAATGAAACTCTTGCATGAAAGAC 57.295 32.000 12.45 3.53 32.75 3.01
192 193 7.225145 CCAAAAATGAAACTCTTGCATGAAAGA 59.775 33.333 15.61 15.61 34.97 2.52
193 194 7.349711 CCAAAAATGAAACTCTTGCATGAAAG 58.650 34.615 7.16 7.16 0.00 2.62
194 195 6.238429 GCCAAAAATGAAACTCTTGCATGAAA 60.238 34.615 0.00 0.00 0.00 2.69
195 196 5.236911 GCCAAAAATGAAACTCTTGCATGAA 59.763 36.000 0.00 0.00 0.00 2.57
196 197 4.751098 GCCAAAAATGAAACTCTTGCATGA 59.249 37.500 0.00 1.92 0.00 3.07
197 198 4.083696 GGCCAAAAATGAAACTCTTGCATG 60.084 41.667 0.00 0.00 0.00 4.06
198 199 4.067192 GGCCAAAAATGAAACTCTTGCAT 58.933 39.130 0.00 0.00 0.00 3.96
199 200 3.465871 GGCCAAAAATGAAACTCTTGCA 58.534 40.909 0.00 0.00 0.00 4.08
200 201 2.476241 CGGCCAAAAATGAAACTCTTGC 59.524 45.455 2.24 0.00 0.00 4.01
201 202 2.476241 GCGGCCAAAAATGAAACTCTTG 59.524 45.455 2.24 0.00 0.00 3.02
202 203 2.365293 AGCGGCCAAAAATGAAACTCTT 59.635 40.909 2.24 0.00 0.00 2.85
203 204 1.963515 AGCGGCCAAAAATGAAACTCT 59.036 42.857 2.24 0.00 0.00 3.24
204 205 2.438868 AGCGGCCAAAAATGAAACTC 57.561 45.000 2.24 0.00 0.00 3.01
205 206 2.890945 AGTAGCGGCCAAAAATGAAACT 59.109 40.909 2.24 0.00 0.00 2.66
206 207 3.297830 AGTAGCGGCCAAAAATGAAAC 57.702 42.857 2.24 0.00 0.00 2.78
207 208 3.120130 CGTAGTAGCGGCCAAAAATGAAA 60.120 43.478 2.24 0.00 0.00 2.69
208 209 2.417239 CGTAGTAGCGGCCAAAAATGAA 59.583 45.455 2.24 0.00 0.00 2.57
209 210 2.004017 CGTAGTAGCGGCCAAAAATGA 58.996 47.619 2.24 0.00 0.00 2.57
210 211 1.735571 ACGTAGTAGCGGCCAAAAATG 59.264 47.619 2.24 0.00 41.94 2.32
211 212 2.103537 ACGTAGTAGCGGCCAAAAAT 57.896 45.000 2.24 0.00 41.94 1.82
212 213 1.799994 GAACGTAGTAGCGGCCAAAAA 59.200 47.619 2.24 0.00 45.00 1.94
213 214 1.431496 GAACGTAGTAGCGGCCAAAA 58.569 50.000 2.24 0.00 45.00 2.44
214 215 0.733566 CGAACGTAGTAGCGGCCAAA 60.734 55.000 2.24 0.00 45.00 3.28
215 216 1.153978 CGAACGTAGTAGCGGCCAA 60.154 57.895 2.24 0.00 45.00 4.52
216 217 2.257286 GACGAACGTAGTAGCGGCCA 62.257 60.000 2.24 0.00 45.00 5.36
217 218 1.584742 GACGAACGTAGTAGCGGCC 60.585 63.158 0.00 0.00 45.00 6.13
218 219 1.931612 CGACGAACGTAGTAGCGGC 60.932 63.158 0.00 0.00 45.00 6.53
219 220 0.095245 TTCGACGAACGTAGTAGCGG 59.905 55.000 6.10 0.00 45.00 5.52
220 221 1.869503 TTTCGACGAACGTAGTAGCG 58.130 50.000 10.38 0.00 45.00 4.26
221 222 3.229552 AGTTTTCGACGAACGTAGTAGC 58.770 45.455 10.38 0.00 45.00 3.58
222 223 5.142962 AGAAGTTTTCGACGAACGTAGTAG 58.857 41.667 10.38 0.00 43.13 2.57
223 224 5.095691 AGAAGTTTTCGACGAACGTAGTA 57.904 39.130 10.38 0.00 43.13 1.82
224 225 3.957468 AGAAGTTTTCGACGAACGTAGT 58.043 40.909 10.38 0.00 43.13 2.73
225 226 4.438797 TCAAGAAGTTTTCGACGAACGTAG 59.561 41.667 10.38 0.12 43.13 3.51
226 227 4.350346 TCAAGAAGTTTTCGACGAACGTA 58.650 39.130 10.38 0.00 43.13 3.57
227 228 3.181397 TCAAGAAGTTTTCGACGAACGT 58.819 40.909 10.38 0.00 43.13 3.99
228 229 3.829066 TCAAGAAGTTTTCGACGAACG 57.171 42.857 10.38 0.00 44.09 3.95
229 230 4.455124 CCATCAAGAAGTTTTCGACGAAC 58.545 43.478 10.38 0.00 34.02 3.95
230 231 3.059188 GCCATCAAGAAGTTTTCGACGAA 60.059 43.478 6.10 6.10 34.02 3.85
231 232 2.478894 GCCATCAAGAAGTTTTCGACGA 59.521 45.455 0.00 0.00 34.02 4.20
232 233 2.223144 TGCCATCAAGAAGTTTTCGACG 59.777 45.455 0.00 0.00 34.02 5.12
233 234 3.555518 GTGCCATCAAGAAGTTTTCGAC 58.444 45.455 0.00 0.00 34.02 4.20
234 235 2.552315 GGTGCCATCAAGAAGTTTTCGA 59.448 45.455 0.00 0.00 34.02 3.71
235 236 2.293122 TGGTGCCATCAAGAAGTTTTCG 59.707 45.455 0.00 0.00 34.02 3.46
236 237 4.525912 ATGGTGCCATCAAGAAGTTTTC 57.474 40.909 0.00 0.00 29.42 2.29
248 249 3.396946 AGGTAATGAGATGATGGTGCCAT 59.603 43.478 2.95 2.95 39.69 4.40
249 250 2.779430 AGGTAATGAGATGATGGTGCCA 59.221 45.455 0.00 0.00 0.00 4.92
250 251 3.498774 AGGTAATGAGATGATGGTGCC 57.501 47.619 0.00 0.00 0.00 5.01
251 252 7.516198 AAATAAGGTAATGAGATGATGGTGC 57.484 36.000 0.00 0.00 0.00 5.01
275 276 1.202722 AGCCGAAGTCGAAGGGAAAAA 60.203 47.619 1.43 0.00 43.02 1.94
276 277 0.395312 AGCCGAAGTCGAAGGGAAAA 59.605 50.000 1.43 0.00 43.02 2.29
277 278 1.259609 TAGCCGAAGTCGAAGGGAAA 58.740 50.000 1.43 0.00 43.02 3.13
278 279 1.136305 CATAGCCGAAGTCGAAGGGAA 59.864 52.381 1.43 0.00 43.02 3.97
279 280 0.744874 CATAGCCGAAGTCGAAGGGA 59.255 55.000 1.43 0.00 43.02 4.20
280 281 0.744874 TCATAGCCGAAGTCGAAGGG 59.255 55.000 1.43 0.00 43.02 3.95
281 282 1.536284 GGTCATAGCCGAAGTCGAAGG 60.536 57.143 1.43 0.00 43.02 3.46
282 283 1.134367 TGGTCATAGCCGAAGTCGAAG 59.866 52.381 1.43 0.00 43.02 3.79
283 284 1.179152 TGGTCATAGCCGAAGTCGAA 58.821 50.000 1.43 0.00 43.02 3.71
284 285 1.179152 TTGGTCATAGCCGAAGTCGA 58.821 50.000 1.43 0.00 43.02 4.20
285 286 1.860950 CATTGGTCATAGCCGAAGTCG 59.139 52.381 0.00 0.00 39.44 4.18
286 287 1.599542 GCATTGGTCATAGCCGAAGTC 59.400 52.381 0.00 0.00 0.00 3.01
287 288 1.668419 GCATTGGTCATAGCCGAAGT 58.332 50.000 0.00 0.00 0.00 3.01
288 289 0.947244 GGCATTGGTCATAGCCGAAG 59.053 55.000 0.00 0.00 37.41 3.79
289 290 3.094386 GGCATTGGTCATAGCCGAA 57.906 52.632 0.00 0.00 37.41 4.30
290 291 4.876701 GGCATTGGTCATAGCCGA 57.123 55.556 0.00 0.00 37.41 5.54
292 293 1.109323 GTGGGGCATTGGTCATAGCC 61.109 60.000 0.00 0.00 46.28 3.93
293 294 1.109323 GGTGGGGCATTGGTCATAGC 61.109 60.000 0.00 0.00 0.00 2.97
294 295 0.552848 AGGTGGGGCATTGGTCATAG 59.447 55.000 0.00 0.00 0.00 2.23
295 296 1.774254 CTAGGTGGGGCATTGGTCATA 59.226 52.381 0.00 0.00 0.00 2.15
296 297 0.552848 CTAGGTGGGGCATTGGTCAT 59.447 55.000 0.00 0.00 0.00 3.06
297 298 1.998530 CTAGGTGGGGCATTGGTCA 59.001 57.895 0.00 0.00 0.00 4.02
298 299 1.453928 GCTAGGTGGGGCATTGGTC 60.454 63.158 0.00 0.00 0.00 4.02
299 300 1.930656 AGCTAGGTGGGGCATTGGT 60.931 57.895 0.00 0.00 0.00 3.67
300 301 1.454479 CAGCTAGGTGGGGCATTGG 60.454 63.158 14.29 0.00 0.00 3.16
301 302 0.034186 TTCAGCTAGGTGGGGCATTG 60.034 55.000 21.22 0.00 0.00 2.82
302 303 0.929244 ATTCAGCTAGGTGGGGCATT 59.071 50.000 21.22 0.00 0.00 3.56
303 304 1.701847 CTATTCAGCTAGGTGGGGCAT 59.298 52.381 21.22 10.97 0.00 4.40
304 305 1.131638 CTATTCAGCTAGGTGGGGCA 58.868 55.000 21.22 0.00 0.00 5.36
305 306 0.398318 CCTATTCAGCTAGGTGGGGC 59.602 60.000 21.22 0.00 34.66 5.80
306 307 0.398318 GCCTATTCAGCTAGGTGGGG 59.602 60.000 21.22 17.40 40.46 4.96
307 308 0.034059 CGCCTATTCAGCTAGGTGGG 59.966 60.000 21.22 15.01 42.99 4.61
308 309 3.595691 CGCCTATTCAGCTAGGTGG 57.404 57.895 21.22 6.49 42.99 4.61
310 311 3.028850 TGTTACGCCTATTCAGCTAGGT 58.971 45.455 2.26 0.00 40.46 3.08
311 312 3.728076 TGTTACGCCTATTCAGCTAGG 57.272 47.619 0.00 0.00 41.16 3.02
312 313 4.025647 GCTTTGTTACGCCTATTCAGCTAG 60.026 45.833 0.00 0.00 0.00 3.42
313 314 3.869246 GCTTTGTTACGCCTATTCAGCTA 59.131 43.478 0.00 0.00 0.00 3.32
314 315 2.678336 GCTTTGTTACGCCTATTCAGCT 59.322 45.455 0.00 0.00 0.00 4.24
315 316 2.678336 AGCTTTGTTACGCCTATTCAGC 59.322 45.455 0.00 0.00 0.00 4.26
316 317 4.270325 GGTAGCTTTGTTACGCCTATTCAG 59.730 45.833 0.00 0.00 0.00 3.02
317 318 4.081309 AGGTAGCTTTGTTACGCCTATTCA 60.081 41.667 0.00 0.00 0.00 2.57
318 319 4.270325 CAGGTAGCTTTGTTACGCCTATTC 59.730 45.833 0.00 0.00 0.00 1.75
319 320 4.081309 TCAGGTAGCTTTGTTACGCCTATT 60.081 41.667 0.00 0.00 0.00 1.73
320 321 3.449737 TCAGGTAGCTTTGTTACGCCTAT 59.550 43.478 0.00 0.00 0.00 2.57
321 322 2.827322 TCAGGTAGCTTTGTTACGCCTA 59.173 45.455 0.00 0.00 0.00 3.93
322 323 1.621814 TCAGGTAGCTTTGTTACGCCT 59.378 47.619 0.00 0.00 0.00 5.52
323 324 2.088950 TCAGGTAGCTTTGTTACGCC 57.911 50.000 0.00 0.00 0.00 5.68
324 325 4.477302 TTTTCAGGTAGCTTTGTTACGC 57.523 40.909 0.00 0.00 0.00 4.42
325 326 5.449304 CCTTTTTCAGGTAGCTTTGTTACG 58.551 41.667 0.00 0.00 37.99 3.18
326 327 5.220381 GCCTTTTTCAGGTAGCTTTGTTAC 58.780 41.667 0.00 0.00 46.07 2.50
327 328 4.890581 TGCCTTTTTCAGGTAGCTTTGTTA 59.109 37.500 0.00 0.00 46.07 2.41
328 329 3.704061 TGCCTTTTTCAGGTAGCTTTGTT 59.296 39.130 0.00 0.00 46.07 2.83
329 330 3.295973 TGCCTTTTTCAGGTAGCTTTGT 58.704 40.909 0.00 0.00 46.07 2.83
330 331 4.301628 CTTGCCTTTTTCAGGTAGCTTTG 58.698 43.478 0.00 0.00 46.07 2.77
331 332 3.321968 CCTTGCCTTTTTCAGGTAGCTTT 59.678 43.478 0.00 0.00 46.07 3.51
332 333 2.893489 CCTTGCCTTTTTCAGGTAGCTT 59.107 45.455 0.00 0.00 46.07 3.74
333 334 2.158460 ACCTTGCCTTTTTCAGGTAGCT 60.158 45.455 0.00 0.00 46.07 3.32
334 335 2.029918 CACCTTGCCTTTTTCAGGTAGC 60.030 50.000 0.00 0.00 46.07 3.58
335 336 2.029918 GCACCTTGCCTTTTTCAGGTAG 60.030 50.000 0.00 0.00 46.07 3.18
336 337 1.960689 GCACCTTGCCTTTTTCAGGTA 59.039 47.619 0.00 0.00 46.07 3.08
337 338 0.752658 GCACCTTGCCTTTTTCAGGT 59.247 50.000 0.00 0.00 46.07 4.00
338 339 0.752054 TGCACCTTGCCTTTTTCAGG 59.248 50.000 0.00 0.00 44.23 3.86
339 340 1.538849 GGTGCACCTTGCCTTTTTCAG 60.539 52.381 29.12 0.00 44.23 3.02
340 341 0.463620 GGTGCACCTTGCCTTTTTCA 59.536 50.000 29.12 0.00 44.23 2.69
341 342 0.752658 AGGTGCACCTTGCCTTTTTC 59.247 50.000 33.20 2.62 46.09 2.29
342 343 2.914908 AGGTGCACCTTGCCTTTTT 58.085 47.368 33.20 7.71 46.09 1.94
343 344 4.705482 AGGTGCACCTTGCCTTTT 57.295 50.000 33.20 8.55 46.09 2.27
351 352 3.941483 CGATTTCAATCTAAGGTGCACCT 59.059 43.478 33.20 33.20 39.61 4.00
352 353 3.938963 TCGATTTCAATCTAAGGTGCACC 59.061 43.478 29.22 29.22 33.24 5.01
353 354 4.391830 TGTCGATTTCAATCTAAGGTGCAC 59.608 41.667 8.80 8.80 33.24 4.57
354 355 4.574892 TGTCGATTTCAATCTAAGGTGCA 58.425 39.130 0.00 0.00 33.24 4.57
355 356 5.545658 TTGTCGATTTCAATCTAAGGTGC 57.454 39.130 0.00 0.00 33.24 5.01
356 357 7.008628 GCAATTTGTCGATTTCAATCTAAGGTG 59.991 37.037 0.00 0.00 33.24 4.00
357 358 7.029563 GCAATTTGTCGATTTCAATCTAAGGT 58.970 34.615 0.00 0.00 33.24 3.50
358 359 6.195244 CGCAATTTGTCGATTTCAATCTAAGG 59.805 38.462 7.22 0.00 33.24 2.69
359 360 6.742718 ACGCAATTTGTCGATTTCAATCTAAG 59.257 34.615 16.34 0.00 33.24 2.18
360 361 6.607689 ACGCAATTTGTCGATTTCAATCTAA 58.392 32.000 16.34 0.00 33.24 2.10
361 362 6.176975 ACGCAATTTGTCGATTTCAATCTA 57.823 33.333 16.34 0.00 33.24 1.98
362 363 5.046910 ACGCAATTTGTCGATTTCAATCT 57.953 34.783 16.34 0.00 33.24 2.40
363 364 5.745653 AACGCAATTTGTCGATTTCAATC 57.254 34.783 16.34 0.00 0.00 2.67
364 365 6.354080 CAAAACGCAATTTGTCGATTTCAAT 58.646 32.000 16.34 0.00 35.93 2.57
365 366 5.722237 CAAAACGCAATTTGTCGATTTCAA 58.278 33.333 16.34 0.00 35.93 2.69
366 367 4.317698 GCAAAACGCAATTTGTCGATTTCA 60.318 37.500 16.34 0.00 41.34 2.69
367 368 4.133836 GCAAAACGCAATTTGTCGATTTC 58.866 39.130 16.34 9.46 41.34 2.17
368 369 3.059935 GGCAAAACGCAATTTGTCGATTT 60.060 39.130 16.34 14.10 45.17 2.17
369 370 2.474735 GGCAAAACGCAATTTGTCGATT 59.525 40.909 16.34 10.11 45.17 3.34
370 371 2.058057 GGCAAAACGCAATTTGTCGAT 58.942 42.857 16.34 5.54 45.17 3.59
371 372 1.202302 TGGCAAAACGCAATTTGTCGA 60.202 42.857 16.34 0.00 45.54 4.20
372 373 1.189884 CTGGCAAAACGCAATTTGTCG 59.810 47.619 10.19 10.32 45.54 4.35
373 374 2.468831 TCTGGCAAAACGCAATTTGTC 58.531 42.857 8.44 8.44 43.48 3.18
374 375 2.593346 TCTGGCAAAACGCAATTTGT 57.407 40.000 11.51 0.00 45.17 2.83
375 376 2.158058 CCATCTGGCAAAACGCAATTTG 59.842 45.455 6.80 6.80 45.17 2.32
376 377 2.036992 TCCATCTGGCAAAACGCAATTT 59.963 40.909 0.00 0.00 45.17 1.82
377 378 1.617850 TCCATCTGGCAAAACGCAATT 59.382 42.857 0.00 0.00 45.17 2.32
378 379 1.255882 TCCATCTGGCAAAACGCAAT 58.744 45.000 0.00 0.00 45.17 3.56
379 380 1.255882 ATCCATCTGGCAAAACGCAA 58.744 45.000 0.00 0.00 45.17 4.85
380 381 1.202114 GAATCCATCTGGCAAAACGCA 59.798 47.619 0.00 0.00 45.17 5.24
381 382 1.474077 AGAATCCATCTGGCAAAACGC 59.526 47.619 0.00 0.00 36.88 4.84
382 383 3.855689 AAGAATCCATCTGGCAAAACG 57.144 42.857 0.00 0.00 38.79 3.60
383 384 6.515272 TCTAAAGAATCCATCTGGCAAAAC 57.485 37.500 0.00 0.00 38.79 2.43
384 385 7.451255 TCTTTCTAAAGAATCCATCTGGCAAAA 59.549 33.333 2.68 0.00 41.75 2.44
385 386 6.947733 TCTTTCTAAAGAATCCATCTGGCAAA 59.052 34.615 2.68 0.00 41.75 3.68
386 387 6.484288 TCTTTCTAAAGAATCCATCTGGCAA 58.516 36.000 2.68 0.00 41.75 4.52
387 388 6.065976 TCTTTCTAAAGAATCCATCTGGCA 57.934 37.500 2.68 0.00 41.75 4.92
400 401 8.507524 AACTTTATCCGGGAATCTTTCTAAAG 57.492 34.615 16.74 16.74 37.36 1.85
401 402 8.104566 TGAACTTTATCCGGGAATCTTTCTAAA 58.895 33.333 0.00 0.00 0.00 1.85
402 403 7.626390 TGAACTTTATCCGGGAATCTTTCTAA 58.374 34.615 0.00 0.00 0.00 2.10
403 404 7.093024 ACTGAACTTTATCCGGGAATCTTTCTA 60.093 37.037 0.00 0.00 0.00 2.10
404 405 6.062258 TGAACTTTATCCGGGAATCTTTCT 57.938 37.500 0.00 0.00 0.00 2.52
405 406 5.880887 ACTGAACTTTATCCGGGAATCTTTC 59.119 40.000 0.00 1.58 0.00 2.62
406 407 5.816682 ACTGAACTTTATCCGGGAATCTTT 58.183 37.500 0.00 0.00 0.00 2.52
407 408 5.437191 ACTGAACTTTATCCGGGAATCTT 57.563 39.130 0.00 0.00 0.00 2.40
408 409 6.749036 ATACTGAACTTTATCCGGGAATCT 57.251 37.500 0.00 0.00 0.00 2.40
442 443 9.616634 CACGTATACGCCTTTATTTAGATTCTA 57.383 33.333 24.64 0.00 44.43 2.10
443 444 7.597743 CCACGTATACGCCTTTATTTAGATTCT 59.402 37.037 24.64 0.00 44.43 2.40
444 445 7.148689 CCCACGTATACGCCTTTATTTAGATTC 60.149 40.741 24.64 0.00 44.43 2.52
445 446 6.647895 CCCACGTATACGCCTTTATTTAGATT 59.352 38.462 24.64 0.00 44.43 2.40
446 447 6.161381 CCCACGTATACGCCTTTATTTAGAT 58.839 40.000 24.64 0.00 44.43 1.98
447 448 5.531634 CCCACGTATACGCCTTTATTTAGA 58.468 41.667 24.64 0.00 44.43 2.10
448 449 4.151157 GCCCACGTATACGCCTTTATTTAG 59.849 45.833 24.64 3.86 44.43 1.85
449 450 4.057432 GCCCACGTATACGCCTTTATTTA 58.943 43.478 24.64 0.00 44.43 1.40
450 451 2.874086 GCCCACGTATACGCCTTTATTT 59.126 45.455 24.64 0.00 44.43 1.40
451 452 2.486918 GCCCACGTATACGCCTTTATT 58.513 47.619 24.64 0.54 44.43 1.40
452 453 1.603678 CGCCCACGTATACGCCTTTAT 60.604 52.381 24.64 1.32 44.43 1.40
453 454 0.248990 CGCCCACGTATACGCCTTTA 60.249 55.000 24.64 0.00 44.43 1.85
454 455 1.519898 CGCCCACGTATACGCCTTT 60.520 57.895 24.64 2.51 44.43 3.11
455 456 2.105528 CGCCCACGTATACGCCTT 59.894 61.111 24.64 2.91 44.43 4.35
456 457 3.908081 CCGCCCACGTATACGCCT 61.908 66.667 24.64 3.71 44.43 5.52
457 458 4.955774 CCCGCCCACGTATACGCC 62.956 72.222 24.64 9.96 44.43 5.68
459 460 4.210093 TGCCCGCCCACGTATACG 62.210 66.667 23.24 23.24 46.33 3.06
460 461 2.279918 CTGCCCGCCCACGTATAC 60.280 66.667 0.00 0.00 37.70 1.47
461 462 3.542676 CCTGCCCGCCCACGTATA 61.543 66.667 0.00 0.00 37.70 1.47
475 476 2.614013 AAGTAGTGGGGCCCCCTG 60.614 66.667 38.81 0.00 45.70 4.45
476 477 2.286197 GAAGTAGTGGGGCCCCCT 60.286 66.667 38.81 32.85 45.70 4.79
477 478 1.923006 GAAGAAGTAGTGGGGCCCCC 61.923 65.000 38.81 28.05 45.71 5.40
478 479 1.205460 TGAAGAAGTAGTGGGGCCCC 61.205 60.000 36.14 36.14 0.00 5.80
479 480 0.919710 ATGAAGAAGTAGTGGGGCCC 59.080 55.000 18.17 18.17 0.00 5.80
480 481 2.808906 AATGAAGAAGTAGTGGGGCC 57.191 50.000 0.00 0.00 0.00 5.80
481 482 4.200092 CCTAAATGAAGAAGTAGTGGGGC 58.800 47.826 0.00 0.00 0.00 5.80
482 483 4.385310 CCCCTAAATGAAGAAGTAGTGGGG 60.385 50.000 0.00 0.00 43.65 4.96
483 484 4.385310 CCCCCTAAATGAAGAAGTAGTGGG 60.385 50.000 0.00 0.00 0.00 4.61
484 485 4.781934 CCCCCTAAATGAAGAAGTAGTGG 58.218 47.826 0.00 0.00 0.00 4.00
504 505 0.323360 TGCTTATTGTGACAGCCCCC 60.323 55.000 0.00 0.00 32.11 5.40
505 506 0.811281 GTGCTTATTGTGACAGCCCC 59.189 55.000 0.00 0.00 32.11 5.80
506 507 1.533625 TGTGCTTATTGTGACAGCCC 58.466 50.000 0.00 0.00 32.11 5.19
507 508 2.095059 CCTTGTGCTTATTGTGACAGCC 60.095 50.000 0.00 0.00 32.11 4.85
515 516 6.040166 AGCCAAGAATATCCTTGTGCTTATTG 59.960 38.462 10.46 0.00 42.46 1.90
561 562 4.273480 TCTGCTATGCTAAAATTCTTCCGC 59.727 41.667 0.00 0.00 0.00 5.54
575 576 4.631377 TGACACAAGTGTAATCTGCTATGC 59.369 41.667 5.74 0.00 45.05 3.14
615 616 5.087323 TCCTGATGGTCTCTTGTTTCTAGT 58.913 41.667 0.00 0.00 34.23 2.57
717 1807 3.786516 TTTGTTCGGGTTTCCTGTTTC 57.213 42.857 0.00 0.00 0.00 2.78
719 1809 2.166870 GGTTTTGTTCGGGTTTCCTGTT 59.833 45.455 0.00 0.00 0.00 3.16
731 1821 1.408969 TCTTGGGCTGGGTTTTGTTC 58.591 50.000 0.00 0.00 0.00 3.18
905 2017 8.682936 AATAAGATTCTGCAAAGGAATACGAT 57.317 30.769 0.05 0.00 34.09 3.73
907 2019 7.012327 TGGAATAAGATTCTGCAAAGGAATACG 59.988 37.037 0.05 0.00 34.09 3.06
908 2020 8.131731 GTGGAATAAGATTCTGCAAAGGAATAC 58.868 37.037 0.05 0.00 34.09 1.89
909 2021 7.012327 CGTGGAATAAGATTCTGCAAAGGAATA 59.988 37.037 0.05 0.00 34.09 1.75
910 2022 6.183360 CGTGGAATAAGATTCTGCAAAGGAAT 60.183 38.462 0.00 0.00 36.29 3.01
946 2060 5.237996 GCGTGAGTCTTTAGTTTAGGGTTTT 59.762 40.000 0.00 0.00 0.00 2.43
1023 2154 2.037527 AGGTCGTCAGGGAGGTCC 59.962 66.667 0.00 0.00 0.00 4.46
1146 2277 3.755628 TGGTAGGAGCGCGTGTCC 61.756 66.667 18.77 18.77 0.00 4.02
1169 2302 3.530265 TGCCGTACAAATTATCGTCCT 57.470 42.857 0.00 0.00 0.00 3.85
1272 2405 0.111253 CCCATCTATGGCCTTCCACC 59.889 60.000 3.32 0.00 46.92 4.61
1475 2608 2.235650 CTGAGGCAGAGATTCTTGGACA 59.764 50.000 0.00 0.00 32.44 4.02
1566 2726 2.364842 AGATCCTGGAGCGGCACT 60.365 61.111 6.27 0.00 0.00 4.40
1770 2930 4.111016 TCTACGCCAGTCACGCCG 62.111 66.667 0.00 0.00 0.00 6.46
1771 2931 2.202623 CTCTACGCCAGTCACGCC 60.203 66.667 0.00 0.00 0.00 5.68
1772 2932 2.881352 GCTCTACGCCAGTCACGC 60.881 66.667 0.00 0.00 0.00 5.34
1773 2933 1.515088 CAGCTCTACGCCAGTCACG 60.515 63.158 0.00 0.00 40.39 4.35
1774 2934 1.153745 CCAGCTCTACGCCAGTCAC 60.154 63.158 0.00 0.00 40.39 3.67
1775 2935 1.304134 TCCAGCTCTACGCCAGTCA 60.304 57.895 0.00 0.00 40.39 3.41
1846 3006 0.031449 GCGGCTTGTGGTTTTAGCAA 59.969 50.000 0.00 0.00 36.64 3.91
1847 3007 1.103987 TGCGGCTTGTGGTTTTAGCA 61.104 50.000 0.00 0.00 36.64 3.49
1874 3037 3.191791 GGAGAAGTCTATATCCACTCGCC 59.808 52.174 0.00 0.00 0.00 5.54
1884 3047 3.242867 CATGCCAGGGGAGAAGTCTATA 58.757 50.000 0.00 0.00 0.00 1.31
1945 3111 0.096628 CTGAAGCTCGCAGCACATTC 59.903 55.000 10.16 6.38 45.56 2.67
2091 3259 1.264749 TGCTCCGTCCTGGCTTGTAT 61.265 55.000 0.00 0.00 37.80 2.29
2137 3305 3.415087 GGGGCAGCAGTGGAGGAT 61.415 66.667 0.00 0.00 0.00 3.24
2160 3328 1.300697 GTTGAGCCGGAGTTCACGT 60.301 57.895 5.05 0.00 32.35 4.49
2214 3382 0.752658 CATAGCACCCATCGTCCTCA 59.247 55.000 0.00 0.00 0.00 3.86
2216 3384 1.139058 GTTCATAGCACCCATCGTCCT 59.861 52.381 0.00 0.00 0.00 3.85
2577 3991 0.673985 GTGTTTCAAGGGGCAAGACC 59.326 55.000 0.00 0.00 37.93 3.85
2789 4256 4.754332 CAAGAAGAAATGCTTTGTTTGCG 58.246 39.130 0.00 0.00 36.83 4.85
2794 4261 3.801293 GCTGGCAAGAAGAAATGCTTTGT 60.801 43.478 0.00 0.00 42.20 2.83
2853 4406 7.668052 TGGAGCTAATTAAAAGCCTAAAACTGA 59.332 33.333 9.01 0.00 41.02 3.41
3000 4553 3.332761 TGTTTACTTTGAGCTTGTGCG 57.667 42.857 0.00 0.00 45.42 5.34
3114 4670 6.483974 ACCGTGTTACAATTACTGAACAATCA 59.516 34.615 0.00 0.00 33.82 2.57
3333 5083 2.824341 AGTCCGGAAGTTGACGAGTATT 59.176 45.455 5.23 0.00 36.61 1.89
3385 5141 0.531090 TACACCGAGCGCTTTTGTGT 60.531 50.000 30.13 30.13 42.38 3.72
3387 5143 0.949105 CCTACACCGAGCGCTTTTGT 60.949 55.000 13.26 17.34 0.00 2.83
3421 5177 3.293337 TCCGAGCTACAAGTATAAGCCA 58.707 45.455 0.00 0.00 36.92 4.75
3442 5198 2.038557 AGATCACGTGGCAGGTACTTTT 59.961 45.455 17.00 0.00 34.60 2.27
3472 5228 2.017049 AGTTATGGAGGCGTCAATTGC 58.983 47.619 8.91 0.00 0.00 3.56
3482 5238 2.383245 ATCGCCCGCAGTTATGGAGG 62.383 60.000 0.00 0.00 0.00 4.30
3489 5245 2.106683 GCTTACATCGCCCGCAGTT 61.107 57.895 0.00 0.00 0.00 3.16
3500 5256 0.898320 AGCAGACACTCGGCTTACAT 59.102 50.000 0.00 0.00 45.34 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.