Multiple sequence alignment - TraesCS3D01G402800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G402800 chr3D 100.000 5982 0 0 1 5982 516960027 516966008 0.000000e+00 11047.0
1 TraesCS3D01G402800 chr3B 92.054 2152 124 30 3391 5534 680333300 680331188 0.000000e+00 2983.0
2 TraesCS3D01G402800 chr3B 93.602 1266 61 10 1975 3235 680334552 680333302 0.000000e+00 1871.0
3 TraesCS3D01G402800 chr3B 91.694 1240 57 16 756 1979 680335790 680334581 0.000000e+00 1677.0
4 TraesCS3D01G402800 chr3B 93.113 755 27 6 1 741 680336518 680335775 0.000000e+00 1083.0
5 TraesCS3D01G402800 chr3B 89.573 422 34 7 5526 5945 680318181 680317768 1.480000e-145 527.0
6 TraesCS3D01G402800 chr3A 90.457 1991 119 30 24 1974 652773865 652775824 0.000000e+00 2558.0
7 TraesCS3D01G402800 chr3A 91.218 1856 105 34 3391 5211 652777132 652778964 0.000000e+00 2471.0
8 TraesCS3D01G402800 chr3A 93.014 1274 66 11 1976 3235 652775866 652777130 0.000000e+00 1838.0
9 TraesCS3D01G402800 chr3A 87.040 679 60 20 5285 5957 652779359 652780015 0.000000e+00 741.0
10 TraesCS3D01G402800 chr7D 83.733 375 46 6 25 394 26387605 26387969 2.060000e-89 340.0
11 TraesCS3D01G402800 chr5A 82.598 408 40 20 1 390 602265674 602265280 1.240000e-86 331.0
12 TraesCS3D01G402800 chr5D 81.418 409 45 18 1 392 482458067 482457673 7.530000e-79 305.0
13 TraesCS3D01G402800 chr7A 80.789 380 52 11 25 394 15280663 15281031 1.640000e-70 278.0
14 TraesCS3D01G402800 chrUn 80.729 384 37 16 1 383 380809538 380809191 1.280000e-66 265.0
15 TraesCS3D01G402800 chr4D 80.729 384 37 16 1 383 438786225 438785878 1.280000e-66 265.0
16 TraesCS3D01G402800 chr4B 85.586 222 26 4 3 223 542749960 542749744 1.680000e-55 228.0
17 TraesCS3D01G402800 chr1B 89.130 92 10 0 48 139 629110999 629111090 1.360000e-21 115.0
18 TraesCS3D01G402800 chr2B 81.159 138 19 2 257 394 770494465 770494335 2.950000e-18 104.0
19 TraesCS3D01G402800 chr2B 92.958 71 4 1 53 123 770221320 770221251 1.060000e-17 102.0
20 TraesCS3D01G402800 chr5B 93.651 63 4 0 48 110 248819280 248819342 1.770000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G402800 chr3D 516960027 516966008 5981 False 11047.0 11047 100.00000 1 5982 1 chr3D.!!$F1 5981
1 TraesCS3D01G402800 chr3B 680331188 680336518 5330 True 1903.5 2983 92.61575 1 5534 4 chr3B.!!$R2 5533
2 TraesCS3D01G402800 chr3A 652773865 652780015 6150 False 1902.0 2558 90.43225 24 5957 4 chr3A.!!$F1 5933

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
373 395 1.295792 GCGGGATGTGATTTTAGCGA 58.704 50.0 0.00 0.0 0.00 4.93 F
1250 1310 0.321919 AAGCTCGCAATGGCAGAGAA 60.322 50.0 15.36 0.0 40.62 2.87 F
1933 2012 0.661552 CTTGAAGGAGCATCATGGCG 59.338 55.0 0.00 0.0 39.27 5.69 F
3090 3228 0.523072 GTGTGGTTGGTAGCAGCATG 59.477 55.0 11.00 0.0 40.87 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1532 1592 0.400594 ACAAGAGTGGGTGGTTAGGC 59.599 55.0 0.00 0.0 0.00 3.93 R
3090 3228 1.295792 TTGACGGTGTGAAGTCTTGC 58.704 50.0 0.00 0.0 38.16 4.01 R
3558 3696 0.249120 TCAGGGGAACATGCGTAGTG 59.751 55.0 0.00 0.0 43.15 2.74 R
5064 5230 0.525668 CCCGAGTTCGATTCTGGACG 60.526 60.0 2.59 0.0 43.02 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 128 6.926272 GGTTGTTGTATTGTGATTTGCCTTTA 59.074 34.615 0.00 0.00 0.00 1.85
251 260 1.436600 CGGCACAGATCATATCCTGC 58.563 55.000 0.00 0.00 34.38 4.85
293 312 7.346751 ACAAGTTTACATGATTTGTTCCACT 57.653 32.000 0.00 0.00 39.87 4.00
311 330 2.682494 GGAGGCCTCACGGTACCA 60.682 66.667 33.29 0.00 0.00 3.25
373 395 1.295792 GCGGGATGTGATTTTAGCGA 58.704 50.000 0.00 0.00 0.00 4.93
381 403 5.466728 GGATGTGATTTTAGCGAATCTGCTA 59.533 40.000 10.43 3.44 45.14 3.49
472 495 1.993301 CTTTGGGGTCCTTCTAAGGGT 59.007 52.381 8.87 0.00 46.47 4.34
631 657 6.422100 TCAAAGAAGAGAAAGAGTGATTCGTG 59.578 38.462 0.00 0.00 32.04 4.35
724 750 3.296709 GAGCGAAAGGGACCAGCGA 62.297 63.158 0.00 0.00 0.00 4.93
732 758 4.022589 CGAAAGGGACCAGCGACTTATATA 60.023 45.833 0.00 0.00 0.00 0.86
733 759 5.508489 CGAAAGGGACCAGCGACTTATATAA 60.508 44.000 0.00 0.00 0.00 0.98
734 760 4.868314 AGGGACCAGCGACTTATATAAC 57.132 45.455 0.00 0.00 0.00 1.89
735 761 3.255149 AGGGACCAGCGACTTATATAACG 59.745 47.826 0.00 2.08 0.00 3.18
736 762 3.254166 GGGACCAGCGACTTATATAACGA 59.746 47.826 9.07 0.00 0.00 3.85
737 763 4.474113 GGACCAGCGACTTATATAACGAG 58.526 47.826 9.07 0.00 0.00 4.18
738 764 4.023365 GGACCAGCGACTTATATAACGAGT 60.023 45.833 9.07 0.00 0.00 4.18
739 765 5.506982 GGACCAGCGACTTATATAACGAGTT 60.507 44.000 9.07 0.00 0.00 3.01
740 766 5.517904 ACCAGCGACTTATATAACGAGTTC 58.482 41.667 9.07 0.00 0.00 3.01
741 767 4.916249 CCAGCGACTTATATAACGAGTTCC 59.084 45.833 9.07 0.00 0.00 3.62
742 768 5.278364 CCAGCGACTTATATAACGAGTTCCT 60.278 44.000 9.07 0.00 0.00 3.36
743 769 5.852229 CAGCGACTTATATAACGAGTTCCTC 59.148 44.000 9.07 0.00 0.00 3.71
744 770 5.048852 AGCGACTTATATAACGAGTTCCTCC 60.049 44.000 9.07 0.00 0.00 4.30
745 771 5.380651 CGACTTATATAACGAGTTCCTCCG 58.619 45.833 0.00 0.00 0.00 4.63
746 772 5.178252 CGACTTATATAACGAGTTCCTCCGA 59.822 44.000 0.00 0.00 0.00 4.55
747 773 6.293081 CGACTTATATAACGAGTTCCTCCGAA 60.293 42.308 0.00 0.00 0.00 4.30
748 774 6.968250 ACTTATATAACGAGTTCCTCCGAAG 58.032 40.000 0.00 0.00 0.00 3.79
749 775 6.769822 ACTTATATAACGAGTTCCTCCGAAGA 59.230 38.462 0.00 0.00 0.00 2.87
750 776 7.284034 ACTTATATAACGAGTTCCTCCGAAGAA 59.716 37.037 0.00 0.00 0.00 2.52
751 777 4.796038 ATAACGAGTTCCTCCGAAGAAA 57.204 40.909 0.00 0.00 0.00 2.52
752 778 3.464111 AACGAGTTCCTCCGAAGAAAA 57.536 42.857 0.00 0.00 0.00 2.29
753 779 3.464111 ACGAGTTCCTCCGAAGAAAAA 57.536 42.857 0.00 0.00 0.00 1.94
806 862 4.883354 CCCGCCCATTCCTGCTCC 62.883 72.222 0.00 0.00 0.00 4.70
807 863 4.883354 CCGCCCATTCCTGCTCCC 62.883 72.222 0.00 0.00 0.00 4.30
875 934 2.203015 ACGCGACAACAGCAAGGT 60.203 55.556 15.93 0.00 34.19 3.50
920 979 2.124695 GTTGATCCTCCGGCCACC 60.125 66.667 2.24 0.00 0.00 4.61
921 980 2.285368 TTGATCCTCCGGCCACCT 60.285 61.111 2.24 0.00 0.00 4.00
922 981 2.367202 TTGATCCTCCGGCCACCTC 61.367 63.158 2.24 0.00 0.00 3.85
938 998 1.751927 CTCCTCACTGGCAATGGGC 60.752 63.158 0.00 0.00 43.74 5.36
957 1017 2.112815 GCCCGCCATATATTCGCCC 61.113 63.158 0.00 0.00 0.00 6.13
1073 1133 1.878656 CTAATAGCCTCGCTCCCGGG 61.879 65.000 16.85 16.85 40.44 5.73
1247 1307 2.042259 CCAAGCTCGCAATGGCAGA 61.042 57.895 0.00 0.00 41.24 4.26
1248 1308 1.428219 CAAGCTCGCAATGGCAGAG 59.572 57.895 8.92 8.92 41.24 3.35
1249 1309 1.022982 CAAGCTCGCAATGGCAGAGA 61.023 55.000 15.36 0.00 40.62 3.10
1250 1310 0.321919 AAGCTCGCAATGGCAGAGAA 60.322 50.000 15.36 0.00 40.62 2.87
1251 1311 1.023513 AGCTCGCAATGGCAGAGAAC 61.024 55.000 15.36 2.21 40.62 3.01
1532 1592 1.410517 TCTCTTAGCCATTCTGCTCGG 59.589 52.381 0.00 0.00 41.68 4.63
1537 1601 1.153168 GCCATTCTGCTCGGCCTAA 60.153 57.895 0.00 0.00 40.07 2.69
1538 1602 1.440145 GCCATTCTGCTCGGCCTAAC 61.440 60.000 0.00 0.00 40.07 2.34
1539 1603 0.815615 CCATTCTGCTCGGCCTAACC 60.816 60.000 0.00 0.00 0.00 2.85
1590 1655 7.013655 TCTCGACTCTACATTCATCATTCATGA 59.986 37.037 0.00 0.00 39.99 3.07
1736 1801 9.173939 GTCACATTGAAGTTGATTCTTAGTTTG 57.826 33.333 0.00 0.00 38.83 2.93
1740 1805 8.961092 CATTGAAGTTGATTCTTAGTTTGTGTG 58.039 33.333 0.00 0.00 38.83 3.82
1757 1822 7.176515 AGTTTGTGTGATCCATGTGCTAATTAA 59.823 33.333 0.00 0.00 0.00 1.40
1759 1824 6.851609 TGTGTGATCCATGTGCTAATTAAAC 58.148 36.000 0.00 0.00 0.00 2.01
1820 1885 5.077564 TGCTGTCCTCTTCTTGTTAGAGTA 58.922 41.667 0.00 0.00 37.93 2.59
1821 1886 5.047943 TGCTGTCCTCTTCTTGTTAGAGTAC 60.048 44.000 0.00 0.00 37.93 2.73
1843 1908 5.666462 ACGTGTTAGGTGTATTCATGCATA 58.334 37.500 0.00 0.00 0.00 3.14
1851 1916 6.776744 AGGTGTATTCATGCATATCTGACAT 58.223 36.000 0.00 0.00 0.00 3.06
1873 1938 2.766313 TGCTTCCATATATGTGCCGAC 58.234 47.619 11.73 0.00 0.00 4.79
1894 1959 1.215673 TGGCTTTTGGTCCTGTTGGTA 59.784 47.619 0.00 0.00 34.23 3.25
1896 1961 2.897326 GGCTTTTGGTCCTGTTGGTAAT 59.103 45.455 0.00 0.00 34.23 1.89
1901 1980 5.941555 TTTGGTCCTGTTGGTAATTTTGT 57.058 34.783 0.00 0.00 34.23 2.83
1903 1982 5.523438 TGGTCCTGTTGGTAATTTTGTTC 57.477 39.130 0.00 0.00 34.23 3.18
1921 2000 5.102953 TGTTCATAGATGTCCCTTGAAGG 57.897 43.478 3.69 3.69 34.30 3.46
1933 2012 0.661552 CTTGAAGGAGCATCATGGCG 59.338 55.000 0.00 0.00 39.27 5.69
1982 2101 7.389053 AGAAGAGTGCCACTATTGAACTTTAAG 59.611 37.037 9.84 0.00 28.55 1.85
2090 2214 9.618890 TTTCCATTCTTGTTGGATAAGATAGAG 57.381 33.333 0.00 0.00 42.69 2.43
2120 2244 7.335673 TCATTCTTGTTTCAAGCGTATAATCCA 59.664 33.333 4.82 0.00 0.00 3.41
2123 2247 5.229921 TGTTTCAAGCGTATAATCCAAGC 57.770 39.130 0.00 0.00 0.00 4.01
2124 2248 4.941263 TGTTTCAAGCGTATAATCCAAGCT 59.059 37.500 0.00 0.00 40.20 3.74
2125 2249 5.163764 TGTTTCAAGCGTATAATCCAAGCTG 60.164 40.000 0.00 0.00 38.28 4.24
2134 2258 6.203723 GCGTATAATCCAAGCTGAGAAATTCT 59.796 38.462 0.00 0.00 0.00 2.40
2155 2279 1.905215 AGTAATGCAGTGCTCTGTCCT 59.095 47.619 17.60 1.90 43.05 3.85
2237 2363 2.158842 TGCTGTTGTTTGGGAATTTGGG 60.159 45.455 0.00 0.00 0.00 4.12
2246 2372 1.203001 TGGGAATTTGGGGTCACTGTC 60.203 52.381 0.00 0.00 0.00 3.51
2256 2382 2.158726 GGGGTCACTGTCCACTTTGTAA 60.159 50.000 0.00 0.00 0.00 2.41
2414 2540 1.656587 ACCTAGGTGATCAGGTTGCA 58.343 50.000 15.42 0.00 42.68 4.08
2511 2637 8.137437 ACATTTTCCTACACTCATTTTTCTGTG 58.863 33.333 0.00 0.00 36.59 3.66
2573 2699 8.711457 CATTCTTGAAAACATTGGTTACATTCC 58.289 33.333 0.00 0.00 35.82 3.01
2574 2700 7.353414 TCTTGAAAACATTGGTTACATTCCA 57.647 32.000 0.00 0.00 35.82 3.53
2589 2716 7.148590 GGTTACATTCCAATGCTCATTTTGTTC 60.149 37.037 0.00 0.00 40.04 3.18
2600 2727 9.798994 AATGCTCATTTTGTTCTATTTCAGATC 57.201 29.630 0.00 0.00 31.77 2.75
2633 2760 1.898863 AAGTATGCCCTGGATCACCT 58.101 50.000 0.00 0.00 37.04 4.00
2693 2820 2.028020 AGCTGCTTGGGTTGTACTAGAC 60.028 50.000 0.00 0.00 0.00 2.59
2731 2860 8.647143 AATTTATTGTTTAATCATTCCTGGCG 57.353 30.769 0.00 0.00 0.00 5.69
2770 2902 7.378728 GGAGCATTTGTTTGTTCAGTAGTTAAC 59.621 37.037 0.00 0.00 0.00 2.01
2947 3085 3.324117 GAGACGAAGGACCTACAAAACC 58.676 50.000 0.00 0.00 0.00 3.27
2951 3089 3.259902 CGAAGGACCTACAAAACCTAGC 58.740 50.000 0.00 0.00 32.06 3.42
2967 3105 3.056250 ACCTAGCAGTGTCACTTGATCTG 60.056 47.826 1.67 8.89 34.48 2.90
2976 3114 4.450419 GTGTCACTTGATCTGAGTTCCAAG 59.550 45.833 0.00 0.00 41.12 3.61
3090 3228 0.523072 GTGTGGTTGGTAGCAGCATG 59.477 55.000 11.00 0.00 40.87 4.06
3185 3323 9.282247 GACATATTTCTTCACTAAAGCACAATG 57.718 33.333 0.00 0.00 34.76 2.82
3207 3345 9.229784 CAATGATAAAGTTGCAACTAGCTTATG 57.770 33.333 31.31 19.79 45.94 1.90
3209 3347 8.335532 TGATAAAGTTGCAACTAGCTTATGTT 57.664 30.769 31.31 20.52 45.94 2.71
3210 3348 8.450964 TGATAAAGTTGCAACTAGCTTATGTTC 58.549 33.333 31.31 19.00 45.94 3.18
3216 3354 4.761739 TGCAACTAGCTTATGTTCTTTGCT 59.238 37.500 0.00 0.00 45.94 3.91
3231 3369 8.715191 TGTTCTTTGCTGAAATGTTAAAATGT 57.285 26.923 0.00 0.00 0.00 2.71
3235 3373 7.978414 TCTTTGCTGAAATGTTAAAATGTGACA 59.022 29.630 0.00 0.00 0.00 3.58
3236 3374 7.462109 TTGCTGAAATGTTAAAATGTGACAC 57.538 32.000 0.00 0.00 0.00 3.67
3237 3375 6.804677 TGCTGAAATGTTAAAATGTGACACT 58.195 32.000 7.20 0.00 0.00 3.55
3238 3376 6.696583 TGCTGAAATGTTAAAATGTGACACTG 59.303 34.615 7.20 0.00 0.00 3.66
3239 3377 6.346040 GCTGAAATGTTAAAATGTGACACTGC 60.346 38.462 7.20 0.00 0.00 4.40
3240 3378 6.567959 TGAAATGTTAAAATGTGACACTGCA 58.432 32.000 7.20 0.00 0.00 4.41
3241 3379 7.208777 TGAAATGTTAAAATGTGACACTGCAT 58.791 30.769 7.20 0.00 0.00 3.96
3242 3380 8.355913 TGAAATGTTAAAATGTGACACTGCATA 58.644 29.630 7.20 0.00 0.00 3.14
3243 3381 9.190858 GAAATGTTAAAATGTGACACTGCATAA 57.809 29.630 7.20 0.00 0.00 1.90
3244 3382 9.539825 AAATGTTAAAATGTGACACTGCATAAA 57.460 25.926 7.20 0.00 0.00 1.40
3245 3383 8.746922 ATGTTAAAATGTGACACTGCATAAAG 57.253 30.769 7.20 0.00 0.00 1.85
3246 3384 7.935520 TGTTAAAATGTGACACTGCATAAAGA 58.064 30.769 7.20 0.00 0.00 2.52
3247 3385 8.575589 TGTTAAAATGTGACACTGCATAAAGAT 58.424 29.630 7.20 0.00 0.00 2.40
3251 3389 8.565896 AAATGTGACACTGCATAAAGATAAGA 57.434 30.769 7.20 0.00 0.00 2.10
3252 3390 8.565896 AATGTGACACTGCATAAAGATAAGAA 57.434 30.769 7.20 0.00 0.00 2.52
3253 3391 7.364522 TGTGACACTGCATAAAGATAAGAAC 57.635 36.000 7.20 0.00 0.00 3.01
3254 3392 6.934083 TGTGACACTGCATAAAGATAAGAACA 59.066 34.615 7.20 0.00 0.00 3.18
3255 3393 7.095229 TGTGACACTGCATAAAGATAAGAACAC 60.095 37.037 7.20 0.00 0.00 3.32
3256 3394 7.118390 GTGACACTGCATAAAGATAAGAACACT 59.882 37.037 0.00 0.00 0.00 3.55
3257 3395 8.311109 TGACACTGCATAAAGATAAGAACACTA 58.689 33.333 0.00 0.00 0.00 2.74
3258 3396 9.319143 GACACTGCATAAAGATAAGAACACTAT 57.681 33.333 0.00 0.00 0.00 2.12
3259 3397 9.319143 ACACTGCATAAAGATAAGAACACTATC 57.681 33.333 0.00 0.00 0.00 2.08
3260 3398 9.539825 CACTGCATAAAGATAAGAACACTATCT 57.460 33.333 0.00 0.00 32.42 1.98
3261 3399 9.539825 ACTGCATAAAGATAAGAACACTATCTG 57.460 33.333 0.00 0.00 31.58 2.90
3262 3400 8.370493 TGCATAAAGATAAGAACACTATCTGC 57.630 34.615 0.00 0.00 31.58 4.26
3263 3401 7.442364 TGCATAAAGATAAGAACACTATCTGCC 59.558 37.037 0.00 0.00 31.58 4.85
3264 3402 7.095017 GCATAAAGATAAGAACACTATCTGCCC 60.095 40.741 0.00 0.00 31.58 5.36
3265 3403 6.567602 AAAGATAAGAACACTATCTGCCCT 57.432 37.500 0.00 0.00 31.58 5.19
3266 3404 7.676683 AAAGATAAGAACACTATCTGCCCTA 57.323 36.000 0.00 0.00 31.58 3.53
3267 3405 6.909550 AGATAAGAACACTATCTGCCCTAG 57.090 41.667 0.00 0.00 0.00 3.02
3268 3406 6.615617 AGATAAGAACACTATCTGCCCTAGA 58.384 40.000 0.00 0.00 40.37 2.43
3269 3407 7.069986 AGATAAGAACACTATCTGCCCTAGAA 58.930 38.462 0.00 0.00 39.30 2.10
3270 3408 5.606348 AAGAACACTATCTGCCCTAGAAG 57.394 43.478 0.00 0.00 39.30 2.85
3271 3409 3.964031 AGAACACTATCTGCCCTAGAAGG 59.036 47.826 0.00 0.00 39.30 3.46
3285 3423 5.886960 CCTAGAAGGGAAAGTTCATGTTG 57.113 43.478 0.00 0.00 0.00 3.33
3286 3424 5.316987 CCTAGAAGGGAAAGTTCATGTTGT 58.683 41.667 0.00 0.00 0.00 3.32
3287 3425 6.472887 CCTAGAAGGGAAAGTTCATGTTGTA 58.527 40.000 0.00 0.00 0.00 2.41
3288 3426 6.371825 CCTAGAAGGGAAAGTTCATGTTGTAC 59.628 42.308 0.00 0.00 0.00 2.90
3289 3427 5.941788 AGAAGGGAAAGTTCATGTTGTACT 58.058 37.500 0.00 0.00 28.86 2.73
3290 3428 7.074653 AGAAGGGAAAGTTCATGTTGTACTA 57.925 36.000 0.00 0.00 27.67 1.82
3291 3429 7.514721 AGAAGGGAAAGTTCATGTTGTACTAA 58.485 34.615 0.00 0.00 27.67 2.24
3292 3430 8.164070 AGAAGGGAAAGTTCATGTTGTACTAAT 58.836 33.333 0.00 0.00 27.67 1.73
3293 3431 7.687941 AGGGAAAGTTCATGTTGTACTAATG 57.312 36.000 0.00 0.00 27.67 1.90
3294 3432 6.659242 AGGGAAAGTTCATGTTGTACTAATGG 59.341 38.462 0.00 0.00 27.67 3.16
3295 3433 6.433093 GGGAAAGTTCATGTTGTACTAATGGT 59.567 38.462 0.00 0.00 27.67 3.55
3296 3434 7.305474 GGAAAGTTCATGTTGTACTAATGGTG 58.695 38.462 0.00 0.00 27.67 4.17
3297 3435 6.817765 AAGTTCATGTTGTACTAATGGTGG 57.182 37.500 0.00 0.00 27.67 4.61
3298 3436 5.876357 AGTTCATGTTGTACTAATGGTGGT 58.124 37.500 0.00 0.00 0.00 4.16
3299 3437 7.011499 AGTTCATGTTGTACTAATGGTGGTA 57.989 36.000 0.00 0.00 0.00 3.25
3300 3438 7.455058 AGTTCATGTTGTACTAATGGTGGTAA 58.545 34.615 0.00 0.00 0.00 2.85
3301 3439 7.389607 AGTTCATGTTGTACTAATGGTGGTAAC 59.610 37.037 0.00 0.00 0.00 2.50
3318 3456 5.067273 TGGTAACACACTTAGGTTTGATGG 58.933 41.667 0.00 0.00 46.17 3.51
3319 3457 5.067954 GGTAACACACTTAGGTTTGATGGT 58.932 41.667 0.00 0.00 0.00 3.55
3320 3458 5.533528 GGTAACACACTTAGGTTTGATGGTT 59.466 40.000 0.00 0.00 0.00 3.67
3321 3459 5.514274 AACACACTTAGGTTTGATGGTTG 57.486 39.130 0.00 0.00 0.00 3.77
3322 3460 4.787551 ACACACTTAGGTTTGATGGTTGA 58.212 39.130 0.00 0.00 0.00 3.18
3323 3461 5.385198 ACACACTTAGGTTTGATGGTTGAT 58.615 37.500 0.00 0.00 0.00 2.57
3324 3462 5.241506 ACACACTTAGGTTTGATGGTTGATG 59.758 40.000 0.00 0.00 0.00 3.07
3325 3463 5.241506 CACACTTAGGTTTGATGGTTGATGT 59.758 40.000 0.00 0.00 0.00 3.06
3326 3464 5.473504 ACACTTAGGTTTGATGGTTGATGTC 59.526 40.000 0.00 0.00 0.00 3.06
3327 3465 5.473162 CACTTAGGTTTGATGGTTGATGTCA 59.527 40.000 0.00 0.00 0.00 3.58
3328 3466 5.473504 ACTTAGGTTTGATGGTTGATGTCAC 59.526 40.000 0.00 0.00 0.00 3.67
3329 3467 3.831323 AGGTTTGATGGTTGATGTCACA 58.169 40.909 0.00 0.00 0.00 3.58
3330 3468 4.214310 AGGTTTGATGGTTGATGTCACAA 58.786 39.130 0.00 0.00 0.00 3.33
3331 3469 4.648762 AGGTTTGATGGTTGATGTCACAAA 59.351 37.500 0.00 0.00 0.00 2.83
3332 3470 5.305128 AGGTTTGATGGTTGATGTCACAAAT 59.695 36.000 0.00 0.00 0.00 2.32
3333 3471 5.406175 GGTTTGATGGTTGATGTCACAAATG 59.594 40.000 0.00 0.00 0.00 2.32
3334 3472 6.215121 GTTTGATGGTTGATGTCACAAATGA 58.785 36.000 0.00 0.00 0.00 2.57
3335 3473 6.402456 TTGATGGTTGATGTCACAAATGAA 57.598 33.333 0.00 0.00 36.31 2.57
3336 3474 6.016213 TGATGGTTGATGTCACAAATGAAG 57.984 37.500 0.00 0.00 36.31 3.02
3337 3475 5.769162 TGATGGTTGATGTCACAAATGAAGA 59.231 36.000 0.00 0.00 36.31 2.87
3338 3476 6.264970 TGATGGTTGATGTCACAAATGAAGAA 59.735 34.615 0.00 0.00 36.31 2.52
3339 3477 6.462552 TGGTTGATGTCACAAATGAAGAAA 57.537 33.333 0.00 0.00 36.31 2.52
3340 3478 6.272318 TGGTTGATGTCACAAATGAAGAAAC 58.728 36.000 0.00 0.00 36.31 2.78
3341 3479 6.127507 TGGTTGATGTCACAAATGAAGAAACA 60.128 34.615 0.00 0.00 36.31 2.83
3342 3480 6.925165 GGTTGATGTCACAAATGAAGAAACAT 59.075 34.615 0.00 0.00 36.31 2.71
3343 3481 7.095940 GGTTGATGTCACAAATGAAGAAACATG 60.096 37.037 0.00 0.00 36.31 3.21
3344 3482 7.041635 TGATGTCACAAATGAAGAAACATGT 57.958 32.000 0.00 0.00 36.31 3.21
3345 3483 8.164058 TGATGTCACAAATGAAGAAACATGTA 57.836 30.769 0.00 0.00 36.31 2.29
3346 3484 8.291740 TGATGTCACAAATGAAGAAACATGTAG 58.708 33.333 0.00 0.00 36.31 2.74
3347 3485 7.566760 TGTCACAAATGAAGAAACATGTAGT 57.433 32.000 0.00 0.00 36.31 2.73
3348 3486 7.995289 TGTCACAAATGAAGAAACATGTAGTT 58.005 30.769 0.00 0.00 38.27 2.24
3349 3487 8.128582 TGTCACAAATGAAGAAACATGTAGTTC 58.871 33.333 0.00 0.00 36.51 3.01
3350 3488 7.591426 GTCACAAATGAAGAAACATGTAGTTCC 59.409 37.037 0.00 0.00 36.51 3.62
3351 3489 7.502226 TCACAAATGAAGAAACATGTAGTTCCT 59.498 33.333 0.00 0.00 40.26 3.36
3352 3490 8.137437 CACAAATGAAGAAACATGTAGTTCCTT 58.863 33.333 0.00 0.00 37.52 3.36
3353 3491 9.349713 ACAAATGAAGAAACATGTAGTTCCTTA 57.650 29.630 0.00 0.00 34.68 2.69
3354 3492 9.612620 CAAATGAAGAAACATGTAGTTCCTTAC 57.387 33.333 0.00 0.00 34.68 2.34
3355 3493 7.923414 ATGAAGAAACATGTAGTTCCTTACC 57.077 36.000 0.00 0.00 34.68 2.85
3356 3494 6.235664 TGAAGAAACATGTAGTTCCTTACCC 58.764 40.000 0.00 0.00 34.68 3.69
3357 3495 4.828829 AGAAACATGTAGTTCCTTACCCG 58.171 43.478 0.00 0.00 40.26 5.28
3358 3496 2.685850 ACATGTAGTTCCTTACCCGC 57.314 50.000 0.00 0.00 0.00 6.13
3359 3497 1.903860 ACATGTAGTTCCTTACCCGCA 59.096 47.619 0.00 0.00 0.00 5.69
3360 3498 2.504175 ACATGTAGTTCCTTACCCGCAT 59.496 45.455 0.00 0.00 0.00 4.73
3361 3499 3.054655 ACATGTAGTTCCTTACCCGCATT 60.055 43.478 0.00 0.00 0.00 3.56
3362 3500 3.255969 TGTAGTTCCTTACCCGCATTC 57.744 47.619 0.00 0.00 0.00 2.67
3363 3501 2.835764 TGTAGTTCCTTACCCGCATTCT 59.164 45.455 0.00 0.00 0.00 2.40
3364 3502 2.693267 AGTTCCTTACCCGCATTCTC 57.307 50.000 0.00 0.00 0.00 2.87
3365 3503 1.209747 AGTTCCTTACCCGCATTCTCC 59.790 52.381 0.00 0.00 0.00 3.71
3366 3504 0.544697 TTCCTTACCCGCATTCTCCC 59.455 55.000 0.00 0.00 0.00 4.30
3367 3505 1.148498 CCTTACCCGCATTCTCCCC 59.852 63.158 0.00 0.00 0.00 4.81
3368 3506 1.148498 CTTACCCGCATTCTCCCCC 59.852 63.158 0.00 0.00 0.00 5.40
3385 3523 3.268023 CCCCCTCATGTTAGTTCTGAC 57.732 52.381 0.00 0.00 0.00 3.51
3386 3524 2.092914 CCCCCTCATGTTAGTTCTGACC 60.093 54.545 0.00 0.00 0.00 4.02
3387 3525 2.840651 CCCCTCATGTTAGTTCTGACCT 59.159 50.000 0.00 0.00 0.00 3.85
3388 3526 4.030913 CCCCTCATGTTAGTTCTGACCTA 58.969 47.826 0.00 0.00 0.00 3.08
3389 3527 4.100189 CCCCTCATGTTAGTTCTGACCTAG 59.900 50.000 0.00 0.00 0.00 3.02
3406 3544 7.886970 TCTGACCTAGTAGTAGTGCTTAAAAGA 59.113 37.037 3.91 0.00 0.00 2.52
3518 3656 7.949690 AACTGTAGTTTTACCTTCCAAAAGT 57.050 32.000 0.00 0.00 33.93 2.66
3633 3771 2.474816 GGCCACTACGATTCATCAGAC 58.525 52.381 0.00 0.00 0.00 3.51
3639 3777 4.097135 CACTACGATTCATCAGACAGACCT 59.903 45.833 0.00 0.00 0.00 3.85
3714 3852 8.721479 TCCATGAAATATCCTTTCTCAGAGATT 58.279 33.333 0.00 0.00 0.00 2.40
3820 3958 0.737219 CCAGGTCATTGCAGCTAAGC 59.263 55.000 0.00 0.00 0.00 3.09
3846 3984 1.965754 AAGAAGCTAGCTCGCAGGGG 61.966 60.000 19.65 0.00 0.00 4.79
4006 4144 4.481463 GCATTTATTTGGTACGTGCTTGT 58.519 39.130 3.01 0.00 0.00 3.16
4007 4145 5.392165 GGCATTTATTTGGTACGTGCTTGTA 60.392 40.000 3.01 0.00 0.00 2.41
4008 4146 6.262601 GCATTTATTTGGTACGTGCTTGTAT 58.737 36.000 3.01 0.00 0.00 2.29
4009 4147 7.411274 GCATTTATTTGGTACGTGCTTGTATA 58.589 34.615 3.01 0.00 0.00 1.47
4082 4221 3.126073 GCTCTTTTCTTTTGCCACTTGG 58.874 45.455 0.00 0.00 38.53 3.61
4101 4240 1.398390 GGTGAAATAGACAAGGCAGCG 59.602 52.381 0.00 0.00 0.00 5.18
4200 4339 0.951558 GCGCCGGTCCAATAATTCAT 59.048 50.000 1.90 0.00 0.00 2.57
4326 4465 3.070446 AGTTCTGTTGTGATTACGTCCCA 59.930 43.478 0.00 0.00 0.00 4.37
4479 4618 4.646492 CCATTCTATGCTACCCTTTTGCTT 59.354 41.667 0.00 0.00 0.00 3.91
4599 4738 1.755179 ATGCCTTTGGGATCGTTCTG 58.245 50.000 0.00 0.00 33.58 3.02
4675 4814 5.068987 ACACACATATTGCAATGGGTATTCC 59.931 40.000 22.27 0.00 41.59 3.01
4774 4922 0.739112 CAGAGCCTTTGGTCGAGAGC 60.739 60.000 0.00 0.00 43.79 4.09
4882 5030 0.602905 GTGTCAGGACAAACCCGGAG 60.603 60.000 0.73 0.00 43.77 4.63
4933 5081 5.171147 GTCTTATCGAGACGGAGAATGAA 57.829 43.478 0.00 0.00 44.90 2.57
5002 5150 5.959618 AAAAGAAAAATGAGACCCTACGG 57.040 39.130 0.00 0.00 0.00 4.02
5003 5151 4.903045 AAGAAAAATGAGACCCTACGGA 57.097 40.909 0.00 0.00 0.00 4.69
5006 5171 0.831307 AAATGAGACCCTACGGAGGC 59.169 55.000 8.73 0.00 42.21 4.70
5008 5173 3.902086 GAGACCCTACGGAGGCGC 61.902 72.222 8.73 0.00 42.21 6.53
5025 5190 2.106332 CAGCCCCGTGGACGATAC 59.894 66.667 0.00 0.00 43.02 2.24
5031 5196 2.549349 GCCCCGTGGACGATACATTAAT 60.549 50.000 0.00 0.00 43.02 1.40
5042 5208 5.784177 ACGATACATTAATGTAGAGCCCAG 58.216 41.667 27.40 16.84 45.46 4.45
5044 5210 5.567623 CGATACATTAATGTAGAGCCCAGCT 60.568 44.000 27.40 11.98 45.46 4.24
5066 5232 3.870633 GGTGAGATACCTGAAGTTCGT 57.129 47.619 0.00 0.00 46.51 3.85
5067 5233 3.771798 GGTGAGATACCTGAAGTTCGTC 58.228 50.000 0.00 0.00 46.51 4.20
5081 5253 2.257974 TTCGTCCAGAATCGAACTCG 57.742 50.000 0.00 0.00 40.34 4.18
5089 5261 0.173708 GAATCGAACTCGGGTCAGCT 59.826 55.000 0.00 0.00 40.29 4.24
5098 5270 2.490148 CGGGTCAGCTAGGATGCGA 61.490 63.158 0.00 0.00 38.13 5.10
5106 5283 0.872021 GCTAGGATGCGACGACCTTG 60.872 60.000 12.36 11.59 35.52 3.61
5118 5295 0.518636 CGACCTTGCCACTCACATTG 59.481 55.000 0.00 0.00 0.00 2.82
5131 5308 4.150627 CACTCACATTGTACGAAGTGAAGG 59.849 45.833 19.02 12.40 45.73 3.46
5135 5312 3.739300 ACATTGTACGAAGTGAAGGAACG 59.261 43.478 0.00 0.00 45.73 3.95
5138 5315 2.884012 TGTACGAAGTGAAGGAACGGTA 59.116 45.455 0.00 0.00 45.73 4.02
5139 5316 3.507233 TGTACGAAGTGAAGGAACGGTAT 59.493 43.478 0.00 0.00 45.73 2.73
5140 5317 3.672767 ACGAAGTGAAGGAACGGTATT 57.327 42.857 0.00 0.00 42.51 1.89
5145 5322 5.451520 CGAAGTGAAGGAACGGTATTAGGAT 60.452 44.000 0.00 0.00 0.00 3.24
5146 5323 5.277857 AGTGAAGGAACGGTATTAGGATG 57.722 43.478 0.00 0.00 0.00 3.51
5147 5324 3.808174 GTGAAGGAACGGTATTAGGATGC 59.192 47.826 0.00 0.00 0.00 3.91
5152 5330 1.802553 ACGGTATTAGGATGCCCTGT 58.197 50.000 0.00 0.00 44.15 4.00
5155 5333 3.514309 ACGGTATTAGGATGCCCTGTATC 59.486 47.826 0.00 0.00 44.15 2.24
5224 5403 0.672401 GTTCTCCCGGTGAAATCGCA 60.672 55.000 0.00 0.00 0.00 5.10
5228 5407 0.535328 TCCCGGTGAAATCGCAACAA 60.535 50.000 0.00 0.00 0.00 2.83
5229 5408 0.312416 CCCGGTGAAATCGCAACAAA 59.688 50.000 0.00 0.00 0.00 2.83
5230 5409 1.067915 CCCGGTGAAATCGCAACAAAT 60.068 47.619 0.00 0.00 0.00 2.32
5385 5884 1.887344 GCCGTTCTACCCGGGTTACA 61.887 60.000 35.42 13.93 45.57 2.41
5442 5942 0.510359 CTGTTCGTCTGTTCTGCTGC 59.490 55.000 0.00 0.00 0.00 5.25
5451 5951 0.376852 TGTTCTGCTGCGTGTTTGTC 59.623 50.000 0.00 0.00 0.00 3.18
5492 5992 3.474570 AGGATGCAGGACGAGCCC 61.475 66.667 0.00 0.00 37.37 5.19
5554 6054 2.689658 TGGGTCACAGAAAGAAGGAGA 58.310 47.619 0.00 0.00 0.00 3.71
5557 6057 4.080015 TGGGTCACAGAAAGAAGGAGAAAA 60.080 41.667 0.00 0.00 0.00 2.29
5585 6085 2.497675 TCTGTTCCAGCATCTACTGACC 59.502 50.000 0.00 0.00 40.25 4.02
5589 6089 0.911769 CCAGCATCTACTGACCCCAA 59.088 55.000 0.00 0.00 40.25 4.12
5599 6099 2.938838 ACTGACCCCAACGAATTGAAA 58.061 42.857 0.00 0.00 38.15 2.69
5619 6119 2.803479 GCCATGTGCAGCTTAGGC 59.197 61.111 0.00 0.00 40.77 3.93
5622 6122 2.825836 ATGTGCAGCTTAGGCGCC 60.826 61.111 21.89 21.89 44.37 6.53
5646 6146 3.443054 TTTCGTTTACTTTCGCCATCG 57.557 42.857 0.00 0.00 0.00 3.84
5647 6147 2.350899 TCGTTTACTTTCGCCATCGA 57.649 45.000 0.00 0.00 43.89 3.59
5680 6182 1.230324 GCGAAAGGATGGATGCTACC 58.770 55.000 0.00 0.00 0.00 3.18
5682 6184 1.873903 CGAAAGGATGGATGCTACCCG 60.874 57.143 0.00 0.00 0.00 5.28
5742 6244 5.413833 GGATATGATGAGCCGTTGAATGAAT 59.586 40.000 0.00 0.00 0.00 2.57
5777 6279 2.579207 TTAGATCCGAGTTTCTGCCG 57.421 50.000 0.00 0.00 0.00 5.69
5801 6303 2.677524 TGCTGCTTGATGGGGCAC 60.678 61.111 0.00 0.00 34.57 5.01
5802 6304 2.362120 GCTGCTTGATGGGGCACT 60.362 61.111 0.00 0.00 34.57 4.40
5804 6306 2.677524 TGCTTGATGGGGCACTGC 60.678 61.111 0.00 0.00 33.23 4.40
5813 6315 0.112995 TGGGGCACTGCTGAAATTCT 59.887 50.000 0.00 0.00 0.00 2.40
5814 6316 0.529378 GGGGCACTGCTGAAATTCTG 59.471 55.000 0.00 0.00 0.00 3.02
5818 6320 2.751259 GGCACTGCTGAAATTCTGATGA 59.249 45.455 4.00 0.00 0.00 2.92
5819 6321 3.380637 GGCACTGCTGAAATTCTGATGAT 59.619 43.478 4.00 0.00 0.00 2.45
5820 6322 4.352039 GCACTGCTGAAATTCTGATGATG 58.648 43.478 4.00 0.00 0.00 3.07
5822 6324 5.392703 GCACTGCTGAAATTCTGATGATGAA 60.393 40.000 4.00 0.00 0.00 2.57
5823 6325 6.680625 GCACTGCTGAAATTCTGATGATGAAT 60.681 38.462 4.00 0.00 35.88 2.57
5824 6326 7.258441 CACTGCTGAAATTCTGATGATGAATT 58.742 34.615 4.00 0.00 43.44 2.17
5826 6328 8.963725 ACTGCTGAAATTCTGATGATGAATTAA 58.036 29.630 4.00 0.00 41.54 1.40
5827 6329 9.797556 CTGCTGAAATTCTGATGATGAATTAAA 57.202 29.630 4.00 0.00 41.54 1.52
5867 6369 3.624326 CTCAAAAGCAACGAATGGACA 57.376 42.857 0.00 0.00 0.00 4.02
5868 6370 3.963665 CTCAAAAGCAACGAATGGACAA 58.036 40.909 0.00 0.00 0.00 3.18
5869 6371 4.549458 CTCAAAAGCAACGAATGGACAAT 58.451 39.130 0.00 0.00 0.00 2.71
5870 6372 4.297510 TCAAAAGCAACGAATGGACAATG 58.702 39.130 0.00 0.00 0.00 2.82
5891 6393 2.588034 GTTGCTATCCGCCGTCCC 60.588 66.667 0.00 0.00 38.05 4.46
5922 6428 1.301165 GCAAGTTGGCAAGCAAGGG 60.301 57.895 0.00 0.00 0.00 3.95
5923 6429 1.368579 CAAGTTGGCAAGCAAGGGG 59.631 57.895 0.00 0.00 0.00 4.79
5925 6431 0.829182 AAGTTGGCAAGCAAGGGGAG 60.829 55.000 0.00 0.00 0.00 4.30
5943 6449 3.204526 GGAGCCATCATTCTGTTGAGAG 58.795 50.000 0.00 0.00 0.00 3.20
5945 6451 2.092538 AGCCATCATTCTGTTGAGAGGG 60.093 50.000 0.00 0.00 0.00 4.30
5949 6455 5.198965 CCATCATTCTGTTGAGAGGGAAAT 58.801 41.667 0.00 0.00 0.00 2.17
5957 6463 6.546484 TCTGTTGAGAGGGAAATCTGAAAAT 58.454 36.000 0.00 0.00 0.00 1.82
5958 6464 7.006509 TCTGTTGAGAGGGAAATCTGAAAATT 58.993 34.615 0.00 0.00 0.00 1.82
5959 6465 7.506938 TCTGTTGAGAGGGAAATCTGAAAATTT 59.493 33.333 0.00 0.00 0.00 1.82
5960 6466 8.704849 TGTTGAGAGGGAAATCTGAAAATTTA 57.295 30.769 0.00 0.00 0.00 1.40
5961 6467 8.796475 TGTTGAGAGGGAAATCTGAAAATTTAG 58.204 33.333 0.00 0.00 0.00 1.85
5962 6468 7.944729 TGAGAGGGAAATCTGAAAATTTAGG 57.055 36.000 0.00 0.00 0.00 2.69
5963 6469 6.378280 TGAGAGGGAAATCTGAAAATTTAGGC 59.622 38.462 0.00 0.00 0.00 3.93
5964 6470 5.358160 AGAGGGAAATCTGAAAATTTAGGCG 59.642 40.000 0.00 0.00 0.00 5.52
5965 6471 4.402474 AGGGAAATCTGAAAATTTAGGCGG 59.598 41.667 0.00 0.00 0.00 6.13
5966 6472 4.112634 GGAAATCTGAAAATTTAGGCGGC 58.887 43.478 0.00 0.00 0.00 6.53
5967 6473 3.801114 AATCTGAAAATTTAGGCGGCC 57.199 42.857 12.11 12.11 0.00 6.13
5968 6474 2.208132 TCTGAAAATTTAGGCGGCCA 57.792 45.000 23.09 4.27 0.00 5.36
5969 6475 2.520069 TCTGAAAATTTAGGCGGCCAA 58.480 42.857 23.09 8.14 0.00 4.52
5970 6476 2.491693 TCTGAAAATTTAGGCGGCCAAG 59.508 45.455 23.09 4.34 0.00 3.61
5971 6477 1.067213 TGAAAATTTAGGCGGCCAAGC 60.067 47.619 23.09 0.00 0.00 4.01
5972 6478 1.204704 GAAAATTTAGGCGGCCAAGCT 59.795 47.619 23.09 2.24 37.29 3.74
5973 6479 0.532115 AAATTTAGGCGGCCAAGCTG 59.468 50.000 23.09 0.00 38.08 4.24
5974 6480 0.611896 AATTTAGGCGGCCAAGCTGT 60.612 50.000 23.09 0.97 37.24 4.40
5975 6481 0.611896 ATTTAGGCGGCCAAGCTGTT 60.612 50.000 23.09 0.13 37.24 3.16
5976 6482 1.241315 TTTAGGCGGCCAAGCTGTTC 61.241 55.000 23.09 0.00 37.24 3.18
5977 6483 3.622060 TAGGCGGCCAAGCTGTTCC 62.622 63.158 23.09 0.00 37.24 3.62
5980 6486 2.361610 CGGCCAAGCTGTTCCCAT 60.362 61.111 2.24 0.00 0.00 4.00
5981 6487 1.077787 CGGCCAAGCTGTTCCCATA 60.078 57.895 2.24 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
238 247 2.936919 TTTGCGGCAGGATATGATCT 57.063 45.000 1.67 0.00 0.00 2.75
373 395 5.656416 ACTCTTAGAGCAACTCTAGCAGATT 59.344 40.000 9.44 5.29 42.92 2.40
381 403 6.210385 TCTGATGAAACTCTTAGAGCAACTCT 59.790 38.462 9.44 2.23 43.83 3.24
472 495 3.982475 TGCAATTTTGGTTACATCGCAA 58.018 36.364 0.00 0.00 0.00 4.85
485 508 4.952460 AGCTGACATGAGTTTGCAATTTT 58.048 34.783 0.00 0.00 0.00 1.82
631 657 5.667466 TCCGTCTTGAGGTAAATTATGGTC 58.333 41.667 0.00 0.00 0.00 4.02
804 860 4.144727 GAGCGAGGGAGGGAGGGA 62.145 72.222 0.00 0.00 0.00 4.20
807 863 4.150454 AGGGAGCGAGGGAGGGAG 62.150 72.222 0.00 0.00 0.00 4.30
920 979 1.751927 GCCCATTGCCAGTGAGGAG 60.752 63.158 0.00 0.00 41.22 3.69
921 980 2.356278 GCCCATTGCCAGTGAGGA 59.644 61.111 0.00 0.00 41.22 3.71
922 981 3.136123 CGCCCATTGCCAGTGAGG 61.136 66.667 0.00 0.00 41.84 3.86
938 998 2.461110 GGCGAATATATGGCGGGCG 61.461 63.158 9.45 0.00 0.00 6.13
1239 1299 1.448540 CGGAGCGTTCTCTGCCATT 60.449 57.895 0.00 0.00 38.73 3.16
1398 1458 2.960129 CCGCCGCGAAGTATGTCC 60.960 66.667 15.93 0.00 0.00 4.02
1532 1592 0.400594 ACAAGAGTGGGTGGTTAGGC 59.599 55.000 0.00 0.00 0.00 3.93
1537 1601 4.202212 GCAATTTAAACAAGAGTGGGTGGT 60.202 41.667 0.00 0.00 0.00 4.16
1538 1602 4.039124 AGCAATTTAAACAAGAGTGGGTGG 59.961 41.667 0.00 0.00 0.00 4.61
1539 1603 5.010012 AGAGCAATTTAAACAAGAGTGGGTG 59.990 40.000 0.00 0.00 0.00 4.61
1590 1655 5.612725 TTTTTGGGAACTTCAATTCAGCT 57.387 34.783 0.00 0.00 0.00 4.24
1602 1667 5.230182 CAACTAGGAAGCATTTTTGGGAAC 58.770 41.667 0.00 0.00 0.00 3.62
1671 1736 8.855110 CAAATCTATCAGTCTATCACCTACTGT 58.145 37.037 0.00 0.00 41.12 3.55
1672 1737 8.303156 CCAAATCTATCAGTCTATCACCTACTG 58.697 40.741 0.00 0.00 41.58 2.74
1673 1738 8.228206 TCCAAATCTATCAGTCTATCACCTACT 58.772 37.037 0.00 0.00 0.00 2.57
1674 1739 8.410673 TCCAAATCTATCAGTCTATCACCTAC 57.589 38.462 0.00 0.00 0.00 3.18
1708 1773 8.627208 ACTAAGAATCAACTTCAATGTGACAT 57.373 30.769 0.00 0.00 36.24 3.06
1732 1797 4.764679 TTAGCACATGGATCACACAAAC 57.235 40.909 0.00 0.00 0.00 2.93
1736 1801 7.088589 AGTTTAATTAGCACATGGATCACAC 57.911 36.000 0.00 0.00 0.00 3.82
1795 1860 4.825422 TCTAACAAGAAGAGGACAGCATG 58.175 43.478 0.00 0.00 46.00 4.06
1820 1885 3.932822 TGCATGAATACACCTAACACGT 58.067 40.909 0.00 0.00 0.00 4.49
1821 1886 6.646653 AGATATGCATGAATACACCTAACACG 59.353 38.462 10.16 0.00 0.00 4.49
1843 1908 7.498239 GCACATATATGGAAGCATATGTCAGAT 59.502 37.037 16.96 4.24 43.28 2.90
1851 1916 4.222810 AGTCGGCACATATATGGAAGCATA 59.777 41.667 16.96 6.97 0.00 3.14
1873 1938 0.675633 CCAACAGGACCAAAAGCCAG 59.324 55.000 0.00 0.00 0.00 4.85
1881 1946 4.956700 TGAACAAAATTACCAACAGGACCA 59.043 37.500 0.00 0.00 0.00 4.02
1882 1947 5.523438 TGAACAAAATTACCAACAGGACC 57.477 39.130 0.00 0.00 0.00 4.46
1894 1959 8.421249 TTCAAGGGACATCTATGAACAAAATT 57.579 30.769 0.00 0.00 0.00 1.82
1896 1961 6.434028 CCTTCAAGGGACATCTATGAACAAAA 59.566 38.462 0.00 0.00 0.00 2.44
1901 1980 4.141620 GCTCCTTCAAGGGACATCTATGAA 60.142 45.833 2.75 0.00 35.59 2.57
1903 1982 3.135348 TGCTCCTTCAAGGGACATCTATG 59.865 47.826 2.75 0.00 35.59 2.23
1921 2000 3.561310 TGATTCTAAACGCCATGATGCTC 59.439 43.478 0.00 0.00 0.00 4.26
1933 2012 8.547967 TCTCTACAATGTTGGTGATTCTAAAC 57.452 34.615 0.00 0.00 0.00 2.01
2011 2130 9.906660 TTATGCAACCTTGACTTTAGTAATTTG 57.093 29.630 0.00 0.00 0.00 2.32
2090 2214 4.351192 ACGCTTGAAACAAGAATGAACAC 58.649 39.130 14.44 0.00 0.00 3.32
2120 2244 7.065563 CACTGCATTACTAGAATTTCTCAGCTT 59.934 37.037 1.27 0.00 0.00 3.74
2123 2247 6.538021 AGCACTGCATTACTAGAATTTCTCAG 59.462 38.462 1.27 5.03 0.00 3.35
2124 2248 6.409704 AGCACTGCATTACTAGAATTTCTCA 58.590 36.000 1.27 0.00 0.00 3.27
2125 2249 6.760770 AGAGCACTGCATTACTAGAATTTCTC 59.239 38.462 1.27 0.00 0.00 2.87
2134 2258 3.099905 AGGACAGAGCACTGCATTACTA 58.900 45.455 11.37 0.00 46.95 1.82
2237 2363 4.196971 ACTTTACAAAGTGGACAGTGACC 58.803 43.478 6.56 4.52 46.80 4.02
2256 2382 8.090788 TGAAGTAGGAGCCAAAATCTATACTT 57.909 34.615 0.00 0.00 34.65 2.24
2320 2446 6.592607 TCCCACTAATAACGCAAAAGAAGTAG 59.407 38.462 0.00 0.00 0.00 2.57
2414 2540 8.677148 TGTCTTTGTAGTATTCAGCTTTCTTT 57.323 30.769 0.00 0.00 0.00 2.52
2481 2607 9.406828 GAAAAATGAGTGTAGGAAAATGTTACC 57.593 33.333 0.00 0.00 0.00 2.85
2511 2637 6.836577 CTTGTAAAGCAGCTACTTATCCTC 57.163 41.667 0.00 0.00 36.98 3.71
2573 2699 8.975410 TCTGAAATAGAACAAAATGAGCATTG 57.025 30.769 0.00 0.00 30.84 2.82
2574 2700 9.798994 GATCTGAAATAGAACAAAATGAGCATT 57.201 29.630 0.00 0.00 39.30 3.56
2578 2704 9.770503 CACTGATCTGAAATAGAACAAAATGAG 57.229 33.333 6.60 0.00 37.69 2.90
2589 2716 5.105187 TGAGGGTCACACTGATCTGAAATAG 60.105 44.000 6.60 0.00 0.00 1.73
2600 2727 2.744202 GCATACTTTGAGGGTCACACTG 59.256 50.000 0.00 0.00 0.00 3.66
2633 2760 5.015515 TCATGGATAATGACAACCTTTGCA 58.984 37.500 0.00 0.00 40.50 4.08
2731 2860 4.823989 ACAAATGCTCCATTAGGATAGCAC 59.176 41.667 0.00 0.00 44.79 4.40
2947 3085 4.082300 ACTCAGATCAAGTGACACTGCTAG 60.082 45.833 9.33 3.29 34.29 3.42
2951 3089 3.993081 GGAACTCAGATCAAGTGACACTG 59.007 47.826 9.33 3.88 35.01 3.66
2967 3105 6.151312 TGTCAGTATCTAGTGTCTTGGAACTC 59.849 42.308 0.00 0.00 0.00 3.01
2976 3114 4.201930 CGGACCTTGTCAGTATCTAGTGTC 60.202 50.000 0.00 0.00 33.68 3.67
3090 3228 1.295792 TTGACGGTGTGAAGTCTTGC 58.704 50.000 0.00 0.00 38.16 4.01
3173 3311 7.596248 AGTTGCAACTTTATCATTGTGCTTTAG 59.404 33.333 26.36 0.00 35.21 1.85
3175 3313 6.282930 AGTTGCAACTTTATCATTGTGCTTT 58.717 32.000 26.36 0.00 35.21 3.51
3185 3323 8.669243 AGAACATAAGCTAGTTGCAACTTTATC 58.331 33.333 35.20 20.38 45.94 1.75
3207 3345 8.816144 TCACATTTTAACATTTCAGCAAAGAAC 58.184 29.630 0.00 0.00 0.00 3.01
3209 3347 7.978414 TGTCACATTTTAACATTTCAGCAAAGA 59.022 29.630 0.00 0.00 0.00 2.52
3210 3348 8.057742 GTGTCACATTTTAACATTTCAGCAAAG 58.942 33.333 0.00 0.00 0.00 2.77
3216 3354 6.567959 TGCAGTGTCACATTTTAACATTTCA 58.432 32.000 5.62 0.00 0.00 2.69
3231 3369 7.161404 AGTGTTCTTATCTTTATGCAGTGTCA 58.839 34.615 0.00 0.00 0.00 3.58
3235 3373 9.539825 CAGATAGTGTTCTTATCTTTATGCAGT 57.460 33.333 0.00 0.00 0.00 4.40
3236 3374 8.494347 GCAGATAGTGTTCTTATCTTTATGCAG 58.506 37.037 0.00 0.00 31.51 4.41
3237 3375 7.442364 GGCAGATAGTGTTCTTATCTTTATGCA 59.558 37.037 0.00 0.00 32.30 3.96
3238 3376 7.095017 GGGCAGATAGTGTTCTTATCTTTATGC 60.095 40.741 0.00 0.00 30.82 3.14
3239 3377 8.153550 AGGGCAGATAGTGTTCTTATCTTTATG 58.846 37.037 0.00 0.00 0.00 1.90
3240 3378 8.268878 AGGGCAGATAGTGTTCTTATCTTTAT 57.731 34.615 0.00 0.00 0.00 1.40
3241 3379 7.676683 AGGGCAGATAGTGTTCTTATCTTTA 57.323 36.000 0.00 0.00 0.00 1.85
3242 3380 6.567602 AGGGCAGATAGTGTTCTTATCTTT 57.432 37.500 0.00 0.00 0.00 2.52
3243 3381 7.069986 TCTAGGGCAGATAGTGTTCTTATCTT 58.930 38.462 0.00 0.00 0.00 2.40
3244 3382 6.615617 TCTAGGGCAGATAGTGTTCTTATCT 58.384 40.000 0.00 0.00 0.00 1.98
3245 3383 6.902771 TCTAGGGCAGATAGTGTTCTTATC 57.097 41.667 0.00 0.00 0.00 1.75
3246 3384 6.268847 CCTTCTAGGGCAGATAGTGTTCTTAT 59.731 42.308 0.00 0.00 31.77 1.73
3247 3385 5.598830 CCTTCTAGGGCAGATAGTGTTCTTA 59.401 44.000 0.00 0.00 31.77 2.10
3248 3386 4.407296 CCTTCTAGGGCAGATAGTGTTCTT 59.593 45.833 0.00 0.00 31.77 2.52
3249 3387 3.964031 CCTTCTAGGGCAGATAGTGTTCT 59.036 47.826 0.00 0.00 31.77 3.01
3250 3388 4.329462 CCTTCTAGGGCAGATAGTGTTC 57.671 50.000 0.00 0.00 31.77 3.18
3263 3401 5.316987 ACAACATGAACTTTCCCTTCTAGG 58.683 41.667 0.00 0.00 34.30 3.02
3264 3402 7.162082 AGTACAACATGAACTTTCCCTTCTAG 58.838 38.462 0.00 0.00 0.00 2.43
3265 3403 7.074653 AGTACAACATGAACTTTCCCTTCTA 57.925 36.000 0.00 0.00 0.00 2.10
3266 3404 5.941788 AGTACAACATGAACTTTCCCTTCT 58.058 37.500 0.00 0.00 0.00 2.85
3267 3405 7.739498 TTAGTACAACATGAACTTTCCCTTC 57.261 36.000 0.00 0.00 0.00 3.46
3268 3406 7.176690 CCATTAGTACAACATGAACTTTCCCTT 59.823 37.037 0.00 0.00 0.00 3.95
3269 3407 6.659242 CCATTAGTACAACATGAACTTTCCCT 59.341 38.462 0.00 0.00 0.00 4.20
3270 3408 6.433093 ACCATTAGTACAACATGAACTTTCCC 59.567 38.462 0.00 0.00 0.00 3.97
3271 3409 7.305474 CACCATTAGTACAACATGAACTTTCC 58.695 38.462 0.00 0.00 0.00 3.13
3272 3410 7.040686 ACCACCATTAGTACAACATGAACTTTC 60.041 37.037 0.00 0.00 0.00 2.62
3273 3411 6.775629 ACCACCATTAGTACAACATGAACTTT 59.224 34.615 0.00 0.00 0.00 2.66
3274 3412 6.303839 ACCACCATTAGTACAACATGAACTT 58.696 36.000 0.00 0.00 0.00 2.66
3275 3413 5.876357 ACCACCATTAGTACAACATGAACT 58.124 37.500 0.00 0.00 0.00 3.01
3276 3414 7.173562 TGTTACCACCATTAGTACAACATGAAC 59.826 37.037 0.00 0.00 0.00 3.18
3277 3415 7.173562 GTGTTACCACCATTAGTACAACATGAA 59.826 37.037 0.00 0.00 35.44 2.57
3278 3416 6.651643 GTGTTACCACCATTAGTACAACATGA 59.348 38.462 0.00 0.00 35.44 3.07
3279 3417 6.428465 TGTGTTACCACCATTAGTACAACATG 59.572 38.462 0.00 0.00 41.09 3.21
3280 3418 6.428771 GTGTGTTACCACCATTAGTACAACAT 59.571 38.462 0.00 0.00 41.09 2.71
3281 3419 5.759273 GTGTGTTACCACCATTAGTACAACA 59.241 40.000 0.00 0.00 41.09 3.33
3282 3420 5.993441 AGTGTGTTACCACCATTAGTACAAC 59.007 40.000 0.00 0.00 41.09 3.32
3283 3421 6.177310 AGTGTGTTACCACCATTAGTACAA 57.823 37.500 0.00 0.00 41.09 2.41
3284 3422 5.811796 AGTGTGTTACCACCATTAGTACA 57.188 39.130 0.00 0.00 41.09 2.90
3285 3423 6.815142 CCTAAGTGTGTTACCACCATTAGTAC 59.185 42.308 9.42 0.00 41.09 2.73
3286 3424 6.497954 ACCTAAGTGTGTTACCACCATTAGTA 59.502 38.462 9.42 0.00 41.09 1.82
3287 3425 5.308759 ACCTAAGTGTGTTACCACCATTAGT 59.691 40.000 9.42 0.00 41.09 2.24
3288 3426 5.801380 ACCTAAGTGTGTTACCACCATTAG 58.199 41.667 5.32 5.32 41.09 1.73
3289 3427 5.829062 ACCTAAGTGTGTTACCACCATTA 57.171 39.130 0.00 0.00 41.09 1.90
3290 3428 4.717279 ACCTAAGTGTGTTACCACCATT 57.283 40.909 0.00 0.00 41.09 3.16
3291 3429 4.717279 AACCTAAGTGTGTTACCACCAT 57.283 40.909 0.00 0.00 41.09 3.55
3292 3430 4.080469 TCAAACCTAAGTGTGTTACCACCA 60.080 41.667 0.00 0.00 41.09 4.17
3293 3431 4.453751 TCAAACCTAAGTGTGTTACCACC 58.546 43.478 0.00 0.00 41.09 4.61
3294 3432 5.048991 CCATCAAACCTAAGTGTGTTACCAC 60.049 44.000 0.00 0.00 42.19 4.16
3295 3433 5.067273 CCATCAAACCTAAGTGTGTTACCA 58.933 41.667 0.00 0.00 32.53 3.25
3296 3434 5.067954 ACCATCAAACCTAAGTGTGTTACC 58.932 41.667 0.00 0.00 32.53 2.85
3297 3435 6.261381 TCAACCATCAAACCTAAGTGTGTTAC 59.739 38.462 0.00 0.00 32.53 2.50
3298 3436 6.358178 TCAACCATCAAACCTAAGTGTGTTA 58.642 36.000 0.00 0.00 32.53 2.41
3299 3437 5.197451 TCAACCATCAAACCTAAGTGTGTT 58.803 37.500 0.00 0.00 32.53 3.32
3300 3438 4.787551 TCAACCATCAAACCTAAGTGTGT 58.212 39.130 0.00 0.00 32.53 3.72
3301 3439 5.241506 ACATCAACCATCAAACCTAAGTGTG 59.758 40.000 0.00 0.00 31.84 3.82
3302 3440 5.385198 ACATCAACCATCAAACCTAAGTGT 58.615 37.500 0.00 0.00 0.00 3.55
3303 3441 5.473162 TGACATCAACCATCAAACCTAAGTG 59.527 40.000 0.00 0.00 0.00 3.16
3304 3442 5.473504 GTGACATCAACCATCAAACCTAAGT 59.526 40.000 0.00 0.00 0.00 2.24
3305 3443 5.473162 TGTGACATCAACCATCAAACCTAAG 59.527 40.000 0.00 0.00 0.00 2.18
3306 3444 5.380900 TGTGACATCAACCATCAAACCTAA 58.619 37.500 0.00 0.00 0.00 2.69
3307 3445 4.979335 TGTGACATCAACCATCAAACCTA 58.021 39.130 0.00 0.00 0.00 3.08
3308 3446 3.831323 TGTGACATCAACCATCAAACCT 58.169 40.909 0.00 0.00 0.00 3.50
3309 3447 4.582701 TTGTGACATCAACCATCAAACC 57.417 40.909 0.00 0.00 0.00 3.27
3310 3448 6.215121 TCATTTGTGACATCAACCATCAAAC 58.785 36.000 0.00 0.00 0.00 2.93
3311 3449 6.402456 TCATTTGTGACATCAACCATCAAA 57.598 33.333 0.00 0.00 0.00 2.69
3312 3450 6.264970 TCTTCATTTGTGACATCAACCATCAA 59.735 34.615 0.00 0.00 0.00 2.57
3313 3451 5.769162 TCTTCATTTGTGACATCAACCATCA 59.231 36.000 0.00 0.00 0.00 3.07
3314 3452 6.258230 TCTTCATTTGTGACATCAACCATC 57.742 37.500 0.00 0.00 0.00 3.51
3315 3453 6.653526 TTCTTCATTTGTGACATCAACCAT 57.346 33.333 0.00 0.00 0.00 3.55
3316 3454 6.127507 TGTTTCTTCATTTGTGACATCAACCA 60.128 34.615 0.00 0.00 0.00 3.67
3317 3455 6.272318 TGTTTCTTCATTTGTGACATCAACC 58.728 36.000 0.00 0.00 0.00 3.77
3318 3456 7.436080 ACATGTTTCTTCATTTGTGACATCAAC 59.564 33.333 0.00 0.00 0.00 3.18
3319 3457 7.490840 ACATGTTTCTTCATTTGTGACATCAA 58.509 30.769 0.00 0.00 0.00 2.57
3320 3458 7.041635 ACATGTTTCTTCATTTGTGACATCA 57.958 32.000 0.00 0.00 0.00 3.07
3321 3459 8.292448 ACTACATGTTTCTTCATTTGTGACATC 58.708 33.333 2.30 0.00 0.00 3.06
3322 3460 8.169977 ACTACATGTTTCTTCATTTGTGACAT 57.830 30.769 2.30 0.00 0.00 3.06
3323 3461 7.566760 ACTACATGTTTCTTCATTTGTGACA 57.433 32.000 2.30 0.00 0.00 3.58
3324 3462 7.591426 GGAACTACATGTTTCTTCATTTGTGAC 59.409 37.037 2.30 0.00 39.30 3.67
3325 3463 7.502226 AGGAACTACATGTTTCTTCATTTGTGA 59.498 33.333 2.30 0.00 41.55 3.58
3326 3464 7.651808 AGGAACTACATGTTTCTTCATTTGTG 58.348 34.615 2.30 0.00 41.55 3.33
3327 3465 7.823745 AGGAACTACATGTTTCTTCATTTGT 57.176 32.000 2.30 0.00 41.55 2.83
3335 3473 4.828829 CGGGTAAGGAACTACATGTTTCT 58.171 43.478 2.30 0.00 46.01 2.52
3336 3474 3.373130 GCGGGTAAGGAACTACATGTTTC 59.627 47.826 2.30 2.24 38.49 2.78
3337 3475 3.244630 TGCGGGTAAGGAACTACATGTTT 60.245 43.478 2.30 0.00 38.49 2.83
3338 3476 2.303600 TGCGGGTAAGGAACTACATGTT 59.696 45.455 2.30 0.00 38.49 2.71
3339 3477 1.903860 TGCGGGTAAGGAACTACATGT 59.096 47.619 2.69 2.69 38.49 3.21
3340 3478 2.684001 TGCGGGTAAGGAACTACATG 57.316 50.000 0.00 0.00 38.49 3.21
3341 3479 3.454812 AGAATGCGGGTAAGGAACTACAT 59.545 43.478 0.00 0.00 38.49 2.29
3342 3480 2.835764 AGAATGCGGGTAAGGAACTACA 59.164 45.455 0.00 0.00 38.49 2.74
3343 3481 3.455327 GAGAATGCGGGTAAGGAACTAC 58.545 50.000 0.00 0.00 38.49 2.73
3344 3482 2.433239 GGAGAATGCGGGTAAGGAACTA 59.567 50.000 0.00 0.00 38.49 2.24
3346 3484 1.664873 GGAGAATGCGGGTAAGGAAC 58.335 55.000 0.00 0.00 0.00 3.62
3347 3485 0.544697 GGGAGAATGCGGGTAAGGAA 59.455 55.000 0.00 0.00 0.00 3.36
3348 3486 1.342672 GGGGAGAATGCGGGTAAGGA 61.343 60.000 0.00 0.00 0.00 3.36
3349 3487 1.148498 GGGGAGAATGCGGGTAAGG 59.852 63.158 0.00 0.00 0.00 2.69
3350 3488 1.148498 GGGGGAGAATGCGGGTAAG 59.852 63.158 0.00 0.00 0.00 2.34
3351 3489 3.326900 GGGGGAGAATGCGGGTAA 58.673 61.111 0.00 0.00 0.00 2.85
3365 3503 2.092914 GGTCAGAACTAACATGAGGGGG 60.093 54.545 0.00 0.00 0.00 5.40
3366 3504 2.840651 AGGTCAGAACTAACATGAGGGG 59.159 50.000 0.00 0.00 0.00 4.79
3367 3505 4.712337 ACTAGGTCAGAACTAACATGAGGG 59.288 45.833 0.00 0.00 0.00 4.30
3368 3506 5.923733 ACTAGGTCAGAACTAACATGAGG 57.076 43.478 0.00 0.00 0.00 3.86
3369 3507 7.633193 ACTACTAGGTCAGAACTAACATGAG 57.367 40.000 0.00 0.00 0.00 2.90
3370 3508 8.327271 ACTACTACTAGGTCAGAACTAACATGA 58.673 37.037 0.00 0.00 0.00 3.07
3371 3509 8.399425 CACTACTACTAGGTCAGAACTAACATG 58.601 40.741 0.00 0.00 0.00 3.21
3372 3510 7.067251 GCACTACTACTAGGTCAGAACTAACAT 59.933 40.741 0.00 0.00 0.00 2.71
3373 3511 6.373774 GCACTACTACTAGGTCAGAACTAACA 59.626 42.308 0.00 0.00 0.00 2.41
3374 3512 6.598850 AGCACTACTACTAGGTCAGAACTAAC 59.401 42.308 0.00 0.00 0.00 2.34
3375 3513 6.719301 AGCACTACTACTAGGTCAGAACTAA 58.281 40.000 0.00 0.00 0.00 2.24
3376 3514 6.310764 AGCACTACTACTAGGTCAGAACTA 57.689 41.667 0.00 0.00 0.00 2.24
3377 3515 5.182169 AGCACTACTACTAGGTCAGAACT 57.818 43.478 0.00 0.00 0.00 3.01
3378 3516 5.900865 AAGCACTACTACTAGGTCAGAAC 57.099 43.478 0.00 0.00 0.00 3.01
3379 3517 8.413309 TTTTAAGCACTACTACTAGGTCAGAA 57.587 34.615 0.00 0.00 0.00 3.02
3380 3518 7.886970 TCTTTTAAGCACTACTACTAGGTCAGA 59.113 37.037 0.00 0.00 0.00 3.27
3381 3519 8.053026 TCTTTTAAGCACTACTACTAGGTCAG 57.947 38.462 0.00 0.00 0.00 3.51
3382 3520 8.591114 ATCTTTTAAGCACTACTACTAGGTCA 57.409 34.615 0.00 0.00 0.00 4.02
3384 3522 9.917887 TCTATCTTTTAAGCACTACTACTAGGT 57.082 33.333 0.00 0.00 0.00 3.08
3423 3561 9.565090 TGCATGAATGAGCTACTAGAATTAATT 57.435 29.630 0.00 0.00 0.00 1.40
3424 3562 9.217278 CTGCATGAATGAGCTACTAGAATTAAT 57.783 33.333 0.00 0.00 0.00 1.40
3425 3563 8.424133 TCTGCATGAATGAGCTACTAGAATTAA 58.576 33.333 0.00 0.00 0.00 1.40
3426 3564 7.955918 TCTGCATGAATGAGCTACTAGAATTA 58.044 34.615 0.00 0.00 0.00 1.40
3495 3633 7.949690 AACTTTTGGAAGGTAAAACTACAGT 57.050 32.000 0.00 0.00 37.19 3.55
3558 3696 0.249120 TCAGGGGAACATGCGTAGTG 59.751 55.000 0.00 0.00 43.15 2.74
3633 3771 2.027745 ACCAGCACATAGAACAGGTCTG 60.028 50.000 0.00 0.00 37.12 3.51
3639 3777 2.503331 CCACAACCAGCACATAGAACA 58.497 47.619 0.00 0.00 0.00 3.18
3714 3852 4.903054 AGAAGTCAGATGTTGCAGATTGA 58.097 39.130 0.00 0.00 0.00 2.57
3820 3958 1.849219 CGAGCTAGCTTCTTTACGCAG 59.151 52.381 20.42 0.00 0.00 5.18
4082 4221 1.398390 CCGCTGCCTTGTCTATTTCAC 59.602 52.381 0.00 0.00 0.00 3.18
4101 4240 1.377333 GTGCCACTCCAGTAAGCCC 60.377 63.158 0.00 0.00 0.00 5.19
4200 4339 2.749839 CTTGGGCGCAAATCCCGA 60.750 61.111 17.59 0.00 46.92 5.14
4224 4363 3.698029 ACAAAGTCATGTGTCAACAGC 57.302 42.857 0.00 0.00 40.39 4.40
4345 4484 4.619160 GCCTTCCATTTAGCAAGACCAAAG 60.619 45.833 0.00 0.00 0.00 2.77
4479 4618 4.019411 TCCTGGCATTGTCAGAAATACAGA 60.019 41.667 19.67 3.63 37.47 3.41
4599 4738 1.603172 CGACCCGATATCAGCTGGAAC 60.603 57.143 15.13 0.20 0.00 3.62
4774 4922 1.725641 TTAGATCGTGCAGTGCAAGG 58.274 50.000 27.22 18.86 41.47 3.61
4882 5030 2.592861 CCCATAGAAGGCCGCTGC 60.593 66.667 10.95 0.00 0.00 5.25
4924 5072 6.774656 ACAAATCCCTGATATGTTCATTCTCC 59.225 38.462 0.00 0.00 32.72 3.71
5008 5173 2.028125 ATGTATCGTCCACGGGGCTG 62.028 60.000 0.00 0.00 40.29 4.85
5021 5186 5.641209 CAGCTGGGCTCTACATTAATGTATC 59.359 44.000 24.81 17.13 38.57 2.24
5025 5190 3.144506 CCAGCTGGGCTCTACATTAATG 58.855 50.000 26.14 14.01 36.40 1.90
5064 5230 0.525668 CCCGAGTTCGATTCTGGACG 60.526 60.000 2.59 0.00 43.02 4.79
5066 5232 0.815734 GACCCGAGTTCGATTCTGGA 59.184 55.000 12.71 0.00 43.02 3.86
5067 5233 0.530744 TGACCCGAGTTCGATTCTGG 59.469 55.000 2.59 6.42 43.02 3.86
5079 5251 2.490148 CGCATCCTAGCTGACCCGA 61.490 63.158 0.00 0.00 0.00 5.14
5081 5253 1.068250 GTCGCATCCTAGCTGACCC 59.932 63.158 0.00 0.00 34.40 4.46
5089 5261 1.141019 GCAAGGTCGTCGCATCCTA 59.859 57.895 4.44 0.00 0.00 2.94
5098 5270 0.108585 AATGTGAGTGGCAAGGTCGT 59.891 50.000 0.00 0.00 0.00 4.34
5106 5283 2.157668 CACTTCGTACAATGTGAGTGGC 59.842 50.000 0.00 0.00 32.72 5.01
5118 5295 2.428888 ACCGTTCCTTCACTTCGTAC 57.571 50.000 0.00 0.00 0.00 3.67
5131 5308 2.104281 ACAGGGCATCCTAATACCGTTC 59.896 50.000 0.00 0.00 42.67 3.95
5135 5312 4.489306 GGATACAGGGCATCCTAATACC 57.511 50.000 0.00 0.00 42.67 2.73
5145 5322 3.494924 CGATGAAATCAGGATACAGGGCA 60.495 47.826 0.00 0.00 45.97 5.36
5146 5323 3.070018 CGATGAAATCAGGATACAGGGC 58.930 50.000 0.00 0.00 45.97 5.19
5147 5324 3.070018 GCGATGAAATCAGGATACAGGG 58.930 50.000 0.00 0.00 45.97 4.45
5152 5330 5.282055 ACTTCAGCGATGAAATCAGGATA 57.718 39.130 17.83 0.00 45.97 2.59
5155 5333 4.394300 AGAAACTTCAGCGATGAAATCAGG 59.606 41.667 17.83 7.76 45.97 3.86
5228 5407 4.040755 AGGGGAGCAGACAGTAACATATT 58.959 43.478 0.00 0.00 0.00 1.28
5229 5408 3.389329 CAGGGGAGCAGACAGTAACATAT 59.611 47.826 0.00 0.00 0.00 1.78
5230 5409 2.766263 CAGGGGAGCAGACAGTAACATA 59.234 50.000 0.00 0.00 0.00 2.29
5346 5845 9.944663 GAACGGCATTTCATTTACAAAGATATA 57.055 29.630 0.00 0.00 0.00 0.86
5347 5846 8.686334 AGAACGGCATTTCATTTACAAAGATAT 58.314 29.630 0.00 0.00 0.00 1.63
5385 5884 4.202253 GCCAGGGAACAAAAACTCAGAAAT 60.202 41.667 0.00 0.00 0.00 2.17
5442 5942 1.326245 TCTTCAACAGCGACAAACACG 59.674 47.619 0.00 0.00 0.00 4.49
5451 5951 4.260132 GCATATCAAGACTCTTCAACAGCG 60.260 45.833 0.00 0.00 0.00 5.18
5585 6085 1.339610 TGGCAGTTTCAATTCGTTGGG 59.660 47.619 0.00 0.00 0.00 4.12
5589 6089 2.607771 GCACATGGCAGTTTCAATTCGT 60.608 45.455 0.00 0.00 43.97 3.85
5619 6119 2.962191 CGAAAGTAAACGAAAACAGGCG 59.038 45.455 0.00 0.00 0.00 5.52
5622 6122 3.942739 TGGCGAAAGTAAACGAAAACAG 58.057 40.909 0.00 0.00 0.00 3.16
5654 6155 2.577606 TCCATCCTTTCGCCTGAAAA 57.422 45.000 0.00 0.00 43.21 2.29
5680 6182 2.076863 GTCTGTCCACATCTTTTCCGG 58.923 52.381 0.00 0.00 0.00 5.14
5682 6184 2.996621 CTCGTCTGTCCACATCTTTTCC 59.003 50.000 0.00 0.00 0.00 3.13
5718 6220 4.318332 TCATTCAACGGCTCATCATATCC 58.682 43.478 0.00 0.00 0.00 2.59
5777 6279 1.134907 CCCATCAAGCAGCACAATTCC 60.135 52.381 0.00 0.00 0.00 3.01
5801 6303 9.797556 TTTAATTCATCATCAGAATTTCAGCAG 57.202 29.630 6.48 0.00 41.54 4.24
5826 6328 9.893634 TTTGAGCATGATTTATCCATTCATTTT 57.106 25.926 0.00 0.00 0.00 1.82
5827 6329 9.893634 TTTTGAGCATGATTTATCCATTCATTT 57.106 25.926 0.00 0.00 0.00 2.32
5828 6330 9.542462 CTTTTGAGCATGATTTATCCATTCATT 57.458 29.630 0.00 0.00 0.00 2.57
5830 6332 6.982141 GCTTTTGAGCATGATTTATCCATTCA 59.018 34.615 0.00 0.00 34.41 2.57
5831 6333 6.982141 TGCTTTTGAGCATGATTTATCCATTC 59.018 34.615 0.00 0.00 40.23 2.67
5832 6334 6.880484 TGCTTTTGAGCATGATTTATCCATT 58.120 32.000 0.00 0.00 40.23 3.16
5833 6335 6.474140 TGCTTTTGAGCATGATTTATCCAT 57.526 33.333 0.00 0.00 40.23 3.41
5834 6336 5.918426 TGCTTTTGAGCATGATTTATCCA 57.082 34.783 0.00 0.00 40.23 3.41
5835 6337 5.230726 CGTTGCTTTTGAGCATGATTTATCC 59.769 40.000 0.00 0.00 44.94 2.59
5836 6338 6.029607 TCGTTGCTTTTGAGCATGATTTATC 58.970 36.000 0.00 0.00 44.94 1.75
5837 6339 5.953183 TCGTTGCTTTTGAGCATGATTTAT 58.047 33.333 0.00 0.00 44.94 1.40
5838 6340 5.369685 TCGTTGCTTTTGAGCATGATTTA 57.630 34.783 0.00 0.00 44.94 1.40
5839 6341 4.241590 TCGTTGCTTTTGAGCATGATTT 57.758 36.364 0.00 0.00 44.94 2.17
5840 6342 3.921119 TCGTTGCTTTTGAGCATGATT 57.079 38.095 0.00 0.00 44.94 2.57
5841 6343 3.921119 TTCGTTGCTTTTGAGCATGAT 57.079 38.095 0.00 0.00 44.94 2.45
5858 6360 1.402720 GCAACCCACATTGTCCATTCG 60.403 52.381 0.00 0.00 31.83 3.34
5863 6365 2.024414 GGATAGCAACCCACATTGTCC 58.976 52.381 0.00 0.00 31.83 4.02
5891 6393 3.064324 CTTGCAGGCCCCGGAAAG 61.064 66.667 0.73 0.00 0.00 2.62
5917 6419 1.064166 ACAGAATGATGGCTCCCCTTG 60.064 52.381 0.00 0.00 39.69 3.61
5922 6428 3.204526 CTCTCAACAGAATGATGGCTCC 58.795 50.000 0.00 0.00 39.61 4.70
5923 6429 3.204526 CCTCTCAACAGAATGATGGCTC 58.795 50.000 0.00 0.00 39.61 4.70
5925 6431 2.092753 TCCCTCTCAACAGAATGATGGC 60.093 50.000 0.00 0.00 39.61 4.40
5943 6449 4.682787 CCGCCTAAATTTTCAGATTTCCC 58.317 43.478 0.00 0.00 31.96 3.97
5945 6451 4.112634 GGCCGCCTAAATTTTCAGATTTC 58.887 43.478 0.71 0.00 31.96 2.17
5949 6455 2.208132 TGGCCGCCTAAATTTTCAGA 57.792 45.000 11.61 0.00 0.00 3.27
5957 6463 1.228429 AACAGCTTGGCCGCCTAAA 60.228 52.632 11.61 0.00 0.00 1.85
5958 6464 1.674322 GAACAGCTTGGCCGCCTAA 60.674 57.895 11.61 2.64 0.00 2.69
5959 6465 2.046314 GAACAGCTTGGCCGCCTA 60.046 61.111 11.61 1.40 0.00 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.