Multiple sequence alignment - TraesCS3D01G404500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G404500 chr3D 100.000 2372 0 0 1 2372 518745697 518748068 0.000000e+00 4381.0
1 TraesCS3D01G404500 chr3D 95.185 270 12 1 2104 2372 230675506 230675775 2.180000e-115 425.0
2 TraesCS3D01G404500 chr3D 93.333 270 17 1 2104 2372 230683188 230683457 4.750000e-107 398.0
3 TraesCS3D01G404500 chr3D 93.040 273 14 4 2104 2372 162813627 162813898 6.140000e-106 394.0
4 TraesCS3D01G404500 chr3D 93.902 82 5 0 1880 1961 518747491 518747572 8.900000e-25 124.0
5 TraesCS3D01G404500 chr3D 93.902 82 5 0 1795 1876 518747576 518747657 8.900000e-25 124.0
6 TraesCS3D01G404500 chr6A 93.414 911 54 5 549 1457 508355021 508354115 0.000000e+00 1345.0
7 TraesCS3D01G404500 chr6A 91.328 911 73 5 549 1457 474746960 474747866 0.000000e+00 1240.0
8 TraesCS3D01G404500 chr6A 91.611 596 21 4 1535 2103 474747882 474748475 0.000000e+00 797.0
9 TraesCS3D01G404500 chr6A 95.692 441 17 2 1606 2046 508354001 508353563 0.000000e+00 708.0
10 TraesCS3D01G404500 chr6A 92.371 485 30 4 39 523 508355609 508355132 0.000000e+00 684.0
11 TraesCS3D01G404500 chr6A 91.476 481 32 6 41 520 474745738 474746210 0.000000e+00 652.0
12 TraesCS3D01G404500 chr6A 90.984 488 28 8 36 520 474746373 474746847 0.000000e+00 643.0
13 TraesCS3D01G404500 chr6A 79.953 429 54 18 1460 1858 102113708 102114134 1.070000e-73 287.0
14 TraesCS3D01G404500 chr6A 93.976 83 5 0 1794 1876 474748252 474748334 2.480000e-25 126.0
15 TraesCS3D01G404500 chr6A 94.595 74 3 1 1535 1607 508354099 508354026 1.930000e-21 113.0
16 TraesCS3D01G404500 chr6A 100.000 28 0 0 1500 1527 508354117 508354090 4.000000e-03 52.8
17 TraesCS3D01G404500 chr1B 85.006 847 75 17 549 1374 206426173 206425358 0.000000e+00 813.0
18 TraesCS3D01G404500 chr1B 87.054 672 33 11 1467 2103 206425345 206424693 0.000000e+00 710.0
19 TraesCS3D01G404500 chr1B 90.798 489 39 4 36 524 206426771 206426289 0.000000e+00 649.0
20 TraesCS3D01G404500 chr1B 79.953 429 54 20 1460 1858 319971007 319971433 1.070000e-73 287.0
21 TraesCS3D01G404500 chr1B 94.118 85 5 0 1880 1964 206425000 206424916 1.910000e-26 130.0
22 TraesCS3D01G404500 chr5B 84.948 485 59 8 40 524 17922376 17922846 1.650000e-131 479.0
23 TraesCS3D01G404500 chr5D 95.185 270 12 1 2103 2372 27031654 27031922 2.180000e-115 425.0
24 TraesCS3D01G404500 chr5D 94.796 269 13 1 2104 2372 27039415 27039682 3.650000e-113 418.0
25 TraesCS3D01G404500 chr5D 93.704 270 16 1 2104 2372 178096611 178096342 1.020000e-108 403.0
26 TraesCS3D01G404500 chr7B 83.264 478 56 16 29 505 581397857 581398311 3.650000e-113 418.0
27 TraesCS3D01G404500 chr5A 82.716 486 68 9 41 525 644923827 644924297 3.650000e-113 418.0
28 TraesCS3D01G404500 chr5A 82.402 483 60 17 24 505 400509487 400509029 4.750000e-107 398.0
29 TraesCS3D01G404500 chr7A 83.051 472 54 17 35 503 588267623 588268071 2.840000e-109 405.0
30 TraesCS3D01G404500 chr7A 83.226 465 54 16 42 505 588275296 588275737 2.840000e-109 405.0
31 TraesCS3D01G404500 chr7A 82.432 444 53 17 63 505 588281261 588281680 4.820000e-97 364.0
32 TraesCS3D01G404500 chr7D 93.704 270 16 1 2104 2372 288316846 288316577 1.020000e-108 403.0
33 TraesCS3D01G404500 chr6D 92.963 270 18 1 2104 2372 425874789 425875058 2.210000e-105 392.0
34 TraesCS3D01G404500 chr4D 92.251 271 19 1 2104 2372 61023112 61022842 1.330000e-102 383.0
35 TraesCS3D01G404500 chr4D 84.878 205 27 3 35 237 218258022 218257820 1.110000e-48 204.0
36 TraesCS3D01G404500 chr2A 79.487 429 56 18 1460 1858 665837195 665837621 2.320000e-70 276.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G404500 chr3D 518745697 518748068 2371 False 1543.00 4381 95.934667 1 2372 3 chr3D.!!$F4 2371
1 TraesCS3D01G404500 chr6A 474745738 474748475 2737 False 691.60 1240 91.875000 36 2103 5 chr6A.!!$F2 2067
2 TraesCS3D01G404500 chr6A 508353563 508355609 2046 True 580.56 1345 95.214400 39 2046 5 chr6A.!!$R1 2007
3 TraesCS3D01G404500 chr1B 206424693 206426771 2078 True 575.50 813 89.244000 36 2103 4 chr1B.!!$R1 2067

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.314935 TTCCGTAACACTGGGACGTC 59.685 55.0 7.13 7.13 34.81 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1438 2191 0.029035 CAAGATGCTTGGATCGCTGC 59.971 55.0 0.0 0.0 0.0 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.599558 TCTTCCGTAACACTGGGACG 59.400 55.000 0.00 0.00 36.36 4.79
20 21 0.316204 CTTCCGTAACACTGGGACGT 59.684 55.000 0.00 0.00 34.81 4.34
21 22 0.314935 TTCCGTAACACTGGGACGTC 59.685 55.000 7.13 7.13 34.81 4.34
22 23 1.080298 CCGTAACACTGGGACGTCC 60.080 63.158 27.04 27.04 34.81 4.79
23 24 1.530013 CCGTAACACTGGGACGTCCT 61.530 60.000 32.52 15.38 34.81 3.85
24 25 0.388134 CGTAACACTGGGACGTCCTG 60.388 60.000 32.52 24.82 39.98 3.86
25 26 0.677842 GTAACACTGGGACGTCCTGT 59.322 55.000 32.52 25.48 46.82 4.00
26 27 0.963962 TAACACTGGGACGTCCTGTC 59.036 55.000 32.52 17.67 44.51 3.51
34 35 3.514777 GACGTCCTGTCTTGATGCA 57.485 52.632 3.51 0.00 44.58 3.96
99 100 6.237901 TCTTAAAGCCACACAACAGATGTAT 58.762 36.000 0.00 0.00 41.46 2.29
104 105 3.273434 CCACACAACAGATGTATCCAGG 58.727 50.000 0.00 0.00 41.46 4.45
129 130 7.065443 GGTTGATTAGCACCGTTAGATTAAACT 59.935 37.037 0.00 0.00 0.00 2.66
184 185 2.357327 TCCCGAGTCAAATGTGTACG 57.643 50.000 0.00 0.00 0.00 3.67
217 218 1.668151 GACTGAACGCACTCCACCC 60.668 63.158 0.00 0.00 0.00 4.61
237 238 0.800012 GCGGAGTAAAATTCCACGCA 59.200 50.000 0.00 0.00 44.32 5.24
258 259 1.224069 CGGCTCACGCTAATCCCATG 61.224 60.000 0.00 0.00 36.09 3.66
259 260 1.510480 GGCTCACGCTAATCCCATGC 61.510 60.000 0.00 0.00 36.09 4.06
260 261 0.815213 GCTCACGCTAATCCCATGCA 60.815 55.000 0.00 0.00 0.00 3.96
261 262 1.888215 CTCACGCTAATCCCATGCAT 58.112 50.000 0.00 0.00 0.00 3.96
476 477 1.657181 GCCGAAACAACAAGCACCG 60.657 57.895 0.00 0.00 0.00 4.94
523 531 0.463204 AGAGATGAGCCACACATCCG 59.537 55.000 0.00 0.00 43.30 4.18
525 533 0.977627 AGATGAGCCACACATCCGGA 60.978 55.000 6.61 6.61 43.30 5.14
526 534 0.531532 GATGAGCCACACATCCGGAG 60.532 60.000 11.34 4.72 38.40 4.63
568 661 0.737715 GATGCGAGCGAGTTTCCTGT 60.738 55.000 0.00 0.00 0.00 4.00
727 1458 1.884075 CGGGGACATCCTCAACGTCA 61.884 60.000 0.00 0.00 35.80 4.35
776 1507 4.458397 AGGAAATCAGCACAATGATCGAT 58.542 39.130 0.00 0.00 39.00 3.59
897 1633 1.153168 CATCGTCCCATCCGGCTTT 60.153 57.895 0.00 0.00 0.00 3.51
1093 1831 3.376935 CTCCCGGTGCTGCGATTCT 62.377 63.158 0.00 0.00 0.00 2.40
1200 1938 4.704833 GGCTGCTTCGTGCCTCCA 62.705 66.667 0.00 0.00 45.26 3.86
1229 1982 2.094752 GTGGAGCAAACATAAATGCCGT 60.095 45.455 0.00 0.00 43.57 5.68
1346 2099 1.134367 CATAGCCGGAGTTCGAGTTCA 59.866 52.381 5.05 0.00 42.43 3.18
1374 2127 2.737830 GAGAGGACGCCATAGCCC 59.262 66.667 0.00 0.00 34.57 5.19
1438 2191 2.048877 AGTTAACCACGCCGACGG 60.049 61.111 10.29 10.29 46.04 4.79
1439 2192 3.781162 GTTAACCACGCCGACGGC 61.781 66.667 29.10 29.10 46.75 5.68
1454 2207 2.890109 CGGCAGCGATCCAAGCATC 61.890 63.158 0.00 0.00 37.01 3.91
1455 2208 1.525535 GGCAGCGATCCAAGCATCT 60.526 57.895 0.00 0.00 37.01 2.90
1456 2209 1.099879 GGCAGCGATCCAAGCATCTT 61.100 55.000 0.00 0.00 37.01 2.40
1457 2210 0.029035 GCAGCGATCCAAGCATCTTG 59.971 55.000 0.00 0.00 37.01 3.02
1458 2211 0.029035 CAGCGATCCAAGCATCTTGC 59.971 55.000 1.25 0.00 45.46 4.01
1580 2333 7.067737 GCCAATTACTATTTGCAGGTTAGGTAA 59.932 37.037 0.00 0.00 33.72 2.85
1878 2662 6.496565 ACCATGATCCACTGAACCAAAATTAA 59.503 34.615 0.00 0.00 0.00 1.40
2039 2823 7.254932 GGTTCTGCACTGATTTAGTCATATTCC 60.255 40.741 0.00 0.00 37.60 3.01
2103 2890 4.792068 TGCATTTTTATCCCGAATCTCCT 58.208 39.130 0.00 0.00 0.00 3.69
2104 2891 4.580167 TGCATTTTTATCCCGAATCTCCTG 59.420 41.667 0.00 0.00 0.00 3.86
2105 2892 4.580580 GCATTTTTATCCCGAATCTCCTGT 59.419 41.667 0.00 0.00 0.00 4.00
2106 2893 5.763204 GCATTTTTATCCCGAATCTCCTGTA 59.237 40.000 0.00 0.00 0.00 2.74
2107 2894 6.262273 GCATTTTTATCCCGAATCTCCTGTAA 59.738 38.462 0.00 0.00 0.00 2.41
2108 2895 7.639945 CATTTTTATCCCGAATCTCCTGTAAC 58.360 38.462 0.00 0.00 0.00 2.50
2109 2896 4.579454 TTATCCCGAATCTCCTGTAACG 57.421 45.455 0.00 0.00 0.00 3.18
2110 2897 1.843368 TCCCGAATCTCCTGTAACGT 58.157 50.000 0.00 0.00 0.00 3.99
2111 2898 1.747355 TCCCGAATCTCCTGTAACGTC 59.253 52.381 0.00 0.00 0.00 4.34
2112 2899 1.202382 CCCGAATCTCCTGTAACGTCC 60.202 57.143 0.00 0.00 0.00 4.79
2113 2900 1.202382 CCGAATCTCCTGTAACGTCCC 60.202 57.143 0.00 0.00 0.00 4.46
2114 2901 1.475280 CGAATCTCCTGTAACGTCCCA 59.525 52.381 0.00 0.00 0.00 4.37
2115 2902 2.094390 CGAATCTCCTGTAACGTCCCAA 60.094 50.000 0.00 0.00 0.00 4.12
2116 2903 3.522553 GAATCTCCTGTAACGTCCCAAG 58.477 50.000 0.00 0.00 0.00 3.61
2117 2904 2.297698 TCTCCTGTAACGTCCCAAGA 57.702 50.000 0.00 0.00 0.00 3.02
2118 2905 1.891150 TCTCCTGTAACGTCCCAAGAC 59.109 52.381 0.00 0.00 39.83 3.01
2119 2906 0.971386 TCCTGTAACGTCCCAAGACC 59.029 55.000 0.00 0.00 40.12 3.85
2120 2907 0.389426 CCTGTAACGTCCCAAGACCG 60.389 60.000 0.00 0.00 40.12 4.79
2121 2908 0.599558 CTGTAACGTCCCAAGACCGA 59.400 55.000 0.00 0.00 40.12 4.69
2122 2909 0.314935 TGTAACGTCCCAAGACCGAC 59.685 55.000 0.00 0.00 40.12 4.79
2125 2912 4.052229 CGTCCCAAGACCGACGCT 62.052 66.667 0.00 0.00 44.54 5.07
2126 2913 2.126031 GTCCCAAGACCGACGCTC 60.126 66.667 0.00 0.00 37.00 5.03
2127 2914 3.379445 TCCCAAGACCGACGCTCC 61.379 66.667 0.00 0.00 0.00 4.70
2128 2915 3.691342 CCCAAGACCGACGCTCCA 61.691 66.667 0.00 0.00 0.00 3.86
2129 2916 2.342279 CCAAGACCGACGCTCCAA 59.658 61.111 0.00 0.00 0.00 3.53
2130 2917 1.301401 CCAAGACCGACGCTCCAAA 60.301 57.895 0.00 0.00 0.00 3.28
2131 2918 1.566018 CCAAGACCGACGCTCCAAAC 61.566 60.000 0.00 0.00 0.00 2.93
2132 2919 1.663702 AAGACCGACGCTCCAAACG 60.664 57.895 0.00 0.00 0.00 3.60
2133 2920 3.774702 GACCGACGCTCCAAACGC 61.775 66.667 0.00 0.00 0.00 4.84
2136 2923 3.041940 CGACGCTCCAAACGCCTT 61.042 61.111 0.00 0.00 0.00 4.35
2137 2924 2.861006 GACGCTCCAAACGCCTTC 59.139 61.111 0.00 0.00 0.00 3.46
2138 2925 2.668550 ACGCTCCAAACGCCTTCC 60.669 61.111 0.00 0.00 0.00 3.46
2139 2926 2.668212 CGCTCCAAACGCCTTCCA 60.668 61.111 0.00 0.00 0.00 3.53
2140 2927 2.040544 CGCTCCAAACGCCTTCCAT 61.041 57.895 0.00 0.00 0.00 3.41
2141 2928 0.742990 CGCTCCAAACGCCTTCCATA 60.743 55.000 0.00 0.00 0.00 2.74
2142 2929 1.680338 GCTCCAAACGCCTTCCATAT 58.320 50.000 0.00 0.00 0.00 1.78
2143 2930 2.805295 CGCTCCAAACGCCTTCCATATA 60.805 50.000 0.00 0.00 0.00 0.86
2144 2931 3.412386 GCTCCAAACGCCTTCCATATAT 58.588 45.455 0.00 0.00 0.00 0.86
2145 2932 3.821033 GCTCCAAACGCCTTCCATATATT 59.179 43.478 0.00 0.00 0.00 1.28
2146 2933 4.278419 GCTCCAAACGCCTTCCATATATTT 59.722 41.667 0.00 0.00 0.00 1.40
2147 2934 5.562890 GCTCCAAACGCCTTCCATATATTTC 60.563 44.000 0.00 0.00 0.00 2.17
2148 2935 4.513692 TCCAAACGCCTTCCATATATTTCG 59.486 41.667 0.00 0.00 0.00 3.46
2149 2936 4.274950 CCAAACGCCTTCCATATATTTCGT 59.725 41.667 0.00 0.00 0.00 3.85
2150 2937 5.204833 CAAACGCCTTCCATATATTTCGTG 58.795 41.667 0.00 0.00 0.00 4.35
2151 2938 4.067972 ACGCCTTCCATATATTTCGTGT 57.932 40.909 0.00 0.00 0.00 4.49
2152 2939 4.448210 ACGCCTTCCATATATTTCGTGTT 58.552 39.130 0.00 0.00 0.00 3.32
2153 2940 4.510340 ACGCCTTCCATATATTTCGTGTTC 59.490 41.667 0.00 0.00 0.00 3.18
2154 2941 4.376008 CGCCTTCCATATATTTCGTGTTCG 60.376 45.833 0.00 0.00 38.55 3.95
2155 2942 4.084013 GCCTTCCATATATTTCGTGTTCGG 60.084 45.833 0.00 0.00 37.69 4.30
2156 2943 4.084013 CCTTCCATATATTTCGTGTTCGGC 60.084 45.833 0.00 0.00 37.69 5.54
2157 2944 4.061357 TCCATATATTTCGTGTTCGGCA 57.939 40.909 0.00 0.00 37.69 5.69
2158 2945 4.443621 TCCATATATTTCGTGTTCGGCAA 58.556 39.130 0.00 0.00 37.69 4.52
2159 2946 4.509970 TCCATATATTTCGTGTTCGGCAAG 59.490 41.667 0.00 0.00 37.69 4.01
2160 2947 4.272504 CCATATATTTCGTGTTCGGCAAGT 59.727 41.667 0.00 0.00 37.69 3.16
2161 2948 3.740044 ATATTTCGTGTTCGGCAAGTG 57.260 42.857 0.00 0.00 37.69 3.16
2162 2949 1.305201 ATTTCGTGTTCGGCAAGTGT 58.695 45.000 0.00 0.00 37.69 3.55
2163 2950 1.088306 TTTCGTGTTCGGCAAGTGTT 58.912 45.000 0.00 0.00 37.69 3.32
2164 2951 1.088306 TTCGTGTTCGGCAAGTGTTT 58.912 45.000 0.00 0.00 37.69 2.83
2165 2952 1.088306 TCGTGTTCGGCAAGTGTTTT 58.912 45.000 0.00 0.00 37.69 2.43
2166 2953 2.277969 TCGTGTTCGGCAAGTGTTTTA 58.722 42.857 0.00 0.00 37.69 1.52
2167 2954 2.873472 TCGTGTTCGGCAAGTGTTTTAT 59.127 40.909 0.00 0.00 37.69 1.40
2168 2955 3.312973 TCGTGTTCGGCAAGTGTTTTATT 59.687 39.130 0.00 0.00 37.69 1.40
2169 2956 4.039032 CGTGTTCGGCAAGTGTTTTATTT 58.961 39.130 0.00 0.00 0.00 1.40
2170 2957 4.085822 CGTGTTCGGCAAGTGTTTTATTTG 60.086 41.667 0.00 0.00 0.00 2.32
2171 2958 4.801516 GTGTTCGGCAAGTGTTTTATTTGT 59.198 37.500 0.00 0.00 0.00 2.83
2172 2959 4.800993 TGTTCGGCAAGTGTTTTATTTGTG 59.199 37.500 0.00 0.00 0.00 3.33
2173 2960 4.640789 TCGGCAAGTGTTTTATTTGTGT 57.359 36.364 0.00 0.00 0.00 3.72
2174 2961 4.355437 TCGGCAAGTGTTTTATTTGTGTG 58.645 39.130 0.00 0.00 0.00 3.82
2175 2962 4.109050 CGGCAAGTGTTTTATTTGTGTGT 58.891 39.130 0.00 0.00 0.00 3.72
2176 2963 4.564769 CGGCAAGTGTTTTATTTGTGTGTT 59.435 37.500 0.00 0.00 0.00 3.32
2177 2964 5.499971 CGGCAAGTGTTTTATTTGTGTGTTG 60.500 40.000 0.00 0.00 0.00 3.33
2178 2965 5.254842 GCAAGTGTTTTATTTGTGTGTTGC 58.745 37.500 0.00 0.00 0.00 4.17
2179 2966 5.163913 GCAAGTGTTTTATTTGTGTGTTGCA 60.164 36.000 0.00 0.00 37.20 4.08
2180 2967 6.456718 GCAAGTGTTTTATTTGTGTGTTGCAT 60.457 34.615 0.00 0.00 37.20 3.96
2181 2968 7.462731 CAAGTGTTTTATTTGTGTGTTGCATT 58.537 30.769 0.00 0.00 0.00 3.56
2182 2969 7.232945 AGTGTTTTATTTGTGTGTTGCATTC 57.767 32.000 0.00 0.00 0.00 2.67
2183 2970 6.815641 AGTGTTTTATTTGTGTGTTGCATTCA 59.184 30.769 0.00 0.00 0.00 2.57
2184 2971 7.495279 AGTGTTTTATTTGTGTGTTGCATTCAT 59.505 29.630 0.00 0.00 0.00 2.57
2185 2972 7.793427 GTGTTTTATTTGTGTGTTGCATTCATC 59.207 33.333 0.00 0.00 0.00 2.92
2186 2973 7.493645 TGTTTTATTTGTGTGTTGCATTCATCA 59.506 29.630 0.00 0.00 0.00 3.07
2187 2974 8.497554 GTTTTATTTGTGTGTTGCATTCATCAT 58.502 29.630 0.00 0.00 0.00 2.45
2188 2975 7.815398 TTATTTGTGTGTTGCATTCATCATC 57.185 32.000 0.00 0.00 0.00 2.92
2189 2976 3.474693 TGTGTGTTGCATTCATCATCG 57.525 42.857 0.00 0.00 0.00 3.84
2190 2977 2.179589 GTGTGTTGCATTCATCATCGC 58.820 47.619 0.00 0.00 0.00 4.58
2191 2978 1.811359 TGTGTTGCATTCATCATCGCA 59.189 42.857 0.00 0.00 0.00 5.10
2192 2979 2.424246 TGTGTTGCATTCATCATCGCAT 59.576 40.909 0.00 0.00 33.71 4.73
2193 2980 3.119424 TGTGTTGCATTCATCATCGCATT 60.119 39.130 0.00 0.00 33.71 3.56
2194 2981 4.096081 TGTGTTGCATTCATCATCGCATTA 59.904 37.500 0.00 0.00 33.71 1.90
2195 2982 5.217393 GTGTTGCATTCATCATCGCATTAT 58.783 37.500 0.00 0.00 33.71 1.28
2196 2983 5.688621 GTGTTGCATTCATCATCGCATTATT 59.311 36.000 0.00 0.00 33.71 1.40
2197 2984 6.199531 GTGTTGCATTCATCATCGCATTATTT 59.800 34.615 0.00 0.00 33.71 1.40
2198 2985 6.199342 TGTTGCATTCATCATCGCATTATTTG 59.801 34.615 0.00 0.00 33.71 2.32
2212 2999 5.319232 CATTATTTGCATTGAATCGGCAC 57.681 39.130 0.00 0.00 37.26 5.01
2213 3000 4.717233 TTATTTGCATTGAATCGGCACT 57.283 36.364 0.00 0.00 37.26 4.40
2214 3001 3.598019 ATTTGCATTGAATCGGCACTT 57.402 38.095 0.00 0.00 37.26 3.16
2215 3002 2.634982 TTGCATTGAATCGGCACTTC 57.365 45.000 0.00 0.00 37.26 3.01
2216 3003 0.447406 TGCATTGAATCGGCACTTCG 59.553 50.000 0.00 0.00 31.58 3.79
2217 3004 0.447801 GCATTGAATCGGCACTTCGT 59.552 50.000 0.00 0.00 0.00 3.85
2218 3005 1.135689 GCATTGAATCGGCACTTCGTT 60.136 47.619 0.00 0.00 0.00 3.85
2219 3006 2.508867 CATTGAATCGGCACTTCGTTG 58.491 47.619 0.00 0.00 0.00 4.10
2220 3007 0.237235 TTGAATCGGCACTTCGTTGC 59.763 50.000 0.00 0.00 42.18 4.17
2226 3013 3.253955 GCACTTCGTTGCCGTCAT 58.746 55.556 0.00 0.00 36.42 3.06
2227 3014 1.154413 GCACTTCGTTGCCGTCATG 60.154 57.895 0.00 0.00 36.42 3.07
2228 3015 1.841663 GCACTTCGTTGCCGTCATGT 61.842 55.000 0.00 0.00 36.42 3.21
2229 3016 0.586319 CACTTCGTTGCCGTCATGTT 59.414 50.000 0.00 0.00 35.01 2.71
2230 3017 1.002900 CACTTCGTTGCCGTCATGTTT 60.003 47.619 0.00 0.00 35.01 2.83
2231 3018 1.673920 ACTTCGTTGCCGTCATGTTTT 59.326 42.857 0.00 0.00 35.01 2.43
2232 3019 2.873472 ACTTCGTTGCCGTCATGTTTTA 59.127 40.909 0.00 0.00 35.01 1.52
2233 3020 3.312973 ACTTCGTTGCCGTCATGTTTTAA 59.687 39.130 0.00 0.00 35.01 1.52
2234 3021 3.965292 TCGTTGCCGTCATGTTTTAAA 57.035 38.095 0.00 0.00 35.01 1.52
2235 3022 4.288670 TCGTTGCCGTCATGTTTTAAAA 57.711 36.364 0.00 0.00 35.01 1.52
2236 3023 4.036352 TCGTTGCCGTCATGTTTTAAAAC 58.964 39.130 21.66 21.66 36.04 2.43
2237 3024 4.039032 CGTTGCCGTCATGTTTTAAAACT 58.961 39.130 26.76 13.07 39.59 2.66
2238 3025 4.501198 CGTTGCCGTCATGTTTTAAAACTT 59.499 37.500 26.76 19.78 39.59 2.66
2239 3026 5.553581 CGTTGCCGTCATGTTTTAAAACTTG 60.554 40.000 28.30 28.30 42.25 3.16
2240 3027 3.799420 TGCCGTCATGTTTTAAAACTTGC 59.201 39.130 28.92 23.86 41.29 4.01
2241 3028 3.799420 GCCGTCATGTTTTAAAACTTGCA 59.201 39.130 28.92 19.86 41.29 4.08
2242 3029 4.447389 GCCGTCATGTTTTAAAACTTGCAT 59.553 37.500 28.92 15.49 41.29 3.96
2243 3030 5.050431 GCCGTCATGTTTTAAAACTTGCATT 60.050 36.000 28.92 10.09 41.29 3.56
2244 3031 6.580476 CCGTCATGTTTTAAAACTTGCATTC 58.420 36.000 28.92 20.52 41.29 2.67
2245 3032 6.281056 CGTCATGTTTTAAAACTTGCATTCG 58.719 36.000 28.92 24.85 41.29 3.34
2246 3033 6.064525 GTCATGTTTTAAAACTTGCATTCGC 58.935 36.000 28.92 16.52 41.29 4.70
2247 3034 5.982516 TCATGTTTTAAAACTTGCATTCGCT 59.017 32.000 28.92 5.72 41.29 4.93
2248 3035 5.881637 TGTTTTAAAACTTGCATTCGCTC 57.118 34.783 26.76 1.81 39.59 5.03
2249 3036 4.439449 TGTTTTAAAACTTGCATTCGCTCG 59.561 37.500 26.76 0.00 39.59 5.03
2250 3037 3.889196 TTAAAACTTGCATTCGCTCGT 57.111 38.095 0.00 0.00 39.64 4.18
2251 3038 2.316119 AAAACTTGCATTCGCTCGTC 57.684 45.000 0.00 0.00 39.64 4.20
2252 3039 0.163788 AAACTTGCATTCGCTCGTCG 59.836 50.000 0.00 0.00 39.64 5.12
2253 3040 0.944311 AACTTGCATTCGCTCGTCGT 60.944 50.000 0.00 0.00 39.64 4.34
2254 3041 0.944311 ACTTGCATTCGCTCGTCGTT 60.944 50.000 0.00 0.00 39.64 3.85
2255 3042 0.517132 CTTGCATTCGCTCGTCGTTG 60.517 55.000 0.00 2.06 39.64 4.10
2256 3043 0.941936 TTGCATTCGCTCGTCGTTGA 60.942 50.000 0.00 0.00 39.64 3.18
2257 3044 0.735978 TGCATTCGCTCGTCGTTGAT 60.736 50.000 0.00 0.00 39.64 2.57
2258 3045 0.314578 GCATTCGCTCGTCGTTGATG 60.315 55.000 0.00 5.16 39.67 3.07
2259 3046 0.992072 CATTCGCTCGTCGTTGATGT 59.008 50.000 0.00 0.00 39.67 3.06
2260 3047 1.390123 CATTCGCTCGTCGTTGATGTT 59.610 47.619 0.00 0.00 39.67 2.71
2261 3048 1.493772 TTCGCTCGTCGTTGATGTTT 58.506 45.000 0.00 0.00 39.67 2.83
2262 3049 1.057636 TCGCTCGTCGTTGATGTTTC 58.942 50.000 0.00 0.00 39.67 2.78
2263 3050 1.060713 CGCTCGTCGTTGATGTTTCT 58.939 50.000 0.00 0.00 0.00 2.52
2264 3051 1.057847 CGCTCGTCGTTGATGTTTCTC 59.942 52.381 0.00 0.00 0.00 2.87
2265 3052 1.390463 GCTCGTCGTTGATGTTTCTCC 59.610 52.381 0.00 0.00 0.00 3.71
2266 3053 1.993370 CTCGTCGTTGATGTTTCTCCC 59.007 52.381 0.00 0.00 0.00 4.30
2267 3054 1.616865 TCGTCGTTGATGTTTCTCCCT 59.383 47.619 0.00 0.00 0.00 4.20
2268 3055 2.036733 TCGTCGTTGATGTTTCTCCCTT 59.963 45.455 0.00 0.00 0.00 3.95
2269 3056 2.806244 CGTCGTTGATGTTTCTCCCTTT 59.194 45.455 0.00 0.00 0.00 3.11
2270 3057 3.363970 CGTCGTTGATGTTTCTCCCTTTG 60.364 47.826 0.00 0.00 0.00 2.77
2271 3058 2.552315 TCGTTGATGTTTCTCCCTTTGC 59.448 45.455 0.00 0.00 0.00 3.68
2272 3059 2.351738 CGTTGATGTTTCTCCCTTTGCC 60.352 50.000 0.00 0.00 0.00 4.52
2273 3060 2.893489 GTTGATGTTTCTCCCTTTGCCT 59.107 45.455 0.00 0.00 0.00 4.75
2274 3061 3.243359 TGATGTTTCTCCCTTTGCCTT 57.757 42.857 0.00 0.00 0.00 4.35
2275 3062 3.157087 TGATGTTTCTCCCTTTGCCTTC 58.843 45.455 0.00 0.00 0.00 3.46
2276 3063 2.746279 TGTTTCTCCCTTTGCCTTCA 57.254 45.000 0.00 0.00 0.00 3.02
2277 3064 3.243359 TGTTTCTCCCTTTGCCTTCAT 57.757 42.857 0.00 0.00 0.00 2.57
2278 3065 3.157087 TGTTTCTCCCTTTGCCTTCATC 58.843 45.455 0.00 0.00 0.00 2.92
2279 3066 3.157087 GTTTCTCCCTTTGCCTTCATCA 58.843 45.455 0.00 0.00 0.00 3.07
2280 3067 2.496899 TCTCCCTTTGCCTTCATCAC 57.503 50.000 0.00 0.00 0.00 3.06
2281 3068 1.004745 TCTCCCTTTGCCTTCATCACC 59.995 52.381 0.00 0.00 0.00 4.02
2282 3069 1.005215 CTCCCTTTGCCTTCATCACCT 59.995 52.381 0.00 0.00 0.00 4.00
2283 3070 1.428912 TCCCTTTGCCTTCATCACCTT 59.571 47.619 0.00 0.00 0.00 3.50
2284 3071 1.821136 CCCTTTGCCTTCATCACCTTC 59.179 52.381 0.00 0.00 0.00 3.46
2285 3072 1.821136 CCTTTGCCTTCATCACCTTCC 59.179 52.381 0.00 0.00 0.00 3.46
2286 3073 1.821136 CTTTGCCTTCATCACCTTCCC 59.179 52.381 0.00 0.00 0.00 3.97
2287 3074 1.075601 TTGCCTTCATCACCTTCCCT 58.924 50.000 0.00 0.00 0.00 4.20
2288 3075 1.075601 TGCCTTCATCACCTTCCCTT 58.924 50.000 0.00 0.00 0.00 3.95
2289 3076 1.272092 TGCCTTCATCACCTTCCCTTG 60.272 52.381 0.00 0.00 0.00 3.61
2290 3077 1.957113 GCCTTCATCACCTTCCCTTGG 60.957 57.143 0.00 0.00 0.00 3.61
2291 3078 1.635487 CCTTCATCACCTTCCCTTGGA 59.365 52.381 0.00 0.00 0.00 3.53
2292 3079 2.243221 CCTTCATCACCTTCCCTTGGAT 59.757 50.000 0.00 0.00 0.00 3.41
2293 3080 3.549794 CTTCATCACCTTCCCTTGGATC 58.450 50.000 0.00 0.00 0.00 3.36
2294 3081 1.486310 TCATCACCTTCCCTTGGATCG 59.514 52.381 0.00 0.00 0.00 3.69
2295 3082 0.181350 ATCACCTTCCCTTGGATCGC 59.819 55.000 0.00 0.00 0.00 4.58
2296 3083 1.452108 CACCTTCCCTTGGATCGCC 60.452 63.158 0.00 0.00 0.00 5.54
2297 3084 1.616628 ACCTTCCCTTGGATCGCCT 60.617 57.895 0.00 0.00 34.31 5.52
2298 3085 1.208165 ACCTTCCCTTGGATCGCCTT 61.208 55.000 0.00 0.00 34.31 4.35
2299 3086 0.749454 CCTTCCCTTGGATCGCCTTG 60.749 60.000 0.00 0.00 34.31 3.61
2300 3087 1.378514 TTCCCTTGGATCGCCTTGC 60.379 57.895 0.00 0.00 34.31 4.01
2301 3088 2.830370 CCCTTGGATCGCCTTGCC 60.830 66.667 0.00 0.00 34.31 4.52
2302 3089 2.273449 CCTTGGATCGCCTTGCCT 59.727 61.111 0.00 0.00 34.31 4.75
2303 3090 2.117156 CCTTGGATCGCCTTGCCTG 61.117 63.158 0.00 0.00 34.31 4.85
2304 3091 2.751436 TTGGATCGCCTTGCCTGC 60.751 61.111 0.00 0.00 34.31 4.85
2310 3097 4.389576 CGCCTTGCCTGCGTTGAC 62.390 66.667 3.73 0.00 46.59 3.18
2311 3098 4.043200 GCCTTGCCTGCGTTGACC 62.043 66.667 0.00 0.00 0.00 4.02
2312 3099 3.726517 CCTTGCCTGCGTTGACCG 61.727 66.667 0.00 0.00 40.40 4.79
2313 3100 2.972505 CTTGCCTGCGTTGACCGT 60.973 61.111 0.00 0.00 39.32 4.83
2314 3101 2.515057 TTGCCTGCGTTGACCGTT 60.515 55.556 0.00 0.00 39.32 4.44
2315 3102 2.443957 CTTGCCTGCGTTGACCGTTC 62.444 60.000 0.00 0.00 39.32 3.95
2316 3103 3.723348 GCCTGCGTTGACCGTTCC 61.723 66.667 0.00 0.00 39.32 3.62
2317 3104 2.280524 CCTGCGTTGACCGTTCCA 60.281 61.111 0.00 0.00 39.32 3.53
2318 3105 2.317609 CCTGCGTTGACCGTTCCAG 61.318 63.158 0.00 0.00 39.32 3.86
2319 3106 1.300620 CTGCGTTGACCGTTCCAGA 60.301 57.895 0.00 0.00 39.32 3.86
2320 3107 1.557443 CTGCGTTGACCGTTCCAGAC 61.557 60.000 0.00 0.00 39.32 3.51
2321 3108 2.315386 GCGTTGACCGTTCCAGACC 61.315 63.158 0.00 0.00 39.32 3.85
2322 3109 1.068417 CGTTGACCGTTCCAGACCA 59.932 57.895 0.00 0.00 0.00 4.02
2323 3110 0.531090 CGTTGACCGTTCCAGACCAA 60.531 55.000 0.00 0.00 0.00 3.67
2324 3111 1.876416 CGTTGACCGTTCCAGACCAAT 60.876 52.381 0.00 0.00 0.00 3.16
2325 3112 1.804748 GTTGACCGTTCCAGACCAATC 59.195 52.381 0.00 0.00 0.00 2.67
2326 3113 0.037697 TGACCGTTCCAGACCAATCG 60.038 55.000 0.00 0.00 0.00 3.34
2327 3114 0.739813 GACCGTTCCAGACCAATCGG 60.740 60.000 0.00 0.00 42.94 4.18
2328 3115 1.449601 CCGTTCCAGACCAATCGGG 60.450 63.158 0.00 0.00 41.30 5.14
2338 3125 3.694889 CCAATCGGGTTTTCGCTTC 57.305 52.632 0.00 0.00 0.00 3.86
2339 3126 0.170339 CCAATCGGGTTTTCGCTTCC 59.830 55.000 0.00 0.00 0.00 3.46
2340 3127 0.170339 CAATCGGGTTTTCGCTTCCC 59.830 55.000 0.00 0.00 37.98 3.97
2341 3128 0.037734 AATCGGGTTTTCGCTTCCCT 59.962 50.000 0.00 0.00 39.10 4.20
2342 3129 0.392595 ATCGGGTTTTCGCTTCCCTC 60.393 55.000 0.00 0.00 39.10 4.30
2343 3130 1.003718 CGGGTTTTCGCTTCCCTCT 60.004 57.895 0.00 0.00 39.10 3.69
2344 3131 0.605589 CGGGTTTTCGCTTCCCTCTT 60.606 55.000 0.00 0.00 39.10 2.85
2345 3132 0.881796 GGGTTTTCGCTTCCCTCTTG 59.118 55.000 0.00 0.00 38.29 3.02
2346 3133 1.544759 GGGTTTTCGCTTCCCTCTTGA 60.545 52.381 0.00 0.00 38.29 3.02
2347 3134 1.535896 GGTTTTCGCTTCCCTCTTGAC 59.464 52.381 0.00 0.00 0.00 3.18
2348 3135 1.535896 GTTTTCGCTTCCCTCTTGACC 59.464 52.381 0.00 0.00 0.00 4.02
2349 3136 0.762418 TTTCGCTTCCCTCTTGACCA 59.238 50.000 0.00 0.00 0.00 4.02
2350 3137 0.984230 TTCGCTTCCCTCTTGACCAT 59.016 50.000 0.00 0.00 0.00 3.55
2351 3138 0.250234 TCGCTTCCCTCTTGACCATG 59.750 55.000 0.00 0.00 0.00 3.66
2352 3139 0.250234 CGCTTCCCTCTTGACCATGA 59.750 55.000 0.00 0.00 0.00 3.07
2353 3140 1.743996 GCTTCCCTCTTGACCATGAC 58.256 55.000 0.00 0.00 0.00 3.06
2354 3141 1.680249 GCTTCCCTCTTGACCATGACC 60.680 57.143 0.00 0.00 0.00 4.02
2355 3142 0.613260 TTCCCTCTTGACCATGACCG 59.387 55.000 0.00 0.00 0.00 4.79
2356 3143 1.450312 CCCTCTTGACCATGACCGC 60.450 63.158 0.00 0.00 0.00 5.68
2357 3144 1.450312 CCTCTTGACCATGACCGCC 60.450 63.158 0.00 0.00 0.00 6.13
2358 3145 1.599047 CTCTTGACCATGACCGCCT 59.401 57.895 0.00 0.00 0.00 5.52
2359 3146 0.824109 CTCTTGACCATGACCGCCTA 59.176 55.000 0.00 0.00 0.00 3.93
2360 3147 1.207089 CTCTTGACCATGACCGCCTAA 59.793 52.381 0.00 0.00 0.00 2.69
2361 3148 1.066430 TCTTGACCATGACCGCCTAAC 60.066 52.381 0.00 0.00 0.00 2.34
2362 3149 0.035820 TTGACCATGACCGCCTAACC 60.036 55.000 0.00 0.00 0.00 2.85
2363 3150 1.153229 GACCATGACCGCCTAACCC 60.153 63.158 0.00 0.00 0.00 4.11
2364 3151 2.192175 CCATGACCGCCTAACCCC 59.808 66.667 0.00 0.00 0.00 4.95
2365 3152 2.375345 CCATGACCGCCTAACCCCT 61.375 63.158 0.00 0.00 0.00 4.79
2366 3153 1.146263 CATGACCGCCTAACCCCTC 59.854 63.158 0.00 0.00 0.00 4.30
2367 3154 1.003051 ATGACCGCCTAACCCCTCT 59.997 57.895 0.00 0.00 0.00 3.69
2368 3155 0.620700 ATGACCGCCTAACCCCTCTT 60.621 55.000 0.00 0.00 0.00 2.85
2369 3156 0.838987 TGACCGCCTAACCCCTCTTT 60.839 55.000 0.00 0.00 0.00 2.52
2370 3157 0.392595 GACCGCCTAACCCCTCTTTG 60.393 60.000 0.00 0.00 0.00 2.77
2371 3158 1.749258 CCGCCTAACCCCTCTTTGC 60.749 63.158 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.599558 CGTCCCAGTGTTACGGAAGA 59.400 55.000 6.60 0.00 33.13 2.87
1 2 0.316204 ACGTCCCAGTGTTACGGAAG 59.684 55.000 16.09 8.08 40.81 3.46
2 3 0.314935 GACGTCCCAGTGTTACGGAA 59.685 55.000 16.09 0.00 40.81 4.30
4 5 1.080298 GGACGTCCCAGTGTTACGG 60.080 63.158 24.75 0.00 40.81 4.02
5 6 0.388134 CAGGACGTCCCAGTGTTACG 60.388 60.000 30.82 11.65 42.17 3.18
6 7 0.677842 ACAGGACGTCCCAGTGTTAC 59.322 55.000 30.82 2.55 32.93 2.50
7 8 0.963962 GACAGGACGTCCCAGTGTTA 59.036 55.000 30.82 0.00 38.85 2.41
8 9 0.759436 AGACAGGACGTCCCAGTGTT 60.759 55.000 30.82 16.16 46.69 3.32
9 10 0.759436 AAGACAGGACGTCCCAGTGT 60.759 55.000 30.82 26.84 46.69 3.55
10 11 0.319900 CAAGACAGGACGTCCCAGTG 60.320 60.000 30.82 23.81 46.69 3.66
11 12 0.469331 TCAAGACAGGACGTCCCAGT 60.469 55.000 30.82 27.75 46.69 4.00
12 13 0.898320 ATCAAGACAGGACGTCCCAG 59.102 55.000 30.82 24.75 46.69 4.45
13 14 0.608130 CATCAAGACAGGACGTCCCA 59.392 55.000 30.82 6.78 46.69 4.37
14 15 0.741221 GCATCAAGACAGGACGTCCC 60.741 60.000 30.82 15.91 46.69 4.46
15 16 0.037326 TGCATCAAGACAGGACGTCC 60.037 55.000 27.67 27.67 46.69 4.79
16 17 1.929836 GATGCATCAAGACAGGACGTC 59.070 52.381 21.92 7.13 45.77 4.34
17 18 1.552337 AGATGCATCAAGACAGGACGT 59.448 47.619 27.81 0.00 0.00 4.34
18 19 2.306341 AGATGCATCAAGACAGGACG 57.694 50.000 27.81 0.00 0.00 4.79
19 20 6.934056 AGATATAGATGCATCAAGACAGGAC 58.066 40.000 27.81 9.97 0.00 3.85
20 21 8.835550 ATAGATATAGATGCATCAAGACAGGA 57.164 34.615 27.81 7.69 0.00 3.86
21 22 9.964303 GTATAGATATAGATGCATCAAGACAGG 57.036 37.037 27.81 0.00 0.00 4.00
63 64 8.691797 TGTGTGGCTTTAAGAAAGAATTAGTTT 58.308 29.630 3.15 0.00 41.02 2.66
99 100 0.981183 ACGGTGCTAATCAACCTGGA 59.019 50.000 0.00 0.00 0.00 3.86
104 105 7.971455 AGTTTAATCTAACGGTGCTAATCAAC 58.029 34.615 0.00 0.00 33.26 3.18
184 185 7.636359 GTGCGTTCAGTCATTCTAAATTGATAC 59.364 37.037 0.00 0.00 0.00 2.24
258 259 2.225019 CAGGGATTAGCGTGATTGATGC 59.775 50.000 0.00 0.00 36.77 3.91
259 260 2.225019 GCAGGGATTAGCGTGATTGATG 59.775 50.000 0.00 0.00 0.00 3.07
260 261 2.158769 TGCAGGGATTAGCGTGATTGAT 60.159 45.455 0.00 0.00 0.00 2.57
261 262 1.209261 TGCAGGGATTAGCGTGATTGA 59.791 47.619 0.00 0.00 0.00 2.57
349 350 2.350895 CGGTTGGTGATGGCTCCA 59.649 61.111 0.00 0.00 35.96 3.86
508 509 1.524002 CTCCGGATGTGTGGCTCAT 59.476 57.895 3.57 0.00 0.00 2.90
523 531 1.971695 CAAGAACAACCGCCCCTCC 60.972 63.158 0.00 0.00 0.00 4.30
525 533 0.822121 GAACAAGAACAACCGCCCCT 60.822 55.000 0.00 0.00 0.00 4.79
526 534 1.104577 TGAACAAGAACAACCGCCCC 61.105 55.000 0.00 0.00 0.00 5.80
528 536 3.438781 TCATATGAACAAGAACAACCGCC 59.561 43.478 1.98 0.00 0.00 6.13
529 537 4.678509 TCATATGAACAAGAACAACCGC 57.321 40.909 1.98 0.00 0.00 5.68
530 538 5.030295 GCATCATATGAACAAGAACAACCG 58.970 41.667 9.99 0.00 0.00 4.44
531 539 5.030295 CGCATCATATGAACAAGAACAACC 58.970 41.667 9.99 0.00 0.00 3.77
532 540 5.868257 TCGCATCATATGAACAAGAACAAC 58.132 37.500 9.99 0.00 0.00 3.32
533 541 5.447683 GCTCGCATCATATGAACAAGAACAA 60.448 40.000 9.99 0.00 0.00 2.83
535 543 4.521943 GCTCGCATCATATGAACAAGAAC 58.478 43.478 9.99 0.00 0.00 3.01
538 546 2.796593 TCGCTCGCATCATATGAACAAG 59.203 45.455 9.99 6.47 0.00 3.16
568 661 2.126228 GATTGACGCACGGACCGA 60.126 61.111 23.38 0.00 0.00 4.69
601 1331 8.596293 ACATCACCCAAAAGAAACATGATAAAT 58.404 29.630 0.00 0.00 0.00 1.40
616 1347 0.539438 GCACCTGGACATCACCCAAA 60.539 55.000 0.00 0.00 32.53 3.28
812 1543 0.388649 CGAGGTTCGACCCTTGTGAG 60.389 60.000 1.82 0.00 43.74 3.51
962 1698 1.675641 GAGCGCCATGTTGAACCCT 60.676 57.895 2.29 0.00 0.00 4.34
1026 1764 2.537560 CGAAGATGGTGATGCCGGC 61.538 63.158 22.73 22.73 41.21 6.13
1093 1831 1.741706 GTAGTAGGAGTGCAGCACGTA 59.258 52.381 19.96 10.17 39.64 3.57
1200 1938 5.499004 TTATGTTTGCTCCACCTAGAACT 57.501 39.130 0.00 0.00 0.00 3.01
1249 2002 3.482786 GCTCAACATCACACGATTCAAC 58.517 45.455 0.00 0.00 0.00 3.18
1346 2099 1.309499 CGTCCTCTCCTCTGCGTCTT 61.309 60.000 0.00 0.00 0.00 3.01
1374 2127 1.194098 CTGCTCTGCGTCTTCAACTTG 59.806 52.381 0.00 0.00 0.00 3.16
1437 2190 1.099879 AAGATGCTTGGATCGCTGCC 61.100 55.000 0.00 0.00 0.00 4.85
1438 2191 0.029035 CAAGATGCTTGGATCGCTGC 59.971 55.000 0.00 0.00 0.00 5.25
1439 2192 0.029035 GCAAGATGCTTGGATCGCTG 59.971 55.000 9.01 0.99 40.96 5.18
1440 2193 1.434622 CGCAAGATGCTTGGATCGCT 61.435 55.000 9.01 0.00 42.25 4.93
1441 2194 1.010350 CGCAAGATGCTTGGATCGC 60.010 57.895 9.01 0.00 42.25 4.58
1454 2207 1.151668 CCTTCTTCCACTGTCGCAAG 58.848 55.000 0.00 0.00 0.00 4.01
1455 2208 0.468226 ACCTTCTTCCACTGTCGCAA 59.532 50.000 0.00 0.00 0.00 4.85
1456 2209 0.249868 CACCTTCTTCCACTGTCGCA 60.250 55.000 0.00 0.00 0.00 5.10
1457 2210 0.951040 CCACCTTCTTCCACTGTCGC 60.951 60.000 0.00 0.00 0.00 5.19
1458 2211 0.320771 CCCACCTTCTTCCACTGTCG 60.321 60.000 0.00 0.00 0.00 4.35
1459 2212 1.056660 TCCCACCTTCTTCCACTGTC 58.943 55.000 0.00 0.00 0.00 3.51
1460 2213 1.143073 GTTCCCACCTTCTTCCACTGT 59.857 52.381 0.00 0.00 0.00 3.55
1461 2214 1.545651 GGTTCCCACCTTCTTCCACTG 60.546 57.143 0.00 0.00 40.44 3.66
1462 2215 0.771755 GGTTCCCACCTTCTTCCACT 59.228 55.000 0.00 0.00 40.44 4.00
1463 2216 0.476771 TGGTTCCCACCTTCTTCCAC 59.523 55.000 0.00 0.00 44.61 4.02
1464 2217 2.953188 TGGTTCCCACCTTCTTCCA 58.047 52.632 0.00 0.00 44.61 3.53
1635 2417 6.906659 ACAGCTTCAATTTCAGTTACAGATG 58.093 36.000 0.00 0.00 0.00 2.90
1684 2466 4.991056 ACTAATCAATCCATTGTCGATCCG 59.009 41.667 0.00 0.00 38.84 4.18
1830 2614 0.892358 AGCTGCAACACATGACTGGG 60.892 55.000 0.00 0.00 0.00 4.45
1878 2662 7.551617 GTGTTTATACTTGCCTAGTAACATGGT 59.448 37.037 0.00 0.00 42.45 3.55
2103 2890 0.314935 GTCGGTCTTGGGACGTTACA 59.685 55.000 0.00 0.00 42.97 2.41
2104 2891 3.113046 GTCGGTCTTGGGACGTTAC 57.887 57.895 0.00 0.00 42.97 2.50
2109 2896 2.126031 GAGCGTCGGTCTTGGGAC 60.126 66.667 16.89 0.00 41.43 4.46
2110 2897 3.379445 GGAGCGTCGGTCTTGGGA 61.379 66.667 22.48 0.00 0.00 4.37
2111 2898 2.725203 TTTGGAGCGTCGGTCTTGGG 62.725 60.000 22.48 0.00 0.00 4.12
2112 2899 1.301401 TTTGGAGCGTCGGTCTTGG 60.301 57.895 22.48 0.00 0.00 3.61
2113 2900 1.860078 GTTTGGAGCGTCGGTCTTG 59.140 57.895 22.48 0.00 0.00 3.02
2114 2901 1.663702 CGTTTGGAGCGTCGGTCTT 60.664 57.895 22.48 0.00 0.00 3.01
2115 2902 2.049433 CGTTTGGAGCGTCGGTCT 60.049 61.111 22.48 0.00 0.00 3.85
2116 2903 3.774702 GCGTTTGGAGCGTCGGTC 61.775 66.667 15.95 15.95 0.00 4.79
2119 2906 3.011760 GAAGGCGTTTGGAGCGTCG 62.012 63.158 0.00 0.00 39.14 5.12
2120 2907 2.677979 GGAAGGCGTTTGGAGCGTC 61.678 63.158 0.00 0.00 35.00 5.19
2121 2908 2.668550 GGAAGGCGTTTGGAGCGT 60.669 61.111 0.00 0.00 35.00 5.07
2122 2909 0.742990 TATGGAAGGCGTTTGGAGCG 60.743 55.000 0.00 0.00 35.00 5.03
2123 2910 1.680338 ATATGGAAGGCGTTTGGAGC 58.320 50.000 0.00 0.00 0.00 4.70
2124 2911 5.334105 CGAAATATATGGAAGGCGTTTGGAG 60.334 44.000 0.00 0.00 0.00 3.86
2125 2912 4.513692 CGAAATATATGGAAGGCGTTTGGA 59.486 41.667 0.00 0.00 0.00 3.53
2126 2913 4.274950 ACGAAATATATGGAAGGCGTTTGG 59.725 41.667 0.00 0.00 0.00 3.28
2127 2914 5.204833 CACGAAATATATGGAAGGCGTTTG 58.795 41.667 0.00 0.00 0.00 2.93
2128 2915 4.879545 ACACGAAATATATGGAAGGCGTTT 59.120 37.500 0.00 0.00 0.00 3.60
2129 2916 4.448210 ACACGAAATATATGGAAGGCGTT 58.552 39.130 0.00 0.00 0.00 4.84
2130 2917 4.067972 ACACGAAATATATGGAAGGCGT 57.932 40.909 0.00 0.00 0.00 5.68
2131 2918 4.376008 CGAACACGAAATATATGGAAGGCG 60.376 45.833 0.00 0.00 0.00 5.52
2132 2919 4.084013 CCGAACACGAAATATATGGAAGGC 60.084 45.833 0.00 0.00 0.00 4.35
2133 2920 4.084013 GCCGAACACGAAATATATGGAAGG 60.084 45.833 0.00 0.00 0.00 3.46
2134 2921 4.509970 TGCCGAACACGAAATATATGGAAG 59.490 41.667 0.00 0.00 0.00 3.46
2135 2922 4.443621 TGCCGAACACGAAATATATGGAA 58.556 39.130 0.00 0.00 0.00 3.53
2136 2923 4.061357 TGCCGAACACGAAATATATGGA 57.939 40.909 0.00 0.00 0.00 3.41
2137 2924 4.272504 ACTTGCCGAACACGAAATATATGG 59.727 41.667 0.00 0.00 0.00 2.74
2138 2925 5.197549 CACTTGCCGAACACGAAATATATG 58.802 41.667 0.00 0.00 0.00 1.78
2139 2926 4.873827 ACACTTGCCGAACACGAAATATAT 59.126 37.500 0.00 0.00 0.00 0.86
2140 2927 4.247258 ACACTTGCCGAACACGAAATATA 58.753 39.130 0.00 0.00 0.00 0.86
2141 2928 3.071479 ACACTTGCCGAACACGAAATAT 58.929 40.909 0.00 0.00 0.00 1.28
2142 2929 2.485903 ACACTTGCCGAACACGAAATA 58.514 42.857 0.00 0.00 0.00 1.40
2143 2930 1.305201 ACACTTGCCGAACACGAAAT 58.695 45.000 0.00 0.00 0.00 2.17
2144 2931 1.088306 AACACTTGCCGAACACGAAA 58.912 45.000 0.00 0.00 0.00 3.46
2145 2932 1.088306 AAACACTTGCCGAACACGAA 58.912 45.000 0.00 0.00 0.00 3.85
2146 2933 1.088306 AAAACACTTGCCGAACACGA 58.912 45.000 0.00 0.00 0.00 4.35
2147 2934 2.741122 TAAAACACTTGCCGAACACG 57.259 45.000 0.00 0.00 0.00 4.49
2148 2935 4.801516 ACAAATAAAACACTTGCCGAACAC 59.198 37.500 0.00 0.00 0.00 3.32
2149 2936 4.800993 CACAAATAAAACACTTGCCGAACA 59.199 37.500 0.00 0.00 0.00 3.18
2150 2937 4.801516 ACACAAATAAAACACTTGCCGAAC 59.198 37.500 0.00 0.00 0.00 3.95
2151 2938 4.800993 CACACAAATAAAACACTTGCCGAA 59.199 37.500 0.00 0.00 0.00 4.30
2152 2939 4.142359 ACACACAAATAAAACACTTGCCGA 60.142 37.500 0.00 0.00 0.00 5.54
2153 2940 4.109050 ACACACAAATAAAACACTTGCCG 58.891 39.130 0.00 0.00 0.00 5.69
2154 2941 5.726413 GCAACACACAAATAAAACACTTGCC 60.726 40.000 0.00 0.00 0.00 4.52
2155 2942 5.163913 TGCAACACACAAATAAAACACTTGC 60.164 36.000 0.00 0.00 0.00 4.01
2156 2943 6.400579 TGCAACACACAAATAAAACACTTG 57.599 33.333 0.00 0.00 0.00 3.16
2157 2944 7.332926 TGAATGCAACACACAAATAAAACACTT 59.667 29.630 0.00 0.00 0.00 3.16
2158 2945 6.815641 TGAATGCAACACACAAATAAAACACT 59.184 30.769 0.00 0.00 0.00 3.55
2159 2946 6.998338 TGAATGCAACACACAAATAAAACAC 58.002 32.000 0.00 0.00 0.00 3.32
2160 2947 7.493645 TGATGAATGCAACACACAAATAAAACA 59.506 29.630 0.00 0.00 0.00 2.83
2161 2948 7.849496 TGATGAATGCAACACACAAATAAAAC 58.151 30.769 0.00 0.00 0.00 2.43
2162 2949 8.604640 ATGATGAATGCAACACACAAATAAAA 57.395 26.923 0.00 0.00 29.08 1.52
2163 2950 7.062022 CGATGATGAATGCAACACACAAATAAA 59.938 33.333 0.00 0.00 29.08 1.40
2164 2951 6.527372 CGATGATGAATGCAACACACAAATAA 59.473 34.615 0.00 0.00 29.08 1.40
2165 2952 6.028987 CGATGATGAATGCAACACACAAATA 58.971 36.000 0.00 0.00 29.08 1.40
2166 2953 4.860352 CGATGATGAATGCAACACACAAAT 59.140 37.500 0.00 0.00 29.08 2.32
2167 2954 4.228317 CGATGATGAATGCAACACACAAA 58.772 39.130 0.00 0.00 29.08 2.83
2168 2955 3.824151 CGATGATGAATGCAACACACAA 58.176 40.909 0.00 0.00 29.08 3.33
2169 2956 2.414426 GCGATGATGAATGCAACACACA 60.414 45.455 0.00 0.00 29.08 3.72
2170 2957 2.179589 GCGATGATGAATGCAACACAC 58.820 47.619 0.00 0.00 29.08 3.82
2171 2958 1.811359 TGCGATGATGAATGCAACACA 59.189 42.857 0.00 0.00 33.80 3.72
2172 2959 2.547913 TGCGATGATGAATGCAACAC 57.452 45.000 0.00 0.00 33.80 3.32
2173 2960 3.786516 AATGCGATGATGAATGCAACA 57.213 38.095 0.00 0.00 41.22 3.33
2174 2961 6.577800 CAAATAATGCGATGATGAATGCAAC 58.422 36.000 0.00 0.00 41.22 4.17
2175 2962 5.176039 GCAAATAATGCGATGATGAATGCAA 59.824 36.000 0.00 0.00 46.87 4.08
2176 2963 4.682401 GCAAATAATGCGATGATGAATGCA 59.318 37.500 0.00 0.00 46.87 3.96
2177 2964 5.186404 GCAAATAATGCGATGATGAATGC 57.814 39.130 0.00 0.00 46.87 3.56
2190 2977 5.045215 AGTGCCGATTCAATGCAAATAATG 58.955 37.500 0.00 0.00 36.65 1.90
2191 2978 5.266733 AGTGCCGATTCAATGCAAATAAT 57.733 34.783 0.00 0.00 36.65 1.28
2192 2979 4.717233 AGTGCCGATTCAATGCAAATAA 57.283 36.364 0.00 0.00 36.65 1.40
2193 2980 4.671377 GAAGTGCCGATTCAATGCAAATA 58.329 39.130 0.00 0.00 36.65 1.40
2194 2981 3.514645 GAAGTGCCGATTCAATGCAAAT 58.485 40.909 0.00 0.00 36.65 2.32
2195 2982 2.668001 CGAAGTGCCGATTCAATGCAAA 60.668 45.455 0.00 0.00 36.65 3.68
2196 2983 1.135717 CGAAGTGCCGATTCAATGCAA 60.136 47.619 0.00 0.00 36.65 4.08
2197 2984 0.447406 CGAAGTGCCGATTCAATGCA 59.553 50.000 0.00 0.00 0.00 3.96
2198 2985 0.447801 ACGAAGTGCCGATTCAATGC 59.552 50.000 0.00 0.00 42.51 3.56
2199 2986 2.508867 CAACGAAGTGCCGATTCAATG 58.491 47.619 0.00 0.00 45.00 2.82
2200 2987 1.135689 GCAACGAAGTGCCGATTCAAT 60.136 47.619 0.00 0.00 45.00 2.57
2201 2988 0.237235 GCAACGAAGTGCCGATTCAA 59.763 50.000 0.00 0.00 45.00 2.69
2202 2989 1.573829 GGCAACGAAGTGCCGATTCA 61.574 55.000 12.44 0.00 45.00 2.57
2203 2990 1.134694 GGCAACGAAGTGCCGATTC 59.865 57.895 12.44 0.00 45.00 2.52
2204 2991 3.263941 GGCAACGAAGTGCCGATT 58.736 55.556 12.44 0.00 45.00 3.34
2216 3003 5.723237 CAAGTTTTAAAACATGACGGCAAC 58.277 37.500 28.03 2.45 39.28 4.17
2217 3004 4.268884 GCAAGTTTTAAAACATGACGGCAA 59.731 37.500 30.41 0.00 39.28 4.52
2218 3005 3.799420 GCAAGTTTTAAAACATGACGGCA 59.201 39.130 30.41 0.00 39.28 5.69
2219 3006 3.799420 TGCAAGTTTTAAAACATGACGGC 59.201 39.130 30.41 22.19 39.28 5.68
2220 3007 6.523676 AATGCAAGTTTTAAAACATGACGG 57.476 33.333 30.41 15.67 39.28 4.79
2221 3008 6.281056 CGAATGCAAGTTTTAAAACATGACG 58.719 36.000 30.41 24.04 39.28 4.35
2222 3009 6.064525 GCGAATGCAAGTTTTAAAACATGAC 58.935 36.000 30.41 22.90 39.28 3.06
2223 3010 5.982516 AGCGAATGCAAGTTTTAAAACATGA 59.017 32.000 30.41 19.32 46.23 3.07
2224 3011 6.214205 AGCGAATGCAAGTTTTAAAACATG 57.786 33.333 28.03 26.36 46.23 3.21
2225 3012 5.116983 CGAGCGAATGCAAGTTTTAAAACAT 59.883 36.000 28.03 16.94 46.23 2.71
2226 3013 4.439449 CGAGCGAATGCAAGTTTTAAAACA 59.561 37.500 28.03 11.71 46.23 2.83
2227 3014 4.439776 ACGAGCGAATGCAAGTTTTAAAAC 59.560 37.500 21.06 21.06 46.23 2.43
2228 3015 4.602995 ACGAGCGAATGCAAGTTTTAAAA 58.397 34.783 0.00 0.00 46.23 1.52
2229 3016 4.215965 GACGAGCGAATGCAAGTTTTAAA 58.784 39.130 0.00 0.00 46.23 1.52
2230 3017 3.663233 CGACGAGCGAATGCAAGTTTTAA 60.663 43.478 0.00 0.00 46.23 1.52
2231 3018 2.159894 CGACGAGCGAATGCAAGTTTTA 60.160 45.455 0.00 0.00 46.23 1.52
2232 3019 1.398451 CGACGAGCGAATGCAAGTTTT 60.398 47.619 0.00 0.00 46.23 2.43
2233 3020 0.163788 CGACGAGCGAATGCAAGTTT 59.836 50.000 0.00 0.00 46.23 2.66
2234 3021 0.944311 ACGACGAGCGAATGCAAGTT 60.944 50.000 0.00 0.00 46.23 2.66
2235 3022 0.944311 AACGACGAGCGAATGCAAGT 60.944 50.000 0.00 0.00 46.23 3.16
2236 3023 0.517132 CAACGACGAGCGAATGCAAG 60.517 55.000 0.00 0.00 46.23 4.01
2237 3024 0.941936 TCAACGACGAGCGAATGCAA 60.942 50.000 0.00 0.00 46.23 4.08
2238 3025 0.735978 ATCAACGACGAGCGAATGCA 60.736 50.000 0.00 0.00 46.23 3.96
2239 3026 0.314578 CATCAACGACGAGCGAATGC 60.315 55.000 0.00 0.00 44.57 3.56
2240 3027 0.992072 ACATCAACGACGAGCGAATG 59.008 50.000 0.00 10.71 44.57 2.67
2241 3028 1.710013 AACATCAACGACGAGCGAAT 58.290 45.000 0.00 0.00 44.57 3.34
2242 3029 1.454276 GAAACATCAACGACGAGCGAA 59.546 47.619 0.00 0.00 44.57 4.70
2243 3030 1.057636 GAAACATCAACGACGAGCGA 58.942 50.000 0.00 0.00 44.57 4.93
2245 3032 1.390463 GGAGAAACATCAACGACGAGC 59.610 52.381 0.00 0.00 0.00 5.03
2246 3033 1.993370 GGGAGAAACATCAACGACGAG 59.007 52.381 0.00 0.00 0.00 4.18
2247 3034 1.616865 AGGGAGAAACATCAACGACGA 59.383 47.619 0.00 0.00 0.00 4.20
2248 3035 2.080286 AGGGAGAAACATCAACGACG 57.920 50.000 0.00 0.00 0.00 5.12
2249 3036 3.609409 GCAAAGGGAGAAACATCAACGAC 60.609 47.826 0.00 0.00 0.00 4.34
2250 3037 2.552315 GCAAAGGGAGAAACATCAACGA 59.448 45.455 0.00 0.00 0.00 3.85
2251 3038 2.351738 GGCAAAGGGAGAAACATCAACG 60.352 50.000 0.00 0.00 0.00 4.10
2252 3039 2.893489 AGGCAAAGGGAGAAACATCAAC 59.107 45.455 0.00 0.00 0.00 3.18
2253 3040 3.243359 AGGCAAAGGGAGAAACATCAA 57.757 42.857 0.00 0.00 0.00 2.57
2254 3041 2.978156 AGGCAAAGGGAGAAACATCA 57.022 45.000 0.00 0.00 0.00 3.07
2255 3042 3.157087 TGAAGGCAAAGGGAGAAACATC 58.843 45.455 0.00 0.00 0.00 3.06
2256 3043 3.243359 TGAAGGCAAAGGGAGAAACAT 57.757 42.857 0.00 0.00 0.00 2.71
2257 3044 2.746279 TGAAGGCAAAGGGAGAAACA 57.254 45.000 0.00 0.00 0.00 2.83
2258 3045 3.057245 GTGATGAAGGCAAAGGGAGAAAC 60.057 47.826 0.00 0.00 0.00 2.78
2259 3046 3.157087 GTGATGAAGGCAAAGGGAGAAA 58.843 45.455 0.00 0.00 0.00 2.52
2260 3047 2.555227 GGTGATGAAGGCAAAGGGAGAA 60.555 50.000 0.00 0.00 0.00 2.87
2261 3048 1.004745 GGTGATGAAGGCAAAGGGAGA 59.995 52.381 0.00 0.00 0.00 3.71
2262 3049 1.005215 AGGTGATGAAGGCAAAGGGAG 59.995 52.381 0.00 0.00 0.00 4.30
2263 3050 1.075601 AGGTGATGAAGGCAAAGGGA 58.924 50.000 0.00 0.00 0.00 4.20
2264 3051 1.821136 GAAGGTGATGAAGGCAAAGGG 59.179 52.381 0.00 0.00 0.00 3.95
2265 3052 1.821136 GGAAGGTGATGAAGGCAAAGG 59.179 52.381 0.00 0.00 0.00 3.11
2266 3053 1.821136 GGGAAGGTGATGAAGGCAAAG 59.179 52.381 0.00 0.00 0.00 2.77
2267 3054 1.428912 AGGGAAGGTGATGAAGGCAAA 59.571 47.619 0.00 0.00 0.00 3.68
2268 3055 1.075601 AGGGAAGGTGATGAAGGCAA 58.924 50.000 0.00 0.00 0.00 4.52
2269 3056 1.075601 AAGGGAAGGTGATGAAGGCA 58.924 50.000 0.00 0.00 0.00 4.75
2270 3057 1.467920 CAAGGGAAGGTGATGAAGGC 58.532 55.000 0.00 0.00 0.00 4.35
2271 3058 1.635487 TCCAAGGGAAGGTGATGAAGG 59.365 52.381 0.00 0.00 0.00 3.46
2272 3059 3.549794 GATCCAAGGGAAGGTGATGAAG 58.450 50.000 0.00 0.00 34.34 3.02
2273 3060 2.092968 CGATCCAAGGGAAGGTGATGAA 60.093 50.000 0.00 0.00 34.34 2.57
2274 3061 1.486310 CGATCCAAGGGAAGGTGATGA 59.514 52.381 0.00 0.00 34.34 2.92
2275 3062 1.959042 CGATCCAAGGGAAGGTGATG 58.041 55.000 0.00 0.00 34.34 3.07
2276 3063 0.181350 GCGATCCAAGGGAAGGTGAT 59.819 55.000 0.00 0.00 34.34 3.06
2277 3064 1.602237 GCGATCCAAGGGAAGGTGA 59.398 57.895 0.00 0.00 34.34 4.02
2278 3065 1.452108 GGCGATCCAAGGGAAGGTG 60.452 63.158 0.00 0.00 34.34 4.00
2279 3066 1.208165 AAGGCGATCCAAGGGAAGGT 61.208 55.000 0.00 0.00 34.34 3.50
2280 3067 0.749454 CAAGGCGATCCAAGGGAAGG 60.749 60.000 0.00 0.00 34.34 3.46
2281 3068 1.379642 GCAAGGCGATCCAAGGGAAG 61.380 60.000 0.00 0.00 34.34 3.46
2282 3069 1.378514 GCAAGGCGATCCAAGGGAA 60.379 57.895 0.00 0.00 34.34 3.97
2283 3070 2.272146 GCAAGGCGATCCAAGGGA 59.728 61.111 0.00 0.00 35.55 4.20
2284 3071 2.830370 GGCAAGGCGATCCAAGGG 60.830 66.667 0.00 0.00 33.74 3.95
2285 3072 2.117156 CAGGCAAGGCGATCCAAGG 61.117 63.158 0.00 0.00 33.74 3.61
2286 3073 2.768492 GCAGGCAAGGCGATCCAAG 61.768 63.158 0.00 0.00 33.74 3.61
2287 3074 2.751436 GCAGGCAAGGCGATCCAA 60.751 61.111 0.00 0.00 33.74 3.53
2294 3081 4.043200 GGTCAACGCAGGCAAGGC 62.043 66.667 0.00 0.00 0.00 4.35
2295 3082 3.726517 CGGTCAACGCAGGCAAGG 61.727 66.667 0.00 0.00 34.82 3.61
2305 3092 1.804748 GATTGGTCTGGAACGGTCAAC 59.195 52.381 1.31 0.00 33.75 3.18
2306 3093 1.606994 CGATTGGTCTGGAACGGTCAA 60.607 52.381 1.31 0.00 34.83 3.18
2307 3094 0.037697 CGATTGGTCTGGAACGGTCA 60.038 55.000 1.31 0.00 35.30 4.02
2308 3095 0.739813 CCGATTGGTCTGGAACGGTC 60.740 60.000 0.00 0.00 36.38 4.79
2309 3096 1.295423 CCGATTGGTCTGGAACGGT 59.705 57.895 0.00 0.00 36.38 4.83
2310 3097 1.449601 CCCGATTGGTCTGGAACGG 60.450 63.158 0.00 0.00 40.03 4.44
2311 3098 4.201951 CCCGATTGGTCTGGAACG 57.798 61.111 0.00 0.00 30.85 3.95
2320 3107 0.170339 GGAAGCGAAAACCCGATTGG 59.830 55.000 0.00 0.00 38.34 3.16
2321 3108 0.170339 GGGAAGCGAAAACCCGATTG 59.830 55.000 0.00 0.00 38.34 2.67
2322 3109 2.563297 GGGAAGCGAAAACCCGATT 58.437 52.632 0.00 0.00 41.08 3.34
2323 3110 4.313819 GGGAAGCGAAAACCCGAT 57.686 55.556 0.00 0.00 34.03 4.18
2326 3113 0.881796 CAAGAGGGAAGCGAAAACCC 59.118 55.000 0.00 0.00 43.55 4.11
2327 3114 1.535896 GTCAAGAGGGAAGCGAAAACC 59.464 52.381 0.00 0.00 0.00 3.27
2328 3115 1.535896 GGTCAAGAGGGAAGCGAAAAC 59.464 52.381 0.00 0.00 0.00 2.43
2329 3116 1.142060 TGGTCAAGAGGGAAGCGAAAA 59.858 47.619 0.00 0.00 0.00 2.29
2330 3117 0.762418 TGGTCAAGAGGGAAGCGAAA 59.238 50.000 0.00 0.00 0.00 3.46
2331 3118 0.984230 ATGGTCAAGAGGGAAGCGAA 59.016 50.000 0.00 0.00 0.00 4.70
2332 3119 0.250234 CATGGTCAAGAGGGAAGCGA 59.750 55.000 0.00 0.00 0.00 4.93
2333 3120 0.250234 TCATGGTCAAGAGGGAAGCG 59.750 55.000 0.00 0.00 0.00 4.68
2334 3121 1.680249 GGTCATGGTCAAGAGGGAAGC 60.680 57.143 0.00 0.00 0.00 3.86
2335 3122 1.406069 CGGTCATGGTCAAGAGGGAAG 60.406 57.143 0.00 0.00 0.00 3.46
2336 3123 0.613260 CGGTCATGGTCAAGAGGGAA 59.387 55.000 0.00 0.00 0.00 3.97
2337 3124 1.899437 GCGGTCATGGTCAAGAGGGA 61.899 60.000 0.00 0.00 0.00 4.20
2338 3125 1.450312 GCGGTCATGGTCAAGAGGG 60.450 63.158 0.00 0.00 0.00 4.30
2339 3126 1.450312 GGCGGTCATGGTCAAGAGG 60.450 63.158 0.00 0.00 0.00 3.69
2340 3127 0.824109 TAGGCGGTCATGGTCAAGAG 59.176 55.000 0.00 0.00 0.00 2.85
2341 3128 1.066430 GTTAGGCGGTCATGGTCAAGA 60.066 52.381 0.00 0.00 0.00 3.02
2342 3129 1.369625 GTTAGGCGGTCATGGTCAAG 58.630 55.000 0.00 0.00 0.00 3.02
2343 3130 0.035820 GGTTAGGCGGTCATGGTCAA 60.036 55.000 0.00 0.00 0.00 3.18
2344 3131 1.600107 GGTTAGGCGGTCATGGTCA 59.400 57.895 0.00 0.00 0.00 4.02
2345 3132 1.153229 GGGTTAGGCGGTCATGGTC 60.153 63.158 0.00 0.00 0.00 4.02
2346 3133 2.676265 GGGGTTAGGCGGTCATGGT 61.676 63.158 0.00 0.00 0.00 3.55
2347 3134 2.192175 GGGGTTAGGCGGTCATGG 59.808 66.667 0.00 0.00 0.00 3.66
2348 3135 1.146263 GAGGGGTTAGGCGGTCATG 59.854 63.158 0.00 0.00 0.00 3.07
2349 3136 0.620700 AAGAGGGGTTAGGCGGTCAT 60.621 55.000 0.00 0.00 0.00 3.06
2350 3137 0.838987 AAAGAGGGGTTAGGCGGTCA 60.839 55.000 0.00 0.00 0.00 4.02
2351 3138 0.392595 CAAAGAGGGGTTAGGCGGTC 60.393 60.000 0.00 0.00 0.00 4.79
2352 3139 1.683441 CAAAGAGGGGTTAGGCGGT 59.317 57.895 0.00 0.00 0.00 5.68
2353 3140 1.749258 GCAAAGAGGGGTTAGGCGG 60.749 63.158 0.00 0.00 0.00 6.13
2354 3141 3.905249 GCAAAGAGGGGTTAGGCG 58.095 61.111 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.