Multiple sequence alignment - TraesCS3D01G402500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G402500 chr3D 100.000 2789 0 0 1 2789 516875989 516878777 0.000000e+00 5151.0
1 TraesCS3D01G402500 chr3D 86.245 269 29 1 191 451 14202818 14203086 4.550000e-73 285.0
2 TraesCS3D01G402500 chr3B 91.490 2127 107 40 679 2787 680427237 680425167 0.000000e+00 2857.0
3 TraesCS3D01G402500 chr3A 90.824 2136 111 41 676 2787 652023717 652025791 0.000000e+00 2780.0
4 TraesCS3D01G402500 chr5D 87.424 493 49 7 191 670 217322914 217323406 3.140000e-154 555.0
5 TraesCS3D01G402500 chr2D 86.310 504 54 5 193 681 315088138 315088641 4.090000e-148 534.0
6 TraesCS3D01G402500 chr2D 79.960 499 82 13 192 676 361240545 361241039 4.420000e-93 351.0
7 TraesCS3D01G402500 chr4B 86.172 499 44 4 191 676 35517477 35517963 1.480000e-142 516.0
8 TraesCS3D01G402500 chr7A 84.538 498 64 3 191 675 645899423 645899920 5.400000e-132 481.0
9 TraesCS3D01G402500 chr6D 85.045 448 55 5 191 627 427976331 427976777 1.970000e-121 446.0
10 TraesCS3D01G402500 chr6D 95.122 41 1 1 1187 1226 132775241 132775281 2.320000e-06 63.9
11 TraesCS3D01G402500 chr7B 84.633 436 56 7 190 614 14695025 14695460 9.230000e-115 424.0
12 TraesCS3D01G402500 chrUn 82.917 480 65 10 217 679 82565060 82565539 1.550000e-112 416.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G402500 chr3D 516875989 516878777 2788 False 5151 5151 100.000 1 2789 1 chr3D.!!$F2 2788
1 TraesCS3D01G402500 chr3B 680425167 680427237 2070 True 2857 2857 91.490 679 2787 1 chr3B.!!$R1 2108
2 TraesCS3D01G402500 chr3A 652023717 652025791 2074 False 2780 2780 90.824 676 2787 1 chr3A.!!$F1 2111
3 TraesCS3D01G402500 chr2D 315088138 315088641 503 False 534 534 86.310 193 681 1 chr2D.!!$F1 488

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
310 319 0.038343 TTTTTGCCTGCCGAGAATGC 60.038 50.0 0.0 0.0 0.0 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1991 2030 0.313987 CTGTATCGGAGCCGCATGTA 59.686 55.0 3.59 0.0 39.59 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.268920 CCTGGCTGGAGCGCTTTA 59.731 61.111 13.26 2.30 43.26 1.85
20 21 1.377202 CCTGGCTGGAGCGCTTTAA 60.377 57.895 13.26 0.00 43.26 1.52
21 22 1.372087 CCTGGCTGGAGCGCTTTAAG 61.372 60.000 13.26 11.05 43.26 1.85
22 23 0.674895 CTGGCTGGAGCGCTTTAAGT 60.675 55.000 13.26 0.00 43.26 2.24
23 24 0.250727 TGGCTGGAGCGCTTTAAGTT 60.251 50.000 13.26 0.00 43.26 2.66
24 25 0.881796 GGCTGGAGCGCTTTAAGTTT 59.118 50.000 13.26 0.00 43.26 2.66
25 26 1.135660 GGCTGGAGCGCTTTAAGTTTC 60.136 52.381 13.26 0.00 43.26 2.78
26 27 1.464189 GCTGGAGCGCTTTAAGTTTCG 60.464 52.381 13.26 0.00 0.00 3.46
27 28 1.798813 CTGGAGCGCTTTAAGTTTCGT 59.201 47.619 13.26 0.00 0.00 3.85
28 29 1.529438 TGGAGCGCTTTAAGTTTCGTG 59.471 47.619 13.26 0.00 0.00 4.35
29 30 1.592336 GAGCGCTTTAAGTTTCGTGC 58.408 50.000 13.26 0.00 0.00 5.34
30 31 0.110823 AGCGCTTTAAGTTTCGTGCG 60.111 50.000 2.64 0.00 45.12 5.34
31 32 0.111001 GCGCTTTAAGTTTCGTGCGA 60.111 50.000 0.00 0.00 45.15 5.10
32 33 1.853230 CGCTTTAAGTTTCGTGCGAG 58.147 50.000 0.00 0.00 45.15 5.03
33 34 1.592336 GCTTTAAGTTTCGTGCGAGC 58.408 50.000 0.00 0.00 0.00 5.03
34 35 1.724973 GCTTTAAGTTTCGTGCGAGCC 60.725 52.381 0.00 0.00 0.00 4.70
35 36 1.529438 CTTTAAGTTTCGTGCGAGCCA 59.471 47.619 0.00 0.00 0.00 4.75
36 37 1.144969 TTAAGTTTCGTGCGAGCCAG 58.855 50.000 0.00 0.00 0.00 4.85
37 38 1.289109 TAAGTTTCGTGCGAGCCAGC 61.289 55.000 0.00 0.00 37.71 4.85
38 39 2.996168 AAGTTTCGTGCGAGCCAGCT 62.996 55.000 0.00 0.00 38.13 4.24
39 40 2.280797 TTTCGTGCGAGCCAGCTT 60.281 55.556 0.00 0.00 38.13 3.74
40 41 2.317609 TTTCGTGCGAGCCAGCTTC 61.318 57.895 0.00 0.00 38.13 3.86
41 42 2.715532 TTTCGTGCGAGCCAGCTTCT 62.716 55.000 0.00 0.00 38.13 2.85
42 43 1.873270 TTCGTGCGAGCCAGCTTCTA 61.873 55.000 0.00 0.00 38.13 2.10
43 44 2.161486 CGTGCGAGCCAGCTTCTAC 61.161 63.158 0.00 0.00 38.13 2.59
44 45 2.161486 GTGCGAGCCAGCTTCTACG 61.161 63.158 0.00 0.00 38.13 3.51
45 46 2.182030 GCGAGCCAGCTTCTACGT 59.818 61.111 0.00 0.00 0.00 3.57
46 47 2.161486 GCGAGCCAGCTTCTACGTG 61.161 63.158 0.00 0.00 0.00 4.49
47 48 2.161486 CGAGCCAGCTTCTACGTGC 61.161 63.158 0.00 0.00 0.00 5.34
48 49 1.079819 GAGCCAGCTTCTACGTGCA 60.080 57.895 0.00 0.00 0.00 4.57
49 50 1.079543 AGCCAGCTTCTACGTGCAG 60.080 57.895 0.00 0.00 0.00 4.41
50 51 2.103042 GCCAGCTTCTACGTGCAGG 61.103 63.158 4.53 4.53 38.62 4.85
51 52 2.103042 CCAGCTTCTACGTGCAGGC 61.103 63.158 6.26 0.00 0.00 4.85
52 53 2.103042 CAGCTTCTACGTGCAGGCC 61.103 63.158 6.26 0.00 0.00 5.19
53 54 2.047274 GCTTCTACGTGCAGGCCA 60.047 61.111 5.01 0.00 0.00 5.36
54 55 2.103042 GCTTCTACGTGCAGGCCAG 61.103 63.158 5.01 0.00 0.00 4.85
55 56 1.591703 CTTCTACGTGCAGGCCAGA 59.408 57.895 5.01 6.76 0.00 3.86
56 57 0.737715 CTTCTACGTGCAGGCCAGAC 60.738 60.000 5.01 0.00 0.00 3.51
57 58 1.468506 TTCTACGTGCAGGCCAGACA 61.469 55.000 5.01 0.00 0.00 3.41
58 59 1.005037 CTACGTGCAGGCCAGACAA 60.005 57.895 5.01 0.00 0.00 3.18
59 60 1.291877 CTACGTGCAGGCCAGACAAC 61.292 60.000 5.01 0.00 0.00 3.32
60 61 2.034048 TACGTGCAGGCCAGACAACA 62.034 55.000 5.01 0.00 0.00 3.33
61 62 2.186160 CGTGCAGGCCAGACAACAA 61.186 57.895 5.01 0.00 0.00 2.83
62 63 1.360192 GTGCAGGCCAGACAACAAC 59.640 57.895 5.01 0.00 0.00 3.32
63 64 1.103398 GTGCAGGCCAGACAACAACT 61.103 55.000 5.01 0.00 0.00 3.16
64 65 1.102809 TGCAGGCCAGACAACAACTG 61.103 55.000 5.01 0.00 35.43 3.16
65 66 0.819259 GCAGGCCAGACAACAACTGA 60.819 55.000 5.01 0.00 37.54 3.41
66 67 1.233019 CAGGCCAGACAACAACTGAG 58.767 55.000 5.01 0.00 37.54 3.35
67 68 0.839946 AGGCCAGACAACAACTGAGT 59.160 50.000 5.01 0.00 37.54 3.41
68 69 2.047061 AGGCCAGACAACAACTGAGTA 58.953 47.619 5.01 0.00 37.54 2.59
69 70 2.143925 GGCCAGACAACAACTGAGTAC 58.856 52.381 0.00 0.00 37.54 2.73
70 71 2.224305 GGCCAGACAACAACTGAGTACT 60.224 50.000 0.00 0.00 37.54 2.73
71 72 3.467803 GCCAGACAACAACTGAGTACTT 58.532 45.455 0.00 0.00 37.54 2.24
72 73 4.502604 GGCCAGACAACAACTGAGTACTTA 60.503 45.833 0.00 0.00 37.54 2.24
73 74 4.686554 GCCAGACAACAACTGAGTACTTAG 59.313 45.833 12.85 12.85 37.54 2.18
74 75 4.686554 CCAGACAACAACTGAGTACTTAGC 59.313 45.833 14.24 0.00 37.54 3.09
75 76 4.686554 CAGACAACAACTGAGTACTTAGCC 59.313 45.833 14.24 0.00 37.54 3.93
76 77 3.995048 GACAACAACTGAGTACTTAGCCC 59.005 47.826 14.24 0.00 0.00 5.19
77 78 2.993899 CAACAACTGAGTACTTAGCCCG 59.006 50.000 14.24 5.91 0.00 6.13
78 79 1.067071 ACAACTGAGTACTTAGCCCGC 60.067 52.381 14.24 0.00 0.00 6.13
79 80 0.535797 AACTGAGTACTTAGCCCGCC 59.464 55.000 14.24 0.00 0.00 6.13
80 81 0.613853 ACTGAGTACTTAGCCCGCCA 60.614 55.000 14.24 0.00 0.00 5.69
81 82 0.535335 CTGAGTACTTAGCCCGCCAA 59.465 55.000 1.18 0.00 0.00 4.52
82 83 0.978151 TGAGTACTTAGCCCGCCAAA 59.022 50.000 0.00 0.00 0.00 3.28
83 84 1.066430 TGAGTACTTAGCCCGCCAAAG 60.066 52.381 0.00 0.00 0.00 2.77
84 85 0.981943 AGTACTTAGCCCGCCAAAGT 59.018 50.000 9.27 9.27 37.27 2.66
85 86 1.350019 AGTACTTAGCCCGCCAAAGTT 59.650 47.619 9.52 0.00 35.23 2.66
86 87 2.156917 GTACTTAGCCCGCCAAAGTTT 58.843 47.619 9.52 0.00 35.23 2.66
87 88 0.958822 ACTTAGCCCGCCAAAGTTTG 59.041 50.000 8.73 8.73 29.25 2.93
102 103 7.504924 CCAAAGTTTGGTTAGACTTGATACA 57.495 36.000 24.17 0.00 45.93 2.29
103 104 7.936584 CCAAAGTTTGGTTAGACTTGATACAA 58.063 34.615 24.17 0.00 45.93 2.41
104 105 7.860872 CCAAAGTTTGGTTAGACTTGATACAAC 59.139 37.037 24.17 0.00 45.93 3.32
105 106 7.506328 AAGTTTGGTTAGACTTGATACAACC 57.494 36.000 0.00 0.00 39.28 3.77
106 107 6.838382 AGTTTGGTTAGACTTGATACAACCT 58.162 36.000 4.60 0.00 39.51 3.50
107 108 7.970102 AGTTTGGTTAGACTTGATACAACCTA 58.030 34.615 4.60 0.00 39.51 3.08
108 109 7.876582 AGTTTGGTTAGACTTGATACAACCTAC 59.123 37.037 4.60 3.50 39.51 3.18
109 110 6.290294 TGGTTAGACTTGATACAACCTACC 57.710 41.667 4.60 0.00 39.51 3.18
110 111 5.781306 TGGTTAGACTTGATACAACCTACCA 59.219 40.000 4.60 0.00 39.51 3.25
111 112 6.270463 TGGTTAGACTTGATACAACCTACCAA 59.730 38.462 4.60 0.00 39.51 3.67
112 113 7.163441 GGTTAGACTTGATACAACCTACCAAA 58.837 38.462 0.00 0.00 36.53 3.28
113 114 7.118825 GGTTAGACTTGATACAACCTACCAAAC 59.881 40.741 0.00 0.00 36.53 2.93
114 115 6.182507 AGACTTGATACAACCTACCAAACA 57.817 37.500 0.00 0.00 0.00 2.83
115 116 5.995897 AGACTTGATACAACCTACCAAACAC 59.004 40.000 0.00 0.00 0.00 3.32
116 117 4.753107 ACTTGATACAACCTACCAAACACG 59.247 41.667 0.00 0.00 0.00 4.49
117 118 4.339872 TGATACAACCTACCAAACACGT 57.660 40.909 0.00 0.00 0.00 4.49
118 119 4.309099 TGATACAACCTACCAAACACGTC 58.691 43.478 0.00 0.00 0.00 4.34
119 120 1.957668 ACAACCTACCAAACACGTCC 58.042 50.000 0.00 0.00 0.00 4.79
120 121 1.232119 CAACCTACCAAACACGTCCC 58.768 55.000 0.00 0.00 0.00 4.46
121 122 1.134228 AACCTACCAAACACGTCCCT 58.866 50.000 0.00 0.00 0.00 4.20
122 123 2.014010 ACCTACCAAACACGTCCCTA 57.986 50.000 0.00 0.00 0.00 3.53
123 124 1.897802 ACCTACCAAACACGTCCCTAG 59.102 52.381 0.00 0.00 0.00 3.02
124 125 1.897802 CCTACCAAACACGTCCCTAGT 59.102 52.381 0.00 0.00 0.00 2.57
125 126 2.353406 CCTACCAAACACGTCCCTAGTG 60.353 54.545 0.00 0.00 44.57 2.74
126 127 1.416243 ACCAAACACGTCCCTAGTGA 58.584 50.000 3.20 0.00 41.83 3.41
127 128 1.975680 ACCAAACACGTCCCTAGTGAT 59.024 47.619 3.20 0.00 41.83 3.06
128 129 2.370849 ACCAAACACGTCCCTAGTGATT 59.629 45.455 3.20 0.00 41.83 2.57
129 130 3.579586 ACCAAACACGTCCCTAGTGATTA 59.420 43.478 3.20 0.00 41.83 1.75
130 131 3.930848 CCAAACACGTCCCTAGTGATTAC 59.069 47.826 3.20 0.00 41.83 1.89
131 132 3.881937 AACACGTCCCTAGTGATTACC 57.118 47.619 3.20 0.00 41.83 2.85
132 133 2.811410 ACACGTCCCTAGTGATTACCA 58.189 47.619 3.20 0.00 41.83 3.25
133 134 3.167485 ACACGTCCCTAGTGATTACCAA 58.833 45.455 3.20 0.00 41.83 3.67
134 135 3.579586 ACACGTCCCTAGTGATTACCAAA 59.420 43.478 3.20 0.00 41.83 3.28
135 136 3.930848 CACGTCCCTAGTGATTACCAAAC 59.069 47.826 0.00 0.00 41.83 2.93
136 137 3.836562 ACGTCCCTAGTGATTACCAAACT 59.163 43.478 0.00 0.00 0.00 2.66
137 138 4.285260 ACGTCCCTAGTGATTACCAAACTT 59.715 41.667 0.00 0.00 0.00 2.66
138 139 5.221783 ACGTCCCTAGTGATTACCAAACTTT 60.222 40.000 0.00 0.00 0.00 2.66
139 140 5.704053 CGTCCCTAGTGATTACCAAACTTTT 59.296 40.000 0.00 0.00 0.00 2.27
140 141 6.348213 CGTCCCTAGTGATTACCAAACTTTTG 60.348 42.308 0.00 0.00 37.90 2.44
141 142 6.489022 GTCCCTAGTGATTACCAAACTTTTGT 59.511 38.462 1.21 0.00 36.45 2.83
142 143 6.713450 TCCCTAGTGATTACCAAACTTTTGTC 59.287 38.462 1.21 0.00 36.45 3.18
143 144 6.072119 CCCTAGTGATTACCAAACTTTTGTCC 60.072 42.308 1.21 0.00 36.45 4.02
144 145 6.715264 CCTAGTGATTACCAAACTTTTGTCCT 59.285 38.462 1.21 0.00 36.45 3.85
145 146 6.635030 AGTGATTACCAAACTTTTGTCCTC 57.365 37.500 1.21 0.00 36.45 3.71
146 147 6.365520 AGTGATTACCAAACTTTTGTCCTCT 58.634 36.000 1.21 0.00 36.45 3.69
147 148 6.263168 AGTGATTACCAAACTTTTGTCCTCTG 59.737 38.462 1.21 0.00 36.45 3.35
148 149 6.039382 GTGATTACCAAACTTTTGTCCTCTGT 59.961 38.462 1.21 0.00 36.45 3.41
149 150 6.605594 TGATTACCAAACTTTTGTCCTCTGTT 59.394 34.615 1.21 0.00 36.45 3.16
150 151 7.776030 TGATTACCAAACTTTTGTCCTCTGTTA 59.224 33.333 1.21 0.00 36.45 2.41
151 152 8.706322 ATTACCAAACTTTTGTCCTCTGTTAT 57.294 30.769 1.21 0.00 36.45 1.89
152 153 6.635030 ACCAAACTTTTGTCCTCTGTTATC 57.365 37.500 1.21 0.00 36.45 1.75
153 154 6.126409 ACCAAACTTTTGTCCTCTGTTATCA 58.874 36.000 1.21 0.00 36.45 2.15
154 155 6.263168 ACCAAACTTTTGTCCTCTGTTATCAG 59.737 38.462 1.21 0.00 38.41 2.90
155 156 6.263168 CCAAACTTTTGTCCTCTGTTATCAGT 59.737 38.462 0.83 0.00 38.32 3.41
156 157 7.201821 CCAAACTTTTGTCCTCTGTTATCAGTT 60.202 37.037 0.83 0.00 38.32 3.16
157 158 7.881775 AACTTTTGTCCTCTGTTATCAGTTT 57.118 32.000 0.83 0.00 41.91 2.66
158 159 7.497925 ACTTTTGTCCTCTGTTATCAGTTTC 57.502 36.000 0.83 0.00 41.91 2.78
159 160 6.202954 ACTTTTGTCCTCTGTTATCAGTTTCG 59.797 38.462 0.83 0.00 41.91 3.46
160 161 4.188247 TGTCCTCTGTTATCAGTTTCGG 57.812 45.455 0.83 0.00 41.91 4.30
161 162 2.930682 GTCCTCTGTTATCAGTTTCGGC 59.069 50.000 0.83 0.00 41.91 5.54
162 163 2.565391 TCCTCTGTTATCAGTTTCGGCA 59.435 45.455 0.83 0.00 41.91 5.69
163 164 3.007506 TCCTCTGTTATCAGTTTCGGCAA 59.992 43.478 0.83 0.00 41.91 4.52
164 165 3.751175 CCTCTGTTATCAGTTTCGGCAAA 59.249 43.478 0.83 0.00 41.91 3.68
165 166 4.215399 CCTCTGTTATCAGTTTCGGCAAAA 59.785 41.667 0.83 0.00 41.91 2.44
166 167 5.278266 CCTCTGTTATCAGTTTCGGCAAAAA 60.278 40.000 0.83 0.00 41.91 1.94
190 191 7.832503 AAAAATTGGTGTGAGAACTCTTTTG 57.167 32.000 3.51 0.00 0.00 2.44
191 192 4.574599 ATTGGTGTGAGAACTCTTTTGC 57.425 40.909 3.51 0.00 0.00 3.68
195 196 2.033424 GTGTGAGAACTCTTTTGCCACC 59.967 50.000 3.51 0.00 0.00 4.61
201 202 2.159179 ACTCTTTTGCCACCAGGTTT 57.841 45.000 0.00 0.00 37.19 3.27
202 203 2.031870 ACTCTTTTGCCACCAGGTTTC 58.968 47.619 0.00 0.00 37.19 2.78
229 230 2.320745 TCATGTCTGATGCTGCGATT 57.679 45.000 0.00 0.00 0.00 3.34
232 233 3.064408 TCATGTCTGATGCTGCGATTTTC 59.936 43.478 0.00 0.00 0.00 2.29
254 255 4.081642 TCTCCGAACTAGGAAAGATTGGTG 60.082 45.833 0.00 0.00 40.25 4.17
257 258 3.751175 CGAACTAGGAAAGATTGGTGCAA 59.249 43.478 0.00 0.00 0.00 4.08
259 260 3.690460 ACTAGGAAAGATTGGTGCAAGG 58.310 45.455 0.00 0.00 0.00 3.61
266 267 0.539438 GATTGGTGCAAGGGTGGTCA 60.539 55.000 0.00 0.00 0.00 4.02
288 289 7.201679 GGTCACTCTAAATTCTGATGGTCAATG 60.202 40.741 0.00 0.00 0.00 2.82
293 294 8.408043 TCTAAATTCTGATGGTCAATGTGTTT 57.592 30.769 0.00 0.00 0.00 2.83
310 319 0.038343 TTTTTGCCTGCCGAGAATGC 60.038 50.000 0.00 0.00 0.00 3.56
314 323 2.768492 GCCTGCCGAGAATGCAAGG 61.768 63.158 0.00 0.00 38.46 3.61
350 359 2.690778 CGAGGCCTTGGCTTTTCGG 61.691 63.158 12.81 1.73 38.98 4.30
356 365 3.651480 CTTGGCTTTTCGGCGAGCG 62.651 63.158 10.46 3.67 42.12 5.03
370 379 1.075542 CGAGCGGTTTATCTTGCACA 58.924 50.000 0.00 0.00 0.00 4.57
372 381 2.474526 CGAGCGGTTTATCTTGCACAAG 60.475 50.000 3.94 3.94 39.71 3.16
383 392 4.908601 TCTTGCACAAGAGGAAGGATAA 57.091 40.909 8.99 0.00 42.06 1.75
392 401 3.983821 AGAGGAAGGATAAGACTCGGTT 58.016 45.455 0.00 0.00 33.58 4.44
404 413 1.179814 ACTCGGTTGTCTTCGCCTCT 61.180 55.000 0.00 0.00 0.00 3.69
425 434 1.826720 GATTGCCTTTCCCTGATGCAA 59.173 47.619 0.00 0.00 44.96 4.08
426 435 1.714541 TTGCCTTTCCCTGATGCAAA 58.285 45.000 0.00 0.00 38.83 3.68
446 455 0.613777 GGGTCAATTCTCCTGTCCGT 59.386 55.000 0.00 0.00 0.00 4.69
451 460 0.613777 AATTCTCCTGTCCGTGACCC 59.386 55.000 2.23 0.00 0.00 4.46
454 463 0.471211 TCTCCTGTCCGTGACCCTTT 60.471 55.000 2.23 0.00 0.00 3.11
455 464 0.320771 CTCCTGTCCGTGACCCTTTG 60.321 60.000 2.23 0.00 0.00 2.77
456 465 1.052124 TCCTGTCCGTGACCCTTTGT 61.052 55.000 2.23 0.00 0.00 2.83
458 467 0.944386 CTGTCCGTGACCCTTTGTTG 59.056 55.000 2.23 0.00 0.00 3.33
483 492 0.603065 CTCAGTGGTGTCGGACATCA 59.397 55.000 19.67 19.67 36.78 3.07
486 495 2.038426 TCAGTGGTGTCGGACATCAAAT 59.962 45.455 24.55 14.08 41.47 2.32
490 499 4.081142 AGTGGTGTCGGACATCAAATATGA 60.081 41.667 24.55 0.00 41.47 2.15
493 502 3.863424 GTGTCGGACATCAAATATGACGT 59.137 43.478 14.78 0.00 38.69 4.34
500 509 4.744570 ACATCAAATATGACGTGTCGAGT 58.255 39.130 0.00 0.00 38.69 4.18
509 518 3.597255 TGACGTGTCGAGTATCTCTTCT 58.403 45.455 0.00 0.00 0.00 2.85
513 522 3.125487 CGTGTCGAGTATCTCTTCTGTGT 59.875 47.826 0.00 0.00 0.00 3.72
528 537 7.229306 TCTCTTCTGTGTTGTTCAAGCATATTT 59.771 33.333 0.00 0.00 0.00 1.40
533 542 4.616802 GTGTTGTTCAAGCATATTTGTCGG 59.383 41.667 0.00 0.00 0.00 4.79
538 547 2.677836 TCAAGCATATTTGTCGGCAGTC 59.322 45.455 0.00 0.00 0.00 3.51
546 556 6.677920 GCATATTTGTCGGCAGTCTAATGTTT 60.678 38.462 0.00 0.00 0.00 2.83
601 614 6.435428 ACTATGGTCGTTGTGTTTTTCATTC 58.565 36.000 0.00 0.00 0.00 2.67
609 622 5.050634 CGTTGTGTTTTTCATTCTACTCCGA 60.051 40.000 0.00 0.00 0.00 4.55
615 628 7.323656 GTGTTTTTCATTCTACTCCGATTTGTG 59.676 37.037 0.00 0.00 0.00 3.33
641 656 5.068723 CCGGGAGACTATGTAACTATGTTGT 59.931 44.000 0.00 0.00 0.00 3.32
643 658 6.696148 CGGGAGACTATGTAACTATGTTGTTC 59.304 42.308 0.00 0.00 0.00 3.18
646 661 7.431668 GGAGACTATGTAACTATGTTGTTCGAC 59.568 40.741 0.00 0.00 0.00 4.20
654 669 9.135843 TGTAACTATGTTGTTCGACTAATGAAG 57.864 33.333 0.00 0.00 0.00 3.02
662 677 1.063616 TCGACTAATGAAGAGCCGACG 59.936 52.381 0.00 0.00 0.00 5.12
670 685 3.374220 TGAAGAGCCGACGTTTTCTAA 57.626 42.857 0.00 0.00 0.00 2.10
810 826 2.881266 CTCAACCCACACACACGCG 61.881 63.158 3.53 3.53 0.00 6.01
822 838 4.000557 CACGCGCACACTGACACC 62.001 66.667 5.73 0.00 0.00 4.16
1017 1033 4.778143 ATGGACTTCGTGGGCGGC 62.778 66.667 0.00 0.00 38.89 6.53
1240 1256 1.374252 GTCCGTCAGCACAACCGAT 60.374 57.895 0.00 0.00 0.00 4.18
1241 1257 1.080093 TCCGTCAGCACAACCGATC 60.080 57.895 0.00 0.00 0.00 3.69
1242 1258 2.444624 CCGTCAGCACAACCGATCG 61.445 63.158 8.51 8.51 0.00 3.69
1243 1259 2.778679 GTCAGCACAACCGATCGC 59.221 61.111 10.32 0.00 0.00 4.58
1244 1260 2.434185 TCAGCACAACCGATCGCC 60.434 61.111 10.32 0.00 0.00 5.54
1245 1261 3.853330 CAGCACAACCGATCGCCG 61.853 66.667 10.32 0.00 38.18 6.46
1247 1263 3.419759 GCACAACCGATCGCCGTT 61.420 61.111 10.32 6.77 36.31 4.44
1249 1265 2.433664 ACAACCGATCGCCGTTCC 60.434 61.111 10.32 0.00 36.31 3.62
1251 1267 2.165301 CAACCGATCGCCGTTCCTC 61.165 63.158 10.32 0.00 36.31 3.71
1255 1271 2.026301 GATCGCCGTTCCTCTCCG 59.974 66.667 0.00 0.00 0.00 4.63
1260 1276 1.005394 GCCGTTCCTCTCCGTTTCA 60.005 57.895 0.00 0.00 0.00 2.69
1268 1284 1.361668 CTCTCCGTTTCACCGCCATG 61.362 60.000 0.00 0.00 0.00 3.66
1287 1303 1.818674 TGAATGTCGTCTGCTCTGCTA 59.181 47.619 0.00 0.00 0.00 3.49
1288 1304 2.189342 GAATGTCGTCTGCTCTGCTAC 58.811 52.381 0.00 0.00 0.00 3.58
1289 1305 1.468985 ATGTCGTCTGCTCTGCTACT 58.531 50.000 0.00 0.00 0.00 2.57
1290 1306 1.248486 TGTCGTCTGCTCTGCTACTT 58.752 50.000 0.00 0.00 0.00 2.24
1291 1307 2.433436 TGTCGTCTGCTCTGCTACTTA 58.567 47.619 0.00 0.00 0.00 2.24
1292 1308 2.817844 TGTCGTCTGCTCTGCTACTTAA 59.182 45.455 0.00 0.00 0.00 1.85
1293 1309 3.172824 GTCGTCTGCTCTGCTACTTAAC 58.827 50.000 0.00 0.00 0.00 2.01
1294 1310 2.817844 TCGTCTGCTCTGCTACTTAACA 59.182 45.455 0.00 0.00 0.00 2.41
1295 1311 3.254903 TCGTCTGCTCTGCTACTTAACAA 59.745 43.478 0.00 0.00 0.00 2.83
1302 1318 4.991687 GCTCTGCTACTTAACAACTGACTT 59.008 41.667 0.00 0.00 0.00 3.01
1310 1326 1.101049 AACAACTGACTTGGGTGCGG 61.101 55.000 0.00 0.00 33.66 5.69
1314 1330 4.947147 TGACTTGGGTGCGGTGCC 62.947 66.667 0.00 0.00 0.00 5.01
1439 1460 1.749638 CGTCTGGGTCTACGAGGCT 60.750 63.158 0.00 0.00 41.55 4.58
1450 1471 2.773087 TCTACGAGGCTAAGGTCTCTCT 59.227 50.000 0.00 0.00 41.64 3.10
1453 1474 1.946768 CGAGGCTAAGGTCTCTCTCAG 59.053 57.143 0.00 0.00 41.64 3.35
1454 1475 2.306847 GAGGCTAAGGTCTCTCTCAGG 58.693 57.143 0.00 0.00 40.72 3.86
1476 1497 2.126618 CGCCGCTCTCACACGTTA 60.127 61.111 0.00 0.00 0.00 3.18
1488 1509 0.172803 ACACGTTACTCATCGGCTCC 59.827 55.000 0.00 0.00 0.00 4.70
1505 1526 1.391485 CTCCGCTGTTTCTCATCGTTG 59.609 52.381 0.00 0.00 34.42 4.10
1506 1527 1.148310 CCGCTGTTTCTCATCGTTGT 58.852 50.000 0.00 0.00 34.42 3.32
1507 1528 1.126846 CCGCTGTTTCTCATCGTTGTC 59.873 52.381 0.00 0.00 34.42 3.18
1508 1529 2.061773 CGCTGTTTCTCATCGTTGTCT 58.938 47.619 0.00 0.00 32.06 3.41
1513 1534 3.050619 GTTTCTCATCGTTGTCTGTCGT 58.949 45.455 0.00 0.00 0.00 4.34
1527 1548 1.322338 CTGTCGTGTGTTCGTTTCGTT 59.678 47.619 0.00 0.00 0.00 3.85
1623 1644 0.958382 GGAATGCGGCAACTGGTACA 60.958 55.000 6.82 0.00 0.00 2.90
1655 1689 5.997746 CCACCTGAACTCTCACTGAATTTAA 59.002 40.000 0.00 0.00 0.00 1.52
1658 1692 7.012327 CACCTGAACTCTCACTGAATTTAACAA 59.988 37.037 0.00 0.00 0.00 2.83
1660 1694 7.857885 CCTGAACTCTCACTGAATTTAACAAAC 59.142 37.037 0.00 0.00 0.00 2.93
1662 1696 7.338196 TGAACTCTCACTGAATTTAACAAACCA 59.662 33.333 0.00 0.00 0.00 3.67
1663 1697 7.823745 ACTCTCACTGAATTTAACAAACCAT 57.176 32.000 0.00 0.00 0.00 3.55
1664 1698 7.651808 ACTCTCACTGAATTTAACAAACCATG 58.348 34.615 0.00 0.00 0.00 3.66
1665 1699 7.502226 ACTCTCACTGAATTTAACAAACCATGA 59.498 33.333 0.00 0.00 0.00 3.07
1666 1700 7.648142 TCTCACTGAATTTAACAAACCATGAC 58.352 34.615 0.00 0.00 0.00 3.06
1667 1701 7.284261 TCTCACTGAATTTAACAAACCATGACA 59.716 33.333 0.00 0.00 0.00 3.58
1668 1702 7.424803 TCACTGAATTTAACAAACCATGACAG 58.575 34.615 0.00 0.00 0.00 3.51
1669 1703 7.284261 TCACTGAATTTAACAAACCATGACAGA 59.716 33.333 0.00 0.00 0.00 3.41
1670 1704 7.379529 CACTGAATTTAACAAACCATGACAGAC 59.620 37.037 0.00 0.00 0.00 3.51
1671 1705 6.434596 TGAATTTAACAAACCATGACAGACG 58.565 36.000 0.00 0.00 0.00 4.18
1672 1706 6.261158 TGAATTTAACAAACCATGACAGACGA 59.739 34.615 0.00 0.00 0.00 4.20
1673 1707 5.666969 TTTAACAAACCATGACAGACGAG 57.333 39.130 0.00 0.00 0.00 4.18
1674 1708 2.910688 ACAAACCATGACAGACGAGT 57.089 45.000 0.00 0.00 0.00 4.18
1675 1709 2.483876 ACAAACCATGACAGACGAGTG 58.516 47.619 0.00 0.00 0.00 3.51
1676 1710 2.158957 ACAAACCATGACAGACGAGTGT 60.159 45.455 0.00 0.00 0.00 3.55
1677 1711 2.872245 CAAACCATGACAGACGAGTGTT 59.128 45.455 0.00 0.00 0.00 3.32
1678 1712 2.440539 ACCATGACAGACGAGTGTTC 57.559 50.000 0.00 0.00 0.00 3.18
1679 1713 1.964223 ACCATGACAGACGAGTGTTCT 59.036 47.619 0.00 0.00 0.00 3.01
1680 1714 2.029828 ACCATGACAGACGAGTGTTCTC 60.030 50.000 0.00 0.00 37.35 2.87
1681 1715 2.230025 CCATGACAGACGAGTGTTCTCT 59.770 50.000 0.00 0.00 38.45 3.10
1682 1716 3.497118 CATGACAGACGAGTGTTCTCTC 58.503 50.000 0.00 0.00 38.45 3.20
1683 1717 2.852449 TGACAGACGAGTGTTCTCTCT 58.148 47.619 0.00 0.00 38.45 3.10
1691 1725 4.302455 ACGAGTGTTCTCTCTTGTGAATG 58.698 43.478 0.00 0.00 38.45 2.67
1704 1738 0.721718 GTGAATGACTTTCGAGCCGG 59.278 55.000 0.00 0.00 37.13 6.13
1705 1739 0.606096 TGAATGACTTTCGAGCCGGA 59.394 50.000 5.05 0.00 37.13 5.14
1749 1783 0.603707 TCTGGAAACCGCTGAAGCAG 60.604 55.000 2.79 0.00 42.21 4.24
1761 1795 1.071385 CTGAAGCAGATATCGGGCCTT 59.929 52.381 15.87 7.01 32.44 4.35
1837 1871 2.025155 TCATCTCTCGCCTTACACTCC 58.975 52.381 0.00 0.00 0.00 3.85
1855 1889 4.748102 CACTCCGTTTTCAGCTTTGTACTA 59.252 41.667 0.00 0.00 0.00 1.82
1872 1906 5.804639 TGTACTAAAGCAGGACAATGATGT 58.195 37.500 0.00 0.00 45.62 3.06
1901 1935 7.946655 ACATACGTATACATTTGACATCTGG 57.053 36.000 7.96 0.00 0.00 3.86
1925 1964 4.142881 GCTCGGTTAATTCCACAAGAGAAC 60.143 45.833 12.62 0.00 0.00 3.01
1960 1999 7.589954 GTGTAACACCTTTCAAACATACACATC 59.410 37.037 0.00 0.00 40.76 3.06
1991 2030 9.826574 ACAAATCAAATCATATATGCAAAGCTT 57.173 25.926 7.92 0.00 0.00 3.74
1999 2038 3.631145 ATATGCAAAGCTTACATGCGG 57.369 42.857 19.91 0.00 42.91 5.69
2011 2050 1.363807 CATGCGGCTCCGATACAGA 59.636 57.895 13.11 0.00 42.83 3.41
2013 2052 1.391933 ATGCGGCTCCGATACAGACA 61.392 55.000 13.11 0.00 42.83 3.41
2014 2053 1.299468 GCGGCTCCGATACAGACAG 60.299 63.158 13.11 0.00 42.83 3.51
2015 2054 1.725557 GCGGCTCCGATACAGACAGA 61.726 60.000 13.11 0.00 42.83 3.41
2016 2055 0.309302 CGGCTCCGATACAGACAGAG 59.691 60.000 1.35 0.00 42.83 3.35
2017 2056 1.394618 GGCTCCGATACAGACAGAGT 58.605 55.000 0.00 0.00 0.00 3.24
2018 2057 1.335496 GGCTCCGATACAGACAGAGTC 59.665 57.143 0.00 0.00 0.00 3.36
2019 2058 2.017782 GCTCCGATACAGACAGAGTCA 58.982 52.381 0.00 0.00 34.60 3.41
2020 2059 2.032799 GCTCCGATACAGACAGAGTCAG 59.967 54.545 0.00 0.00 34.60 3.51
2033 2072 1.379309 AGTCAGAGAGGCCTCGACC 60.379 63.158 26.95 19.08 44.08 4.79
2052 2091 1.552486 CCTCAGGGTTCAGGTCCACTA 60.552 57.143 0.00 0.00 0.00 2.74
2100 2161 2.482374 GTACACGAGGTCGGTCCG 59.518 66.667 4.39 4.39 44.95 4.79
2644 2705 1.512310 GAAGCTCGAGGTGTCGTCG 60.512 63.158 19.39 5.66 46.85 5.12
2726 2787 4.081420 TGAGCACCTTGTATTCTTCTCCTC 60.081 45.833 0.00 0.00 0.00 3.71
2742 2803 1.035932 CCTCCTTGCTCAGCCATTGG 61.036 60.000 0.00 0.00 0.00 3.16
2744 2805 0.991146 TCCTTGCTCAGCCATTGGTA 59.009 50.000 4.26 0.00 0.00 3.25
2787 2848 4.278170 TGTGAGATTGTTGGGTTTGATGAC 59.722 41.667 0.00 0.00 0.00 3.06
2788 2849 4.278170 GTGAGATTGTTGGGTTTGATGACA 59.722 41.667 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.976701 TAAAGCGCTCCAGCCAGGC 62.977 63.158 12.06 1.84 37.91 4.85
2 3 1.372087 CTTAAAGCGCTCCAGCCAGG 61.372 60.000 12.06 0.00 37.91 4.45
3 4 0.674895 ACTTAAAGCGCTCCAGCCAG 60.675 55.000 12.06 3.84 37.91 4.85
4 5 0.250727 AACTTAAAGCGCTCCAGCCA 60.251 50.000 12.06 0.00 37.91 4.75
5 6 0.881796 AAACTTAAAGCGCTCCAGCC 59.118 50.000 12.06 0.00 37.91 4.85
6 7 1.464189 CGAAACTTAAAGCGCTCCAGC 60.464 52.381 12.06 0.00 37.78 4.85
7 8 1.798813 ACGAAACTTAAAGCGCTCCAG 59.201 47.619 12.06 9.79 0.00 3.86
8 9 1.529438 CACGAAACTTAAAGCGCTCCA 59.471 47.619 12.06 0.00 0.00 3.86
9 10 1.724973 GCACGAAACTTAAAGCGCTCC 60.725 52.381 12.06 0.00 0.00 4.70
10 11 1.592336 GCACGAAACTTAAAGCGCTC 58.408 50.000 12.06 0.00 0.00 5.03
11 12 0.110823 CGCACGAAACTTAAAGCGCT 60.111 50.000 2.64 2.64 38.68 5.92
12 13 0.111001 TCGCACGAAACTTAAAGCGC 60.111 50.000 0.00 0.00 44.27 5.92
13 14 1.853230 CTCGCACGAAACTTAAAGCG 58.147 50.000 0.00 0.00 45.79 4.68
14 15 1.592336 GCTCGCACGAAACTTAAAGC 58.408 50.000 0.00 0.00 0.00 3.51
15 16 1.529438 TGGCTCGCACGAAACTTAAAG 59.471 47.619 0.00 0.00 0.00 1.85
16 17 1.529438 CTGGCTCGCACGAAACTTAAA 59.471 47.619 0.00 0.00 0.00 1.52
17 18 1.144969 CTGGCTCGCACGAAACTTAA 58.855 50.000 0.00 0.00 0.00 1.85
18 19 1.289109 GCTGGCTCGCACGAAACTTA 61.289 55.000 0.00 0.00 0.00 2.24
19 20 2.607892 GCTGGCTCGCACGAAACTT 61.608 57.895 0.00 0.00 0.00 2.66
20 21 2.996168 AAGCTGGCTCGCACGAAACT 62.996 55.000 0.00 0.00 0.00 2.66
21 22 2.500183 GAAGCTGGCTCGCACGAAAC 62.500 60.000 0.00 0.00 0.00 2.78
22 23 2.280797 AAGCTGGCTCGCACGAAA 60.281 55.556 0.00 0.00 0.00 3.46
23 24 1.873270 TAGAAGCTGGCTCGCACGAA 61.873 55.000 0.00 0.00 0.00 3.85
24 25 2.340328 TAGAAGCTGGCTCGCACGA 61.340 57.895 0.00 0.00 0.00 4.35
25 26 2.161486 GTAGAAGCTGGCTCGCACG 61.161 63.158 0.00 0.00 0.00 5.34
26 27 2.161486 CGTAGAAGCTGGCTCGCAC 61.161 63.158 0.00 0.00 0.00 5.34
27 28 2.181777 CGTAGAAGCTGGCTCGCA 59.818 61.111 0.00 0.00 0.00 5.10
28 29 2.161486 CACGTAGAAGCTGGCTCGC 61.161 63.158 0.00 0.00 0.00 5.03
29 30 2.161486 GCACGTAGAAGCTGGCTCG 61.161 63.158 0.00 0.00 0.00 5.03
30 31 1.079819 TGCACGTAGAAGCTGGCTC 60.080 57.895 0.00 0.00 33.80 4.70
31 32 1.079543 CTGCACGTAGAAGCTGGCT 60.080 57.895 0.00 0.00 33.80 4.75
32 33 2.103042 CCTGCACGTAGAAGCTGGC 61.103 63.158 8.27 0.00 41.54 4.85
33 34 2.103042 GCCTGCACGTAGAAGCTGG 61.103 63.158 14.70 14.70 46.52 4.85
34 35 2.103042 GGCCTGCACGTAGAAGCTG 61.103 63.158 0.00 0.00 33.80 4.24
35 36 2.266055 GGCCTGCACGTAGAAGCT 59.734 61.111 0.00 0.00 33.80 3.74
36 37 2.047274 TGGCCTGCACGTAGAAGC 60.047 61.111 3.32 0.00 0.00 3.86
37 38 0.737715 GTCTGGCCTGCACGTAGAAG 60.738 60.000 3.32 0.00 0.00 2.85
38 39 1.292223 GTCTGGCCTGCACGTAGAA 59.708 57.895 3.32 0.00 0.00 2.10
39 40 1.468506 TTGTCTGGCCTGCACGTAGA 61.469 55.000 3.32 0.00 0.00 2.59
40 41 1.005037 TTGTCTGGCCTGCACGTAG 60.005 57.895 3.32 0.00 0.00 3.51
41 42 1.301401 GTTGTCTGGCCTGCACGTA 60.301 57.895 3.32 0.00 0.00 3.57
42 43 2.591715 GTTGTCTGGCCTGCACGT 60.592 61.111 3.32 0.00 0.00 4.49
43 44 2.186160 TTGTTGTCTGGCCTGCACG 61.186 57.895 3.32 0.00 0.00 5.34
44 45 1.103398 AGTTGTTGTCTGGCCTGCAC 61.103 55.000 3.32 4.83 0.00 4.57
45 46 1.102809 CAGTTGTTGTCTGGCCTGCA 61.103 55.000 3.32 3.30 0.00 4.41
46 47 0.819259 TCAGTTGTTGTCTGGCCTGC 60.819 55.000 3.32 0.30 34.15 4.85
47 48 1.233019 CTCAGTTGTTGTCTGGCCTG 58.767 55.000 3.32 2.92 34.15 4.85
48 49 0.839946 ACTCAGTTGTTGTCTGGCCT 59.160 50.000 3.32 0.00 34.15 5.19
49 50 2.143925 GTACTCAGTTGTTGTCTGGCC 58.856 52.381 0.00 0.00 34.15 5.36
50 51 3.113260 AGTACTCAGTTGTTGTCTGGC 57.887 47.619 0.00 0.00 34.15 4.85
51 52 4.686554 GCTAAGTACTCAGTTGTTGTCTGG 59.313 45.833 0.00 0.00 34.15 3.86
52 53 4.686554 GGCTAAGTACTCAGTTGTTGTCTG 59.313 45.833 0.00 0.00 0.00 3.51
53 54 4.262506 GGGCTAAGTACTCAGTTGTTGTCT 60.263 45.833 0.00 0.00 0.00 3.41
54 55 3.995048 GGGCTAAGTACTCAGTTGTTGTC 59.005 47.826 0.00 0.00 0.00 3.18
55 56 3.554337 CGGGCTAAGTACTCAGTTGTTGT 60.554 47.826 0.00 0.00 0.00 3.32
56 57 2.993899 CGGGCTAAGTACTCAGTTGTTG 59.006 50.000 0.00 0.00 0.00 3.33
57 58 2.612221 GCGGGCTAAGTACTCAGTTGTT 60.612 50.000 0.00 0.00 0.00 2.83
58 59 1.067071 GCGGGCTAAGTACTCAGTTGT 60.067 52.381 0.00 0.00 0.00 3.32
59 60 1.641577 GCGGGCTAAGTACTCAGTTG 58.358 55.000 0.00 0.00 0.00 3.16
60 61 0.535797 GGCGGGCTAAGTACTCAGTT 59.464 55.000 0.00 0.00 0.00 3.16
61 62 0.613853 TGGCGGGCTAAGTACTCAGT 60.614 55.000 2.38 0.00 0.00 3.41
62 63 0.535335 TTGGCGGGCTAAGTACTCAG 59.465 55.000 2.38 0.00 0.00 3.35
63 64 0.978151 TTTGGCGGGCTAAGTACTCA 59.022 50.000 2.38 0.00 0.00 3.41
64 65 1.066358 ACTTTGGCGGGCTAAGTACTC 60.066 52.381 24.91 0.00 30.75 2.59
65 66 0.981943 ACTTTGGCGGGCTAAGTACT 59.018 50.000 24.91 5.72 30.75 2.73
66 67 1.817357 AACTTTGGCGGGCTAAGTAC 58.183 50.000 25.95 0.00 32.17 2.73
67 68 2.156098 CAAACTTTGGCGGGCTAAGTA 58.844 47.619 25.95 0.00 32.17 2.24
68 69 0.958822 CAAACTTTGGCGGGCTAAGT 59.041 50.000 21.78 21.78 33.76 2.24
69 70 0.243636 CCAAACTTTGGCGGGCTAAG 59.756 55.000 20.60 20.60 45.17 2.18
70 71 2.346597 CCAAACTTTGGCGGGCTAA 58.653 52.632 7.63 0.06 45.17 3.09
71 72 4.089105 CCAAACTTTGGCGGGCTA 57.911 55.556 7.63 0.00 45.17 3.93
79 80 7.860872 GGTTGTATCAAGTCTAACCAAACTTTG 59.139 37.037 0.00 0.00 40.31 2.77
80 81 7.778382 AGGTTGTATCAAGTCTAACCAAACTTT 59.222 33.333 0.00 0.00 42.42 2.66
81 82 7.287810 AGGTTGTATCAAGTCTAACCAAACTT 58.712 34.615 0.00 0.00 42.42 2.66
82 83 6.838382 AGGTTGTATCAAGTCTAACCAAACT 58.162 36.000 0.00 0.00 42.42 2.66
83 84 7.118825 GGTAGGTTGTATCAAGTCTAACCAAAC 59.881 40.741 0.00 0.00 42.42 2.93
84 85 7.163441 GGTAGGTTGTATCAAGTCTAACCAAA 58.837 38.462 0.00 0.00 42.42 3.28
85 86 6.270463 TGGTAGGTTGTATCAAGTCTAACCAA 59.730 38.462 0.00 0.00 42.42 3.67
86 87 5.781306 TGGTAGGTTGTATCAAGTCTAACCA 59.219 40.000 0.00 0.00 42.42 3.67
87 88 6.290294 TGGTAGGTTGTATCAAGTCTAACC 57.710 41.667 0.00 0.00 40.76 2.85
88 89 7.658575 TGTTTGGTAGGTTGTATCAAGTCTAAC 59.341 37.037 0.00 0.00 0.00 2.34
89 90 7.658575 GTGTTTGGTAGGTTGTATCAAGTCTAA 59.341 37.037 0.00 0.00 0.00 2.10
90 91 7.156673 GTGTTTGGTAGGTTGTATCAAGTCTA 58.843 38.462 0.00 0.00 0.00 2.59
91 92 5.995897 GTGTTTGGTAGGTTGTATCAAGTCT 59.004 40.000 0.00 0.00 0.00 3.24
92 93 5.107220 CGTGTTTGGTAGGTTGTATCAAGTC 60.107 44.000 0.00 0.00 0.00 3.01
93 94 4.753107 CGTGTTTGGTAGGTTGTATCAAGT 59.247 41.667 0.00 0.00 0.00 3.16
94 95 4.753107 ACGTGTTTGGTAGGTTGTATCAAG 59.247 41.667 0.00 0.00 0.00 3.02
95 96 4.706035 ACGTGTTTGGTAGGTTGTATCAA 58.294 39.130 0.00 0.00 0.00 2.57
96 97 4.309099 GACGTGTTTGGTAGGTTGTATCA 58.691 43.478 0.00 0.00 0.00 2.15
97 98 3.681417 GGACGTGTTTGGTAGGTTGTATC 59.319 47.826 0.00 0.00 0.00 2.24
98 99 3.557686 GGGACGTGTTTGGTAGGTTGTAT 60.558 47.826 0.00 0.00 0.00 2.29
99 100 2.224257 GGGACGTGTTTGGTAGGTTGTA 60.224 50.000 0.00 0.00 0.00 2.41
100 101 1.475571 GGGACGTGTTTGGTAGGTTGT 60.476 52.381 0.00 0.00 0.00 3.32
101 102 1.202722 AGGGACGTGTTTGGTAGGTTG 60.203 52.381 0.00 0.00 0.00 3.77
102 103 1.134228 AGGGACGTGTTTGGTAGGTT 58.866 50.000 0.00 0.00 0.00 3.50
103 104 1.897802 CTAGGGACGTGTTTGGTAGGT 59.102 52.381 0.00 0.00 0.00 3.08
104 105 1.897802 ACTAGGGACGTGTTTGGTAGG 59.102 52.381 0.00 0.00 0.00 3.18
105 106 2.559668 TCACTAGGGACGTGTTTGGTAG 59.440 50.000 0.00 0.00 34.14 3.18
106 107 2.596346 TCACTAGGGACGTGTTTGGTA 58.404 47.619 0.00 0.00 34.14 3.25
107 108 1.416243 TCACTAGGGACGTGTTTGGT 58.584 50.000 0.00 0.00 34.14 3.67
108 109 2.762535 ATCACTAGGGACGTGTTTGG 57.237 50.000 0.00 0.00 34.14 3.28
109 110 3.930848 GGTAATCACTAGGGACGTGTTTG 59.069 47.826 0.00 0.00 34.14 2.93
110 111 3.579586 TGGTAATCACTAGGGACGTGTTT 59.420 43.478 0.00 0.00 34.14 2.83
111 112 3.167485 TGGTAATCACTAGGGACGTGTT 58.833 45.455 0.00 0.00 34.14 3.32
112 113 2.811410 TGGTAATCACTAGGGACGTGT 58.189 47.619 0.00 0.00 34.14 4.49
113 114 3.880047 TTGGTAATCACTAGGGACGTG 57.120 47.619 0.00 0.00 0.00 4.49
114 115 3.836562 AGTTTGGTAATCACTAGGGACGT 59.163 43.478 0.00 0.00 0.00 4.34
115 116 4.467198 AGTTTGGTAATCACTAGGGACG 57.533 45.455 0.00 0.00 0.00 4.79
116 117 6.489022 ACAAAAGTTTGGTAATCACTAGGGAC 59.511 38.462 0.00 0.00 42.34 4.46
117 118 6.607019 ACAAAAGTTTGGTAATCACTAGGGA 58.393 36.000 0.00 0.00 42.34 4.20
118 119 6.072119 GGACAAAAGTTTGGTAATCACTAGGG 60.072 42.308 8.55 0.00 42.34 3.53
119 120 6.715264 AGGACAAAAGTTTGGTAATCACTAGG 59.285 38.462 8.55 0.00 42.34 3.02
120 121 7.661847 AGAGGACAAAAGTTTGGTAATCACTAG 59.338 37.037 8.55 0.00 42.34 2.57
121 122 7.444183 CAGAGGACAAAAGTTTGGTAATCACTA 59.556 37.037 8.55 0.00 42.34 2.74
122 123 6.263168 CAGAGGACAAAAGTTTGGTAATCACT 59.737 38.462 8.55 0.00 42.34 3.41
123 124 6.039382 ACAGAGGACAAAAGTTTGGTAATCAC 59.961 38.462 8.55 0.00 42.34 3.06
124 125 6.126409 ACAGAGGACAAAAGTTTGGTAATCA 58.874 36.000 8.55 0.00 42.34 2.57
125 126 6.635030 ACAGAGGACAAAAGTTTGGTAATC 57.365 37.500 8.55 0.00 42.34 1.75
126 127 8.706322 ATAACAGAGGACAAAAGTTTGGTAAT 57.294 30.769 8.55 0.00 42.34 1.89
127 128 7.776030 TGATAACAGAGGACAAAAGTTTGGTAA 59.224 33.333 8.55 0.00 42.34 2.85
128 129 7.284074 TGATAACAGAGGACAAAAGTTTGGTA 58.716 34.615 8.55 0.00 42.34 3.25
129 130 6.126409 TGATAACAGAGGACAAAAGTTTGGT 58.874 36.000 8.55 0.00 42.34 3.67
130 131 6.263168 ACTGATAACAGAGGACAAAAGTTTGG 59.737 38.462 7.05 0.00 46.03 3.28
131 132 7.264373 ACTGATAACAGAGGACAAAAGTTTG 57.736 36.000 7.05 2.22 46.03 2.93
132 133 7.881775 AACTGATAACAGAGGACAAAAGTTT 57.118 32.000 7.05 0.00 46.03 2.66
133 134 7.254795 CGAAACTGATAACAGAGGACAAAAGTT 60.255 37.037 7.05 0.00 46.03 2.66
134 135 6.202954 CGAAACTGATAACAGAGGACAAAAGT 59.797 38.462 7.05 0.00 46.03 2.66
135 136 6.347725 CCGAAACTGATAACAGAGGACAAAAG 60.348 42.308 7.05 0.00 46.03 2.27
136 137 5.468746 CCGAAACTGATAACAGAGGACAAAA 59.531 40.000 7.05 0.00 46.03 2.44
137 138 4.994852 CCGAAACTGATAACAGAGGACAAA 59.005 41.667 7.05 0.00 46.03 2.83
138 139 4.566004 CCGAAACTGATAACAGAGGACAA 58.434 43.478 7.05 0.00 46.03 3.18
139 140 3.616560 GCCGAAACTGATAACAGAGGACA 60.617 47.826 7.05 0.00 46.03 4.02
140 141 2.930682 GCCGAAACTGATAACAGAGGAC 59.069 50.000 7.05 0.00 46.03 3.85
141 142 2.565391 TGCCGAAACTGATAACAGAGGA 59.435 45.455 7.05 0.00 46.03 3.71
142 143 2.972625 TGCCGAAACTGATAACAGAGG 58.027 47.619 7.05 5.77 46.03 3.69
143 144 5.356882 TTTTGCCGAAACTGATAACAGAG 57.643 39.130 7.05 0.00 46.03 3.35
144 145 5.759506 TTTTTGCCGAAACTGATAACAGA 57.240 34.783 7.05 0.00 46.03 3.41
166 167 6.313658 GCAAAAGAGTTCTCACACCAATTTTT 59.686 34.615 2.64 0.00 0.00 1.94
167 168 5.812127 GCAAAAGAGTTCTCACACCAATTTT 59.188 36.000 2.64 0.00 0.00 1.82
168 169 5.351458 GCAAAAGAGTTCTCACACCAATTT 58.649 37.500 2.64 0.00 0.00 1.82
169 170 4.202151 GGCAAAAGAGTTCTCACACCAATT 60.202 41.667 2.64 0.00 0.00 2.32
170 171 3.319122 GGCAAAAGAGTTCTCACACCAAT 59.681 43.478 2.64 0.00 0.00 3.16
171 172 2.687935 GGCAAAAGAGTTCTCACACCAA 59.312 45.455 2.64 0.00 0.00 3.67
172 173 2.297701 GGCAAAAGAGTTCTCACACCA 58.702 47.619 2.64 0.00 0.00 4.17
173 174 2.033424 GTGGCAAAAGAGTTCTCACACC 59.967 50.000 0.00 0.00 0.00 4.16
174 175 2.033424 GGTGGCAAAAGAGTTCTCACAC 59.967 50.000 0.00 0.00 0.00 3.82
175 176 2.297701 GGTGGCAAAAGAGTTCTCACA 58.702 47.619 0.00 0.00 0.00 3.58
176 177 2.291741 CTGGTGGCAAAAGAGTTCTCAC 59.708 50.000 0.00 0.00 0.00 3.51
177 178 2.575532 CTGGTGGCAAAAGAGTTCTCA 58.424 47.619 0.00 0.00 0.00 3.27
178 179 1.882623 CCTGGTGGCAAAAGAGTTCTC 59.117 52.381 0.00 0.00 0.00 2.87
179 180 1.215423 ACCTGGTGGCAAAAGAGTTCT 59.785 47.619 0.00 0.00 36.63 3.01
180 181 1.692411 ACCTGGTGGCAAAAGAGTTC 58.308 50.000 0.00 0.00 36.63 3.01
181 182 2.159179 AACCTGGTGGCAAAAGAGTT 57.841 45.000 0.00 0.00 36.63 3.01
182 183 2.031870 GAAACCTGGTGGCAAAAGAGT 58.968 47.619 0.00 0.00 36.63 3.24
183 184 1.341209 GGAAACCTGGTGGCAAAAGAG 59.659 52.381 0.00 0.00 36.63 2.85
184 185 1.063266 AGGAAACCTGGTGGCAAAAGA 60.063 47.619 0.00 0.00 36.63 2.52
185 186 1.413118 AGGAAACCTGGTGGCAAAAG 58.587 50.000 0.00 0.00 36.63 2.27
186 187 1.872773 AAGGAAACCTGGTGGCAAAA 58.127 45.000 0.00 0.00 36.63 2.44
187 188 1.872773 AAAGGAAACCTGGTGGCAAA 58.127 45.000 0.00 0.00 36.63 3.68
188 189 1.872773 AAAAGGAAACCTGGTGGCAA 58.127 45.000 0.00 0.00 36.63 4.52
189 190 2.757894 TAAAAGGAAACCTGGTGGCA 57.242 45.000 0.00 0.00 36.63 4.92
190 191 3.576550 TGAATAAAAGGAAACCTGGTGGC 59.423 43.478 0.00 0.00 36.63 5.01
191 192 5.245977 ACATGAATAAAAGGAAACCTGGTGG 59.754 40.000 0.00 0.00 32.13 4.61
195 196 7.452880 TCAGACATGAATAAAAGGAAACCTG 57.547 36.000 0.00 0.00 29.50 4.00
201 202 5.066893 GCAGCATCAGACATGAATAAAAGGA 59.933 40.000 0.00 0.00 39.39 3.36
202 203 5.279384 GCAGCATCAGACATGAATAAAAGG 58.721 41.667 0.00 0.00 39.39 3.11
229 230 5.012768 ACCAATCTTTCCTAGTTCGGAGAAA 59.987 40.000 0.00 0.00 45.90 2.52
232 233 4.184629 CACCAATCTTTCCTAGTTCGGAG 58.815 47.826 0.00 0.00 33.89 4.63
254 255 2.561478 TTTAGAGTGACCACCCTTGC 57.439 50.000 0.00 0.00 0.00 4.01
257 258 4.168101 TCAGAATTTAGAGTGACCACCCT 58.832 43.478 0.00 0.00 0.00 4.34
259 260 4.878397 CCATCAGAATTTAGAGTGACCACC 59.122 45.833 0.00 0.00 0.00 4.61
266 267 7.170965 ACACATTGACCATCAGAATTTAGAGT 58.829 34.615 0.00 0.00 0.00 3.24
288 289 0.383949 TTCTCGGCAGGCAAAAACAC 59.616 50.000 0.00 0.00 0.00 3.32
293 294 1.177895 TTGCATTCTCGGCAGGCAAA 61.178 50.000 0.00 0.00 43.05 3.68
310 319 1.542915 CCAACTCAGGAACATGCCTTG 59.457 52.381 0.00 0.00 35.66 3.61
314 323 1.885871 GGCCAACTCAGGAACATGC 59.114 57.895 0.00 0.00 0.00 4.06
345 354 0.108520 AGATAAACCGCTCGCCGAAA 60.109 50.000 0.00 0.00 40.02 3.46
350 359 0.247695 GTGCAAGATAAACCGCTCGC 60.248 55.000 0.00 0.00 0.00 5.03
356 365 4.156739 CCTTCCTCTTGTGCAAGATAAACC 59.843 45.833 14.11 0.00 45.40 3.27
370 379 3.983821 ACCGAGTCTTATCCTTCCTCTT 58.016 45.455 0.00 0.00 0.00 2.85
372 381 3.447944 ACAACCGAGTCTTATCCTTCCTC 59.552 47.826 0.00 0.00 0.00 3.71
392 401 0.391661 GGCAATCAGAGGCGAAGACA 60.392 55.000 0.00 0.00 39.87 3.41
404 413 1.272592 TGCATCAGGGAAAGGCAATCA 60.273 47.619 0.00 0.00 0.00 2.57
425 434 1.279271 CGGACAGGAGAATTGACCCTT 59.721 52.381 0.00 0.00 0.00 3.95
426 435 0.905357 CGGACAGGAGAATTGACCCT 59.095 55.000 0.00 0.00 0.00 4.34
446 455 1.456705 GCCCACCAACAAAGGGTCA 60.457 57.895 0.00 0.00 44.69 4.02
451 460 0.670162 CACTGAGCCCACCAACAAAG 59.330 55.000 0.00 0.00 0.00 2.77
454 463 2.382770 ACCACTGAGCCCACCAACA 61.383 57.895 0.00 0.00 0.00 3.33
455 464 1.898574 CACCACTGAGCCCACCAAC 60.899 63.158 0.00 0.00 0.00 3.77
456 465 2.337879 GACACCACTGAGCCCACCAA 62.338 60.000 0.00 0.00 0.00 3.67
458 467 2.032681 GACACCACTGAGCCCACC 59.967 66.667 0.00 0.00 0.00 4.61
483 492 6.621316 AGAGATACTCGACACGTCATATTT 57.379 37.500 0.00 0.00 35.36 1.40
486 495 5.234543 CAGAAGAGATACTCGACACGTCATA 59.765 44.000 0.00 0.00 35.36 2.15
490 499 3.125487 CACAGAAGAGATACTCGACACGT 59.875 47.826 0.00 0.00 35.36 4.49
493 502 4.519350 ACAACACAGAAGAGATACTCGACA 59.481 41.667 0.00 0.00 35.36 4.35
500 509 5.610398 TGCTTGAACAACACAGAAGAGATA 58.390 37.500 0.00 0.00 0.00 1.98
509 518 5.211454 CGACAAATATGCTTGAACAACACA 58.789 37.500 0.00 0.00 0.00 3.72
513 522 3.254411 TGCCGACAAATATGCTTGAACAA 59.746 39.130 0.00 0.00 0.00 2.83
528 537 3.682858 GCTAAAACATTAGACTGCCGACA 59.317 43.478 0.00 0.00 0.00 4.35
533 542 6.668541 TCATGAGCTAAAACATTAGACTGC 57.331 37.500 0.00 0.00 0.00 4.40
546 556 9.944376 ACAAGACTTAGTTAAATCATGAGCTAA 57.056 29.630 0.09 0.00 0.00 3.09
561 571 7.122353 ACGACCATAGTTCATACAAGACTTAGT 59.878 37.037 0.00 0.00 0.00 2.24
573 583 6.038825 TGAAAAACACAACGACCATAGTTCAT 59.961 34.615 0.00 0.00 0.00 2.57
583 593 6.134061 GGAGTAGAATGAAAAACACAACGAC 58.866 40.000 0.00 0.00 0.00 4.34
585 595 5.050634 TCGGAGTAGAATGAAAAACACAACG 60.051 40.000 0.00 0.00 0.00 4.10
601 614 1.470979 CCCGGACACAAATCGGAGTAG 60.471 57.143 0.73 0.00 45.96 2.57
609 622 2.838202 ACATAGTCTCCCGGACACAAAT 59.162 45.455 0.73 0.00 46.72 2.32
615 628 4.826183 ACATAGTTACATAGTCTCCCGGAC 59.174 45.833 0.73 0.00 44.80 4.79
643 658 1.202154 ACGTCGGCTCTTCATTAGTCG 60.202 52.381 0.00 0.00 43.26 4.18
646 661 3.927142 AGAAAACGTCGGCTCTTCATTAG 59.073 43.478 0.00 0.00 0.00 1.73
651 666 4.720530 TTTTAGAAAACGTCGGCTCTTC 57.279 40.909 0.00 0.00 0.00 2.87
684 699 2.028130 GTGGTGTTGTTGGATTCCACA 58.972 47.619 4.45 4.47 43.03 4.17
685 700 1.001815 CGTGGTGTTGTTGGATTCCAC 60.002 52.381 4.45 1.74 41.00 4.02
691 706 2.517402 GGCCGTGGTGTTGTTGGA 60.517 61.111 0.00 0.00 0.00 3.53
810 826 2.980233 GCCTGGGTGTCAGTGTGC 60.980 66.667 0.00 0.00 41.83 4.57
814 830 3.170672 TGCTGCCTGGGTGTCAGT 61.171 61.111 0.00 0.00 41.83 3.41
843 859 2.401766 CCACATGCTCAGTTCCGCC 61.402 63.158 0.00 0.00 0.00 6.13
852 868 2.512515 GCTCCCGACCACATGCTC 60.513 66.667 0.00 0.00 0.00 4.26
1017 1033 3.691342 TCCGGCTTCACCAGGTCG 61.691 66.667 0.00 0.00 39.03 4.79
1052 1068 3.220999 TTGTGCTCCTCCACGTCGG 62.221 63.158 0.00 0.00 38.55 4.79
1233 1249 2.125673 AGGAACGGCGATCGGTTG 60.126 61.111 16.62 0.00 39.92 3.77
1240 1256 2.482296 GAAACGGAGAGGAACGGCGA 62.482 60.000 16.62 0.00 0.00 5.54
1241 1257 2.048503 AAACGGAGAGGAACGGCG 60.049 61.111 4.80 4.80 0.00 6.46
1242 1258 1.005394 TGAAACGGAGAGGAACGGC 60.005 57.895 0.00 0.00 0.00 5.68
1243 1259 0.669625 GGTGAAACGGAGAGGAACGG 60.670 60.000 0.00 0.00 38.12 4.44
1244 1260 1.007336 CGGTGAAACGGAGAGGAACG 61.007 60.000 0.00 0.00 39.89 3.95
1245 1261 1.289800 GCGGTGAAACGGAGAGGAAC 61.290 60.000 0.00 0.00 39.89 3.62
1247 1263 2.654877 GCGGTGAAACGGAGAGGA 59.345 61.111 0.00 0.00 39.89 3.71
1249 1265 1.079127 ATGGCGGTGAAACGGAGAG 60.079 57.895 0.00 0.00 39.89 3.20
1251 1267 0.953471 TTCATGGCGGTGAAACGGAG 60.953 55.000 3.05 0.00 39.89 4.63
1255 1271 2.262572 GACATTCATGGCGGTGAAAC 57.737 50.000 8.84 2.13 41.09 2.78
1268 1284 2.159310 AGTAGCAGAGCAGACGACATTC 60.159 50.000 0.00 0.00 0.00 2.67
1287 1303 2.949644 GCACCCAAGTCAGTTGTTAAGT 59.050 45.455 0.00 0.00 33.87 2.24
1288 1304 2.032030 CGCACCCAAGTCAGTTGTTAAG 60.032 50.000 0.00 0.00 33.87 1.85
1289 1305 1.944024 CGCACCCAAGTCAGTTGTTAA 59.056 47.619 0.00 0.00 33.87 2.01
1290 1306 1.588674 CGCACCCAAGTCAGTTGTTA 58.411 50.000 0.00 0.00 33.87 2.41
1291 1307 1.101049 CCGCACCCAAGTCAGTTGTT 61.101 55.000 0.00 0.00 33.87 2.83
1292 1308 1.525995 CCGCACCCAAGTCAGTTGT 60.526 57.895 0.00 0.00 33.87 3.32
1293 1309 1.525995 ACCGCACCCAAGTCAGTTG 60.526 57.895 0.00 0.00 35.71 3.16
1294 1310 1.525995 CACCGCACCCAAGTCAGTT 60.526 57.895 0.00 0.00 0.00 3.16
1295 1311 2.111043 CACCGCACCCAAGTCAGT 59.889 61.111 0.00 0.00 0.00 3.41
1439 1460 2.420827 CGAGAGCCTGAGAGAGACCTTA 60.421 54.545 0.00 0.00 0.00 2.69
1463 1484 2.177977 CGATGAGTAACGTGTGAGAGC 58.822 52.381 0.00 0.00 0.00 4.09
1505 1526 1.072348 CGAAACGAACACACGACAGAC 60.072 52.381 0.00 0.00 37.03 3.51
1506 1527 1.193644 CGAAACGAACACACGACAGA 58.806 50.000 0.00 0.00 37.03 3.41
1507 1528 0.918619 ACGAAACGAACACACGACAG 59.081 50.000 0.00 0.00 37.03 3.51
1508 1529 1.348276 AACGAAACGAACACACGACA 58.652 45.000 0.00 0.00 37.03 4.35
1513 1534 1.202087 CCTGCAAACGAAACGAACACA 60.202 47.619 0.00 0.00 0.00 3.72
1527 1548 0.823356 GCCTTGGACAGAACCTGCAA 60.823 55.000 0.00 0.00 34.37 4.08
1623 1644 4.081198 GTGAGAGTTCAGGTGGAGATTGAT 60.081 45.833 0.00 0.00 32.98 2.57
1655 1689 2.158957 ACACTCGTCTGTCATGGTTTGT 60.159 45.455 0.00 0.00 0.00 2.83
1658 1692 2.365617 AGAACACTCGTCTGTCATGGTT 59.634 45.455 0.00 0.00 0.00 3.67
1660 1694 2.230025 AGAGAACACTCGTCTGTCATGG 59.770 50.000 0.00 0.00 35.98 3.66
1662 1696 3.417101 AGAGAGAACACTCGTCTGTCAT 58.583 45.455 2.01 0.00 41.25 3.06
1663 1697 2.852449 AGAGAGAACACTCGTCTGTCA 58.148 47.619 2.01 0.00 41.25 3.58
1664 1698 3.003897 ACAAGAGAGAACACTCGTCTGTC 59.996 47.826 0.00 0.00 41.25 3.51
1665 1699 2.952978 ACAAGAGAGAACACTCGTCTGT 59.047 45.455 0.00 0.00 41.25 3.41
1666 1700 3.003793 TCACAAGAGAGAACACTCGTCTG 59.996 47.826 0.00 0.00 41.25 3.51
1667 1701 3.215151 TCACAAGAGAGAACACTCGTCT 58.785 45.455 0.00 0.00 41.25 4.18
1668 1702 3.627732 TCACAAGAGAGAACACTCGTC 57.372 47.619 0.00 0.00 41.25 4.20
1669 1703 4.038042 TCATTCACAAGAGAGAACACTCGT 59.962 41.667 0.00 0.00 41.25 4.18
1670 1704 4.384247 GTCATTCACAAGAGAGAACACTCG 59.616 45.833 0.00 0.00 41.25 4.18
1671 1705 5.537188 AGTCATTCACAAGAGAGAACACTC 58.463 41.667 0.00 0.00 37.19 3.51
1672 1706 5.543507 AGTCATTCACAAGAGAGAACACT 57.456 39.130 0.00 0.00 0.00 3.55
1673 1707 6.563010 CGAAAGTCATTCACAAGAGAGAACAC 60.563 42.308 0.00 0.00 37.96 3.32
1674 1708 5.463392 CGAAAGTCATTCACAAGAGAGAACA 59.537 40.000 0.00 0.00 37.96 3.18
1675 1709 5.692204 TCGAAAGTCATTCACAAGAGAGAAC 59.308 40.000 0.00 0.00 37.96 3.01
1676 1710 5.842907 TCGAAAGTCATTCACAAGAGAGAA 58.157 37.500 0.00 0.00 37.96 2.87
1677 1711 5.453567 TCGAAAGTCATTCACAAGAGAGA 57.546 39.130 0.00 0.00 37.96 3.10
1678 1712 4.091220 GCTCGAAAGTCATTCACAAGAGAG 59.909 45.833 0.00 0.00 37.96 3.20
1679 1713 3.990469 GCTCGAAAGTCATTCACAAGAGA 59.010 43.478 0.00 0.00 37.96 3.10
1680 1714 3.124297 GGCTCGAAAGTCATTCACAAGAG 59.876 47.826 0.00 0.00 37.96 2.85
1681 1715 3.067106 GGCTCGAAAGTCATTCACAAGA 58.933 45.455 0.00 0.00 37.96 3.02
1682 1716 2.159787 CGGCTCGAAAGTCATTCACAAG 60.160 50.000 0.00 0.00 37.96 3.16
1683 1717 1.798223 CGGCTCGAAAGTCATTCACAA 59.202 47.619 0.00 0.00 37.96 3.33
1691 1725 1.941325 ATCAATCCGGCTCGAAAGTC 58.059 50.000 0.00 0.00 0.00 3.01
1704 1738 7.262772 TGAATTTTCTCCTGCATCAATCAATC 58.737 34.615 0.00 0.00 0.00 2.67
1705 1739 7.177832 TGAATTTTCTCCTGCATCAATCAAT 57.822 32.000 0.00 0.00 0.00 2.57
1761 1795 3.838271 GCGTCCGGATCAGGCTCA 61.838 66.667 7.81 0.00 0.00 4.26
1805 1839 1.067250 GAGATGAGACGAGGCAGCC 59.933 63.158 1.84 1.84 0.00 4.85
1809 1843 1.008995 GCGAGAGATGAGACGAGGC 60.009 63.158 0.00 0.00 0.00 4.70
1855 1889 6.179756 TGTACATACATCATTGTCCTGCTTT 58.820 36.000 0.00 0.00 37.28 3.51
1859 1893 6.923508 ACGTATGTACATACATCATTGTCCTG 59.076 38.462 34.07 20.52 45.11 3.86
1901 1935 2.678336 CTCTTGTGGAATTAACCGAGCC 59.322 50.000 0.00 0.00 0.00 4.70
1925 1964 4.454161 TGAAAGGTGTTACACGATTGATGG 59.546 41.667 9.52 0.00 34.83 3.51
1960 1999 9.752961 TTGCATATATGATTTGATTTGTTGGAG 57.247 29.630 17.10 0.00 0.00 3.86
1987 2026 2.032860 ATCGGAGCCGCATGTAAGCT 62.033 55.000 3.59 6.04 40.24 3.74
1991 2030 0.313987 CTGTATCGGAGCCGCATGTA 59.686 55.000 3.59 0.00 39.59 2.29
1999 2038 2.017782 TGACTCTGTCTGTATCGGAGC 58.982 52.381 0.00 0.00 40.71 4.70
2011 2050 0.679640 CGAGGCCTCTCTGACTCTGT 60.680 60.000 29.73 0.00 37.86 3.41
2013 2052 0.393808 GTCGAGGCCTCTCTGACTCT 60.394 60.000 29.73 0.00 38.85 3.24
2014 2053 1.381165 GGTCGAGGCCTCTCTGACTC 61.381 65.000 29.73 17.87 40.24 3.36
2015 2054 1.379309 GGTCGAGGCCTCTCTGACT 60.379 63.158 29.73 0.00 40.24 3.41
2016 2055 1.379309 AGGTCGAGGCCTCTCTGAC 60.379 63.158 29.73 26.33 39.96 3.51
2017 2056 3.091694 AGGTCGAGGCCTCTCTGA 58.908 61.111 29.73 17.30 37.86 3.27
2033 2072 1.550976 GTAGTGGACCTGAACCCTGAG 59.449 57.143 0.00 0.00 0.00 3.35
2052 2091 1.336755 GAACATTTTGGCGACCTGTGT 59.663 47.619 0.00 0.00 0.00 3.72
2100 2161 2.187163 GCTACCCGTTCCTGCTCC 59.813 66.667 0.00 0.00 0.00 4.70
2278 2339 3.716006 CTGTTCCACACCGCGCTG 61.716 66.667 5.56 0.00 0.00 5.18
2691 2752 0.596083 GGTGCTCATCGATCAGACCG 60.596 60.000 0.00 0.00 0.00 4.79
2726 2787 1.340405 ACTACCAATGGCTGAGCAAGG 60.340 52.381 6.82 4.42 0.00 3.61
2742 2803 3.777925 CGCCTGCACACGCACTAC 61.778 66.667 0.00 0.00 45.36 2.73
2756 2817 0.889186 AACAATCTCACACACCCGCC 60.889 55.000 0.00 0.00 0.00 6.13
2763 2824 4.278170 TCATCAAACCCAACAATCTCACAC 59.722 41.667 0.00 0.00 0.00 3.82
2764 2825 4.278170 GTCATCAAACCCAACAATCTCACA 59.722 41.667 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.