Multiple sequence alignment - TraesCS3D01G403200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G403200 chr3D 100.000 7123 0 0 1 7123 517284959 517277837 0.000000e+00 13154.0
1 TraesCS3D01G403200 chr3D 88.406 1173 107 18 2320 3469 507479583 507480749 0.000000e+00 1386.0
2 TraesCS3D01G403200 chr3D 98.519 135 2 0 6252 6386 517278576 517278442 9.230000e-59 239.0
3 TraesCS3D01G403200 chr3D 98.519 135 2 0 6384 6518 517278708 517278574 9.230000e-59 239.0
4 TraesCS3D01G403200 chr3B 96.204 2081 70 5 4308 6386 681102854 681100781 0.000000e+00 3397.0
5 TraesCS3D01G403200 chr3B 90.420 1597 102 21 122 1683 681106016 681104436 0.000000e+00 2054.0
6 TraesCS3D01G403200 chr3B 92.639 883 18 11 3470 4322 681103738 681102873 0.000000e+00 1227.0
7 TraesCS3D01G403200 chr3B 90.498 642 50 8 1485 2117 681104541 681103902 0.000000e+00 837.0
8 TraesCS3D01G403200 chr3B 94.378 249 11 2 6391 6636 681100910 681100662 5.210000e-101 379.0
9 TraesCS3D01G403200 chr3B 95.181 166 6 2 6657 6822 575615093 575614930 1.970000e-65 261.0
10 TraesCS3D01G403200 chr3B 92.529 174 8 4 2147 2319 681103903 681103734 1.980000e-60 244.0
11 TraesCS3D01G403200 chr3A 96.030 1713 58 4 4679 6386 653245988 653244281 0.000000e+00 2778.0
12 TraesCS3D01G403200 chr3A 93.277 1175 32 11 3470 4630 653247128 653245987 0.000000e+00 1688.0
13 TraesCS3D01G403200 chr3A 90.253 1026 59 14 668 1679 653248958 653247960 0.000000e+00 1303.0
14 TraesCS3D01G403200 chr3A 91.263 847 54 10 1489 2319 653247966 653247124 0.000000e+00 1136.0
15 TraesCS3D01G403200 chr3A 90.647 556 36 9 122 672 653249557 653249013 0.000000e+00 725.0
16 TraesCS3D01G403200 chr3A 93.651 252 12 3 6388 6636 653244413 653244163 2.430000e-99 374.0
17 TraesCS3D01G403200 chr3A 95.181 166 7 1 6657 6822 21233238 21233402 1.970000e-65 261.0
18 TraesCS3D01G403200 chr3A 90.710 183 17 0 1497 1679 653248050 653247868 1.980000e-60 244.0
19 TraesCS3D01G403200 chr3A 97.297 74 2 0 1514 1587 653247842 653247769 7.500000e-25 126.0
20 TraesCS3D01G403200 chr1D 88.210 1162 115 20 2320 3469 340224908 340223757 0.000000e+00 1367.0
21 TraesCS3D01G403200 chr1D 88.385 1102 111 13 2377 3467 277289648 277288553 0.000000e+00 1310.0
22 TraesCS3D01G403200 chr1D 85.763 1166 136 26 2320 3469 378075811 378076962 0.000000e+00 1206.0
23 TraesCS3D01G403200 chr5D 86.713 1159 135 17 2322 3469 271935257 271936407 0.000000e+00 1269.0
24 TraesCS3D01G403200 chr5D 86.047 1161 136 22 2320 3469 271955433 271956578 0.000000e+00 1223.0
25 TraesCS3D01G403200 chr5D 90.909 198 17 1 3273 3469 270913868 270914065 1.520000e-66 265.0
26 TraesCS3D01G403200 chr5D 81.761 159 24 3 381 538 256439057 256438903 2.090000e-25 128.0
27 TraesCS3D01G403200 chr7D 89.360 1015 92 12 2319 3326 84391765 84390760 0.000000e+00 1262.0
28 TraesCS3D01G403200 chr7D 98.722 313 4 0 6811 7123 632398454 632398766 2.240000e-154 556.0
29 TraesCS3D01G403200 chr7D 98.083 313 6 0 6811 7123 210079435 210079747 4.860000e-151 545.0
30 TraesCS3D01G403200 chr7D 95.208 313 15 0 6811 7123 623454051 623454363 4.960000e-136 496.0
31 TraesCS3D01G403200 chr7D 94.534 311 17 0 6813 7123 39556202 39556512 1.390000e-131 481.0
32 TraesCS3D01G403200 chr7D 98.795 166 2 0 6657 6822 632398350 632398515 5.400000e-76 296.0
33 TraesCS3D01G403200 chr7D 83.688 282 38 8 3193 3469 185876846 185877124 7.090000e-65 259.0
34 TraesCS3D01G403200 chr7D 79.649 285 42 11 332 602 462140246 462140528 2.620000e-44 191.0
35 TraesCS3D01G403200 chr7D 77.982 218 33 6 332 538 417772402 417772615 9.700000e-24 122.0
36 TraesCS3D01G403200 chr4D 85.850 1159 149 13 2320 3470 55607660 55606509 0.000000e+00 1218.0
37 TraesCS3D01G403200 chr4D 85.420 1166 139 26 2317 3469 10177158 10176011 0.000000e+00 1182.0
38 TraesCS3D01G403200 chr4D 98.083 313 6 0 6811 7123 29190214 29189902 4.860000e-151 545.0
39 TraesCS3D01G403200 chr4D 98.795 166 2 0 6657 6822 29190318 29190153 5.400000e-76 296.0
40 TraesCS3D01G403200 chr2D 97.452 314 6 2 6811 7123 368797148 368796836 1.050000e-147 534.0
41 TraesCS3D01G403200 chr2D 95.847 313 13 0 6811 7123 162251962 162252274 2.290000e-139 507.0
42 TraesCS3D01G403200 chr2D 98.795 166 2 0 6657 6822 368797252 368797087 5.400000e-76 296.0
43 TraesCS3D01G403200 chr2D 95.783 166 6 1 6657 6822 162251859 162252023 4.240000e-67 267.0
44 TraesCS3D01G403200 chr2D 96.226 159 6 0 6664 6822 98664381 98664539 1.970000e-65 261.0
45 TraesCS3D01G403200 chr1A 96.049 329 10 2 6796 7123 1311903 1312229 3.780000e-147 532.0
46 TraesCS3D01G403200 chr6D 96.486 313 9 2 6811 7123 13210608 13210298 3.810000e-142 516.0
47 TraesCS3D01G403200 chr2A 96.988 166 4 1 6657 6822 33540148 33539984 1.960000e-70 278.0
48 TraesCS3D01G403200 chr2A 78.439 269 38 12 332 583 612840832 612840567 2.660000e-34 158.0
49 TraesCS3D01G403200 chr4A 96.894 161 4 1 6662 6822 165043311 165043470 1.180000e-67 268.0
50 TraesCS3D01G403200 chr2B 81.362 279 45 6 332 606 403114958 403114683 3.340000e-53 220.0
51 TraesCS3D01G403200 chr7B 77.232 224 34 7 332 541 433508174 433508394 1.620000e-21 115.0
52 TraesCS3D01G403200 chr4B 76.744 215 40 7 354 565 640989748 640989955 2.100000e-20 111.0
53 TraesCS3D01G403200 chr1B 76.289 194 43 3 332 523 298253086 298253278 4.550000e-17 100.0
54 TraesCS3D01G403200 chr6A 100.000 28 0 0 440 467 611716645 611716618 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G403200 chr3D 517277837 517284959 7122 True 13154.000000 13154 100.000 1 7123 1 chr3D.!!$R1 7122
1 TraesCS3D01G403200 chr3D 507479583 507480749 1166 False 1386.000000 1386 88.406 2320 3469 1 chr3D.!!$F1 1149
2 TraesCS3D01G403200 chr3B 681100662 681106016 5354 True 1356.333333 3397 92.778 122 6636 6 chr3B.!!$R2 6514
3 TraesCS3D01G403200 chr3A 653244163 653249557 5394 True 1046.750000 2778 92.891 122 6636 8 chr3A.!!$R1 6514
4 TraesCS3D01G403200 chr1D 340223757 340224908 1151 True 1367.000000 1367 88.210 2320 3469 1 chr1D.!!$R2 1149
5 TraesCS3D01G403200 chr1D 277288553 277289648 1095 True 1310.000000 1310 88.385 2377 3467 1 chr1D.!!$R1 1090
6 TraesCS3D01G403200 chr1D 378075811 378076962 1151 False 1206.000000 1206 85.763 2320 3469 1 chr1D.!!$F1 1149
7 TraesCS3D01G403200 chr5D 271935257 271936407 1150 False 1269.000000 1269 86.713 2322 3469 1 chr5D.!!$F2 1147
8 TraesCS3D01G403200 chr5D 271955433 271956578 1145 False 1223.000000 1223 86.047 2320 3469 1 chr5D.!!$F3 1149
9 TraesCS3D01G403200 chr7D 84390760 84391765 1005 True 1262.000000 1262 89.360 2319 3326 1 chr7D.!!$R1 1007
10 TraesCS3D01G403200 chr4D 55606509 55607660 1151 True 1218.000000 1218 85.850 2320 3470 1 chr4D.!!$R2 1150
11 TraesCS3D01G403200 chr4D 10176011 10177158 1147 True 1182.000000 1182 85.420 2317 3469 1 chr4D.!!$R1 1152

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
62 63 0.526739 AAAACGTTTCAGCAACCCGC 60.527 50.000 15.01 0.00 42.91 6.13 F
1398 1525 0.039618 CCAACCACTGCCCTGGTAAT 59.960 55.000 2.91 0.00 44.32 1.89 F
1995 2411 0.332632 AATAAGCTTGCCCCTCAGCA 59.667 50.000 9.86 0.00 42.17 4.41 F
3043 3484 0.107643 TTCTGGCATGTCACGGACAA 59.892 50.000 0.00 0.00 45.96 3.18 F
3053 3494 2.203877 ACGGACAAGTAGGGCCCA 60.204 61.111 27.56 7.27 0.00 5.36 F
3121 3562 2.440253 TCTGCCATGGATGATGTCATGA 59.560 45.455 18.40 0.00 42.25 3.07 F
3272 3715 2.490991 GTGCTAACTTCAAGGGAACGT 58.509 47.619 0.00 0.00 0.00 3.99 F
4467 4989 2.248248 CTAGTTGAGGTGTCCAGGACA 58.752 52.381 19.21 19.21 40.50 4.02 F
5696 6218 1.817099 GGAAGCTGGAGATGTGGCG 60.817 63.158 0.00 0.00 0.00 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1729 2136 0.833287 GATCTCCCAGTAGCTGCCAA 59.167 55.000 0.00 0.0 0.00 4.52 R
2613 3042 0.034767 TGCAAAGGGCTCAGATCCTG 60.035 55.000 0.00 0.0 45.15 3.86 R
3440 3898 0.696501 AAATGACCACGGGTAGCCTT 59.303 50.000 9.73 0.0 35.25 4.35 R
3889 4378 1.039856 GGTGTTGTGCCAAATCTGGT 58.960 50.000 0.00 0.0 45.53 4.00 R
3890 4379 1.270550 GAGGTGTTGTGCCAAATCTGG 59.729 52.381 0.00 0.0 46.65 3.86 R
4295 4784 1.383799 CCCCCAGGCAATGACAAGA 59.616 57.895 0.00 0.0 0.00 3.02 R
4630 5152 3.324846 TCATACAAGTGTTCAGCAGTCCT 59.675 43.478 0.00 0.0 0.00 3.85 R
5714 6236 0.251354 GAGCCACATCTCCAGCTTCA 59.749 55.000 0.00 0.0 35.23 3.02 R
6636 7164 0.602905 GGACATATAGGTGCCCACGC 60.603 60.000 0.00 0.0 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.450609 TAAGCTCAGTGGTTCGGAAC 57.549 50.000 12.41 12.41 37.56 3.62
33 34 2.747686 GGAACGGTGGCAAGAGGA 59.252 61.111 0.00 0.00 0.00 3.71
34 35 1.299976 GGAACGGTGGCAAGAGGAT 59.700 57.895 0.00 0.00 0.00 3.24
35 36 0.539986 GGAACGGTGGCAAGAGGATA 59.460 55.000 0.00 0.00 0.00 2.59
36 37 1.653151 GAACGGTGGCAAGAGGATAC 58.347 55.000 0.00 0.00 0.00 2.24
53 54 5.600908 GGATACTACAGCAAAACGTTTCA 57.399 39.130 15.01 0.00 0.00 2.69
54 55 5.618561 GGATACTACAGCAAAACGTTTCAG 58.381 41.667 15.01 11.24 0.00 3.02
55 56 3.334272 ACTACAGCAAAACGTTTCAGC 57.666 42.857 23.22 23.22 0.00 4.26
56 57 2.680841 ACTACAGCAAAACGTTTCAGCA 59.319 40.909 28.68 14.87 0.00 4.41
57 58 2.645730 ACAGCAAAACGTTTCAGCAA 57.354 40.000 28.68 0.00 0.00 3.91
58 59 2.258755 ACAGCAAAACGTTTCAGCAAC 58.741 42.857 28.68 11.85 0.00 4.17
59 60 1.587946 CAGCAAAACGTTTCAGCAACC 59.412 47.619 28.68 9.62 30.65 3.77
60 61 0.927537 GCAAAACGTTTCAGCAACCC 59.072 50.000 24.79 3.86 30.65 4.11
61 62 1.196200 CAAAACGTTTCAGCAACCCG 58.804 50.000 15.01 0.00 30.65 5.28
62 63 0.526739 AAAACGTTTCAGCAACCCGC 60.527 50.000 15.01 0.00 42.91 6.13
125 126 2.436646 CGCGTGAATGCCCCTCTT 60.437 61.111 0.00 0.00 0.00 2.85
126 127 2.753966 CGCGTGAATGCCCCTCTTG 61.754 63.158 0.00 0.00 0.00 3.02
127 128 1.675641 GCGTGAATGCCCCTCTTGT 60.676 57.895 0.00 0.00 0.00 3.16
128 129 1.926511 GCGTGAATGCCCCTCTTGTG 61.927 60.000 0.00 0.00 0.00 3.33
237 238 3.950232 GGGCTCATCTACACCCGA 58.050 61.111 0.00 0.00 31.32 5.14
308 312 5.825905 CGTGATGTTCATGCAAAAATTCA 57.174 34.783 0.00 0.00 0.00 2.57
365 369 2.484264 GGTGTTTGAACATTCGAGGAGG 59.516 50.000 0.00 0.00 41.59 4.30
429 435 4.229304 TCAAAAGTTTCTCAGACACCCA 57.771 40.909 0.00 0.00 0.00 4.51
434 440 5.774498 AAGTTTCTCAGACACCCAAAATC 57.226 39.130 0.00 0.00 0.00 2.17
468 474 3.657956 GAGCTCCTCGAATGTCCAG 57.342 57.895 0.87 0.00 0.00 3.86
626 635 7.596494 CATCCATACAATTACATCCATTCCAC 58.404 38.462 0.00 0.00 0.00 4.02
782 879 2.415512 GCCAGCCAACTTACGAACTTAG 59.584 50.000 0.00 0.00 0.00 2.18
805 902 3.497031 GCGGCAAGTTAGCGGGTC 61.497 66.667 0.00 0.00 35.62 4.46
898 996 2.289756 GGAAGGAGAACACTCTTCCCAC 60.290 54.545 9.49 0.00 35.06 4.61
932 1030 2.358247 CGACCCAACCAACTCCCG 60.358 66.667 0.00 0.00 0.00 5.14
1243 1369 4.969816 AGACGCGGTAGATTTTGAATTTG 58.030 39.130 12.47 0.00 0.00 2.32
1272 1398 0.460284 ATTGAGATTTCTCGCGCGGT 60.460 50.000 31.69 11.11 45.72 5.68
1273 1399 1.351430 TTGAGATTTCTCGCGCGGTG 61.351 55.000 31.69 22.51 45.72 4.94
1274 1400 3.144120 GAGATTTCTCGCGCGGTGC 62.144 63.158 31.69 13.41 41.47 5.01
1398 1525 0.039618 CCAACCACTGCCCTGGTAAT 59.960 55.000 2.91 0.00 44.32 1.89
1399 1526 1.549950 CCAACCACTGCCCTGGTAATT 60.550 52.381 2.91 0.00 44.32 1.40
1400 1527 1.545582 CAACCACTGCCCTGGTAATTG 59.454 52.381 2.91 0.00 44.32 2.32
1401 1528 0.777446 ACCACTGCCCTGGTAATTGT 59.223 50.000 0.46 0.00 43.19 2.71
1402 1529 1.146982 ACCACTGCCCTGGTAATTGTT 59.853 47.619 0.46 0.00 43.19 2.83
1403 1530 1.545582 CCACTGCCCTGGTAATTGTTG 59.454 52.381 0.00 0.00 0.00 3.33
1404 1531 2.238521 CACTGCCCTGGTAATTGTTGT 58.761 47.619 0.00 0.00 0.00 3.32
1405 1532 2.627699 CACTGCCCTGGTAATTGTTGTT 59.372 45.455 0.00 0.00 0.00 2.83
1406 1533 3.069443 CACTGCCCTGGTAATTGTTGTTT 59.931 43.478 0.00 0.00 0.00 2.83
1407 1534 3.709141 ACTGCCCTGGTAATTGTTGTTTT 59.291 39.130 0.00 0.00 0.00 2.43
1408 1535 4.896482 ACTGCCCTGGTAATTGTTGTTTTA 59.104 37.500 0.00 0.00 0.00 1.52
1415 1542 7.256154 CCCTGGTAATTGTTGTTTTATCCTTGT 60.256 37.037 0.00 0.00 0.00 3.16
1419 1546 8.769891 GGTAATTGTTGTTTTATCCTTGTTTGG 58.230 33.333 0.00 0.00 0.00 3.28
1426 1553 5.009610 TGTTTTATCCTTGTTTGGTCTGCTC 59.990 40.000 0.00 0.00 0.00 4.26
1430 1557 1.466167 CCTTGTTTGGTCTGCTCATCG 59.534 52.381 0.00 0.00 0.00 3.84
1441 1568 1.391485 CTGCTCATCGTGTTACAGCAC 59.609 52.381 0.00 0.00 35.17 4.40
1445 1572 2.919859 CTCATCGTGTTACAGCACTCTG 59.080 50.000 0.00 0.00 45.71 3.35
1501 1628 2.094597 ACTACTACAAATGCGCCGTACA 60.095 45.455 4.18 0.00 0.00 2.90
1518 1645 5.727791 GCCGTACATAAGATTGAACTTGCTG 60.728 44.000 0.00 0.00 0.00 4.41
1563 1690 8.801715 TTTCATTTCTGAAACTGATAAACAGC 57.198 30.769 4.73 0.00 44.46 4.40
1601 1817 6.701841 TCTGAAATGCATCGTACCTAAGATTC 59.298 38.462 0.00 0.00 0.00 2.52
1652 2059 9.635520 CTGCTTTCATTTCTGAAACTGATAAAT 57.364 29.630 4.73 0.00 44.46 1.40
1725 2132 2.063979 CCCTCCCGGTGTAGCATCA 61.064 63.158 0.00 0.00 0.00 3.07
1774 2181 3.250040 GCAGGCTCTCAACGTTTTTAGAA 59.750 43.478 0.00 0.00 0.00 2.10
1799 2206 3.386726 ACAACAGTAGCATAATAGCCGGA 59.613 43.478 5.05 0.00 34.23 5.14
1826 2233 4.002906 AGAGCACCACAAAAACGAGATA 57.997 40.909 0.00 0.00 0.00 1.98
1860 2268 2.887152 GTTTGCCTCAAAGTGTCTCCAT 59.113 45.455 0.00 0.00 33.82 3.41
1874 2282 4.175337 CCATGGACCACGGCCGAT 62.175 66.667 35.90 17.32 0.00 4.18
1875 2283 2.896854 CATGGACCACGGCCGATG 60.897 66.667 35.90 24.85 0.00 3.84
1959 2375 1.281899 CGCCTCCGATTGAAGAACTC 58.718 55.000 0.00 0.00 36.29 3.01
1992 2408 2.726821 CAGAAATAAGCTTGCCCCTCA 58.273 47.619 9.86 0.00 0.00 3.86
1995 2411 0.332632 AATAAGCTTGCCCCTCAGCA 59.667 50.000 9.86 0.00 42.17 4.41
2100 2516 3.408634 AGTTGGGTCATAAGGAAACACG 58.591 45.455 0.00 0.00 0.00 4.49
2132 2548 4.216902 GCAAGCTGCATTATGATATGTCCA 59.783 41.667 1.02 0.00 44.26 4.02
2140 2556 8.235359 TGCATTATGATATGTCCAAATCAACA 57.765 30.769 0.00 0.00 35.82 3.33
2289 2706 3.270027 CAGGCATGTCTAACGATGGAAA 58.730 45.455 0.00 0.00 0.00 3.13
2294 2711 5.163663 GGCATGTCTAACGATGGAAAAATGA 60.164 40.000 0.00 0.00 0.00 2.57
2296 2713 6.974622 GCATGTCTAACGATGGAAAAATGAAT 59.025 34.615 0.00 0.00 0.00 2.57
2297 2714 7.043854 GCATGTCTAACGATGGAAAAATGAATG 60.044 37.037 0.00 0.00 0.00 2.67
2300 2717 6.251376 GTCTAACGATGGAAAAATGAATGCAC 59.749 38.462 0.00 0.00 0.00 4.57
2304 2721 5.757320 ACGATGGAAAAATGAATGCACAAAA 59.243 32.000 0.00 0.00 0.00 2.44
2305 2722 6.427547 ACGATGGAAAAATGAATGCACAAAAT 59.572 30.769 0.00 0.00 0.00 1.82
2306 2723 6.739100 CGATGGAAAAATGAATGCACAAAATG 59.261 34.615 0.00 0.00 0.00 2.32
2307 2724 7.360185 CGATGGAAAAATGAATGCACAAAATGA 60.360 33.333 0.00 0.00 0.00 2.57
2308 2725 7.747155 TGGAAAAATGAATGCACAAAATGAT 57.253 28.000 0.00 0.00 0.00 2.45
2309 2726 7.585867 TGGAAAAATGAATGCACAAAATGATG 58.414 30.769 0.00 0.00 0.00 3.07
2310 2727 7.228906 TGGAAAAATGAATGCACAAAATGATGT 59.771 29.630 0.00 0.00 0.00 3.06
2311 2728 8.077386 GGAAAAATGAATGCACAAAATGATGTT 58.923 29.630 0.00 0.00 0.00 2.71
2374 2791 7.578020 GATGGCTTATCATGGATGGGGACAT 62.578 48.000 0.00 0.00 44.18 3.06
2609 3038 1.658994 CCTACGTGGTGTGTGTGTTT 58.341 50.000 0.00 0.00 0.00 2.83
2613 3042 1.735571 ACGTGGTGTGTGTGTTTTCTC 59.264 47.619 0.00 0.00 0.00 2.87
2637 3068 2.037687 TGAGCCCTTTGCATGGGG 59.962 61.111 22.11 19.77 44.71 4.96
2644 3075 2.676121 TTTGCATGGGGTCGCCTG 60.676 61.111 7.55 4.51 0.00 4.85
2721 3152 4.003788 CCCGGCCGTCAGTGTCTT 62.004 66.667 26.12 0.00 0.00 3.01
2727 3158 0.249911 GCCGTCAGTGTCTTTGGTCT 60.250 55.000 0.00 0.00 0.00 3.85
2865 3296 1.667154 CCTCGCCTCTGATGACGGAA 61.667 60.000 0.00 0.00 0.00 4.30
2875 3307 1.270094 TGATGACGGAAGCTTTGTCGT 60.270 47.619 20.91 20.91 38.62 4.34
2935 3368 3.154710 CACTGTAGCCATATCCCGTCTA 58.845 50.000 0.00 0.00 0.00 2.59
2955 3388 1.832883 ATCTGGTTAATGGCGCACAA 58.167 45.000 10.83 0.00 0.00 3.33
3004 3445 3.083997 GTCCCCCTCTGTGCCGAT 61.084 66.667 0.00 0.00 0.00 4.18
3015 3456 3.329889 TGCCGATTGGTCAGGGCT 61.330 61.111 0.00 0.00 45.75 5.19
3043 3484 0.107643 TTCTGGCATGTCACGGACAA 59.892 50.000 0.00 0.00 45.96 3.18
3053 3494 2.203877 ACGGACAAGTAGGGCCCA 60.204 61.111 27.56 7.27 0.00 5.36
3121 3562 2.440253 TCTGCCATGGATGATGTCATGA 59.560 45.455 18.40 0.00 42.25 3.07
3236 3678 4.162690 CTGTAGCCACGCCCCTCC 62.163 72.222 0.00 0.00 0.00 4.30
3272 3715 2.490991 GTGCTAACTTCAAGGGAACGT 58.509 47.619 0.00 0.00 0.00 3.99
3275 3718 2.549349 GCTAACTTCAAGGGAACGTGGA 60.549 50.000 0.00 0.00 40.50 4.02
3330 3786 3.385749 TTCTGGATTCCGCCGCCTC 62.386 63.158 0.00 0.00 0.00 4.70
3430 3888 3.565482 CCCGATGTCTTGAAATACCATGG 59.435 47.826 11.19 11.19 0.00 3.66
3671 4143 4.832823 TCTCTTCCAGTCACTATGTGTTGA 59.167 41.667 0.00 0.00 34.79 3.18
3756 4228 6.715347 AAAAATCCATATACTGTTCCCTGC 57.285 37.500 0.00 0.00 0.00 4.85
3876 4365 3.693085 ACATTGAAGCATGGCTAGAACTG 59.307 43.478 0.00 0.00 38.25 3.16
3886 4375 4.202245 TGGCTAGAACTGATGTTACCAC 57.798 45.455 0.00 0.00 36.39 4.16
3887 4376 3.838317 TGGCTAGAACTGATGTTACCACT 59.162 43.478 0.00 0.00 36.39 4.00
3888 4377 4.286032 TGGCTAGAACTGATGTTACCACTT 59.714 41.667 0.00 0.00 36.39 3.16
3889 4378 5.482526 TGGCTAGAACTGATGTTACCACTTA 59.517 40.000 0.00 0.00 36.39 2.24
3890 4379 5.811100 GGCTAGAACTGATGTTACCACTTAC 59.189 44.000 0.00 0.00 36.39 2.34
3891 4380 5.811100 GCTAGAACTGATGTTACCACTTACC 59.189 44.000 0.00 0.00 36.39 2.85
3892 4381 5.818678 AGAACTGATGTTACCACTTACCA 57.181 39.130 0.00 0.00 36.39 3.25
3949 4438 4.950050 ACCCTATTAATGACAAGCTCGAG 58.050 43.478 8.45 8.45 0.00 4.04
3950 4439 3.743396 CCCTATTAATGACAAGCTCGAGC 59.257 47.826 30.01 30.01 42.49 5.03
3951 4440 4.371786 CCTATTAATGACAAGCTCGAGCA 58.628 43.478 36.87 18.29 45.16 4.26
3952 4441 4.993584 CCTATTAATGACAAGCTCGAGCAT 59.006 41.667 36.87 25.10 45.16 3.79
3953 4442 6.159293 CCTATTAATGACAAGCTCGAGCATA 58.841 40.000 36.87 20.82 45.16 3.14
3954 4443 6.815641 CCTATTAATGACAAGCTCGAGCATAT 59.184 38.462 36.87 17.83 45.16 1.78
3955 4444 6.718454 ATTAATGACAAGCTCGAGCATATC 57.282 37.500 36.87 25.68 45.16 1.63
3956 4445 4.333913 AATGACAAGCTCGAGCATATCT 57.666 40.909 36.87 15.35 45.16 1.98
4187 4676 4.584327 AGGGAAAGAAAATGTTTGTCGG 57.416 40.909 0.00 0.00 0.00 4.79
4295 4784 5.474876 CCTCTGCTCTGAGGTTTTAAATGTT 59.525 40.000 6.83 0.00 46.33 2.71
4329 4851 2.622064 GGGGGCTGTAGTTATGACAG 57.378 55.000 0.00 0.00 45.90 3.51
4467 4989 2.248248 CTAGTTGAGGTGTCCAGGACA 58.752 52.381 19.21 19.21 40.50 4.02
4521 5043 8.864087 AGAAGGAATTCAGATTGTTTTAAAGCT 58.136 29.630 7.93 0.00 0.00 3.74
4630 5152 2.172679 TCACATACCGCTAACCTGTCA 58.827 47.619 0.00 0.00 0.00 3.58
4668 5190 8.192774 CACTTGTATGATTGAATAAATGCCAGT 58.807 33.333 0.00 0.00 0.00 4.00
4669 5191 9.407380 ACTTGTATGATTGAATAAATGCCAGTA 57.593 29.630 0.00 0.00 0.00 2.74
4675 5197 8.076910 TGATTGAATAAATGCCAGTACCAAAT 57.923 30.769 0.00 0.00 0.00 2.32
4691 5213 8.443937 CAGTACCAAATTCTCTAAAGCTGTTAC 58.556 37.037 0.00 0.00 0.00 2.50
4728 5250 8.674263 ATGCAAATTCTGTAACCAATTTTGAA 57.326 26.923 0.00 0.00 31.22 2.69
4756 5278 8.015658 AGTAAAATTCTTAATTCGTGTCACTGC 58.984 33.333 0.65 0.00 0.00 4.40
4757 5279 6.560253 AAATTCTTAATTCGTGTCACTGCT 57.440 33.333 0.65 0.00 0.00 4.24
4758 5280 4.990543 TTCTTAATTCGTGTCACTGCTG 57.009 40.909 0.65 0.00 0.00 4.41
4772 5294 6.147821 GTGTCACTGCTGTTCTTATGTGTATT 59.852 38.462 0.00 0.00 0.00 1.89
4789 5311 7.754851 TGTGTATTGTCACAGAGTACTTCTA 57.245 36.000 0.00 0.00 42.36 2.10
5420 5942 6.643770 GTGAAGAATGCACAGATTTTGATGTT 59.356 34.615 0.00 0.00 46.77 2.71
5677 6199 2.624838 CAGCTTCCCAACAAGATTGTGT 59.375 45.455 0.00 0.00 41.31 3.72
5696 6218 1.817099 GGAAGCTGGAGATGTGGCG 60.817 63.158 0.00 0.00 0.00 5.69
5714 6236 2.888447 GCCCTCCTGTCAGTGTGCT 61.888 63.158 0.00 0.00 0.00 4.40
5732 6254 0.252479 CTGAAGCTGGAGATGTGGCT 59.748 55.000 0.00 0.00 36.53 4.75
5740 6262 1.828768 GAGATGTGGCTCCCTCCTG 59.171 63.158 0.00 0.00 0.00 3.86
5745 6267 2.284921 TGGCTCCCTCCTGTCAGG 60.285 66.667 13.21 13.21 36.46 3.86
5754 6276 1.561542 CCTCCTGTCAGGGTAAAGCAT 59.438 52.381 19.11 0.00 35.59 3.79
5858 6383 9.542462 CCGGAAAAGTCTGACATTATAATAGAA 57.458 33.333 10.88 0.00 30.94 2.10
5891 6416 3.131396 CAGCACTACGGAAAGTTCAAGT 58.869 45.455 0.00 0.00 0.00 3.16
5905 6430 2.542020 TCAAGTCTTCGCATGGTCAA 57.458 45.000 0.00 0.00 0.00 3.18
5975 6500 3.055613 TCATCGAAATCTTTGCATGCG 57.944 42.857 14.09 0.00 0.00 4.73
6071 6596 3.842007 TCCACTAAACGGGTCAAAAGA 57.158 42.857 0.00 0.00 0.00 2.52
6253 6778 7.568199 ACAGTGTTGTCAGCTAAATTACTTT 57.432 32.000 0.00 0.00 29.46 2.66
6254 6779 7.417612 ACAGTGTTGTCAGCTAAATTACTTTG 58.582 34.615 0.00 0.00 29.46 2.77
6329 6854 9.624697 TTTGAAATGTTATGTTGTAGATCAAGC 57.375 29.630 0.00 0.00 36.66 4.01
6330 6855 8.565896 TGAAATGTTATGTTGTAGATCAAGCT 57.434 30.769 0.00 0.00 36.66 3.74
6331 6856 8.453320 TGAAATGTTATGTTGTAGATCAAGCTG 58.547 33.333 0.00 0.00 36.66 4.24
6332 6857 7.928307 AATGTTATGTTGTAGATCAAGCTGT 57.072 32.000 0.00 0.00 36.66 4.40
6333 6858 7.928307 ATGTTATGTTGTAGATCAAGCTGTT 57.072 32.000 0.00 0.00 36.66 3.16
6334 6859 7.132694 TGTTATGTTGTAGATCAAGCTGTTG 57.867 36.000 0.00 0.00 36.66 3.33
6335 6860 6.710295 TGTTATGTTGTAGATCAAGCTGTTGT 59.290 34.615 0.00 0.00 36.66 3.32
6336 6861 7.875554 TGTTATGTTGTAGATCAAGCTGTTGTA 59.124 33.333 0.00 0.00 36.66 2.41
6337 6862 8.717821 GTTATGTTGTAGATCAAGCTGTTGTAA 58.282 33.333 0.00 0.00 36.66 2.41
6338 6863 7.928307 ATGTTGTAGATCAAGCTGTTGTAAT 57.072 32.000 0.00 0.00 36.66 1.89
6339 6864 7.744087 TGTTGTAGATCAAGCTGTTGTAATT 57.256 32.000 0.00 0.00 36.66 1.40
6340 6865 8.165239 TGTTGTAGATCAAGCTGTTGTAATTT 57.835 30.769 0.00 0.00 36.66 1.82
6341 6866 8.289618 TGTTGTAGATCAAGCTGTTGTAATTTC 58.710 33.333 0.00 0.00 36.66 2.17
6342 6867 7.977789 TGTAGATCAAGCTGTTGTAATTTCA 57.022 32.000 0.00 0.00 34.98 2.69
6343 6868 7.806690 TGTAGATCAAGCTGTTGTAATTTCAC 58.193 34.615 0.00 0.00 34.98 3.18
6344 6869 6.882610 AGATCAAGCTGTTGTAATTTCACA 57.117 33.333 0.00 0.00 34.98 3.58
6345 6870 7.275888 AGATCAAGCTGTTGTAATTTCACAA 57.724 32.000 0.00 0.00 36.08 3.33
6346 6871 7.365741 AGATCAAGCTGTTGTAATTTCACAAG 58.634 34.615 0.00 0.00 39.02 3.16
6347 6872 6.691754 TCAAGCTGTTGTAATTTCACAAGA 57.308 33.333 0.00 0.00 39.02 3.02
6348 6873 7.275888 TCAAGCTGTTGTAATTTCACAAGAT 57.724 32.000 0.00 0.00 39.02 2.40
6349 6874 7.715657 TCAAGCTGTTGTAATTTCACAAGATT 58.284 30.769 0.00 0.00 39.02 2.40
6350 6875 8.845227 TCAAGCTGTTGTAATTTCACAAGATTA 58.155 29.630 0.00 0.00 39.02 1.75
6351 6876 8.905702 CAAGCTGTTGTAATTTCACAAGATTAC 58.094 33.333 0.00 0.00 39.02 1.89
6352 6877 8.396272 AGCTGTTGTAATTTCACAAGATTACT 57.604 30.769 7.49 0.00 39.02 2.24
6353 6878 8.507249 AGCTGTTGTAATTTCACAAGATTACTC 58.493 33.333 7.49 3.12 39.02 2.59
6354 6879 8.289618 GCTGTTGTAATTTCACAAGATTACTCA 58.710 33.333 7.49 6.32 39.02 3.41
6400 6925 9.658799 ATTCTACCATTTGACGAATATATCTGG 57.341 33.333 0.00 0.00 0.00 3.86
6401 6926 8.417273 TCTACCATTTGACGAATATATCTGGA 57.583 34.615 0.00 0.00 0.00 3.86
6402 6927 8.523658 TCTACCATTTGACGAATATATCTGGAG 58.476 37.037 0.00 0.00 0.00 3.86
6403 6928 7.303182 ACCATTTGACGAATATATCTGGAGA 57.697 36.000 0.00 0.00 0.00 3.71
6404 6929 7.382110 ACCATTTGACGAATATATCTGGAGAG 58.618 38.462 0.00 0.00 0.00 3.20
6405 6930 6.312426 CCATTTGACGAATATATCTGGAGAGC 59.688 42.308 0.00 0.00 0.00 4.09
6406 6931 6.405278 TTTGACGAATATATCTGGAGAGCA 57.595 37.500 0.00 0.00 0.00 4.26
6407 6932 6.596309 TTGACGAATATATCTGGAGAGCAT 57.404 37.500 0.00 0.00 0.00 3.79
6408 6933 7.703058 TTGACGAATATATCTGGAGAGCATA 57.297 36.000 0.00 0.00 0.00 3.14
6409 6934 7.888250 TGACGAATATATCTGGAGAGCATAT 57.112 36.000 0.00 0.00 0.00 1.78
6410 6935 7.710896 TGACGAATATATCTGGAGAGCATATG 58.289 38.462 0.00 0.00 0.00 1.78
6411 6936 7.340487 TGACGAATATATCTGGAGAGCATATGT 59.660 37.037 4.29 0.00 0.00 2.29
6412 6937 7.487484 ACGAATATATCTGGAGAGCATATGTG 58.513 38.462 4.29 0.00 0.00 3.21
6413 6938 7.123397 ACGAATATATCTGGAGAGCATATGTGT 59.877 37.037 4.29 0.00 0.00 3.72
6414 6939 7.434602 CGAATATATCTGGAGAGCATATGTGTG 59.565 40.741 4.29 0.00 0.00 3.82
6415 6940 7.730672 ATATATCTGGAGAGCATATGTGTGT 57.269 36.000 4.29 0.00 0.00 3.72
6416 6941 8.829373 ATATATCTGGAGAGCATATGTGTGTA 57.171 34.615 4.29 0.00 0.00 2.90
6417 6942 7.730672 ATATCTGGAGAGCATATGTGTGTAT 57.269 36.000 4.29 0.00 0.00 2.29
6418 6943 5.205759 TCTGGAGAGCATATGTGTGTATG 57.794 43.478 4.29 0.00 35.61 2.39
6419 6944 4.651045 TCTGGAGAGCATATGTGTGTATGT 59.349 41.667 4.29 0.00 35.09 2.29
6420 6945 5.833131 TCTGGAGAGCATATGTGTGTATGTA 59.167 40.000 4.29 0.00 35.09 2.29
6421 6946 6.494835 TCTGGAGAGCATATGTGTGTATGTAT 59.505 38.462 4.29 0.00 35.09 2.29
6422 6947 7.015584 TCTGGAGAGCATATGTGTGTATGTATT 59.984 37.037 4.29 0.00 35.09 1.89
6423 6948 7.508687 TGGAGAGCATATGTGTGTATGTATTT 58.491 34.615 4.29 0.00 35.09 1.40
6424 6949 7.442062 TGGAGAGCATATGTGTGTATGTATTTG 59.558 37.037 4.29 0.00 35.09 2.32
6425 6950 7.657354 GGAGAGCATATGTGTGTATGTATTTGA 59.343 37.037 4.29 0.00 35.09 2.69
6426 6951 9.212641 GAGAGCATATGTGTGTATGTATTTGAT 57.787 33.333 4.29 0.00 35.09 2.57
6538 7066 0.250553 TTGGTAGAAACCTGTGGCCG 60.251 55.000 0.00 0.00 46.91 6.13
6547 7075 3.052082 CTGTGGCCGAACTGCTGG 61.052 66.667 0.00 0.00 0.00 4.85
6570 7098 8.313944 TGGCAACTACTCTATTGGTTATAAGA 57.686 34.615 0.00 0.00 37.61 2.10
6584 7112 7.896383 TGGTTATAAGAAAAATCTGGATGGG 57.104 36.000 0.00 0.00 0.00 4.00
6638 7166 0.169672 CAGAAATCTGTGGCCAAGCG 59.830 55.000 7.24 0.00 39.09 4.68
6639 7167 0.250901 AGAAATCTGTGGCCAAGCGT 60.251 50.000 7.24 0.00 0.00 5.07
6640 7168 0.109597 GAAATCTGTGGCCAAGCGTG 60.110 55.000 7.24 0.00 0.00 5.34
6642 7170 3.925630 ATCTGTGGCCAAGCGTGGG 62.926 63.158 20.72 3.78 46.09 4.61
6677 7205 9.901651 TGTCCTATATAGGTAAATTAACTGGGA 57.098 33.333 25.06 1.62 44.02 4.37
6679 7207 9.901651 TCCTATATAGGTAAATTAACTGGGACA 57.098 33.333 25.06 0.38 44.02 4.02
6680 7208 9.939802 CCTATATAGGTAAATTAACTGGGACAC 57.060 37.037 19.30 0.00 38.69 3.67
6681 7209 9.939802 CTATATAGGTAAATTAACTGGGACACC 57.060 37.037 0.00 0.00 37.24 4.16
6682 7210 6.903340 ATAGGTAAATTAACTGGGACACCT 57.097 37.500 0.00 0.00 38.63 4.00
6683 7211 9.678981 ATATAGGTAAATTAACTGGGACACCTA 57.321 33.333 0.00 0.00 40.61 3.08
6684 7212 6.309389 AGGTAAATTAACTGGGACACCTAG 57.691 41.667 0.00 0.00 37.76 3.02
6685 7213 5.191124 AGGTAAATTAACTGGGACACCTAGG 59.809 44.000 7.41 7.41 37.76 3.02
6686 7214 5.045359 GGTAAATTAACTGGGACACCTAGGT 60.045 44.000 9.21 9.21 37.76 3.08
6704 7232 3.122850 GCCCGGGCATCTTGATTG 58.877 61.111 40.73 0.15 41.49 2.67
6705 7233 1.754234 GCCCGGGCATCTTGATTGT 60.754 57.895 40.73 0.00 41.49 2.71
6706 7234 1.322538 GCCCGGGCATCTTGATTGTT 61.323 55.000 40.73 0.00 41.49 2.83
6707 7235 1.185315 CCCGGGCATCTTGATTGTTT 58.815 50.000 8.08 0.00 0.00 2.83
6708 7236 1.550072 CCCGGGCATCTTGATTGTTTT 59.450 47.619 8.08 0.00 0.00 2.43
6709 7237 2.757868 CCCGGGCATCTTGATTGTTTTA 59.242 45.455 8.08 0.00 0.00 1.52
6710 7238 3.181487 CCCGGGCATCTTGATTGTTTTAG 60.181 47.826 8.08 0.00 0.00 1.85
6711 7239 3.181487 CCGGGCATCTTGATTGTTTTAGG 60.181 47.826 0.00 0.00 0.00 2.69
6712 7240 3.443681 CGGGCATCTTGATTGTTTTAGGT 59.556 43.478 0.00 0.00 0.00 3.08
6713 7241 4.638421 CGGGCATCTTGATTGTTTTAGGTA 59.362 41.667 0.00 0.00 0.00 3.08
6714 7242 5.299279 CGGGCATCTTGATTGTTTTAGGTAT 59.701 40.000 0.00 0.00 0.00 2.73
6715 7243 6.507023 GGGCATCTTGATTGTTTTAGGTATG 58.493 40.000 0.00 0.00 0.00 2.39
6716 7244 6.096846 GGGCATCTTGATTGTTTTAGGTATGT 59.903 38.462 0.00 0.00 0.00 2.29
6717 7245 7.284489 GGGCATCTTGATTGTTTTAGGTATGTA 59.716 37.037 0.00 0.00 0.00 2.29
6718 7246 8.129211 GGCATCTTGATTGTTTTAGGTATGTAC 58.871 37.037 0.00 0.00 0.00 2.90
6719 7247 8.673711 GCATCTTGATTGTTTTAGGTATGTACA 58.326 33.333 0.00 0.00 0.00 2.90
6721 7249 8.263940 TCTTGATTGTTTTAGGTATGTACAGC 57.736 34.615 0.33 0.00 0.00 4.40
6722 7250 6.995511 TGATTGTTTTAGGTATGTACAGCC 57.004 37.500 0.33 6.43 0.00 4.85
6723 7251 5.583061 TGATTGTTTTAGGTATGTACAGCCG 59.417 40.000 0.33 0.00 0.00 5.52
6724 7252 3.264104 TGTTTTAGGTATGTACAGCCGC 58.736 45.455 0.33 0.00 0.00 6.53
6725 7253 3.264104 GTTTTAGGTATGTACAGCCGCA 58.736 45.455 0.33 0.00 0.00 5.69
6726 7254 2.589798 TTAGGTATGTACAGCCGCAC 57.410 50.000 0.33 0.00 0.00 5.34
6727 7255 1.476477 TAGGTATGTACAGCCGCACA 58.524 50.000 0.33 0.00 0.00 4.57
6728 7256 0.611200 AGGTATGTACAGCCGCACAA 59.389 50.000 0.33 0.00 0.00 3.33
6729 7257 1.209504 AGGTATGTACAGCCGCACAAT 59.790 47.619 0.33 0.00 0.00 2.71
6730 7258 1.330521 GGTATGTACAGCCGCACAATG 59.669 52.381 0.33 0.00 0.00 2.82
6731 7259 2.276201 GTATGTACAGCCGCACAATGA 58.724 47.619 0.33 0.00 0.00 2.57
6732 7260 1.819928 ATGTACAGCCGCACAATGAA 58.180 45.000 0.33 0.00 0.00 2.57
6733 7261 1.819928 TGTACAGCCGCACAATGAAT 58.180 45.000 0.00 0.00 0.00 2.57
6734 7262 1.468127 TGTACAGCCGCACAATGAATG 59.532 47.619 0.00 0.00 0.00 2.67
6735 7263 1.468520 GTACAGCCGCACAATGAATGT 59.531 47.619 0.00 0.00 45.34 2.71
6736 7264 0.961019 ACAGCCGCACAATGAATGTT 59.039 45.000 0.00 0.00 41.46 2.71
6737 7265 1.340889 ACAGCCGCACAATGAATGTTT 59.659 42.857 0.00 0.00 41.46 2.83
6738 7266 1.722464 CAGCCGCACAATGAATGTTTG 59.278 47.619 0.00 0.00 41.46 2.93
6739 7267 1.612950 AGCCGCACAATGAATGTTTGA 59.387 42.857 0.00 0.00 41.46 2.69
6740 7268 2.231964 AGCCGCACAATGAATGTTTGAT 59.768 40.909 0.00 0.00 41.46 2.57
6741 7269 2.995258 GCCGCACAATGAATGTTTGATT 59.005 40.909 0.00 0.00 41.46 2.57
6742 7270 3.432933 GCCGCACAATGAATGTTTGATTT 59.567 39.130 0.00 0.00 41.46 2.17
6743 7271 4.667161 GCCGCACAATGAATGTTTGATTTG 60.667 41.667 0.00 0.00 41.46 2.32
6744 7272 4.448395 CCGCACAATGAATGTTTGATTTGT 59.552 37.500 0.00 0.00 41.46 2.83
6745 7273 5.050227 CCGCACAATGAATGTTTGATTTGTT 60.050 36.000 0.00 0.00 41.46 2.83
6746 7274 6.420588 CGCACAATGAATGTTTGATTTGTTT 58.579 32.000 0.00 0.00 41.46 2.83
6747 7275 6.570789 CGCACAATGAATGTTTGATTTGTTTC 59.429 34.615 0.00 0.00 41.46 2.78
6748 7276 6.852345 GCACAATGAATGTTTGATTTGTTTCC 59.148 34.615 0.00 0.00 41.46 3.13
6749 7277 7.254863 GCACAATGAATGTTTGATTTGTTTCCT 60.255 33.333 0.00 0.00 41.46 3.36
6750 7278 9.258826 CACAATGAATGTTTGATTTGTTTCCTA 57.741 29.630 0.00 0.00 41.46 2.94
6751 7279 9.829507 ACAATGAATGTTTGATTTGTTTCCTAA 57.170 25.926 0.00 0.00 40.06 2.69
6767 7295 9.859427 TTGTTTCCTAATTATTCTTCATGCAAG 57.141 29.630 0.00 0.00 0.00 4.01
6768 7296 9.241919 TGTTTCCTAATTATTCTTCATGCAAGA 57.758 29.630 0.00 0.00 39.56 3.02
6769 7297 9.508567 GTTTCCTAATTATTCTTCATGCAAGAC 57.491 33.333 0.00 0.00 41.13 3.01
6770 7298 9.466497 TTTCCTAATTATTCTTCATGCAAGACT 57.534 29.630 0.00 5.49 41.13 3.24
6771 7299 9.466497 TTCCTAATTATTCTTCATGCAAGACTT 57.534 29.630 0.00 0.00 41.13 3.01
6772 7300 9.466497 TCCTAATTATTCTTCATGCAAGACTTT 57.534 29.630 0.00 3.41 41.13 2.66
6773 7301 9.727627 CCTAATTATTCTTCATGCAAGACTTTC 57.272 33.333 0.00 0.00 41.13 2.62
6774 7302 9.727627 CTAATTATTCTTCATGCAAGACTTTCC 57.272 33.333 0.00 0.00 41.13 3.13
6775 7303 4.691860 ATTCTTCATGCAAGACTTTCCG 57.308 40.909 0.00 0.00 41.13 4.30
6776 7304 3.126001 TCTTCATGCAAGACTTTCCGT 57.874 42.857 0.00 0.00 36.08 4.69
6777 7305 2.807967 TCTTCATGCAAGACTTTCCGTG 59.192 45.455 0.00 0.00 36.08 4.94
6778 7306 2.254546 TCATGCAAGACTTTCCGTGT 57.745 45.000 0.00 0.00 0.00 4.49
6779 7307 2.571212 TCATGCAAGACTTTCCGTGTT 58.429 42.857 0.00 0.00 0.00 3.32
6780 7308 2.948979 TCATGCAAGACTTTCCGTGTTT 59.051 40.909 0.00 0.00 0.00 2.83
6781 7309 4.130857 TCATGCAAGACTTTCCGTGTTTA 58.869 39.130 0.00 0.00 0.00 2.01
6782 7310 3.955771 TGCAAGACTTTCCGTGTTTAC 57.044 42.857 0.00 0.00 0.00 2.01
6783 7311 3.271729 TGCAAGACTTTCCGTGTTTACA 58.728 40.909 0.00 0.00 0.00 2.41
6784 7312 3.880490 TGCAAGACTTTCCGTGTTTACAT 59.120 39.130 0.00 0.00 0.00 2.29
6785 7313 4.336993 TGCAAGACTTTCCGTGTTTACATT 59.663 37.500 0.00 0.00 0.00 2.71
6786 7314 5.163602 TGCAAGACTTTCCGTGTTTACATTT 60.164 36.000 0.00 0.00 0.00 2.32
6787 7315 5.746721 GCAAGACTTTCCGTGTTTACATTTT 59.253 36.000 0.00 0.00 0.00 1.82
6788 7316 6.913673 GCAAGACTTTCCGTGTTTACATTTTA 59.086 34.615 0.00 0.00 0.00 1.52
6789 7317 7.593644 GCAAGACTTTCCGTGTTTACATTTTAT 59.406 33.333 0.00 0.00 0.00 1.40
6790 7318 9.458374 CAAGACTTTCCGTGTTTACATTTTATT 57.542 29.630 0.00 0.00 0.00 1.40
6794 7322 9.804758 ACTTTCCGTGTTTACATTTTATTTTCA 57.195 25.926 0.00 0.00 0.00 2.69
6815 7343 9.935241 TTTTCATTTTTAACTATTAGGCATGCA 57.065 25.926 21.36 0.00 0.00 3.96
6816 7344 9.935241 TTTCATTTTTAACTATTAGGCATGCAA 57.065 25.926 21.36 6.46 0.00 4.08
6817 7345 9.585099 TTCATTTTTAACTATTAGGCATGCAAG 57.415 29.630 21.36 10.46 0.00 4.01
6818 7346 8.965819 TCATTTTTAACTATTAGGCATGCAAGA 58.034 29.630 21.36 4.16 0.00 3.02
6819 7347 9.023967 CATTTTTAACTATTAGGCATGCAAGAC 57.976 33.333 21.36 1.15 0.00 3.01
6820 7348 7.938140 TTTTAACTATTAGGCATGCAAGACT 57.062 32.000 21.36 1.45 0.00 3.24
6821 7349 7.938140 TTTAACTATTAGGCATGCAAGACTT 57.062 32.000 21.36 3.95 0.00 3.01
6822 7350 7.938140 TTAACTATTAGGCATGCAAGACTTT 57.062 32.000 21.36 6.43 0.00 2.66
6823 7351 6.442513 AACTATTAGGCATGCAAGACTTTC 57.557 37.500 21.36 0.00 0.00 2.62
6824 7352 5.749462 ACTATTAGGCATGCAAGACTTTCT 58.251 37.500 21.36 7.05 0.00 2.52
6825 7353 4.978083 ATTAGGCATGCAAGACTTTCTG 57.022 40.909 21.36 0.00 0.00 3.02
6826 7354 2.283145 AGGCATGCAAGACTTTCTGT 57.717 45.000 21.36 0.00 0.00 3.41
6827 7355 1.884579 AGGCATGCAAGACTTTCTGTG 59.115 47.619 21.36 0.00 0.00 3.66
6828 7356 1.610522 GGCATGCAAGACTTTCTGTGT 59.389 47.619 21.36 0.00 0.00 3.72
6829 7357 2.035066 GGCATGCAAGACTTTCTGTGTT 59.965 45.455 21.36 0.00 31.89 3.32
6830 7358 3.491447 GGCATGCAAGACTTTCTGTGTTT 60.491 43.478 21.36 0.00 28.98 2.83
6831 7359 4.261572 GGCATGCAAGACTTTCTGTGTTTA 60.262 41.667 21.36 0.00 28.98 2.01
6832 7360 4.676924 GCATGCAAGACTTTCTGTGTTTAC 59.323 41.667 14.21 0.00 28.98 2.01
6833 7361 5.733091 GCATGCAAGACTTTCTGTGTTTACA 60.733 40.000 14.21 0.00 35.08 2.41
6834 7362 6.441274 CATGCAAGACTTTCTGTGTTTACAT 58.559 36.000 0.00 0.00 35.97 2.29
6835 7363 6.449635 TGCAAGACTTTCTGTGTTTACATT 57.550 33.333 0.00 0.00 35.97 2.71
6836 7364 6.862209 TGCAAGACTTTCTGTGTTTACATTT 58.138 32.000 0.00 0.00 35.97 2.32
6837 7365 7.319646 TGCAAGACTTTCTGTGTTTACATTTT 58.680 30.769 0.00 0.00 35.97 1.82
6838 7366 8.462811 TGCAAGACTTTCTGTGTTTACATTTTA 58.537 29.630 0.00 0.00 35.97 1.52
6839 7367 9.463443 GCAAGACTTTCTGTGTTTACATTTTAT 57.537 29.630 0.00 0.00 35.97 1.40
6865 7393 9.935241 TTTTCATTTTTAACTATTAGGCATGCA 57.065 25.926 21.36 0.00 0.00 3.96
6866 7394 9.935241 TTTCATTTTTAACTATTAGGCATGCAA 57.065 25.926 21.36 6.46 0.00 4.08
6867 7395 9.585099 TTCATTTTTAACTATTAGGCATGCAAG 57.415 29.630 21.36 10.46 0.00 4.01
6868 7396 8.965819 TCATTTTTAACTATTAGGCATGCAAGA 58.034 29.630 21.36 4.16 0.00 3.02
6869 7397 9.023967 CATTTTTAACTATTAGGCATGCAAGAC 57.976 33.333 21.36 1.15 0.00 3.01
6870 7398 7.938140 TTTTAACTATTAGGCATGCAAGACT 57.062 32.000 21.36 1.45 0.00 3.24
6871 7399 7.938140 TTTAACTATTAGGCATGCAAGACTT 57.062 32.000 21.36 3.95 0.00 3.01
6872 7400 5.824904 AACTATTAGGCATGCAAGACTTG 57.175 39.130 21.36 11.02 0.00 3.16
6889 7417 8.984891 CAAGACTTGCCATACAATAAATCAAA 57.015 30.769 1.43 0.00 37.72 2.69
6890 7418 9.079833 CAAGACTTGCCATACAATAAATCAAAG 57.920 33.333 1.43 0.00 37.72 2.77
6891 7419 8.353423 AGACTTGCCATACAATAAATCAAAGT 57.647 30.769 0.00 0.00 37.72 2.66
6892 7420 9.461312 AGACTTGCCATACAATAAATCAAAGTA 57.539 29.630 0.00 0.00 37.72 2.24
6948 7476 9.361712 GTATCTAATACGCGTATTTTTGTTTCC 57.638 33.333 39.94 20.95 37.07 3.13
6949 7477 7.599630 TCTAATACGCGTATTTTTGTTTCCT 57.400 32.000 39.94 20.48 37.07 3.36
6950 7478 8.700722 TCTAATACGCGTATTTTTGTTTCCTA 57.299 30.769 39.94 21.91 37.07 2.94
6951 7479 9.149225 TCTAATACGCGTATTTTTGTTTCCTAA 57.851 29.630 39.94 21.47 37.07 2.69
6952 7480 9.202545 CTAATACGCGTATTTTTGTTTCCTAAC 57.797 33.333 39.94 0.00 37.07 2.34
6953 7481 5.678132 ACGCGTATTTTTGTTTCCTAACT 57.322 34.783 11.67 0.00 35.24 2.24
6954 7482 6.783892 ACGCGTATTTTTGTTTCCTAACTA 57.216 33.333 11.67 0.00 35.24 2.24
6955 7483 7.368480 ACGCGTATTTTTGTTTCCTAACTAT 57.632 32.000 11.67 0.00 35.24 2.12
6956 7484 7.458677 ACGCGTATTTTTGTTTCCTAACTATC 58.541 34.615 11.67 0.00 35.24 2.08
6957 7485 7.332678 ACGCGTATTTTTGTTTCCTAACTATCT 59.667 33.333 11.67 0.00 35.24 1.98
6958 7486 8.810427 CGCGTATTTTTGTTTCCTAACTATCTA 58.190 33.333 0.00 0.00 35.24 1.98
6965 7493 9.603921 TTTTGTTTCCTAACTATCTAATACGGG 57.396 33.333 0.00 0.00 35.24 5.28
6966 7494 7.902920 TGTTTCCTAACTATCTAATACGGGT 57.097 36.000 0.00 0.00 35.24 5.28
6967 7495 8.995027 TGTTTCCTAACTATCTAATACGGGTA 57.005 34.615 0.00 0.00 35.24 3.69
6968 7496 9.592196 TGTTTCCTAACTATCTAATACGGGTAT 57.408 33.333 0.00 0.00 35.24 2.73
7035 7563 6.567602 ACCCAGTAAATTATTCTCTGAGCT 57.432 37.500 0.00 0.00 0.00 4.09
7036 7564 7.676683 ACCCAGTAAATTATTCTCTGAGCTA 57.323 36.000 0.00 0.00 0.00 3.32
7037 7565 8.268878 ACCCAGTAAATTATTCTCTGAGCTAT 57.731 34.615 0.00 0.00 0.00 2.97
7038 7566 8.718656 ACCCAGTAAATTATTCTCTGAGCTATT 58.281 33.333 0.00 0.00 0.00 1.73
7051 7579 9.871238 TTCTCTGAGCTATTACGTTCTATTTTT 57.129 29.630 0.00 0.00 0.00 1.94
7108 7636 9.715121 ATTAACGAAATTATGTACATATCGGGT 57.285 29.630 27.97 21.15 31.34 5.28
7110 7638 8.524870 AACGAAATTATGTACATATCGGGTAC 57.475 34.615 27.97 13.12 41.11 3.34
7111 7639 6.803320 ACGAAATTATGTACATATCGGGTACG 59.197 38.462 27.97 21.44 43.10 3.67
7112 7640 6.803320 CGAAATTATGTACATATCGGGTACGT 59.197 38.462 21.58 0.00 43.10 3.57
7113 7641 7.962373 CGAAATTATGTACATATCGGGTACGTA 59.038 37.037 21.58 0.00 43.10 3.57
7114 7642 9.793252 GAAATTATGTACATATCGGGTACGTAT 57.207 33.333 16.16 0.52 43.10 3.06
7119 7647 7.786178 TGTACATATCGGGTACGTATATACC 57.214 40.000 7.30 0.00 43.10 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.674177 CGTTCCGAACCACTGAGCTTAT 60.674 50.000 5.67 0.00 0.00 1.73
2 3 0.600255 CGTTCCGAACCACTGAGCTT 60.600 55.000 5.67 0.00 0.00 3.74
3 4 1.006102 CGTTCCGAACCACTGAGCT 60.006 57.895 5.67 0.00 0.00 4.09
5 6 0.944311 CACCGTTCCGAACCACTGAG 60.944 60.000 5.67 0.00 0.00 3.35
6 7 1.068417 CACCGTTCCGAACCACTGA 59.932 57.895 5.67 0.00 0.00 3.41
7 8 1.959226 CCACCGTTCCGAACCACTG 60.959 63.158 5.67 0.00 0.00 3.66
8 9 2.424302 CCACCGTTCCGAACCACT 59.576 61.111 5.67 0.00 0.00 4.00
9 10 3.351416 GCCACCGTTCCGAACCAC 61.351 66.667 5.67 0.00 0.00 4.16
10 11 3.402095 TTGCCACCGTTCCGAACCA 62.402 57.895 5.67 0.00 0.00 3.67
11 12 2.592287 TTGCCACCGTTCCGAACC 60.592 61.111 5.67 0.00 0.00 3.62
12 13 1.566018 CTCTTGCCACCGTTCCGAAC 61.566 60.000 0.76 0.76 0.00 3.95
13 14 1.301401 CTCTTGCCACCGTTCCGAA 60.301 57.895 0.00 0.00 0.00 4.30
14 15 2.342279 CTCTTGCCACCGTTCCGA 59.658 61.111 0.00 0.00 0.00 4.55
15 16 2.521958 ATCCTCTTGCCACCGTTCCG 62.522 60.000 0.00 0.00 0.00 4.30
16 17 0.539986 TATCCTCTTGCCACCGTTCC 59.460 55.000 0.00 0.00 0.00 3.62
17 18 1.207329 AGTATCCTCTTGCCACCGTTC 59.793 52.381 0.00 0.00 0.00 3.95
18 19 1.276622 AGTATCCTCTTGCCACCGTT 58.723 50.000 0.00 0.00 0.00 4.44
19 20 1.755380 GTAGTATCCTCTTGCCACCGT 59.245 52.381 0.00 0.00 0.00 4.83
20 21 1.754803 TGTAGTATCCTCTTGCCACCG 59.245 52.381 0.00 0.00 0.00 4.94
21 22 2.483889 GCTGTAGTATCCTCTTGCCACC 60.484 54.545 0.00 0.00 0.00 4.61
22 23 2.168521 TGCTGTAGTATCCTCTTGCCAC 59.831 50.000 0.00 0.00 0.00 5.01
23 24 2.466846 TGCTGTAGTATCCTCTTGCCA 58.533 47.619 0.00 0.00 0.00 4.92
24 25 3.543680 TTGCTGTAGTATCCTCTTGCC 57.456 47.619 0.00 0.00 0.00 4.52
25 26 4.201724 CGTTTTGCTGTAGTATCCTCTTGC 60.202 45.833 0.00 0.00 0.00 4.01
26 27 4.929808 ACGTTTTGCTGTAGTATCCTCTTG 59.070 41.667 0.00 0.00 0.00 3.02
27 28 5.148651 ACGTTTTGCTGTAGTATCCTCTT 57.851 39.130 0.00 0.00 0.00 2.85
28 29 4.803098 ACGTTTTGCTGTAGTATCCTCT 57.197 40.909 0.00 0.00 0.00 3.69
29 30 5.407387 TGAAACGTTTTGCTGTAGTATCCTC 59.593 40.000 15.89 0.00 0.00 3.71
30 31 5.302360 TGAAACGTTTTGCTGTAGTATCCT 58.698 37.500 15.89 0.00 0.00 3.24
31 32 5.600908 TGAAACGTTTTGCTGTAGTATCC 57.399 39.130 15.89 0.00 0.00 2.59
32 33 5.080068 GCTGAAACGTTTTGCTGTAGTATC 58.920 41.667 23.50 6.90 0.00 2.24
33 34 4.513692 TGCTGAAACGTTTTGCTGTAGTAT 59.486 37.500 27.61 1.73 0.00 2.12
34 35 3.872182 TGCTGAAACGTTTTGCTGTAGTA 59.128 39.130 27.61 13.01 0.00 1.82
35 36 2.680841 TGCTGAAACGTTTTGCTGTAGT 59.319 40.909 27.61 2.85 0.00 2.73
36 37 3.332761 TGCTGAAACGTTTTGCTGTAG 57.667 42.857 27.61 16.11 0.00 2.74
37 38 3.430931 GTTGCTGAAACGTTTTGCTGTA 58.569 40.909 27.61 14.04 0.00 2.74
38 39 2.258755 GTTGCTGAAACGTTTTGCTGT 58.741 42.857 27.61 4.82 0.00 4.40
39 40 1.587946 GGTTGCTGAAACGTTTTGCTG 59.412 47.619 27.61 16.93 39.91 4.41
40 41 1.470805 GGGTTGCTGAAACGTTTTGCT 60.471 47.619 27.61 5.83 39.91 3.91
41 42 0.927537 GGGTTGCTGAAACGTTTTGC 59.072 50.000 23.81 23.81 39.91 3.68
42 43 1.196200 CGGGTTGCTGAAACGTTTTG 58.804 50.000 15.89 12.17 39.91 2.44
43 44 0.526739 GCGGGTTGCTGAAACGTTTT 60.527 50.000 15.89 0.00 39.91 2.43
44 45 1.065109 GCGGGTTGCTGAAACGTTT 59.935 52.632 14.57 14.57 39.91 3.60
45 46 2.719354 GCGGGTTGCTGAAACGTT 59.281 55.556 0.00 0.00 39.91 3.99
46 47 3.645975 CGCGGGTTGCTGAAACGT 61.646 61.111 0.00 0.00 43.27 3.99
47 48 4.383602 CCGCGGGTTGCTGAAACG 62.384 66.667 20.10 0.00 43.27 3.60
48 49 4.700365 GCCGCGGGTTGCTGAAAC 62.700 66.667 29.38 1.03 43.27 2.78
108 109 2.436646 AAGAGGGGCATTCACGCG 60.437 61.111 3.53 3.53 0.00 6.01
109 110 1.675641 ACAAGAGGGGCATTCACGC 60.676 57.895 0.00 0.00 0.00 5.34
110 111 0.606401 ACACAAGAGGGGCATTCACG 60.606 55.000 0.00 0.00 0.00 4.35
111 112 1.620822 AACACAAGAGGGGCATTCAC 58.379 50.000 0.00 0.00 0.00 3.18
112 113 2.364970 CAAAACACAAGAGGGGCATTCA 59.635 45.455 0.00 0.00 0.00 2.57
113 114 2.365293 ACAAAACACAAGAGGGGCATTC 59.635 45.455 0.00 0.00 0.00 2.67
114 115 2.102925 CACAAAACACAAGAGGGGCATT 59.897 45.455 0.00 0.00 0.00 3.56
115 116 1.688197 CACAAAACACAAGAGGGGCAT 59.312 47.619 0.00 0.00 0.00 4.40
116 117 1.110442 CACAAAACACAAGAGGGGCA 58.890 50.000 0.00 0.00 0.00 5.36
117 118 0.249447 GCACAAAACACAAGAGGGGC 60.249 55.000 0.00 0.00 0.00 5.80
118 119 0.030638 CGCACAAAACACAAGAGGGG 59.969 55.000 0.00 0.00 0.00 4.79
119 120 0.594796 GCGCACAAAACACAAGAGGG 60.595 55.000 0.30 0.00 0.00 4.30
120 121 0.100325 TGCGCACAAAACACAAGAGG 59.900 50.000 5.66 0.00 0.00 3.69
121 122 1.202177 ACTGCGCACAAAACACAAGAG 60.202 47.619 5.66 0.00 0.00 2.85
122 123 0.808125 ACTGCGCACAAAACACAAGA 59.192 45.000 5.66 0.00 0.00 3.02
123 124 2.108700 GTACTGCGCACAAAACACAAG 58.891 47.619 5.66 0.00 0.00 3.16
124 125 1.468914 TGTACTGCGCACAAAACACAA 59.531 42.857 5.66 0.00 0.00 3.33
125 126 1.063321 CTGTACTGCGCACAAAACACA 59.937 47.619 5.66 3.43 0.00 3.72
126 127 1.596954 CCTGTACTGCGCACAAAACAC 60.597 52.381 5.66 0.00 0.00 3.32
127 128 0.660488 CCTGTACTGCGCACAAAACA 59.340 50.000 5.66 7.59 0.00 2.83
128 129 0.941542 TCCTGTACTGCGCACAAAAC 59.058 50.000 5.66 2.59 0.00 2.43
308 312 1.780309 TCCTCCAATGTCCAAACACCT 59.220 47.619 0.00 0.00 38.48 4.00
397 403 8.788806 TCTGAGAAACTTTTGAAAACAACACTA 58.211 29.630 0.00 0.00 0.00 2.74
429 435 8.273780 AGCTCGTGATGAAAAAGATAGATTTT 57.726 30.769 0.00 0.00 33.86 1.82
434 440 5.355596 AGGAGCTCGTGATGAAAAAGATAG 58.644 41.667 8.40 0.00 0.00 2.08
464 470 5.008217 CGTGTAAAATTTGGTGAAGTCTGGA 59.992 40.000 0.00 0.00 0.00 3.86
468 474 5.209977 GTCCGTGTAAAATTTGGTGAAGTC 58.790 41.667 0.00 0.00 0.00 3.01
538 544 7.642586 GTGAACAGTAAAAGCGTTTGAAATAGT 59.357 33.333 7.95 0.00 0.00 2.12
551 558 2.161609 GGCCGGATGTGAACAGTAAAAG 59.838 50.000 5.05 0.00 0.00 2.27
718 815 0.886490 AGTGCTCTGTCTTTTGCCCG 60.886 55.000 0.00 0.00 0.00 6.13
782 879 1.444383 GCTAACTTGCCGCCTTTGC 60.444 57.895 0.00 0.00 0.00 3.68
898 996 4.202182 TGGGTCGGTTTTATATTCCTCGAG 60.202 45.833 5.13 5.13 0.00 4.04
972 1077 2.403259 GGAACTTTGTGAAATTGCGGG 58.597 47.619 0.00 0.00 0.00 6.13
1223 1348 3.190535 AGCAAATTCAAAATCTACCGCGT 59.809 39.130 4.92 0.00 0.00 6.01
1243 1369 1.064654 GAAATCTCAATCCACCGCAGC 59.935 52.381 0.00 0.00 0.00 5.25
1277 1403 3.357079 GGTCCAGCTGCAACACGG 61.357 66.667 8.66 0.00 0.00 4.94
1398 1525 7.038659 CAGACCAAACAAGGATAAAACAACAA 58.961 34.615 0.00 0.00 0.00 2.83
1399 1526 6.568869 CAGACCAAACAAGGATAAAACAACA 58.431 36.000 0.00 0.00 0.00 3.33
1400 1527 5.462068 GCAGACCAAACAAGGATAAAACAAC 59.538 40.000 0.00 0.00 0.00 3.32
1401 1528 5.362430 AGCAGACCAAACAAGGATAAAACAA 59.638 36.000 0.00 0.00 0.00 2.83
1402 1529 4.892934 AGCAGACCAAACAAGGATAAAACA 59.107 37.500 0.00 0.00 0.00 2.83
1403 1530 5.009610 TGAGCAGACCAAACAAGGATAAAAC 59.990 40.000 0.00 0.00 0.00 2.43
1404 1531 5.136828 TGAGCAGACCAAACAAGGATAAAA 58.863 37.500 0.00 0.00 0.00 1.52
1405 1532 4.724399 TGAGCAGACCAAACAAGGATAAA 58.276 39.130 0.00 0.00 0.00 1.40
1406 1533 4.365514 TGAGCAGACCAAACAAGGATAA 57.634 40.909 0.00 0.00 0.00 1.75
1407 1534 4.517285 GATGAGCAGACCAAACAAGGATA 58.483 43.478 0.00 0.00 0.00 2.59
1408 1535 2.957402 TGAGCAGACCAAACAAGGAT 57.043 45.000 0.00 0.00 0.00 3.24
1415 1542 2.254546 AACACGATGAGCAGACCAAA 57.745 45.000 0.00 0.00 0.00 3.28
1419 1546 1.656095 GCTGTAACACGATGAGCAGAC 59.344 52.381 0.00 0.00 0.00 3.51
1441 1568 5.519566 CACTAGCAAGCTCAATCTTACAGAG 59.480 44.000 0.00 0.00 0.00 3.35
1445 1572 4.759782 TCCACTAGCAAGCTCAATCTTAC 58.240 43.478 0.00 0.00 0.00 2.34
1448 1575 5.620738 TTATCCACTAGCAAGCTCAATCT 57.379 39.130 0.00 0.00 0.00 2.40
1455 1582 5.767168 AGGATTGATTTATCCACTAGCAAGC 59.233 40.000 5.53 0.00 45.45 4.01
1486 1613 2.623535 TCTTATGTACGGCGCATTTGT 58.376 42.857 10.83 4.22 0.00 2.83
1501 1628 4.708726 GCACCAGCAAGTTCAATCTTAT 57.291 40.909 0.00 0.00 41.58 1.73
1518 1645 4.660789 AAGCAGGATTGATTTATGCACC 57.339 40.909 0.00 0.00 39.34 5.01
1563 1690 2.276732 TTTCAGAACTTGGGAGCTGG 57.723 50.000 0.00 0.00 0.00 4.85
1623 2030 6.959361 TCAGTTTCAGAAATGAAAGCAGTAC 58.041 36.000 0.00 0.00 36.97 2.73
1625 2032 6.645790 ATCAGTTTCAGAAATGAAAGCAGT 57.354 33.333 0.00 0.00 42.39 4.40
1652 2059 2.889512 TGAGAACTTGGGAGCTGACTA 58.110 47.619 0.00 0.00 0.00 2.59
1725 2132 2.606587 CCCAGTAGCTGCCAAGGGT 61.607 63.158 14.08 0.00 0.00 4.34
1729 2136 0.833287 GATCTCCCAGTAGCTGCCAA 59.167 55.000 0.00 0.00 0.00 4.52
1774 2181 4.130118 GGCTATTATGCTACTGTTGTGCT 58.870 43.478 0.00 0.00 0.00 4.40
1799 2206 3.595173 GTTTTTGTGGTGCTCTTTTGGT 58.405 40.909 0.00 0.00 0.00 3.67
1860 2268 2.587322 GAATCATCGGCCGTGGTCCA 62.587 60.000 27.15 4.32 0.00 4.02
1959 2375 4.445385 GCTTATTTCTGCAACTGGTGTTTG 59.555 41.667 0.00 0.00 33.52 2.93
1961 2377 3.891366 AGCTTATTTCTGCAACTGGTGTT 59.109 39.130 0.00 0.00 36.75 3.32
1964 2380 3.305608 GCAAGCTTATTTCTGCAACTGGT 60.306 43.478 0.00 0.00 0.00 4.00
1968 2384 2.610433 GGGCAAGCTTATTTCTGCAAC 58.390 47.619 0.00 0.00 0.00 4.17
1995 2411 2.620112 GGTGTGCGCTCAATGCAGT 61.620 57.895 14.56 0.00 44.21 4.40
2100 2516 2.619013 ATGCAGCTTGCTTTCGTAAC 57.381 45.000 9.12 0.00 45.31 2.50
2122 2538 8.583296 TCACATTTTGTTGATTTGGACATATCA 58.417 29.630 2.01 2.01 0.00 2.15
2132 2548 4.952460 AGCTGCTCACATTTTGTTGATTT 58.048 34.783 0.00 0.00 0.00 2.17
2140 2556 2.887151 AGGGTAGCTGCTCACATTTT 57.113 45.000 4.91 0.00 0.00 1.82
2146 2562 2.202866 GCTGTAGGGTAGCTGCTCA 58.797 57.895 4.91 0.00 38.14 4.26
2296 2713 9.571810 GACAAGATAATAACATCATTTTGTGCA 57.428 29.630 0.00 0.00 0.00 4.57
2297 2714 8.736742 CGACAAGATAATAACATCATTTTGTGC 58.263 33.333 0.00 0.00 0.00 4.57
2300 2717 7.862372 CCCCGACAAGATAATAACATCATTTTG 59.138 37.037 0.00 0.00 0.00 2.44
2304 2721 6.433847 TCCCCGACAAGATAATAACATCAT 57.566 37.500 0.00 0.00 0.00 2.45
2305 2722 5.880164 TCCCCGACAAGATAATAACATCA 57.120 39.130 0.00 0.00 0.00 3.07
2306 2723 7.495934 CCATATCCCCGACAAGATAATAACATC 59.504 40.741 0.00 0.00 0.00 3.06
2307 2724 7.182026 TCCATATCCCCGACAAGATAATAACAT 59.818 37.037 0.00 0.00 0.00 2.71
2308 2725 6.499000 TCCATATCCCCGACAAGATAATAACA 59.501 38.462 0.00 0.00 0.00 2.41
2309 2726 6.942976 TCCATATCCCCGACAAGATAATAAC 58.057 40.000 0.00 0.00 0.00 1.89
2310 2727 6.351881 GCTCCATATCCCCGACAAGATAATAA 60.352 42.308 0.00 0.00 0.00 1.40
2311 2728 5.128827 GCTCCATATCCCCGACAAGATAATA 59.871 44.000 0.00 0.00 0.00 0.98
2312 2729 4.080863 GCTCCATATCCCCGACAAGATAAT 60.081 45.833 0.00 0.00 0.00 1.28
2313 2730 3.260884 GCTCCATATCCCCGACAAGATAA 59.739 47.826 0.00 0.00 0.00 1.75
2314 2731 2.832129 GCTCCATATCCCCGACAAGATA 59.168 50.000 0.00 0.00 0.00 1.98
2315 2732 1.625818 GCTCCATATCCCCGACAAGAT 59.374 52.381 0.00 0.00 0.00 2.40
2374 2791 0.679002 AGAGCCTGGCGACGTACTTA 60.679 55.000 13.96 0.00 0.00 2.24
2613 3042 0.034767 TGCAAAGGGCTCAGATCCTG 60.035 55.000 0.00 0.00 45.15 3.86
2721 3152 3.388841 GGAGAAGCCGGAGACCAA 58.611 61.111 5.05 0.00 0.00 3.67
2816 3247 4.101448 GCAGCCGACAGGACCCAT 62.101 66.667 0.00 0.00 41.02 4.00
2865 3296 2.032681 GCTCCCCACGACAAAGCT 59.967 61.111 0.00 0.00 0.00 3.74
2875 3307 3.390521 CTGTAGCCACGCTCCCCA 61.391 66.667 0.00 0.00 40.44 4.96
2925 3358 5.279809 GCCATTAACCAGATTAGACGGGATA 60.280 44.000 0.00 0.00 0.00 2.59
2935 3368 1.832883 TGTGCGCCATTAACCAGATT 58.167 45.000 4.18 0.00 0.00 2.40
2988 3421 2.285368 AATCGGCACAGAGGGGGA 60.285 61.111 0.00 0.00 0.00 4.81
3033 3474 1.079336 GGCCCTACTTGTCCGTGAC 60.079 63.158 0.00 0.00 0.00 3.67
3236 3678 0.719465 GCACCTCATTACAACGACGG 59.281 55.000 0.00 0.00 0.00 4.79
3339 3795 2.283821 GGCTGGTCCAAATGGCCA 60.284 61.111 8.56 8.56 42.08 5.36
3366 3822 2.851195 TCAAAGACAAAGGACTGCCTC 58.149 47.619 0.00 0.00 46.28 4.70
3430 3888 1.761822 GGTAGCCTTATCAGCCCCC 59.238 63.158 0.00 0.00 0.00 5.40
3440 3898 0.696501 AAATGACCACGGGTAGCCTT 59.303 50.000 9.73 0.00 35.25 4.35
3585 4043 3.615155 GAAGTTTCTCTCCAATGAGGGG 58.385 50.000 0.00 0.00 39.76 4.79
3671 4143 3.523972 GGGTCCCCTACTCAAGAAAAGAT 59.476 47.826 0.00 0.00 0.00 2.40
3737 4209 2.644798 GGGCAGGGAACAGTATATGGAT 59.355 50.000 0.00 0.00 0.00 3.41
3756 4228 5.116084 TGTTTGGGAGAATCTAATCAGGG 57.884 43.478 0.00 0.00 33.73 4.45
3876 4365 6.436843 CCAAATCTGGTAAGTGGTAACATC 57.563 41.667 0.00 0.00 43.66 3.06
3886 4375 3.305335 GGTGTTGTGCCAAATCTGGTAAG 60.305 47.826 0.00 0.00 45.53 2.34
3887 4376 2.625790 GGTGTTGTGCCAAATCTGGTAA 59.374 45.455 0.00 0.00 45.53 2.85
3888 4377 2.158534 AGGTGTTGTGCCAAATCTGGTA 60.159 45.455 0.00 0.00 45.53 3.25
3889 4378 1.039856 GGTGTTGTGCCAAATCTGGT 58.960 50.000 0.00 0.00 45.53 4.00
3890 4379 1.270550 GAGGTGTTGTGCCAAATCTGG 59.729 52.381 0.00 0.00 46.65 3.86
3891 4380 2.233271 AGAGGTGTTGTGCCAAATCTG 58.767 47.619 0.00 0.00 0.00 2.90
3892 4381 2.664402 AGAGGTGTTGTGCCAAATCT 57.336 45.000 0.00 0.00 0.00 2.40
3938 4427 1.791785 GCAGATATGCTCGAGCTTGTC 59.208 52.381 35.27 32.50 42.66 3.18
3994 4483 2.912295 CCAAATTCCCAATTTCCAGGGT 59.088 45.455 0.00 0.00 45.64 4.34
4187 4676 3.005578 AGTCCAGGAACACGAAGTCTAAC 59.994 47.826 0.00 0.00 41.61 2.34
4295 4784 1.383799 CCCCCAGGCAATGACAAGA 59.616 57.895 0.00 0.00 0.00 3.02
4343 4865 8.437742 CCTGCATTTACTGAATCATTTCAAAAC 58.562 33.333 0.00 0.00 41.22 2.43
4467 4989 9.139174 GTGTCAACATAAATTTTCGATCCAAAT 57.861 29.630 0.00 0.00 0.00 2.32
4630 5152 3.324846 TCATACAAGTGTTCAGCAGTCCT 59.675 43.478 0.00 0.00 0.00 3.85
4668 5190 8.372459 TCAGTAACAGCTTTAGAGAATTTGGTA 58.628 33.333 0.00 0.00 0.00 3.25
4669 5191 7.224297 TCAGTAACAGCTTTAGAGAATTTGGT 58.776 34.615 0.00 0.00 0.00 3.67
4675 5197 8.500753 TTGTTTTCAGTAACAGCTTTAGAGAA 57.499 30.769 0.00 0.00 39.06 2.87
4772 5294 8.410673 AGAAAGAATAGAAGTACTCTGTGACA 57.589 34.615 0.00 0.00 35.41 3.58
5420 5942 4.097741 ACAAATTGCAGTTCAAGTGTGCTA 59.902 37.500 0.00 0.00 38.22 3.49
5629 6151 6.698766 GGCTTGCTTTGTGATTAAATCCATAG 59.301 38.462 0.00 0.00 0.00 2.23
5677 6199 1.300963 GCCACATCTCCAGCTTCCA 59.699 57.895 0.00 0.00 0.00 3.53
5696 6218 2.359230 GCACACTGACAGGAGGGC 60.359 66.667 7.51 8.01 0.00 5.19
5714 6236 0.251354 GAGCCACATCTCCAGCTTCA 59.749 55.000 0.00 0.00 35.23 3.02
5740 6262 0.623723 TGGGGATGCTTTACCCTGAC 59.376 55.000 8.76 0.00 44.97 3.51
5745 6267 0.335019 AGGGTTGGGGATGCTTTACC 59.665 55.000 0.00 0.00 0.00 2.85
5754 6276 1.205460 GCTTCTGGTAGGGTTGGGGA 61.205 60.000 0.00 0.00 0.00 4.81
5858 6383 5.077564 TCCGTAGTGCTGATAGATATTGGT 58.922 41.667 0.00 0.00 0.00 3.67
5870 6395 3.131396 ACTTGAACTTTCCGTAGTGCTG 58.869 45.455 0.00 0.00 0.00 4.41
5891 6416 2.295629 TGCATTTTTGACCATGCGAAGA 59.704 40.909 0.00 0.00 42.48 2.87
5905 6430 7.275888 TGACAATCTGTTACTTCTGCATTTT 57.724 32.000 0.00 0.00 0.00 1.82
5975 6500 3.085533 TCTGTACAGCCTCTTCAGACTC 58.914 50.000 18.45 0.00 31.51 3.36
6071 6596 2.297597 GCTATAATCAGAGCCAGGTCGT 59.702 50.000 0.00 0.00 32.65 4.34
6181 6706 7.172532 TCACGGTCCATATTTGTCTATATTTGC 59.827 37.037 0.00 0.00 0.00 3.68
6230 6755 7.587757 GTCAAAGTAATTTAGCTGACAACACTG 59.412 37.037 0.00 0.00 34.64 3.66
6253 6778 7.340487 ACATATGCTCTCCAGATATATTCGTCA 59.660 37.037 1.58 0.00 0.00 4.35
6254 6779 7.647318 CACATATGCTCTCCAGATATATTCGTC 59.353 40.741 1.58 0.00 0.00 4.20
6311 6836 7.133891 ACAACAGCTTGATCTACAACATAAC 57.866 36.000 0.00 0.00 34.56 1.89
6312 6837 8.840833 TTACAACAGCTTGATCTACAACATAA 57.159 30.769 0.00 0.00 34.56 1.90
6313 6838 9.448438 AATTACAACAGCTTGATCTACAACATA 57.552 29.630 0.00 0.00 34.56 2.29
6314 6839 7.928307 ATTACAACAGCTTGATCTACAACAT 57.072 32.000 0.00 0.00 34.56 2.71
6315 6840 7.744087 AATTACAACAGCTTGATCTACAACA 57.256 32.000 0.00 0.00 34.56 3.33
6316 6841 8.289618 TGAAATTACAACAGCTTGATCTACAAC 58.710 33.333 0.00 0.00 34.56 3.32
6317 6842 8.289618 GTGAAATTACAACAGCTTGATCTACAA 58.710 33.333 0.00 0.00 36.97 2.41
6318 6843 7.443879 TGTGAAATTACAACAGCTTGATCTACA 59.556 33.333 0.00 0.00 0.00 2.74
6319 6844 7.806690 TGTGAAATTACAACAGCTTGATCTAC 58.193 34.615 0.00 0.00 0.00 2.59
6320 6845 7.977789 TGTGAAATTACAACAGCTTGATCTA 57.022 32.000 0.00 0.00 0.00 1.98
6321 6846 6.882610 TGTGAAATTACAACAGCTTGATCT 57.117 33.333 0.00 0.00 0.00 2.75
6322 6847 7.362662 TCTTGTGAAATTACAACAGCTTGATC 58.637 34.615 0.00 0.00 35.75 2.92
6323 6848 7.275888 TCTTGTGAAATTACAACAGCTTGAT 57.724 32.000 0.00 0.00 35.75 2.57
6324 6849 6.691754 TCTTGTGAAATTACAACAGCTTGA 57.308 33.333 0.00 0.00 35.75 3.02
6325 6850 7.935338 AATCTTGTGAAATTACAACAGCTTG 57.065 32.000 0.00 0.00 35.75 4.01
6326 6851 8.850156 AGTAATCTTGTGAAATTACAACAGCTT 58.150 29.630 7.70 0.00 39.65 3.74
6327 6852 8.396272 AGTAATCTTGTGAAATTACAACAGCT 57.604 30.769 7.70 0.00 39.65 4.24
6328 6853 8.289618 TGAGTAATCTTGTGAAATTACAACAGC 58.710 33.333 7.70 0.00 39.65 4.40
6374 6899 9.658799 CCAGATATATTCGTCAAATGGTAGAAT 57.341 33.333 0.00 0.00 35.88 2.40
6375 6900 8.866093 TCCAGATATATTCGTCAAATGGTAGAA 58.134 33.333 0.00 0.00 0.00 2.10
6376 6901 8.417273 TCCAGATATATTCGTCAAATGGTAGA 57.583 34.615 0.00 0.00 0.00 2.59
6377 6902 8.523658 TCTCCAGATATATTCGTCAAATGGTAG 58.476 37.037 0.00 0.00 0.00 3.18
6378 6903 8.417273 TCTCCAGATATATTCGTCAAATGGTA 57.583 34.615 0.00 0.00 0.00 3.25
6379 6904 7.303182 TCTCCAGATATATTCGTCAAATGGT 57.697 36.000 0.00 0.00 0.00 3.55
6380 6905 6.312426 GCTCTCCAGATATATTCGTCAAATGG 59.688 42.308 0.00 0.00 0.00 3.16
6381 6906 6.870439 TGCTCTCCAGATATATTCGTCAAATG 59.130 38.462 0.00 0.00 0.00 2.32
6382 6907 6.997655 TGCTCTCCAGATATATTCGTCAAAT 58.002 36.000 0.00 0.00 0.00 2.32
6383 6908 6.405278 TGCTCTCCAGATATATTCGTCAAA 57.595 37.500 0.00 0.00 0.00 2.69
6384 6909 6.596309 ATGCTCTCCAGATATATTCGTCAA 57.404 37.500 0.00 0.00 0.00 3.18
6385 6910 7.340487 ACATATGCTCTCCAGATATATTCGTCA 59.660 37.037 1.58 0.00 0.00 4.35
6386 6911 7.647318 CACATATGCTCTCCAGATATATTCGTC 59.353 40.741 1.58 0.00 0.00 4.20
6387 6912 7.123397 ACACATATGCTCTCCAGATATATTCGT 59.877 37.037 1.58 0.00 0.00 3.85
6388 6913 7.434602 CACACATATGCTCTCCAGATATATTCG 59.565 40.741 1.58 0.00 0.00 3.34
6389 6914 8.256605 ACACACATATGCTCTCCAGATATATTC 58.743 37.037 1.58 0.00 0.00 1.75
6390 6915 8.143673 ACACACATATGCTCTCCAGATATATT 57.856 34.615 1.58 0.00 0.00 1.28
6391 6916 7.730672 ACACACATATGCTCTCCAGATATAT 57.269 36.000 1.58 0.00 0.00 0.86
6392 6917 8.689972 CATACACACATATGCTCTCCAGATATA 58.310 37.037 1.58 0.00 0.00 0.86
6393 6918 7.179872 ACATACACACATATGCTCTCCAGATAT 59.820 37.037 1.58 0.00 36.21 1.63
6394 6919 6.494835 ACATACACACATATGCTCTCCAGATA 59.505 38.462 1.58 0.00 36.21 1.98
6395 6920 5.306419 ACATACACACATATGCTCTCCAGAT 59.694 40.000 1.58 0.00 36.21 2.90
6396 6921 4.651045 ACATACACACATATGCTCTCCAGA 59.349 41.667 1.58 0.00 36.21 3.86
6397 6922 4.953667 ACATACACACATATGCTCTCCAG 58.046 43.478 1.58 0.00 36.21 3.86
6398 6923 6.670695 ATACATACACACATATGCTCTCCA 57.329 37.500 1.58 0.00 36.21 3.86
6399 6924 7.657354 TCAAATACATACACACATATGCTCTCC 59.343 37.037 1.58 0.00 36.21 3.71
6400 6925 8.593492 TCAAATACATACACACATATGCTCTC 57.407 34.615 1.58 0.00 36.21 3.20
6435 6960 9.190858 GCTTGATGTACAACATAACATTTCAAA 57.809 29.630 6.66 0.00 39.27 2.69
6436 6961 8.575589 AGCTTGATGTACAACATAACATTTCAA 58.424 29.630 6.66 4.14 39.27 2.69
6437 6962 8.022550 CAGCTTGATGTACAACATAACATTTCA 58.977 33.333 6.66 0.00 39.27 2.69
6438 6963 8.023128 ACAGCTTGATGTACAACATAACATTTC 58.977 33.333 6.66 0.00 39.27 2.17
6439 6964 7.885297 ACAGCTTGATGTACAACATAACATTT 58.115 30.769 6.66 0.00 39.27 2.32
6440 6965 7.452880 ACAGCTTGATGTACAACATAACATT 57.547 32.000 6.66 0.00 39.27 2.71
6441 6966 7.040478 ACAACAGCTTGATGTACAACATAACAT 60.040 33.333 6.66 0.00 39.27 2.71
6442 6967 6.262049 ACAACAGCTTGATGTACAACATAACA 59.738 34.615 6.66 0.00 39.27 2.41
6538 7066 2.464157 AGAGTAGTTGCCAGCAGTTC 57.536 50.000 0.00 0.00 0.00 3.01
6570 7098 3.072768 TGCAAAAGCCCATCCAGATTTTT 59.927 39.130 0.00 0.00 0.00 1.94
6584 7112 8.243289 ACAATCATGTAAATACTTGCAAAAGC 57.757 30.769 0.00 0.00 38.24 3.51
6625 7153 4.641645 CCCACGCTTGGCCACAGA 62.642 66.667 3.88 0.00 42.35 3.41
6636 7164 0.602905 GGACATATAGGTGCCCACGC 60.603 60.000 0.00 0.00 0.00 5.34
6637 7165 1.048601 AGGACATATAGGTGCCCACG 58.951 55.000 5.36 0.00 0.00 4.94
6638 7166 6.267928 CCTATATAGGACATATAGGTGCCCAC 59.732 46.154 22.53 0.00 46.63 4.61
6639 7167 6.382087 CCTATATAGGACATATAGGTGCCCA 58.618 44.000 22.53 0.00 46.63 5.36
6640 7168 6.919775 CCTATATAGGACATATAGGTGCCC 57.080 45.833 22.53 0.00 46.63 5.36
6651 7179 9.901651 TCCCAGTTAATTTACCTATATAGGACA 57.098 33.333 31.53 17.37 46.63 4.02
6653 7181 9.901651 TGTCCCAGTTAATTTACCTATATAGGA 57.098 33.333 31.53 12.83 46.63 2.94
6655 7183 9.939802 GGTGTCCCAGTTAATTTACCTATATAG 57.060 37.037 2.46 2.46 0.00 1.31
6656 7184 9.678981 AGGTGTCCCAGTTAATTTACCTATATA 57.321 33.333 0.00 0.00 35.66 0.86
6657 7185 8.577164 AGGTGTCCCAGTTAATTTACCTATAT 57.423 34.615 0.00 0.00 35.66 0.86
6658 7186 9.151177 CTAGGTGTCCCAGTTAATTTACCTATA 57.849 37.037 0.00 0.00 38.46 1.31
6659 7187 6.903340 AGGTGTCCCAGTTAATTTACCTAT 57.097 37.500 0.00 0.00 35.66 2.57
6660 7188 6.384886 CCTAGGTGTCCCAGTTAATTTACCTA 59.615 42.308 0.00 0.00 38.23 3.08
6661 7189 5.191124 CCTAGGTGTCCCAGTTAATTTACCT 59.809 44.000 0.00 0.00 40.21 3.08
6662 7190 5.045359 ACCTAGGTGTCCCAGTTAATTTACC 60.045 44.000 15.42 0.00 0.00 2.85
6663 7191 5.878669 CACCTAGGTGTCCCAGTTAATTTAC 59.121 44.000 30.57 0.00 40.91 2.01
6664 7192 5.572066 GCACCTAGGTGTCCCAGTTAATTTA 60.572 44.000 36.31 0.00 46.90 1.40
6665 7193 4.809691 GCACCTAGGTGTCCCAGTTAATTT 60.810 45.833 36.31 0.00 46.90 1.82
6666 7194 3.308188 GCACCTAGGTGTCCCAGTTAATT 60.308 47.826 36.31 0.00 46.90 1.40
6667 7195 2.238898 GCACCTAGGTGTCCCAGTTAAT 59.761 50.000 36.31 0.00 46.90 1.40
6668 7196 1.626825 GCACCTAGGTGTCCCAGTTAA 59.373 52.381 36.31 0.00 46.90 2.01
6669 7197 1.272807 GCACCTAGGTGTCCCAGTTA 58.727 55.000 36.31 0.00 46.90 2.24
6670 7198 1.489560 GGCACCTAGGTGTCCCAGTT 61.490 60.000 36.31 0.00 44.18 3.16
6671 7199 1.918800 GGCACCTAGGTGTCCCAGT 60.919 63.158 36.31 0.74 44.18 4.00
6672 7200 2.990479 GGCACCTAGGTGTCCCAG 59.010 66.667 36.31 15.94 44.18 4.45
6687 7215 1.322538 AACAATCAAGATGCCCGGGC 61.323 55.000 39.40 39.40 42.35 6.13
6688 7216 1.185315 AAACAATCAAGATGCCCGGG 58.815 50.000 19.09 19.09 0.00 5.73
6689 7217 3.181487 CCTAAAACAATCAAGATGCCCGG 60.181 47.826 0.00 0.00 0.00 5.73
6690 7218 3.443681 ACCTAAAACAATCAAGATGCCCG 59.556 43.478 0.00 0.00 0.00 6.13
6691 7219 6.096846 ACATACCTAAAACAATCAAGATGCCC 59.903 38.462 0.00 0.00 0.00 5.36
6692 7220 7.100458 ACATACCTAAAACAATCAAGATGCC 57.900 36.000 0.00 0.00 0.00 4.40
6693 7221 8.673711 TGTACATACCTAAAACAATCAAGATGC 58.326 33.333 0.00 0.00 0.00 3.91
6695 7223 8.893727 GCTGTACATACCTAAAACAATCAAGAT 58.106 33.333 0.00 0.00 0.00 2.40
6696 7224 7.335924 GGCTGTACATACCTAAAACAATCAAGA 59.664 37.037 0.00 0.00 0.00 3.02
6697 7225 7.472543 GGCTGTACATACCTAAAACAATCAAG 58.527 38.462 0.00 0.00 0.00 3.02
6698 7226 6.092944 CGGCTGTACATACCTAAAACAATCAA 59.907 38.462 11.99 0.00 0.00 2.57
6699 7227 5.583061 CGGCTGTACATACCTAAAACAATCA 59.417 40.000 11.99 0.00 0.00 2.57
6700 7228 5.503520 GCGGCTGTACATACCTAAAACAATC 60.504 44.000 11.99 0.00 0.00 2.67
6701 7229 4.334481 GCGGCTGTACATACCTAAAACAAT 59.666 41.667 11.99 0.00 0.00 2.71
6702 7230 3.685756 GCGGCTGTACATACCTAAAACAA 59.314 43.478 11.99 0.00 0.00 2.83
6703 7231 3.264104 GCGGCTGTACATACCTAAAACA 58.736 45.455 11.99 0.00 0.00 2.83
6704 7232 3.063045 GTGCGGCTGTACATACCTAAAAC 59.937 47.826 9.10 3.34 0.00 2.43
6705 7233 3.264104 GTGCGGCTGTACATACCTAAAA 58.736 45.455 9.10 0.00 0.00 1.52
6706 7234 2.234168 TGTGCGGCTGTACATACCTAAA 59.766 45.455 12.89 0.00 35.67 1.85
6707 7235 1.826096 TGTGCGGCTGTACATACCTAA 59.174 47.619 12.89 0.00 35.67 2.69
6708 7236 1.476477 TGTGCGGCTGTACATACCTA 58.524 50.000 12.89 0.00 35.67 3.08
6709 7237 0.611200 TTGTGCGGCTGTACATACCT 59.389 50.000 17.61 0.00 40.52 3.08
6710 7238 1.330521 CATTGTGCGGCTGTACATACC 59.669 52.381 17.61 0.00 40.52 2.73
6711 7239 2.276201 TCATTGTGCGGCTGTACATAC 58.724 47.619 17.61 0.00 40.52 2.39
6712 7240 2.682155 TCATTGTGCGGCTGTACATA 57.318 45.000 17.61 8.90 40.52 2.29
6713 7241 1.819928 TTCATTGTGCGGCTGTACAT 58.180 45.000 17.61 5.20 40.52 2.29
6714 7242 1.468127 CATTCATTGTGCGGCTGTACA 59.532 47.619 12.89 12.89 39.05 2.90
6715 7243 1.468520 ACATTCATTGTGCGGCTGTAC 59.531 47.619 6.84 6.84 37.11 2.90
6716 7244 1.819928 ACATTCATTGTGCGGCTGTA 58.180 45.000 0.00 0.00 37.11 2.74
6717 7245 0.961019 AACATTCATTGTGCGGCTGT 59.039 45.000 0.00 0.00 38.99 4.40
6718 7246 1.722464 CAAACATTCATTGTGCGGCTG 59.278 47.619 0.00 0.00 38.99 4.85
6719 7247 1.612950 TCAAACATTCATTGTGCGGCT 59.387 42.857 0.00 0.00 38.99 5.52
6720 7248 2.063156 TCAAACATTCATTGTGCGGC 57.937 45.000 0.00 0.00 38.99 6.53
6721 7249 4.448395 ACAAATCAAACATTCATTGTGCGG 59.552 37.500 0.00 0.00 38.99 5.69
6722 7250 5.579384 ACAAATCAAACATTCATTGTGCG 57.421 34.783 0.00 0.00 38.99 5.34
6723 7251 6.852345 GGAAACAAATCAAACATTCATTGTGC 59.148 34.615 0.00 0.00 38.99 4.57
6724 7252 8.145316 AGGAAACAAATCAAACATTCATTGTG 57.855 30.769 0.00 0.00 38.99 3.33
6725 7253 9.829507 TTAGGAAACAAATCAAACATTCATTGT 57.170 25.926 0.00 0.00 41.53 2.71
6741 7269 9.859427 CTTGCATGAAGAATAATTAGGAAACAA 57.141 29.630 0.00 0.00 32.82 2.83
6742 7270 9.241919 TCTTGCATGAAGAATAATTAGGAAACA 57.758 29.630 0.00 0.00 37.78 2.83
6743 7271 9.508567 GTCTTGCATGAAGAATAATTAGGAAAC 57.491 33.333 3.51 0.00 42.56 2.78
6744 7272 9.466497 AGTCTTGCATGAAGAATAATTAGGAAA 57.534 29.630 3.51 0.00 42.56 3.13
6745 7273 9.466497 AAGTCTTGCATGAAGAATAATTAGGAA 57.534 29.630 3.51 0.00 42.56 3.36
6746 7274 9.466497 AAAGTCTTGCATGAAGAATAATTAGGA 57.534 29.630 3.51 0.00 42.56 2.94
6747 7275 9.727627 GAAAGTCTTGCATGAAGAATAATTAGG 57.272 33.333 3.51 0.00 42.56 2.69
6748 7276 9.727627 GGAAAGTCTTGCATGAAGAATAATTAG 57.272 33.333 3.51 0.00 42.56 1.73
6749 7277 8.397906 CGGAAAGTCTTGCATGAAGAATAATTA 58.602 33.333 3.51 0.00 42.56 1.40
6750 7278 7.094205 ACGGAAAGTCTTGCATGAAGAATAATT 60.094 33.333 3.51 0.00 42.56 1.40
6751 7279 6.375455 ACGGAAAGTCTTGCATGAAGAATAAT 59.625 34.615 3.51 0.00 42.56 1.28
6752 7280 5.705441 ACGGAAAGTCTTGCATGAAGAATAA 59.295 36.000 3.51 0.00 42.56 1.40
6753 7281 5.122239 CACGGAAAGTCTTGCATGAAGAATA 59.878 40.000 3.51 0.00 42.56 1.75
6754 7282 4.074970 ACGGAAAGTCTTGCATGAAGAAT 58.925 39.130 3.51 0.00 42.56 2.40
6755 7283 3.250762 CACGGAAAGTCTTGCATGAAGAA 59.749 43.478 3.51 0.00 42.56 2.52
6756 7284 2.807967 CACGGAAAGTCTTGCATGAAGA 59.192 45.455 3.51 0.00 38.45 2.87
6757 7285 2.549754 ACACGGAAAGTCTTGCATGAAG 59.450 45.455 3.51 0.00 0.00 3.02
6758 7286 2.571212 ACACGGAAAGTCTTGCATGAA 58.429 42.857 3.51 0.00 0.00 2.57
6759 7287 2.254546 ACACGGAAAGTCTTGCATGA 57.745 45.000 0.00 0.00 0.00 3.07
6760 7288 3.354089 AAACACGGAAAGTCTTGCATG 57.646 42.857 0.00 0.00 0.00 4.06
6761 7289 3.880490 TGTAAACACGGAAAGTCTTGCAT 59.120 39.130 0.00 0.00 0.00 3.96
6762 7290 3.271729 TGTAAACACGGAAAGTCTTGCA 58.728 40.909 0.00 0.00 0.00 4.08
6763 7291 3.955771 TGTAAACACGGAAAGTCTTGC 57.044 42.857 0.00 0.00 0.00 4.01
6764 7292 9.458374 AATAAAATGTAAACACGGAAAGTCTTG 57.542 29.630 0.00 0.00 0.00 3.02
6768 7296 9.804758 TGAAAATAAAATGTAAACACGGAAAGT 57.195 25.926 0.00 0.00 0.00 2.66
6789 7317 9.935241 TGCATGCCTAATAGTTAAAAATGAAAA 57.065 25.926 16.68 0.00 0.00 2.29
6790 7318 9.935241 TTGCATGCCTAATAGTTAAAAATGAAA 57.065 25.926 16.68 0.00 0.00 2.69
6791 7319 9.585099 CTTGCATGCCTAATAGTTAAAAATGAA 57.415 29.630 16.68 0.00 0.00 2.57
6792 7320 8.965819 TCTTGCATGCCTAATAGTTAAAAATGA 58.034 29.630 16.68 0.00 0.00 2.57
6793 7321 9.023967 GTCTTGCATGCCTAATAGTTAAAAATG 57.976 33.333 16.68 0.00 0.00 2.32
6794 7322 8.971073 AGTCTTGCATGCCTAATAGTTAAAAAT 58.029 29.630 16.68 0.00 0.00 1.82
6795 7323 8.348285 AGTCTTGCATGCCTAATAGTTAAAAA 57.652 30.769 16.68 0.00 0.00 1.94
6796 7324 7.938140 AGTCTTGCATGCCTAATAGTTAAAA 57.062 32.000 16.68 0.00 0.00 1.52
6797 7325 7.938140 AAGTCTTGCATGCCTAATAGTTAAA 57.062 32.000 16.68 0.00 0.00 1.52
6798 7326 7.829211 AGAAAGTCTTGCATGCCTAATAGTTAA 59.171 33.333 16.68 0.00 0.00 2.01
6799 7327 7.280876 CAGAAAGTCTTGCATGCCTAATAGTTA 59.719 37.037 16.68 0.00 0.00 2.24
6800 7328 6.094603 CAGAAAGTCTTGCATGCCTAATAGTT 59.905 38.462 16.68 3.01 0.00 2.24
6801 7329 5.587844 CAGAAAGTCTTGCATGCCTAATAGT 59.412 40.000 16.68 0.00 0.00 2.12
6802 7330 5.587844 ACAGAAAGTCTTGCATGCCTAATAG 59.412 40.000 16.68 4.97 0.00 1.73
6803 7331 5.355071 CACAGAAAGTCTTGCATGCCTAATA 59.645 40.000 16.68 0.00 0.00 0.98
6804 7332 4.157289 CACAGAAAGTCTTGCATGCCTAAT 59.843 41.667 16.68 0.00 0.00 1.73
6805 7333 3.503363 CACAGAAAGTCTTGCATGCCTAA 59.497 43.478 16.68 2.34 0.00 2.69
6806 7334 3.076621 CACAGAAAGTCTTGCATGCCTA 58.923 45.455 16.68 1.93 0.00 3.93
6807 7335 1.884579 CACAGAAAGTCTTGCATGCCT 59.115 47.619 16.68 1.12 0.00 4.75
6808 7336 1.610522 ACACAGAAAGTCTTGCATGCC 59.389 47.619 16.68 0.00 0.00 4.40
6809 7337 3.360249 AACACAGAAAGTCTTGCATGC 57.640 42.857 11.82 11.82 0.00 4.06
6810 7338 5.820131 TGTAAACACAGAAAGTCTTGCATG 58.180 37.500 0.00 0.00 0.00 4.06
6811 7339 6.639632 ATGTAAACACAGAAAGTCTTGCAT 57.360 33.333 0.00 0.00 0.00 3.96
6812 7340 6.449635 AATGTAAACACAGAAAGTCTTGCA 57.550 33.333 0.00 0.00 0.00 4.08
6813 7341 7.755582 AAAATGTAAACACAGAAAGTCTTGC 57.244 32.000 0.00 0.00 0.00 4.01
6839 7367 9.935241 TGCATGCCTAATAGTTAAAAATGAAAA 57.065 25.926 16.68 0.00 0.00 2.29
6840 7368 9.935241 TTGCATGCCTAATAGTTAAAAATGAAA 57.065 25.926 16.68 0.00 0.00 2.69
6841 7369 9.585099 CTTGCATGCCTAATAGTTAAAAATGAA 57.415 29.630 16.68 0.00 0.00 2.57
6842 7370 8.965819 TCTTGCATGCCTAATAGTTAAAAATGA 58.034 29.630 16.68 0.00 0.00 2.57
6843 7371 9.023967 GTCTTGCATGCCTAATAGTTAAAAATG 57.976 33.333 16.68 0.00 0.00 2.32
6844 7372 8.971073 AGTCTTGCATGCCTAATAGTTAAAAAT 58.029 29.630 16.68 0.00 0.00 1.82
6845 7373 8.348285 AGTCTTGCATGCCTAATAGTTAAAAA 57.652 30.769 16.68 0.00 0.00 1.94
6846 7374 7.938140 AGTCTTGCATGCCTAATAGTTAAAA 57.062 32.000 16.68 0.00 0.00 1.52
6847 7375 7.761409 CAAGTCTTGCATGCCTAATAGTTAAA 58.239 34.615 16.68 0.00 0.00 1.52
6848 7376 7.320443 CAAGTCTTGCATGCCTAATAGTTAA 57.680 36.000 16.68 0.00 0.00 2.01
6849 7377 6.925610 CAAGTCTTGCATGCCTAATAGTTA 57.074 37.500 16.68 0.00 0.00 2.24
6850 7378 5.824904 CAAGTCTTGCATGCCTAATAGTT 57.175 39.130 16.68 3.01 0.00 2.24
6864 7392 8.984891 TTTGATTTATTGTATGGCAAGTCTTG 57.015 30.769 8.31 8.31 40.86 3.02
6865 7393 8.806146 ACTTTGATTTATTGTATGGCAAGTCTT 58.194 29.630 0.00 0.00 40.86 3.01
6866 7394 8.353423 ACTTTGATTTATTGTATGGCAAGTCT 57.647 30.769 0.00 0.00 40.86 3.24
6922 7450 9.361712 GGAAACAAAAATACGCGTATTAGATAC 57.638 33.333 36.82 24.58 34.90 2.24
6923 7451 9.316730 AGGAAACAAAAATACGCGTATTAGATA 57.683 29.630 36.82 11.56 34.90 1.98
6924 7452 8.205131 AGGAAACAAAAATACGCGTATTAGAT 57.795 30.769 36.82 25.25 34.90 1.98
6925 7453 7.599630 AGGAAACAAAAATACGCGTATTAGA 57.400 32.000 36.82 13.13 34.90 2.10
6926 7454 9.202545 GTTAGGAAACAAAAATACGCGTATTAG 57.797 33.333 36.82 30.05 33.97 1.73
6927 7455 8.934825 AGTTAGGAAACAAAAATACGCGTATTA 58.065 29.630 36.82 19.22 38.12 0.98
6928 7456 7.809665 AGTTAGGAAACAAAAATACGCGTATT 58.190 30.769 33.00 33.00 38.12 1.89
6929 7457 7.368480 AGTTAGGAAACAAAAATACGCGTAT 57.632 32.000 25.54 25.54 38.12 3.06
6930 7458 6.783892 AGTTAGGAAACAAAAATACGCGTA 57.216 33.333 22.94 22.94 38.12 4.42
6931 7459 5.678132 AGTTAGGAAACAAAAATACGCGT 57.322 34.783 19.17 19.17 38.12 6.01
6932 7460 7.681903 AGATAGTTAGGAAACAAAAATACGCG 58.318 34.615 3.53 3.53 38.12 6.01
6939 7467 9.603921 CCCGTATTAGATAGTTAGGAAACAAAA 57.396 33.333 0.00 0.00 38.12 2.44
6940 7468 8.761689 ACCCGTATTAGATAGTTAGGAAACAAA 58.238 33.333 0.00 0.00 38.12 2.83
6941 7469 8.310122 ACCCGTATTAGATAGTTAGGAAACAA 57.690 34.615 0.00 0.00 38.12 2.83
6942 7470 7.902920 ACCCGTATTAGATAGTTAGGAAACA 57.097 36.000 0.00 0.00 38.12 2.83
6978 7506 8.564574 CCCGTGTATGCACATAATTTTATTACT 58.435 33.333 14.55 0.00 45.50 2.24
6979 7507 8.347035 ACCCGTGTATGCACATAATTTTATTAC 58.653 33.333 14.55 0.00 45.50 1.89
6980 7508 8.453238 ACCCGTGTATGCACATAATTTTATTA 57.547 30.769 14.55 0.00 45.50 0.98
6981 7509 7.341445 ACCCGTGTATGCACATAATTTTATT 57.659 32.000 14.55 0.00 45.50 1.40
6982 7510 6.952773 ACCCGTGTATGCACATAATTTTAT 57.047 33.333 14.55 0.00 45.50 1.40
6983 7511 9.727859 ATATACCCGTGTATGCACATAATTTTA 57.272 29.630 14.55 0.00 45.50 1.52
6984 7512 6.952773 ATACCCGTGTATGCACATAATTTT 57.047 33.333 14.55 0.00 45.50 1.82
6985 7513 9.899661 ATATATACCCGTGTATGCACATAATTT 57.100 29.630 14.55 0.60 45.50 1.82
6987 7515 9.976511 GTATATATACCCGTGTATGCACATAAT 57.023 33.333 14.55 4.40 45.50 1.28
6988 7516 8.415553 GGTATATATACCCGTGTATGCACATAA 58.584 37.037 25.85 0.00 45.62 1.90
6989 7517 7.944061 GGTATATATACCCGTGTATGCACATA 58.056 38.462 25.85 4.66 45.62 2.29
6990 7518 6.812998 GGTATATATACCCGTGTATGCACAT 58.187 40.000 25.85 2.51 45.62 3.21
6991 7519 6.211587 GGTATATATACCCGTGTATGCACA 57.788 41.667 25.85 0.00 45.62 4.57
7009 7537 9.381038 AGCTCAGAGAATAATTTACTGGGTATA 57.619 33.333 0.00 0.00 32.45 1.47
7010 7538 8.268878 AGCTCAGAGAATAATTTACTGGGTAT 57.731 34.615 0.00 0.00 32.45 2.73
7011 7539 7.676683 AGCTCAGAGAATAATTTACTGGGTA 57.323 36.000 0.00 0.00 32.45 3.69
7012 7540 6.567602 AGCTCAGAGAATAATTTACTGGGT 57.432 37.500 0.00 0.00 32.45 4.51
7025 7553 9.871238 AAAAATAGAACGTAATAGCTCAGAGAA 57.129 29.630 0.00 0.00 0.00 2.87
7082 7610 9.715121 ACCCGATATGTACATAATTTCGTTAAT 57.285 29.630 24.80 11.97 0.00 1.40
7084 7612 9.624697 GTACCCGATATGTACATAATTTCGTTA 57.375 33.333 24.80 17.00 38.71 3.18
7085 7613 7.326789 CGTACCCGATATGTACATAATTTCGTT 59.673 37.037 24.80 17.68 38.77 3.85
7086 7614 6.803320 CGTACCCGATATGTACATAATTTCGT 59.197 38.462 24.80 17.29 38.77 3.85
7087 7615 6.803320 ACGTACCCGATATGTACATAATTTCG 59.197 38.462 22.06 22.06 38.77 3.46
7088 7616 9.793252 ATACGTACCCGATATGTACATAATTTC 57.207 33.333 19.11 11.45 37.95 2.17
7093 7621 9.489084 GGTATATACGTACCCGATATGTACATA 57.511 37.037 17.65 17.65 37.95 2.29
7094 7622 8.383318 GGTATATACGTACCCGATATGTACAT 57.617 38.462 13.93 13.93 37.95 2.29
7095 7623 7.786178 GGTATATACGTACCCGATATGTACA 57.214 40.000 6.79 0.00 37.95 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.