Multiple sequence alignment - TraesCS3D01G403100
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3D01G403100
chr3D
100.000
3948
0
0
1
3948
517274032
517277979
0.000000e+00
7291.0
1
TraesCS3D01G403100
chr3A
92.892
3320
159
36
6
3279
653240868
653244156
0.000000e+00
4752.0
2
TraesCS3D01G403100
chr3B
93.835
2417
106
21
1
2386
681097283
681099687
0.000000e+00
3598.0
3
TraesCS3D01G403100
chr3B
95.866
895
30
3
2385
3279
681099771
681100658
0.000000e+00
1441.0
4
TraesCS3D01G403100
chr7D
97.050
678
18
2
3273
3948
632399301
632398624
0.000000e+00
1140.0
5
TraesCS3D01G403100
chr7D
96.884
674
19
2
3277
3948
210080278
210079605
0.000000e+00
1127.0
6
TraesCS3D01G403100
chr4D
96.755
678
20
2
3273
3948
29189367
29190044
0.000000e+00
1129.0
7
TraesCS3D01G403100
chr6D
96.465
679
19
5
3273
3948
13209762
13210438
0.000000e+00
1116.0
8
TraesCS3D01G403100
chr1A
95.509
668
25
3
3284
3948
1312754
1312089
0.000000e+00
1062.0
9
TraesCS3D01G403100
chr7A
94.153
667
34
3
3284
3948
490820471
490821134
0.000000e+00
1011.0
10
TraesCS3D01G403100
chr2B
93.577
685
33
7
3273
3948
473334102
473333420
0.000000e+00
1011.0
11
TraesCS3D01G403100
chr2D
93.825
664
37
4
3287
3948
98665472
98664811
0.000000e+00
996.0
12
TraesCS3D01G403100
chr5D
93.874
653
38
2
3298
3948
495523164
495523816
0.000000e+00
983.0
13
TraesCS3D01G403100
chr2A
97.917
48
1
0
3271
3318
34312913
34312960
2.530000e-12
84.2
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3D01G403100
chr3D
517274032
517277979
3947
False
7291.0
7291
100.0000
1
3948
1
chr3D.!!$F1
3947
1
TraesCS3D01G403100
chr3A
653240868
653244156
3288
False
4752.0
4752
92.8920
6
3279
1
chr3A.!!$F1
3273
2
TraesCS3D01G403100
chr3B
681097283
681100658
3375
False
2519.5
3598
94.8505
1
3279
2
chr3B.!!$F1
3278
3
TraesCS3D01G403100
chr7D
632398624
632399301
677
True
1140.0
1140
97.0500
3273
3948
1
chr7D.!!$R2
675
4
TraesCS3D01G403100
chr7D
210079605
210080278
673
True
1127.0
1127
96.8840
3277
3948
1
chr7D.!!$R1
671
5
TraesCS3D01G403100
chr4D
29189367
29190044
677
False
1129.0
1129
96.7550
3273
3948
1
chr4D.!!$F1
675
6
TraesCS3D01G403100
chr6D
13209762
13210438
676
False
1116.0
1116
96.4650
3273
3948
1
chr6D.!!$F1
675
7
TraesCS3D01G403100
chr1A
1312089
1312754
665
True
1062.0
1062
95.5090
3284
3948
1
chr1A.!!$R1
664
8
TraesCS3D01G403100
chr7A
490820471
490821134
663
False
1011.0
1011
94.1530
3284
3948
1
chr7A.!!$F1
664
9
TraesCS3D01G403100
chr2B
473333420
473334102
682
True
1011.0
1011
93.5770
3273
3948
1
chr2B.!!$R1
675
10
TraesCS3D01G403100
chr2D
98664811
98665472
661
True
996.0
996
93.8250
3287
3948
1
chr2D.!!$R1
661
11
TraesCS3D01G403100
chr5D
495523164
495523816
652
False
983.0
983
93.8740
3298
3948
1
chr5D.!!$F1
650
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
436
452
0.250510
TGTGGTGCAAATGAGCCGTA
60.251
50.000
0.00
0.0
0.0
4.02
F
1233
1278
0.176680
ATCAGCAGGCCTCACTAACG
59.823
55.000
0.00
0.0
0.0
3.18
F
1242
1287
1.153549
CTCACTAACGCCCTGCTCC
60.154
63.158
0.00
0.0
0.0
4.70
F
2651
2780
0.458669
TCGCGTGGAGAGGTAATTCC
59.541
55.000
5.77
0.0
0.0
3.01
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1242
1287
1.128692
GGTGAGTCTTTTTCCGCATCG
59.871
52.381
0.0
0.0
0.0
3.84
R
2443
2572
0.111639
TTTTTAGGGGCTCGGCAGTT
59.888
50.000
0.0
0.0
0.0
3.16
R
2742
2877
1.000955
CAGCAACTTCGTACCTGGAGT
59.999
52.381
0.0
0.0
0.0
3.85
R
3522
3662
4.689345
GCGTCATACATACCCATTCCTAAC
59.311
45.833
0.0
0.0
0.0
2.34
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
57
58
4.032900
CGGAGTTCTTGATTGGTATGTTCG
59.967
45.833
0.00
0.00
0.00
3.95
148
149
4.299796
TGCTTGGGCCTTGGGGTC
62.300
66.667
4.53
0.00
37.74
4.46
161
162
2.520260
GGGTCCCATGCTGCCATC
60.520
66.667
1.78
0.00
0.00
3.51
176
177
1.134699
GCCATCGTGATGTTCAGAGGA
60.135
52.381
8.89
0.00
37.11
3.71
180
181
4.498241
CATCGTGATGTTCAGAGGAGAAA
58.502
43.478
1.62
0.00
34.23
2.52
182
183
2.670414
CGTGATGTTCAGAGGAGAAAGC
59.330
50.000
0.00
0.00
0.00
3.51
213
224
8.407832
CCTTGTTTGATGCATAGTTCATGATTA
58.592
33.333
0.00
0.00
36.69
1.75
253
264
3.190079
TGTCATGCGCTCTGATAAGAAC
58.810
45.455
9.73
0.26
0.00
3.01
365
381
9.635520
CAAGATTTGTGCAGATTTATCTTCTTT
57.364
29.630
11.17
0.00
34.22
2.52
433
449
3.984838
TTTGTGGTGCAAATGAGCC
57.015
47.368
0.00
0.00
41.68
4.70
436
452
0.250510
TGTGGTGCAAATGAGCCGTA
60.251
50.000
0.00
0.00
0.00
4.02
468
484
0.306533
TTTGTCTCCGCGTTTCTTGC
59.693
50.000
4.92
0.00
0.00
4.01
559
587
1.635663
GGCAATCGGTGGTCAAGTCG
61.636
60.000
0.00
0.00
0.00
4.18
649
677
9.065871
CACTTGCTAGTTGCTAAATGTTTTATC
57.934
33.333
0.00
0.00
43.37
1.75
688
716
5.605534
ACATGCTATACAGAATTCGAGCTT
58.394
37.500
15.41
9.63
0.00
3.74
690
718
4.621991
TGCTATACAGAATTCGAGCTTCC
58.378
43.478
15.41
1.32
0.00
3.46
691
719
3.991121
GCTATACAGAATTCGAGCTTCCC
59.009
47.826
0.00
0.00
0.00
3.97
695
723
2.303022
ACAGAATTCGAGCTTCCCTCAA
59.697
45.455
0.00
0.00
40.78
3.02
701
729
2.888594
TCGAGCTTCCCTCAATTAACG
58.111
47.619
0.00
0.00
40.78
3.18
707
735
4.080863
AGCTTCCCTCAATTAACGAGTGAT
60.081
41.667
0.00
0.00
31.04
3.06
709
737
5.123979
GCTTCCCTCAATTAACGAGTGATTT
59.876
40.000
0.00
0.00
31.04
2.17
710
738
6.675728
GCTTCCCTCAATTAACGAGTGATTTC
60.676
42.308
0.00
0.00
31.04
2.17
732
760
9.847224
ATTTCGATTGGATTACTTGTTAGGTAT
57.153
29.630
0.00
0.00
0.00
2.73
734
762
7.214381
TCGATTGGATTACTTGTTAGGTATGG
58.786
38.462
0.00
0.00
0.00
2.74
746
776
7.292591
ACTTGTTAGGTATGGCTATGACCTTAT
59.707
37.037
13.59
0.00
40.85
1.73
750
780
9.000486
GTTAGGTATGGCTATGACCTTATTTTC
58.000
37.037
13.59
0.00
40.85
2.29
751
781
7.149202
AGGTATGGCTATGACCTTATTTTCA
57.851
36.000
0.00
0.00
40.85
2.69
766
801
8.520351
ACCTTATTTTCAACAAGTTAGGTATGC
58.480
33.333
0.00
0.00
32.03
3.14
783
818
2.672961
TGCGAACAGGGAATCTACTG
57.327
50.000
4.47
4.47
40.48
2.74
838
881
2.088950
TCCTGTTAACAAGTAGCGCC
57.911
50.000
10.03
0.00
0.00
6.53
882
925
1.582389
AGAGAGGCTGCTGATCCTTT
58.418
50.000
0.00
0.00
31.71
3.11
902
945
7.175104
TCCTTTCTTGTCTTATTGTAGGCATT
58.825
34.615
0.00
0.00
28.36
3.56
915
958
5.309323
TGTAGGCATTACAGAAATTGCAC
57.691
39.130
0.00
0.00
37.35
4.57
925
970
1.963515
AGAAATTGCACTGGGTTGGAC
59.036
47.619
0.00
0.00
0.00
4.02
926
971
1.000843
GAAATTGCACTGGGTTGGACC
59.999
52.381
0.00
0.00
37.60
4.46
1056
1101
7.008901
ACGACATACGCGGATAATATTTATGTG
59.991
37.037
12.47
9.14
46.94
3.21
1209
1254
1.742268
GCTGCATTCCAGAACTCCTTC
59.258
52.381
0.00
0.00
44.64
3.46
1215
1260
5.189180
GCATTCCAGAACTCCTTCTACAAT
58.811
41.667
0.00
0.00
34.74
2.71
1221
1266
4.869297
CAGAACTCCTTCTACAATCAGCAG
59.131
45.833
0.00
0.00
34.74
4.24
1224
1269
1.210478
TCCTTCTACAATCAGCAGGCC
59.790
52.381
0.00
0.00
29.87
5.19
1233
1278
0.176680
ATCAGCAGGCCTCACTAACG
59.823
55.000
0.00
0.00
0.00
3.18
1242
1287
1.153549
CTCACTAACGCCCTGCTCC
60.154
63.158
0.00
0.00
0.00
4.70
1268
1313
2.294979
GGAAAAAGACTCACCGGTGTT
58.705
47.619
32.74
21.49
0.00
3.32
1677
1722
3.538591
TCACAGGATTGCAGCTTATCTG
58.461
45.455
0.00
0.00
45.62
2.90
1698
1743
2.034687
GAGGGCCTTGCTGCAAGA
59.965
61.111
36.69
8.92
43.42
3.02
1716
1761
4.363999
CAAGAATAGTAGCTTCAGGGACG
58.636
47.826
0.00
0.00
0.00
4.79
1797
1842
3.693085
TGCAAATCCTCTTTGAGATCTGC
59.307
43.478
0.00
0.00
0.00
4.26
1947
1992
8.644619
CAGTTTATGAAAGATGATGCAAACAAG
58.355
33.333
0.00
0.00
0.00
3.16
2354
2399
4.278669
TGCGGCAGTAATTTTGGTTCTTTA
59.721
37.500
0.00
0.00
0.00
1.85
2363
2408
8.539544
AGTAATTTTGGTTCTTTATGGATTGGG
58.460
33.333
0.00
0.00
0.00
4.12
2390
2435
6.214412
AGTTTCTCCACATCCTTTCTAGACAT
59.786
38.462
0.00
0.00
0.00
3.06
2443
2572
8.647796
TCTATTAACTCTTGTGTTTCTCTTCCA
58.352
33.333
0.00
0.00
0.00
3.53
2584
2713
2.943690
CAGAATGAATGTGGAGAGGCAG
59.056
50.000
0.00
0.00
39.69
4.85
2651
2780
0.458669
TCGCGTGGAGAGGTAATTCC
59.541
55.000
5.77
0.00
0.00
3.01
2661
2790
2.012673
GAGGTAATTCCAGTGCTGCTG
58.987
52.381
0.00
2.51
44.63
4.41
2696
2831
5.865552
CGTCATGCAAATTCTTCTTCCAAAT
59.134
36.000
0.00
0.00
0.00
2.32
2706
2841
9.822185
AAATTCTTCTTCCAAATTATGCATACC
57.178
29.630
5.74
0.00
0.00
2.73
2707
2842
7.953005
TTCTTCTTCCAAATTATGCATACCA
57.047
32.000
5.74
0.00
0.00
3.25
2742
2877
5.468746
GTGGCTGACAGTGAAGTTGTTTATA
59.531
40.000
3.99
0.00
0.00
0.98
2764
2899
0.673644
CCAGGTACGAAGTTGCTGGG
60.674
60.000
0.00
0.00
37.78
4.45
2949
3084
3.272334
CTCCGCGTGGCAATAGGC
61.272
66.667
11.05
0.00
43.74
3.93
3010
3145
0.543883
AGGAGCTTCTGGTGCAGAGA
60.544
55.000
0.00
0.00
41.75
3.10
3232
3367
6.615264
TGCTAGAACATACTCCTAAGTACG
57.385
41.667
0.00
0.00
40.74
3.67
3233
3368
6.118170
TGCTAGAACATACTCCTAAGTACGT
58.882
40.000
0.00
0.00
40.74
3.57
3234
3369
7.275183
TGCTAGAACATACTCCTAAGTACGTA
58.725
38.462
0.00
0.00
40.74
3.57
3235
3370
7.225538
TGCTAGAACATACTCCTAAGTACGTAC
59.774
40.741
18.10
18.10
40.74
3.67
3446
3581
5.630061
CATGCATGTCACGTGATAAAAAGA
58.370
37.500
23.12
3.41
0.00
2.52
3522
3662
6.757897
TTTGCCCTTGTATAACAGATCAAG
57.242
37.500
0.00
0.00
37.57
3.02
3576
3716
5.247337
TCATTGGATATATACGCACCCTGAA
59.753
40.000
0.00
0.00
0.00
3.02
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
2
3
0.250901
CGCCCCAAGAATATCCCCAG
60.251
60.000
0.00
0.00
0.00
4.45
57
58
1.799258
CTCCCAAACAGCACAGGCAC
61.799
60.000
0.00
0.00
44.61
5.01
148
149
1.527611
ATCACGATGGCAGCATGGG
60.528
57.895
2.73
0.00
35.86
4.00
161
162
2.670414
GCTTTCTCCTCTGAACATCACG
59.330
50.000
0.00
0.00
0.00
4.35
176
177
2.378038
TCAAACAAGGTGCTGCTTTCT
58.622
42.857
0.00
0.00
0.00
2.52
180
181
0.316204
GCATCAAACAAGGTGCTGCT
59.684
50.000
0.00
0.00
35.69
4.24
182
183
2.736144
ATGCATCAAACAAGGTGCTG
57.264
45.000
0.00
0.00
38.37
4.41
281
292
7.619050
TGCTTAAATCTATTGGGATGCAAAAA
58.381
30.769
0.00
0.00
0.00
1.94
379
395
4.882427
TGTGAAAAATCCCAAGTAACACGA
59.118
37.500
0.00
0.00
0.00
4.35
381
397
5.163499
TGGTGTGAAAAATCCCAAGTAACAC
60.163
40.000
0.00
0.00
35.74
3.32
433
449
5.006746
GGAGACAAAATATCAGCCAAGTACG
59.993
44.000
0.00
0.00
0.00
3.67
436
452
3.941483
CGGAGACAAAATATCAGCCAAGT
59.059
43.478
0.00
0.00
0.00
3.16
493
521
9.509855
CGAGAATAATCATATCTACAAGTAGCC
57.490
37.037
2.37
0.00
33.32
3.93
559
587
1.226746
ACTGCCTAACTTGCAACGAC
58.773
50.000
0.00
0.00
38.46
4.34
690
718
6.589830
ATCGAAATCACTCGTTAATTGAGG
57.410
37.500
11.11
0.00
39.84
3.86
691
719
6.901887
CCAATCGAAATCACTCGTTAATTGAG
59.098
38.462
0.00
6.23
39.84
3.02
695
723
7.553881
AATCCAATCGAAATCACTCGTTAAT
57.446
32.000
0.00
0.00
39.84
1.40
701
729
7.308782
ACAAGTAATCCAATCGAAATCACTC
57.691
36.000
0.00
0.00
0.00
3.51
707
735
9.104965
CATACCTAACAAGTAATCCAATCGAAA
57.895
33.333
0.00
0.00
0.00
3.46
709
737
7.214381
CCATACCTAACAAGTAATCCAATCGA
58.786
38.462
0.00
0.00
0.00
3.59
710
738
6.073222
GCCATACCTAACAAGTAATCCAATCG
60.073
42.308
0.00
0.00
0.00
3.34
732
760
7.156876
CTTGTTGAAAATAAGGTCATAGCCA
57.843
36.000
0.00
0.00
40.81
4.75
734
762
9.774742
CTAACTTGTTGAAAATAAGGTCATAGC
57.225
33.333
0.00
0.00
41.38
2.97
746
776
6.038382
TGTTCGCATACCTAACTTGTTGAAAA
59.962
34.615
0.00
0.00
0.00
2.29
750
780
4.142902
CCTGTTCGCATACCTAACTTGTTG
60.143
45.833
0.00
0.00
0.00
3.33
751
781
4.000988
CCTGTTCGCATACCTAACTTGTT
58.999
43.478
0.00
0.00
0.00
2.83
766
801
2.761208
AGTCCAGTAGATTCCCTGTTCG
59.239
50.000
0.00
0.00
0.00
3.95
882
925
7.847096
TCTGTAATGCCTACAATAAGACAAGA
58.153
34.615
0.00
0.00
40.06
3.02
902
945
2.890311
CCAACCCAGTGCAATTTCTGTA
59.110
45.455
0.00
0.00
0.00
2.74
915
958
2.171448
CCTCAGATTAGGTCCAACCCAG
59.829
54.545
0.00
0.00
39.75
4.45
925
970
6.940739
TCTTTCTTCAGAACCTCAGATTAGG
58.059
40.000
0.00
0.00
42.82
2.69
926
971
7.548780
CCTTCTTTCTTCAGAACCTCAGATTAG
59.451
40.741
0.00
0.00
33.13
1.73
1056
1101
0.108424
TGGGTGCGCCAAATTTATGC
60.108
50.000
19.98
0.00
36.17
3.14
1209
1254
1.209019
AGTGAGGCCTGCTGATTGTAG
59.791
52.381
12.00
0.00
0.00
2.74
1215
1260
1.591703
CGTTAGTGAGGCCTGCTGA
59.408
57.895
12.00
1.42
0.00
4.26
1224
1269
1.153549
GGAGCAGGGCGTTAGTGAG
60.154
63.158
0.00
0.00
0.00
3.51
1242
1287
1.128692
GGTGAGTCTTTTTCCGCATCG
59.871
52.381
0.00
0.00
0.00
3.84
1248
1293
1.963172
ACACCGGTGAGTCTTTTTCC
58.037
50.000
40.21
0.00
0.00
3.13
1250
1295
3.203716
GAGAACACCGGTGAGTCTTTTT
58.796
45.455
40.21
22.04
31.93
1.94
1268
1313
4.101585
AGTTCTGTTGAGACACATTGGAGA
59.898
41.667
0.00
0.00
0.00
3.71
1698
1743
2.040178
CCCGTCCCTGAAGCTACTATT
58.960
52.381
0.00
0.00
0.00
1.73
1716
1761
1.678101
GTCAATGCCTTGTAGATGCCC
59.322
52.381
1.49
0.00
33.87
5.36
1797
1842
3.631686
TGAAACCAAATCGATAGCATGGG
59.368
43.478
18.18
5.75
37.19
4.00
1893
1938
4.408921
AGTGTAATATACTGGCTGCCTTGA
59.591
41.667
21.03
4.80
0.00
3.02
1947
1992
2.423538
AGTTATTCTCAAATGGCGTGGC
59.576
45.455
0.00
0.00
0.00
5.01
2280
2325
5.163683
CCTTGTCTGAAATGGAGCAGTATTG
60.164
44.000
0.00
0.00
33.90
1.90
2354
2399
3.591527
TGTGGAGAAACTACCCAATCCAT
59.408
43.478
0.00
0.00
38.95
3.41
2363
2408
7.036829
GTCTAGAAAGGATGTGGAGAAACTAC
58.963
42.308
0.00
0.00
0.00
2.73
2423
2552
5.355350
CAGTTGGAAGAGAAACACAAGAGTT
59.645
40.000
0.00
0.00
0.00
3.01
2443
2572
0.111639
TTTTTAGGGGCTCGGCAGTT
59.888
50.000
0.00
0.00
0.00
3.16
2584
2713
4.773323
AACAATTTCTCTAGCAAGGCAC
57.227
40.909
0.00
0.00
0.00
5.01
2593
2722
8.514594
CAAGCCAAGATGTTAACAATTTCTCTA
58.485
33.333
13.23
0.00
0.00
2.43
2594
2723
7.373493
CAAGCCAAGATGTTAACAATTTCTCT
58.627
34.615
13.23
7.60
0.00
3.10
2661
2790
6.477033
AGAATTTGCATGACGTATGAGTAGAC
59.523
38.462
0.00
0.00
39.21
2.59
2696
2831
5.125257
CACATGGAGTTTGTGGTATGCATAA
59.875
40.000
8.28
0.00
40.60
1.90
2706
2841
1.267806
GTCAGCCACATGGAGTTTGTG
59.732
52.381
0.87
0.00
43.25
3.33
2707
2842
1.133823
TGTCAGCCACATGGAGTTTGT
60.134
47.619
0.87
0.00
37.39
2.83
2742
2877
1.000955
CAGCAACTTCGTACCTGGAGT
59.999
52.381
0.00
0.00
0.00
3.85
2764
2899
1.943340
GTCATTCTCGCCCTCCATTTC
59.057
52.381
0.00
0.00
0.00
2.17
2949
3084
2.507992
CCAAGTCAGCGAGCTCGG
60.508
66.667
35.10
20.83
40.23
4.63
3010
3145
5.270893
GTGGTTCACACCCTTTTTACAAT
57.729
39.130
0.00
0.00
43.49
2.71
3232
3367
4.336993
TCCCAAACAGACACAACATTGTAC
59.663
41.667
0.00
0.00
39.91
2.90
3233
3368
4.527944
TCCCAAACAGACACAACATTGTA
58.472
39.130
0.00
0.00
39.91
2.41
3234
3369
3.360867
TCCCAAACAGACACAACATTGT
58.639
40.909
0.00
0.00
43.36
2.71
3235
3370
4.111916
GTTCCCAAACAGACACAACATTG
58.888
43.478
0.00
0.00
35.36
2.82
3446
3581
6.779049
TGTCGACCTACATATTAATACCCTGT
59.221
38.462
14.12
1.65
0.00
4.00
3522
3662
4.689345
GCGTCATACATACCCATTCCTAAC
59.311
45.833
0.00
0.00
0.00
2.34
3576
3716
8.361169
ACCTACTACCAAAATTATGTGCATTT
57.639
30.769
0.00
0.00
0.00
2.32
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.