Multiple sequence alignment - TraesCS3D01G402200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G402200 chr3D 100.000 3670 0 0 1 3670 516670239 516673908 0.000000e+00 6778.0
1 TraesCS3D01G402200 chr3D 96.568 845 28 1 1849 2692 516856631 516857475 0.000000e+00 1399.0
2 TraesCS3D01G402200 chr3D 89.559 1044 72 17 758 1797 516855438 516856448 0.000000e+00 1290.0
3 TraesCS3D01G402200 chr3D 87.387 111 14 0 3560 3670 291887369 291887259 1.070000e-25 128.0
4 TraesCS3D01G402200 chr3D 77.876 113 23 2 3421 3532 63455258 63455369 6.580000e-08 69.4
5 TraesCS3D01G402200 chr3B 91.874 2941 171 29 770 3670 680677203 680674291 0.000000e+00 4045.0
6 TraesCS3D01G402200 chr3B 93.681 2073 94 18 735 2796 680733108 680731062 0.000000e+00 3068.0
7 TraesCS3D01G402200 chr3B 90.923 1972 115 34 756 2695 680478279 680476340 0.000000e+00 2591.0
8 TraesCS3D01G402200 chr3B 89.093 761 33 21 1 737 680733874 680733140 0.000000e+00 900.0
9 TraesCS3D01G402200 chr3B 78.261 414 82 6 3261 3668 37640455 37640044 3.640000e-65 259.0
10 TraesCS3D01G402200 chr3B 94.203 69 4 0 3062 3130 99471088 99471020 5.010000e-19 106.0
11 TraesCS3D01G402200 chr3B 76.471 204 35 11 3338 3534 103038273 103038470 8.390000e-17 99.0
12 TraesCS3D01G402200 chr3B 93.333 45 2 1 1 45 680782479 680782436 8.510000e-07 65.8
13 TraesCS3D01G402200 chr3A 91.752 2934 172 36 758 3670 651961968 651964852 0.000000e+00 4013.0
14 TraesCS3D01G402200 chr3A 94.975 2448 108 7 1235 3670 651648965 651651409 0.000000e+00 3825.0
15 TraesCS3D01G402200 chr3A 93.423 1490 74 6 1205 2692 651996475 651997942 0.000000e+00 2187.0
16 TraesCS3D01G402200 chr3A 86.623 770 50 30 1 744 651647713 651648455 0.000000e+00 802.0
17 TraesCS3D01G402200 chr3A 88.579 394 32 7 758 1145 651996065 651996451 2.000000e-127 466.0
18 TraesCS3D01G402200 chr3A 86.420 405 29 8 749 1137 651648514 651648908 1.580000e-113 420.0
19 TraesCS3D01G402200 chr7D 91.108 1462 121 5 1236 2692 502231626 502233083 0.000000e+00 1971.0
20 TraesCS3D01G402200 chr7D 90.066 151 13 2 989 1138 502231420 502231569 1.040000e-45 195.0
21 TraesCS3D01G402200 chr7D 84.828 145 16 4 2914 3052 133328835 133328979 1.370000e-29 141.0
22 TraesCS3D01G402200 chr1A 85.452 763 106 4 1894 2652 460281706 460282467 0.000000e+00 789.0
23 TraesCS3D01G402200 chr1A 93.927 247 14 1 1238 1483 460280936 460281182 4.480000e-99 372.0
24 TraesCS3D01G402200 chr5D 82.331 532 92 2 1248 1778 192537909 192538439 9.290000e-126 460.0
25 TraesCS3D01G402200 chr5A 82.331 532 92 2 1248 1778 230453356 230453886 9.290000e-126 460.0
26 TraesCS3D01G402200 chr5B 81.989 533 92 4 1248 1778 197201369 197200839 2.010000e-122 449.0
27 TraesCS3D01G402200 chr5B 82.051 156 25 3 2902 3055 211063934 211064088 2.970000e-26 130.0
28 TraesCS3D01G402200 chr5B 87.500 56 6 1 3417 3471 559563308 559563363 3.060000e-06 63.9
29 TraesCS3D01G402200 chr4B 81.022 548 87 10 1248 1779 106492769 106492223 1.580000e-113 420.0
30 TraesCS3D01G402200 chr4B 86.232 138 19 0 3530 3667 25829686 25829549 2.280000e-32 150.0
31 TraesCS3D01G402200 chr4D 80.839 548 88 11 1248 1779 74160043 74159497 7.330000e-112 414.0
32 TraesCS3D01G402200 chr4D 76.793 237 42 12 3391 3620 16454493 16454723 1.790000e-23 121.0
33 TraesCS3D01G402200 chr1D 93.927 247 14 1 1238 1483 360467179 360467425 4.480000e-99 372.0
34 TraesCS3D01G402200 chr1D 93.056 72 5 0 3062 3133 487907311 487907240 5.010000e-19 106.0
35 TraesCS3D01G402200 chr6D 79.646 226 30 10 2915 3127 211566544 211566766 8.210000e-32 148.0
36 TraesCS3D01G402200 chr6D 93.846 65 4 0 3063 3127 151511165 151511229 8.390000e-17 99.0
37 TraesCS3D01G402200 chr7B 92.391 92 7 0 3579 3670 289229550 289229641 8.270000e-27 132.0
38 TraesCS3D01G402200 chr7B 83.117 154 15 6 2914 3057 21662540 21662692 2.970000e-26 130.0
39 TraesCS3D01G402200 chr2A 83.099 142 24 0 2914 3055 701014924 701014783 2.970000e-26 130.0
40 TraesCS3D01G402200 chr2A 93.939 66 4 0 3062 3127 391353245 391353310 2.330000e-17 100.0
41 TraesCS3D01G402200 chr1B 82.781 151 21 2 2911 3057 478577873 478578022 2.970000e-26 130.0
42 TraesCS3D01G402200 chr1B 92.754 69 4 1 3062 3130 287703864 287703797 8.390000e-17 99.0
43 TraesCS3D01G402200 chr2D 77.083 240 43 8 3439 3670 58849633 58849398 1.070000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G402200 chr3D 516670239 516673908 3669 False 6778.000000 6778 100.000000 1 3670 1 chr3D.!!$F2 3669
1 TraesCS3D01G402200 chr3D 516855438 516857475 2037 False 1344.500000 1399 93.063500 758 2692 2 chr3D.!!$F3 1934
2 TraesCS3D01G402200 chr3B 680674291 680677203 2912 True 4045.000000 4045 91.874000 770 3670 1 chr3B.!!$R4 2900
3 TraesCS3D01G402200 chr3B 680476340 680478279 1939 True 2591.000000 2591 90.923000 756 2695 1 chr3B.!!$R3 1939
4 TraesCS3D01G402200 chr3B 680731062 680733874 2812 True 1984.000000 3068 91.387000 1 2796 2 chr3B.!!$R6 2795
5 TraesCS3D01G402200 chr3A 651961968 651964852 2884 False 4013.000000 4013 91.752000 758 3670 1 chr3A.!!$F1 2912
6 TraesCS3D01G402200 chr3A 651647713 651651409 3696 False 1682.333333 3825 89.339333 1 3670 3 chr3A.!!$F2 3669
7 TraesCS3D01G402200 chr3A 651996065 651997942 1877 False 1326.500000 2187 91.001000 758 2692 2 chr3A.!!$F3 1934
8 TraesCS3D01G402200 chr7D 502231420 502233083 1663 False 1083.000000 1971 90.587000 989 2692 2 chr7D.!!$F2 1703
9 TraesCS3D01G402200 chr1A 460280936 460282467 1531 False 580.500000 789 89.689500 1238 2652 2 chr1A.!!$F1 1414
10 TraesCS3D01G402200 chr5D 192537909 192538439 530 False 460.000000 460 82.331000 1248 1778 1 chr5D.!!$F1 530
11 TraesCS3D01G402200 chr5A 230453356 230453886 530 False 460.000000 460 82.331000 1248 1778 1 chr5A.!!$F1 530
12 TraesCS3D01G402200 chr5B 197200839 197201369 530 True 449.000000 449 81.989000 1248 1778 1 chr5B.!!$R1 530
13 TraesCS3D01G402200 chr4B 106492223 106492769 546 True 420.000000 420 81.022000 1248 1779 1 chr4B.!!$R2 531
14 TraesCS3D01G402200 chr4D 74159497 74160043 546 True 414.000000 414 80.839000 1248 1779 1 chr4D.!!$R1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
600 623 1.064357 GCTCCTTCTCGGAAGACTACG 59.936 57.143 13.28 0.0 42.53 3.51 F
1004 1110 0.671251 CCTAGAGACAGGTCGATGGC 59.329 60.000 0.00 0.0 34.09 4.40 F
1172 1287 0.674581 CATGGACTCATGGTGTGCGT 60.675 55.000 0.00 0.0 45.19 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2537 3082 1.005037 CCACTGCGTGCTCCACTTA 60.005 57.895 3.56 0.00 31.34 2.24 R
2615 3160 0.538057 ATTTGATGCCGGCGATGGAT 60.538 50.000 23.90 9.28 0.00 3.41 R
3000 3574 1.251527 GCTCAGTCCCTCGGAAGTGA 61.252 60.000 0.00 0.00 31.38 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 1.153349 GACGGAGAGCCATCCAACC 60.153 63.158 5.70 0.00 39.53 3.77
45 46 2.190578 GGAGAGCCATCCAACCCG 59.809 66.667 0.00 0.00 39.34 5.28
160 162 2.432628 GCCGCACGTACAGCTCTT 60.433 61.111 5.84 0.00 0.00 2.85
171 173 5.749109 CACGTACAGCTCTTCCCTATAAAAG 59.251 44.000 0.00 0.00 0.00 2.27
194 196 4.492160 GCCGGTCGATGCAGACGA 62.492 66.667 13.37 13.37 41.81 4.20
204 206 3.414700 GCAGACGAAGCACCACCG 61.415 66.667 0.00 0.00 0.00 4.94
379 381 5.265350 AGCTAGCTAGTTACTTAGTTGCC 57.735 43.478 17.69 0.68 0.00 4.52
411 413 6.183360 GCTGCGATCTTATCATCACTTATCAC 60.183 42.308 0.00 0.00 0.00 3.06
520 522 2.976882 GGTGGTGGGCTTAGGTATGATA 59.023 50.000 0.00 0.00 0.00 2.15
545 568 1.301244 CGCCTGCTCTGTTGACTGT 60.301 57.895 0.00 0.00 0.00 3.55
600 623 1.064357 GCTCCTTCTCGGAAGACTACG 59.936 57.143 13.28 0.00 42.53 3.51
601 624 2.358015 CTCCTTCTCGGAAGACTACGT 58.642 52.381 13.28 0.00 42.53 3.57
602 625 3.529533 CTCCTTCTCGGAAGACTACGTA 58.470 50.000 13.28 0.00 42.53 3.57
603 626 3.265791 TCCTTCTCGGAAGACTACGTAC 58.734 50.000 13.28 0.00 39.40 3.67
682 705 1.264020 GCATGCGTCAACTCTGTTTCA 59.736 47.619 0.00 0.00 0.00 2.69
788 865 2.803956 CCTATAAATTGCACCGGTACCG 59.196 50.000 27.68 27.68 39.44 4.02
918 1020 1.165907 TGCACTGCACTTACTGTGGC 61.166 55.000 0.00 0.00 46.27 5.01
949 1052 4.806247 CCTCTTAATTAGTTCTCACCTGCG 59.194 45.833 0.00 0.00 0.00 5.18
964 1067 2.330041 GCGCGCCTACTCTCTCTC 59.670 66.667 23.24 0.00 0.00 3.20
993 1099 2.418884 GGCAGCAGTTAACCCTAGAGAC 60.419 54.545 0.88 0.00 0.00 3.36
1004 1110 0.671251 CCTAGAGACAGGTCGATGGC 59.329 60.000 0.00 0.00 34.09 4.40
1139 1247 0.717784 GGTACGTAAAACTCCTGCGC 59.282 55.000 0.00 0.00 0.00 6.09
1145 1260 2.284417 CGTAAAACTCCTGCGCCTTATC 59.716 50.000 4.18 0.00 0.00 1.75
1146 1261 2.789409 AAAACTCCTGCGCCTTATCT 57.211 45.000 4.18 0.00 0.00 1.98
1147 1262 2.317530 AAACTCCTGCGCCTTATCTC 57.682 50.000 4.18 0.00 0.00 2.75
1150 1265 1.035923 CTCCTGCGCCTTATCTCTCA 58.964 55.000 4.18 0.00 0.00 3.27
1152 1267 0.749649 CCTGCGCCTTATCTCTCACT 59.250 55.000 4.18 0.00 0.00 3.41
1153 1268 1.269517 CCTGCGCCTTATCTCTCACTC 60.270 57.143 4.18 0.00 0.00 3.51
1154 1269 1.406898 CTGCGCCTTATCTCTCACTCA 59.593 52.381 4.18 0.00 0.00 3.41
1155 1270 2.034878 TGCGCCTTATCTCTCACTCAT 58.965 47.619 4.18 0.00 0.00 2.90
1156 1271 2.223900 TGCGCCTTATCTCTCACTCATG 60.224 50.000 4.18 0.00 0.00 3.07
1157 1272 2.865670 GCGCCTTATCTCTCACTCATGG 60.866 54.545 0.00 0.00 0.00 3.66
1158 1273 2.625314 CGCCTTATCTCTCACTCATGGA 59.375 50.000 0.00 0.00 0.00 3.41
1159 1274 3.551863 CGCCTTATCTCTCACTCATGGAC 60.552 52.174 0.00 0.00 0.00 4.02
1160 1275 3.640967 GCCTTATCTCTCACTCATGGACT 59.359 47.826 0.00 0.00 0.00 3.85
1161 1276 4.261994 GCCTTATCTCTCACTCATGGACTC 60.262 50.000 0.00 0.00 0.00 3.36
1162 1277 4.892345 CCTTATCTCTCACTCATGGACTCA 59.108 45.833 0.00 0.00 0.00 3.41
1163 1278 5.539574 CCTTATCTCTCACTCATGGACTCAT 59.460 44.000 0.00 0.00 0.00 2.90
1171 1286 2.092374 CATGGACTCATGGTGTGCG 58.908 57.895 0.00 0.00 45.19 5.34
1172 1287 0.674581 CATGGACTCATGGTGTGCGT 60.675 55.000 0.00 0.00 45.19 5.24
1202 1319 3.200685 CGTACAGCGTACTTAATTGCG 57.799 47.619 14.06 0.00 35.54 4.85
1203 1320 2.035176 CGTACAGCGTACTTAATTGCGG 60.035 50.000 14.06 0.00 35.54 5.69
1204 1321 2.088950 ACAGCGTACTTAATTGCGGT 57.911 45.000 2.37 2.37 35.39 5.68
1205 1322 2.435685 CAGCGTACTTAATTGCGGTG 57.564 50.000 17.77 17.77 44.17 4.94
1243 1410 2.638354 TACGTACTGGCCGGTGTGG 61.638 63.158 28.18 17.45 42.50 4.17
1711 2100 1.095600 CCGACTTCGACCAGATCTCA 58.904 55.000 0.00 0.00 43.02 3.27
2537 3082 1.073897 GGTGCAGAAGAAGGTGCCT 59.926 57.895 0.00 0.00 39.04 4.75
2692 3238 2.362047 CGTTGACGATCGTGCACGT 61.362 57.895 35.74 24.06 45.32 4.49
2958 3532 3.490896 CAGACGGTCATACATATGCACAC 59.509 47.826 11.27 0.00 33.76 3.82
3000 3574 1.902508 CGCACATCCTACCCCTATGAT 59.097 52.381 0.00 0.00 0.00 2.45
3004 3578 4.163427 CACATCCTACCCCTATGATCACT 58.837 47.826 0.00 0.00 0.00 3.41
3174 3749 4.222124 ACATTAACTGGGTGATGGAGAC 57.778 45.455 0.00 0.00 0.00 3.36
3175 3750 3.198068 CATTAACTGGGTGATGGAGACG 58.802 50.000 0.00 0.00 0.00 4.18
3228 3808 1.154205 GCATCTCCAACGATGACCCG 61.154 60.000 5.07 0.00 42.63 5.28
3283 3868 0.976073 CAGTCCGGGGACACTGGTAT 60.976 60.000 19.38 0.00 46.76 2.73
3359 3944 7.395190 TTGAAATTCAAATCTGTCCGATCAT 57.605 32.000 5.87 0.00 32.71 2.45
3434 4019 6.772716 ACTATCCATAGTTTTTACATGCCTGG 59.227 38.462 0.00 0.00 40.54 4.45
3453 4038 6.719370 TGCCTGGTCACAAAAGAATATAAGTT 59.281 34.615 0.00 0.00 0.00 2.66
3482 4067 6.848451 AGTCCGTGCGAAATATTGTATTTTT 58.152 32.000 0.00 0.00 0.00 1.94
3499 4084 0.251121 TTTTGCCCTGCTGGATCGAA 60.251 50.000 11.88 5.90 35.39 3.71
3515 4100 1.890489 TCGAAAATCCGAGACTCCACA 59.110 47.619 0.00 0.00 34.19 4.17
3527 4112 2.230025 AGACTCCACACTCAATCTGTCG 59.770 50.000 0.00 0.00 0.00 4.35
3528 4113 1.337260 ACTCCACACTCAATCTGTCGC 60.337 52.381 0.00 0.00 0.00 5.19
3558 4143 4.168291 GGCTGCCTCCTTCTCCGG 62.168 72.222 12.43 0.00 0.00 5.14
3573 4158 1.758514 CCGGCTCCAGCTCTTCCTA 60.759 63.158 0.00 0.00 41.70 2.94
3577 4162 0.179086 GCTCCAGCTCTTCCTACTGC 60.179 60.000 0.00 0.00 38.21 4.40
3578 4163 0.463620 CTCCAGCTCTTCCTACTGCC 59.536 60.000 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
160 162 1.766496 CGGCTGGGTCTTTTATAGGGA 59.234 52.381 0.00 0.00 0.00 4.20
282 284 2.381445 AGGGAACTCCTGGAGCAAG 58.619 57.895 23.43 1.02 46.07 4.01
283 285 4.668925 AGGGAACTCCTGGAGCAA 57.331 55.556 23.43 0.00 46.07 3.91
305 307 9.101655 GAGTTAAAACAGTTACAGTACCTTTCA 57.898 33.333 0.00 0.00 0.00 2.69
368 370 0.672401 GCAGTGCCGGCAACTAAGTA 60.672 55.000 34.66 1.55 0.00 2.24
370 372 1.672356 AGCAGTGCCGGCAACTAAG 60.672 57.895 34.66 19.67 0.00 2.18
520 522 0.969894 AACAGAGCAGGCGACTAACT 59.030 50.000 0.00 0.00 40.21 2.24
545 568 2.642254 CCCTACCTCGTCGGCACAA 61.642 63.158 0.00 0.00 35.61 3.33
660 683 1.527034 AACAGAGTTGACGCATGCAT 58.473 45.000 19.57 0.36 0.00 3.96
661 684 1.264020 GAAACAGAGTTGACGCATGCA 59.736 47.619 19.57 0.00 0.00 3.96
662 685 1.264020 TGAAACAGAGTTGACGCATGC 59.736 47.619 7.91 7.91 0.00 4.06
682 705 3.324846 GCTGGAAATCCAAACCCTCTTTT 59.675 43.478 3.35 0.00 46.97 2.27
838 918 2.222908 GCAGCAGAGAACGAGTAAATGC 60.223 50.000 0.00 0.00 0.00 3.56
918 1020 4.410555 AGAACTAATTAAGAGGAGGCCAGG 59.589 45.833 5.01 0.00 0.00 4.45
949 1052 1.333619 CAGAAGAGAGAGAGTAGGCGC 59.666 57.143 0.00 0.00 0.00 6.53
1004 1110 3.541831 CGACGTTGTCCGCCATCG 61.542 66.667 0.00 3.24 41.42 3.84
1139 1247 4.892345 TGAGTCCATGAGTGAGAGATAAGG 59.108 45.833 0.00 0.00 0.00 2.69
1154 1269 0.674581 CACGCACACCATGAGTCCAT 60.675 55.000 0.00 0.00 39.65 3.41
1155 1270 1.301637 CACGCACACCATGAGTCCA 60.302 57.895 0.00 0.00 39.65 4.02
1156 1271 2.680913 GCACGCACACCATGAGTCC 61.681 63.158 0.00 0.00 39.65 3.85
1157 1272 2.863153 GCACGCACACCATGAGTC 59.137 61.111 0.00 0.00 39.65 3.36
1158 1273 2.428960 TACGCACGCACACCATGAGT 62.429 55.000 0.00 0.00 42.86 3.41
1159 1274 1.736282 TACGCACGCACACCATGAG 60.736 57.895 0.00 0.00 0.00 2.90
1160 1275 2.024868 GTACGCACGCACACCATGA 61.025 57.895 0.00 0.00 0.00 3.07
1161 1276 2.474266 GTACGCACGCACACCATG 59.526 61.111 0.00 0.00 0.00 3.66
1162 1277 3.109547 CGTACGCACGCACACCAT 61.110 61.111 0.52 0.00 42.05 3.55
1201 1318 0.387367 CGTCAGAGAGACCAACACCG 60.387 60.000 0.00 0.00 44.66 4.94
1202 1319 0.667792 GCGTCAGAGAGACCAACACC 60.668 60.000 0.00 0.00 44.66 4.16
1203 1320 0.032130 TGCGTCAGAGAGACCAACAC 59.968 55.000 0.00 0.00 44.66 3.32
1204 1321 0.032130 GTGCGTCAGAGAGACCAACA 59.968 55.000 0.00 0.00 44.66 3.33
1205 1322 1.004277 CGTGCGTCAGAGAGACCAAC 61.004 60.000 0.00 0.00 44.66 3.77
1243 1410 3.127533 GTCCACATCGTGCCTGCC 61.128 66.667 0.00 0.00 31.34 4.85
2537 3082 1.005037 CCACTGCGTGCTCCACTTA 60.005 57.895 3.56 0.00 31.34 2.24
2615 3160 0.538057 ATTTGATGCCGGCGATGGAT 60.538 50.000 23.90 9.28 0.00 3.41
2692 3238 7.681679 TCCTACACCTTGATGTATTGTTTGTA 58.318 34.615 0.00 0.00 34.59 2.41
2958 3532 1.726791 GCGTTCATAGGTGTGAGTGTG 59.273 52.381 0.00 0.00 0.00 3.82
3000 3574 1.251527 GCTCAGTCCCTCGGAAGTGA 61.252 60.000 0.00 0.00 31.38 3.41
3004 3578 3.068691 CGGCTCAGTCCCTCGGAA 61.069 66.667 0.00 0.00 31.38 4.30
3060 3634 3.889520 CCACTAGGGTTCAAGTCCTAC 57.110 52.381 0.00 0.00 34.75 3.18
3174 3749 4.715527 ACTACTTTGCTAGAGGTTACCG 57.284 45.455 0.00 0.00 0.00 4.02
3175 3750 5.791666 ACAACTACTTTGCTAGAGGTTACC 58.208 41.667 0.00 0.00 39.01 2.85
3271 3856 0.107654 GGCTCACATACCAGTGTCCC 60.108 60.000 0.00 0.00 40.37 4.46
3283 3868 0.109532 TTTTGGATGGTCGGCTCACA 59.890 50.000 0.00 0.00 0.00 3.58
3349 3934 1.143373 GCGCGTGTTATGATCGGACA 61.143 55.000 8.43 0.00 0.00 4.02
3359 3944 2.577644 GATCCGTCGCGCGTGTTA 60.578 61.111 30.98 14.64 39.32 2.41
3434 4019 9.148104 ACTACCGAACTTATATTCTTTTGTGAC 57.852 33.333 0.00 0.00 0.00 3.67
3482 4067 0.251121 TTTTCGATCCAGCAGGGCAA 60.251 50.000 0.00 0.00 36.21 4.52
3495 4080 1.890489 TGTGGAGTCTCGGATTTTCGA 59.110 47.619 0.00 0.00 37.60 3.71
3499 4084 2.248248 TGAGTGTGGAGTCTCGGATTT 58.752 47.619 0.00 0.00 33.88 2.17
3515 4100 2.125512 GGCGGCGACAGATTGAGT 60.126 61.111 12.98 0.00 0.00 3.41
3558 4143 0.179086 GCAGTAGGAAGAGCTGGAGC 60.179 60.000 0.00 0.00 42.49 4.70
3573 4158 0.877071 CAAGATGTTGAAGCGGCAGT 59.123 50.000 1.45 0.00 35.46 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.