Multiple sequence alignment - TraesCS3D01G402100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G402100 chr3D 100.000 3717 0 0 1 3717 516668176 516664460 0.000000e+00 6865.0
1 TraesCS3D01G402100 chr3D 88.785 1391 114 23 1488 2859 516426791 516425424 0.000000e+00 1666.0
2 TraesCS3D01G402100 chr3D 76.730 1590 301 38 962 2495 96402006 96403582 0.000000e+00 822.0
3 TraesCS3D01G402100 chr3D 100.000 318 0 0 4015 4332 516664162 516663845 4.830000e-164 588.0
4 TraesCS3D01G402100 chr3D 88.318 428 45 2 1057 1482 516418748 516419172 3.860000e-140 508.0
5 TraesCS3D01G402100 chr3D 88.172 279 26 5 3167 3445 516458496 516458767 4.180000e-85 326.0
6 TraesCS3D01G402100 chr3D 82.000 100 13 4 4044 4140 35667575 35667478 3.590000e-11 80.5
7 TraesCS3D01G402100 chr3D 83.871 93 2 3 4167 4259 516663966 516663887 4.650000e-10 76.8
8 TraesCS3D01G402100 chr3D 83.871 93 2 3 4211 4290 516664010 516663918 4.650000e-10 76.8
9 TraesCS3D01G402100 chr3D 92.157 51 3 1 2929 2979 552584780 552584829 2.160000e-08 71.3
10 TraesCS3D01G402100 chr3B 95.340 2704 88 23 429 3126 681005924 681008595 0.000000e+00 4261.0
11 TraesCS3D01G402100 chr3B 77.498 1391 253 28 926 2266 147553003 147554383 0.000000e+00 780.0
12 TraesCS3D01G402100 chr3B 97.436 390 9 1 3123 3511 681008868 681009257 0.000000e+00 664.0
13 TraesCS3D01G402100 chr3B 86.245 538 44 13 2099 2622 680757060 680756539 1.360000e-154 556.0
14 TraesCS3D01G402100 chr3B 83.765 425 44 14 1 404 680906287 680906707 3.160000e-101 379.0
15 TraesCS3D01G402100 chr3B 93.333 210 10 1 3508 3717 681034404 681034609 1.510000e-79 307.0
16 TraesCS3D01G402100 chr3B 97.561 82 1 1 2855 2936 698611522 698611442 5.840000e-29 139.0
17 TraesCS3D01G402100 chr3B 94.805 77 4 0 4256 4332 681034797 681034873 2.120000e-23 121.0
18 TraesCS3D01G402100 chr3B 83.333 102 15 2 4040 4139 759028971 759028870 4.610000e-15 93.5
19 TraesCS3D01G402100 chr3A 91.206 1103 46 19 276 1347 651644732 651643650 0.000000e+00 1452.0
20 TraesCS3D01G402100 chr3A 93.779 852 45 3 1335 2178 651625109 651625960 0.000000e+00 1273.0
21 TraesCS3D01G402100 chr3A 78.158 1140 202 22 912 2011 114433247 114434379 0.000000e+00 682.0
22 TraesCS3D01G402100 chr3A 84.986 706 67 23 2170 2856 651626190 651626875 0.000000e+00 680.0
23 TraesCS3D01G402100 chr3A 97.885 331 6 1 1389 1718 651643648 651643318 4.860000e-159 571.0
24 TraesCS3D01G402100 chr3A 83.254 418 41 13 3223 3626 651639432 651639834 1.480000e-94 357.0
25 TraesCS3D01G402100 chr3A 80.903 288 38 5 2 273 651645328 651645042 1.220000e-50 211.0
26 TraesCS3D01G402100 chr3A 92.391 92 7 0 2845 2936 607058397 607058488 9.780000e-27 132.0
27 TraesCS3D01G402100 chr3A 82.301 113 15 4 1 108 716564789 716564677 4.610000e-15 93.5
28 TraesCS3D01G402100 chr3A 81.416 113 16 4 1 108 188930589 188930701 2.150000e-13 87.9
29 TraesCS3D01G402100 chr3A 81.416 113 16 4 1 108 521313207 521313319 2.150000e-13 87.9
30 TraesCS3D01G402100 chr4D 78.356 596 113 12 1203 1795 41920335 41920917 5.290000e-99 372.0
31 TraesCS3D01G402100 chr4D 85.827 127 12 3 2859 2984 486775918 486775797 3.520000e-26 130.0
32 TraesCS3D01G402100 chr4D 82.609 92 15 1 4049 4139 404670324 404670415 3.590000e-11 80.5
33 TraesCS3D01G402100 chr2D 82.899 345 57 2 1205 1548 587370678 587370335 4.210000e-80 309.0
34 TraesCS3D01G402100 chr2A 81.847 314 57 0 1238 1551 717557040 717556727 9.240000e-67 265.0
35 TraesCS3D01G402100 chr2A 84.946 93 12 2 4049 4139 658469875 658469967 4.610000e-15 93.5
36 TraesCS3D01G402100 chr2A 81.579 114 14 6 1 108 29834259 29834147 2.150000e-13 87.9
37 TraesCS3D01G402100 chr2A 81.579 114 14 6 1 108 29857994 29857882 2.150000e-13 87.9
38 TraesCS3D01G402100 chrUn 97.531 81 2 0 2856 2936 96130983 96131063 5.840000e-29 139.0
39 TraesCS3D01G402100 chrUn 86.066 122 12 3 2859 2979 27488164 27488281 4.550000e-25 126.0
40 TraesCS3D01G402100 chr6B 95.349 86 4 0 2851 2936 127605804 127605889 2.100000e-28 137.0
41 TraesCS3D01G402100 chr6B 81.714 175 23 5 431 598 686545258 686545430 2.100000e-28 137.0
42 TraesCS3D01G402100 chr7A 91.667 96 5 2 2844 2936 443397813 443397718 3.520000e-26 130.0
43 TraesCS3D01G402100 chr2B 85.965 114 10 3 2849 2961 351221920 351222028 2.740000e-22 117.0
44 TraesCS3D01G402100 chr5B 87.912 91 10 1 4050 4139 658885963 658886053 5.920000e-19 106.0
45 TraesCS3D01G402100 chr5B 85.294 68 8 2 2935 3001 618288661 618288595 7.770000e-08 69.4
46 TraesCS3D01G402100 chr5B 80.682 88 10 3 1 83 655805510 655805425 1.300000e-05 62.1
47 TraesCS3D01G402100 chr5D 86.047 86 12 0 4049 4134 362561153 362561068 4.610000e-15 93.5
48 TraesCS3D01G402100 chr5D 87.013 77 10 0 4049 4125 268951613 268951689 2.150000e-13 87.9
49 TraesCS3D01G402100 chr4B 80.315 127 15 5 442 560 172791660 172791536 2.150000e-13 87.9
50 TraesCS3D01G402100 chr1A 83.516 91 15 0 4045 4135 527694037 527693947 7.720000e-13 86.1
51 TraesCS3D01G402100 chr1A 84.058 69 6 1 1 64 584482068 584482136 1.300000e-05 62.1
52 TraesCS3D01G402100 chr6A 83.721 86 14 0 4049 4134 80684991 80684906 9.980000e-12 82.4
53 TraesCS3D01G402100 chr6A 80.682 88 10 3 1 83 297424903 297424818 1.300000e-05 62.1
54 TraesCS3D01G402100 chr7D 97.778 45 1 0 2935 2979 604296092 604296048 1.290000e-10 78.7
55 TraesCS3D01G402100 chr6D 97.778 45 1 0 2935 2979 460745043 460745087 1.290000e-10 78.7
56 TraesCS3D01G402100 chr5A 97.778 45 1 0 2935 2979 529307188 529307144 1.290000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G402100 chr3D 516663845 516668176 4331 True 1901.650000 6865 91.9355 1 4332 4 chr3D.!!$R3 4331
1 TraesCS3D01G402100 chr3D 516425424 516426791 1367 True 1666.000000 1666 88.7850 1488 2859 1 chr3D.!!$R2 1371
2 TraesCS3D01G402100 chr3D 96402006 96403582 1576 False 822.000000 822 76.7300 962 2495 1 chr3D.!!$F1 1533
3 TraesCS3D01G402100 chr3B 681005924 681009257 3333 False 2462.500000 4261 96.3880 429 3511 2 chr3B.!!$F3 3082
4 TraesCS3D01G402100 chr3B 147553003 147554383 1380 False 780.000000 780 77.4980 926 2266 1 chr3B.!!$F1 1340
5 TraesCS3D01G402100 chr3B 680756539 680757060 521 True 556.000000 556 86.2450 2099 2622 1 chr3B.!!$R1 523
6 TraesCS3D01G402100 chr3A 651625109 651626875 1766 False 976.500000 1273 89.3825 1335 2856 2 chr3A.!!$F6 1521
7 TraesCS3D01G402100 chr3A 651643318 651645328 2010 True 744.666667 1452 89.9980 2 1718 3 chr3A.!!$R2 1716
8 TraesCS3D01G402100 chr3A 114433247 114434379 1132 False 682.000000 682 78.1580 912 2011 1 chr3A.!!$F1 1099
9 TraesCS3D01G402100 chr4D 41920335 41920917 582 False 372.000000 372 78.3560 1203 1795 1 chr4D.!!$F1 592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
345 669 0.389391 ATTCGGACGGAGGTAGCATG 59.611 55.000 0.00 0.00 0.00 4.06 F
1155 1541 1.448540 CTGGGCGTCGCTTTCAGAT 60.449 57.895 18.11 0.00 0.00 2.90 F
1392 1780 0.834612 TCAACCTTGACACGGGAACT 59.165 50.000 2.65 0.00 31.01 3.01 F
1446 1834 1.373497 CTGCGCTCTTGACTCGGTT 60.373 57.895 9.73 0.00 0.00 4.44 F
3036 3771 0.179166 CTATTTGTGGCGCGCACATT 60.179 50.000 34.42 23.19 32.12 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1392 1780 1.305201 GGAGCTTGACACGGACAAAA 58.695 50.000 0.00 0.0 0.00 2.44 R
3012 3747 0.521242 GCGCGCCACAAATAGAACAG 60.521 55.000 23.24 0.0 0.00 3.16 R
3036 3771 1.134521 AGCAAGACACCTCACGAACAA 60.135 47.619 0.00 0.0 0.00 2.83 R
3176 4188 2.740055 GCTAGCTGCTGCGTGTGT 60.740 61.111 13.43 0.0 45.42 3.72 R
4129 5141 0.039074 CGATGGTGATACTCGGCTCC 60.039 60.000 0.00 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 8.654485 TCAAAGTTATAGGACTAACACACCTA 57.346 34.615 0.00 0.00 39.99 3.08
51 52 8.526147 TCAAAGTTATAGGACTAACACACCTAC 58.474 37.037 0.00 0.00 38.79 3.18
64 65 8.098912 ACTAACACACCTACAATAGTTTTAGGG 58.901 37.037 6.80 0.00 37.32 3.53
65 66 5.250982 ACACACCTACAATAGTTTTAGGGC 58.749 41.667 6.80 0.00 37.32 5.19
81 82 9.763837 AGTTTTAGGGCCTATAATTACAGTTTT 57.236 29.630 15.37 0.00 0.00 2.43
88 93 8.340443 GGGCCTATAATTACAGTTTTAAAGTCG 58.660 37.037 0.84 0.00 0.00 4.18
107 112 5.758570 GTCGTAGGACTAAATTGACACAC 57.241 43.478 8.31 0.00 40.15 3.82
114 119 7.556733 AGGACTAAATTGACACACGTTTTAA 57.443 32.000 0.00 0.00 0.00 1.52
123 128 4.033587 TGACACACGTTTTAAGACTTGCTC 59.966 41.667 2.91 0.01 0.00 4.26
126 131 2.225727 CACGTTTTAAGACTTGCTCCCC 59.774 50.000 0.00 0.00 0.00 4.81
127 132 1.810755 CGTTTTAAGACTTGCTCCCCC 59.189 52.381 0.00 0.00 0.00 5.40
128 133 1.810755 GTTTTAAGACTTGCTCCCCCG 59.189 52.381 0.00 0.00 0.00 5.73
142 148 1.972795 TCCCCCGTCCGGATTTATTAG 59.027 52.381 7.81 0.00 37.50 1.73
148 154 3.573110 CCGTCCGGATTTATTAGACCTCT 59.427 47.826 7.81 0.00 37.50 3.69
166 172 8.066612 AGACCTCTTTTCATTTTGAGTCAAAA 57.933 30.769 28.30 28.30 45.41 2.44
243 260 9.790389 AACGTCTTTCAAATACAAATACAACAA 57.210 25.926 0.00 0.00 0.00 2.83
320 644 3.664551 ACCTAAAATGTAAGGAGGCCC 57.335 47.619 0.00 0.00 36.66 5.80
334 658 1.602377 GAGGCCCAATAAATTCGGACG 59.398 52.381 0.00 0.00 30.61 4.79
342 666 2.877043 TAAATTCGGACGGAGGTAGC 57.123 50.000 0.00 0.00 0.00 3.58
345 669 0.389391 ATTCGGACGGAGGTAGCATG 59.611 55.000 0.00 0.00 0.00 4.06
394 718 7.093377 TGGCTAAAATACAAAGGATGAATGCTT 60.093 33.333 0.00 0.00 40.34 3.91
395 719 7.223387 GGCTAAAATACAAAGGATGAATGCTTG 59.777 37.037 0.00 0.00 38.51 4.01
399 723 2.494870 ACAAAGGATGAATGCTTGCCTC 59.505 45.455 0.00 0.00 38.51 4.70
404 728 2.223971 GGATGAATGCTTGCCTCCAATG 60.224 50.000 0.00 0.00 0.00 2.82
507 862 7.654022 AAAAACTGAAACTTACCATCCAGAA 57.346 32.000 0.00 0.00 0.00 3.02
794 1149 1.672356 CCCCTCAAACGTGCTCCAG 60.672 63.158 0.00 0.00 0.00 3.86
892 1247 7.885209 ATCTGGATATATAATCTGGGGATGG 57.115 40.000 0.00 0.00 31.75 3.51
968 1330 9.535878 AGAGGTAAAATTCGTCATCTCTTAATC 57.464 33.333 0.00 0.00 0.00 1.75
992 1354 1.579698 CATCAGATCTGCGAGTTGGG 58.420 55.000 18.36 0.00 0.00 4.12
1155 1541 1.448540 CTGGGCGTCGCTTTCAGAT 60.449 57.895 18.11 0.00 0.00 2.90
1392 1780 0.834612 TCAACCTTGACACGGGAACT 59.165 50.000 2.65 0.00 31.01 3.01
1446 1834 1.373497 CTGCGCTCTTGACTCGGTT 60.373 57.895 9.73 0.00 0.00 4.44
1980 2400 6.485984 GCTCCATGTCTCACATTTTGATCTAT 59.514 38.462 0.00 0.00 36.53 1.98
2073 2493 4.544689 CGGAGCCTGAGCGTCTCG 62.545 72.222 3.08 0.00 46.67 4.04
2363 3073 2.357569 GGGCCATTCTTCTTGTGATCCT 60.358 50.000 4.39 0.00 0.00 3.24
2477 3188 9.575868 TTGGGTAAATCTTACTCACAATTAACA 57.424 29.630 0.00 0.00 0.00 2.41
2524 3236 7.502895 TCATGATAGTCTTAGTAACCACCTCTC 59.497 40.741 0.00 0.00 0.00 3.20
2591 3308 7.201938 CCACAATAGTTTATGCCCTTGATCAAT 60.202 37.037 8.96 0.00 0.00 2.57
2701 3433 7.080353 TGTTTTCTGTTCAGATGATATGCAG 57.920 36.000 3.28 0.00 0.00 4.41
2885 3620 4.565028 CCCTCCGTTCCTAAATATAAGCCC 60.565 50.000 0.00 0.00 0.00 5.19
2998 3733 7.012421 GGGAGTAGAAGTGTATTTATGCCTTTG 59.988 40.741 0.00 0.00 0.00 2.77
3029 3764 4.413495 TTTACTGTTCTATTTGTGGCGC 57.587 40.909 0.00 0.00 0.00 6.53
3036 3771 0.179166 CTATTTGTGGCGCGCACATT 60.179 50.000 34.42 23.19 32.12 2.71
3055 3790 1.295792 TTGTTCGTGAGGTGTCTTGC 58.704 50.000 0.00 0.00 0.00 4.01
3075 3810 8.723942 TCTTGCTAAAGACCATTAGATTCTTC 57.276 34.615 0.00 0.00 37.51 2.87
3109 3844 7.885297 ACTAAAACAAGCTAAATGATTCTGCA 58.115 30.769 0.00 0.00 0.00 4.41
3112 3847 5.320549 ACAAGCTAAATGATTCTGCAAGG 57.679 39.130 0.00 0.00 0.00 3.61
3125 4136 5.947228 TTCTGCAAGGAGAAACATGTTAG 57.053 39.130 12.39 2.15 0.00 2.34
3240 4252 5.706833 TGTGCTCAATGATCTTTGTACATGT 59.293 36.000 17.97 2.69 0.00 3.21
3271 4283 8.114331 TCTGCTTTTACATTTGATCAGATTGT 57.886 30.769 10.77 10.77 0.00 2.71
3466 4478 8.543774 GTTCATATATCTTTGGTTCAACTCTCG 58.456 37.037 0.00 0.00 0.00 4.04
3511 4523 7.013083 TCACATTAGTTAGATCCTCGACCTTAC 59.987 40.741 0.00 0.00 0.00 2.34
3512 4524 7.013464 CACATTAGTTAGATCCTCGACCTTACT 59.987 40.741 0.00 0.00 0.00 2.24
3513 4525 8.216423 ACATTAGTTAGATCCTCGACCTTACTA 58.784 37.037 0.00 0.00 0.00 1.82
3514 4526 8.505625 CATTAGTTAGATCCTCGACCTTACTAC 58.494 40.741 0.00 0.00 0.00 2.73
3515 4527 6.251255 AGTTAGATCCTCGACCTTACTACT 57.749 41.667 0.00 0.00 0.00 2.57
3516 4528 6.056884 AGTTAGATCCTCGACCTTACTACTG 58.943 44.000 0.00 0.00 0.00 2.74
3517 4529 4.774660 AGATCCTCGACCTTACTACTGA 57.225 45.455 0.00 0.00 0.00 3.41
3518 4530 5.113446 AGATCCTCGACCTTACTACTGAA 57.887 43.478 0.00 0.00 0.00 3.02
3519 4531 5.507637 AGATCCTCGACCTTACTACTGAAA 58.492 41.667 0.00 0.00 0.00 2.69
3520 4532 5.950549 AGATCCTCGACCTTACTACTGAAAA 59.049 40.000 0.00 0.00 0.00 2.29
3521 4533 6.608002 AGATCCTCGACCTTACTACTGAAAAT 59.392 38.462 0.00 0.00 0.00 1.82
3522 4534 6.600882 TCCTCGACCTTACTACTGAAAATT 57.399 37.500 0.00 0.00 0.00 1.82
3523 4535 7.707624 TCCTCGACCTTACTACTGAAAATTA 57.292 36.000 0.00 0.00 0.00 1.40
3524 4536 7.542025 TCCTCGACCTTACTACTGAAAATTAC 58.458 38.462 0.00 0.00 0.00 1.89
3525 4537 7.177216 TCCTCGACCTTACTACTGAAAATTACA 59.823 37.037 0.00 0.00 0.00 2.41
3526 4538 7.275123 CCTCGACCTTACTACTGAAAATTACAC 59.725 40.741 0.00 0.00 0.00 2.90
3527 4539 7.092716 TCGACCTTACTACTGAAAATTACACC 58.907 38.462 0.00 0.00 0.00 4.16
3528 4540 6.312180 CGACCTTACTACTGAAAATTACACCC 59.688 42.308 0.00 0.00 0.00 4.61
3529 4541 6.168389 ACCTTACTACTGAAAATTACACCCG 58.832 40.000 0.00 0.00 0.00 5.28
3530 4542 6.168389 CCTTACTACTGAAAATTACACCCGT 58.832 40.000 0.00 0.00 0.00 5.28
3531 4543 6.652062 CCTTACTACTGAAAATTACACCCGTT 59.348 38.462 0.00 0.00 0.00 4.44
3532 4544 7.148523 CCTTACTACTGAAAATTACACCCGTTC 60.149 40.741 0.00 0.00 0.00 3.95
3533 4545 5.613329 ACTACTGAAAATTACACCCGTTCA 58.387 37.500 0.00 0.00 0.00 3.18
3534 4546 6.235664 ACTACTGAAAATTACACCCGTTCAT 58.764 36.000 0.00 0.00 0.00 2.57
3535 4547 6.713450 ACTACTGAAAATTACACCCGTTCATT 59.287 34.615 0.00 0.00 0.00 2.57
3536 4548 7.879160 ACTACTGAAAATTACACCCGTTCATTA 59.121 33.333 0.00 0.00 0.00 1.90
3537 4549 7.513371 ACTGAAAATTACACCCGTTCATTAA 57.487 32.000 0.00 0.00 0.00 1.40
3538 4550 7.942990 ACTGAAAATTACACCCGTTCATTAAA 58.057 30.769 0.00 0.00 0.00 1.52
3539 4551 8.079809 ACTGAAAATTACACCCGTTCATTAAAG 58.920 33.333 0.00 0.00 0.00 1.85
3540 4552 7.371936 TGAAAATTACACCCGTTCATTAAAGG 58.628 34.615 0.00 0.00 34.33 3.11
3541 4553 7.230913 TGAAAATTACACCCGTTCATTAAAGGA 59.769 33.333 0.00 0.00 36.43 3.36
3542 4554 7.712204 AAATTACACCCGTTCATTAAAGGAT 57.288 32.000 0.00 0.00 36.43 3.24
3543 4555 6.693315 ATTACACCCGTTCATTAAAGGATG 57.307 37.500 0.00 0.00 36.43 3.51
3544 4556 3.352648 ACACCCGTTCATTAAAGGATGG 58.647 45.455 0.00 0.00 36.43 3.51
3545 4557 2.687935 CACCCGTTCATTAAAGGATGGG 59.312 50.000 13.84 13.84 36.43 4.00
3546 4558 2.306847 CCCGTTCATTAAAGGATGGGG 58.693 52.381 8.26 5.50 36.43 4.96
3547 4559 2.357777 CCCGTTCATTAAAGGATGGGGT 60.358 50.000 8.26 0.00 36.43 4.95
3548 4560 3.361786 CCGTTCATTAAAGGATGGGGTT 58.638 45.455 0.00 0.00 36.43 4.11
3549 4561 3.767131 CCGTTCATTAAAGGATGGGGTTT 59.233 43.478 0.00 0.00 36.43 3.27
3550 4562 4.142249 CCGTTCATTAAAGGATGGGGTTTC 60.142 45.833 0.00 0.00 36.43 2.78
3551 4563 4.705023 CGTTCATTAAAGGATGGGGTTTCT 59.295 41.667 0.00 0.00 0.00 2.52
3552 4564 5.163652 CGTTCATTAAAGGATGGGGTTTCTC 60.164 44.000 0.00 0.00 0.00 2.87
3553 4565 5.528600 TCATTAAAGGATGGGGTTTCTCA 57.471 39.130 0.00 0.00 0.00 3.27
3554 4566 5.898120 TCATTAAAGGATGGGGTTTCTCAA 58.102 37.500 0.00 0.00 0.00 3.02
3555 4567 5.951747 TCATTAAAGGATGGGGTTTCTCAAG 59.048 40.000 0.00 0.00 0.00 3.02
3556 4568 2.907458 AAGGATGGGGTTTCTCAAGG 57.093 50.000 0.00 0.00 0.00 3.61
3557 4569 1.760405 AGGATGGGGTTTCTCAAGGT 58.240 50.000 0.00 0.00 0.00 3.50
3558 4570 2.073776 AGGATGGGGTTTCTCAAGGTT 58.926 47.619 0.00 0.00 0.00 3.50
3559 4571 2.450886 AGGATGGGGTTTCTCAAGGTTT 59.549 45.455 0.00 0.00 0.00 3.27
3560 4572 2.562738 GGATGGGGTTTCTCAAGGTTTG 59.437 50.000 0.00 0.00 0.00 2.93
3561 4573 1.408969 TGGGGTTTCTCAAGGTTTGC 58.591 50.000 0.00 0.00 0.00 3.68
3562 4574 1.063266 TGGGGTTTCTCAAGGTTTGCT 60.063 47.619 0.00 0.00 0.00 3.91
3563 4575 2.039418 GGGGTTTCTCAAGGTTTGCTT 58.961 47.619 0.00 0.00 0.00 3.91
3564 4576 2.434336 GGGGTTTCTCAAGGTTTGCTTT 59.566 45.455 0.00 0.00 0.00 3.51
3565 4577 3.457234 GGGTTTCTCAAGGTTTGCTTTG 58.543 45.455 0.00 0.00 33.58 2.77
3566 4578 3.132111 GGGTTTCTCAAGGTTTGCTTTGA 59.868 43.478 0.00 0.00 38.20 2.69
3573 4585 4.997565 TCAAGGTTTGCTTTGAGAGTTTG 58.002 39.130 0.00 0.00 36.07 2.93
3574 4586 4.114794 CAAGGTTTGCTTTGAGAGTTTGG 58.885 43.478 0.00 0.00 34.08 3.28
3575 4587 3.631250 AGGTTTGCTTTGAGAGTTTGGA 58.369 40.909 0.00 0.00 0.00 3.53
3576 4588 3.381590 AGGTTTGCTTTGAGAGTTTGGAC 59.618 43.478 0.00 0.00 0.00 4.02
3577 4589 3.130340 GGTTTGCTTTGAGAGTTTGGACA 59.870 43.478 0.00 0.00 0.00 4.02
3578 4590 4.202151 GGTTTGCTTTGAGAGTTTGGACAT 60.202 41.667 0.00 0.00 0.00 3.06
3579 4591 5.351458 GTTTGCTTTGAGAGTTTGGACATT 58.649 37.500 0.00 0.00 0.00 2.71
3580 4592 5.596836 TTGCTTTGAGAGTTTGGACATTT 57.403 34.783 0.00 0.00 0.00 2.32
3581 4593 5.596836 TGCTTTGAGAGTTTGGACATTTT 57.403 34.783 0.00 0.00 0.00 1.82
3582 4594 6.707440 TGCTTTGAGAGTTTGGACATTTTA 57.293 33.333 0.00 0.00 0.00 1.52
3583 4595 6.738114 TGCTTTGAGAGTTTGGACATTTTAG 58.262 36.000 0.00 0.00 0.00 1.85
3584 4596 6.545666 TGCTTTGAGAGTTTGGACATTTTAGA 59.454 34.615 0.00 0.00 0.00 2.10
3585 4597 7.231317 TGCTTTGAGAGTTTGGACATTTTAGAT 59.769 33.333 0.00 0.00 0.00 1.98
3586 4598 7.540055 GCTTTGAGAGTTTGGACATTTTAGATG 59.460 37.037 0.00 0.00 0.00 2.90
3587 4599 8.463930 TTTGAGAGTTTGGACATTTTAGATGT 57.536 30.769 0.00 0.00 34.52 3.06
3588 4600 7.439157 TGAGAGTTTGGACATTTTAGATGTG 57.561 36.000 0.00 0.00 31.52 3.21
3589 4601 7.223584 TGAGAGTTTGGACATTTTAGATGTGA 58.776 34.615 0.00 0.00 31.52 3.58
3590 4602 7.719193 TGAGAGTTTGGACATTTTAGATGTGAA 59.281 33.333 0.00 0.00 31.52 3.18
3591 4603 8.641498 AGAGTTTGGACATTTTAGATGTGAAT 57.359 30.769 0.00 0.00 31.52 2.57
3592 4604 8.734386 AGAGTTTGGACATTTTAGATGTGAATC 58.266 33.333 0.00 0.00 31.52 2.52
3593 4605 8.408043 AGTTTGGACATTTTAGATGTGAATCA 57.592 30.769 0.00 0.00 31.52 2.57
3594 4606 9.028284 AGTTTGGACATTTTAGATGTGAATCAT 57.972 29.630 0.00 0.00 39.77 2.45
3595 4607 9.643693 GTTTGGACATTTTAGATGTGAATCATT 57.356 29.630 0.00 0.00 36.83 2.57
3605 4617 9.830975 TTTAGATGTGAATCATTTATCCGAAGA 57.169 29.630 0.00 0.00 36.83 2.87
3607 4619 8.545229 AGATGTGAATCATTTATCCGAAGATC 57.455 34.615 0.00 0.00 36.83 2.75
3608 4620 6.769608 TGTGAATCATTTATCCGAAGATCG 57.230 37.500 0.00 0.00 40.07 3.69
3610 4622 7.956174 ATGTGAATCATTTATCCGAAGATCGGT 60.956 37.037 17.45 8.49 46.31 4.69
3621 4633 4.775058 CGAAGATCGGTCATAGATCCTT 57.225 45.455 0.00 0.00 44.02 3.36
3622 4634 4.728534 CGAAGATCGGTCATAGATCCTTC 58.271 47.826 0.00 0.00 44.02 3.46
3623 4635 4.457603 CGAAGATCGGTCATAGATCCTTCT 59.542 45.833 0.00 0.00 44.02 2.85
3624 4636 5.618863 CGAAGATCGGTCATAGATCCTTCTG 60.619 48.000 0.00 0.00 44.02 3.02
3625 4637 4.085733 AGATCGGTCATAGATCCTTCTGG 58.914 47.826 0.00 0.00 44.02 3.86
3626 4638 2.598565 TCGGTCATAGATCCTTCTGGG 58.401 52.381 0.00 0.00 33.17 4.45
3635 4647 3.711849 TCCTTCTGGGACTTCGGAT 57.288 52.632 0.00 0.00 39.58 4.18
3636 4648 1.195115 TCCTTCTGGGACTTCGGATG 58.805 55.000 0.00 0.00 39.58 3.51
3637 4649 0.905357 CCTTCTGGGACTTCGGATGT 59.095 55.000 0.00 0.00 37.23 3.06
3638 4650 1.134670 CCTTCTGGGACTTCGGATGTC 60.135 57.143 13.90 13.90 37.23 3.06
3639 4651 1.827969 CTTCTGGGACTTCGGATGTCT 59.172 52.381 19.55 0.00 35.04 3.41
3640 4652 1.475403 TCTGGGACTTCGGATGTCTC 58.525 55.000 19.55 17.40 35.61 3.36
3641 4653 1.006043 TCTGGGACTTCGGATGTCTCT 59.994 52.381 20.54 0.00 36.01 3.10
3642 4654 1.135915 CTGGGACTTCGGATGTCTCTG 59.864 57.143 20.54 17.08 36.01 3.35
3643 4655 0.461961 GGGACTTCGGATGTCTCTGG 59.538 60.000 19.55 0.00 32.53 3.86
3644 4656 0.461961 GGACTTCGGATGTCTCTGGG 59.538 60.000 19.55 0.00 35.04 4.45
3645 4657 1.475403 GACTTCGGATGTCTCTGGGA 58.525 55.000 14.74 0.00 0.00 4.37
3646 4658 1.825474 GACTTCGGATGTCTCTGGGAA 59.175 52.381 14.74 0.00 0.00 3.97
3647 4659 2.233922 GACTTCGGATGTCTCTGGGAAA 59.766 50.000 14.74 0.00 0.00 3.13
3648 4660 2.028020 ACTTCGGATGTCTCTGGGAAAC 60.028 50.000 0.00 0.00 0.00 2.78
3649 4661 0.530744 TCGGATGTCTCTGGGAAACG 59.469 55.000 0.00 0.00 0.00 3.60
3650 4662 0.460284 CGGATGTCTCTGGGAAACGG 60.460 60.000 0.00 0.00 0.00 4.44
3651 4663 0.107654 GGATGTCTCTGGGAAACGGG 60.108 60.000 0.00 0.00 0.00 5.28
3652 4664 0.744771 GATGTCTCTGGGAAACGGGC 60.745 60.000 0.00 0.00 0.00 6.13
3653 4665 1.488705 ATGTCTCTGGGAAACGGGCA 61.489 55.000 0.00 0.00 0.00 5.36
3654 4666 1.299976 GTCTCTGGGAAACGGGCAT 59.700 57.895 0.00 0.00 0.00 4.40
3655 4667 0.744771 GTCTCTGGGAAACGGGCATC 60.745 60.000 0.00 0.00 0.00 3.91
3656 4668 1.815421 CTCTGGGAAACGGGCATCG 60.815 63.158 0.00 0.00 45.88 3.84
3657 4669 2.824041 CTGGGAAACGGGCATCGG 60.824 66.667 3.86 0.00 44.45 4.18
3658 4670 4.418328 TGGGAAACGGGCATCGGG 62.418 66.667 3.86 0.00 44.45 5.14
3668 4680 4.792106 GCATCGGGCACAATCAAC 57.208 55.556 0.00 0.00 43.97 3.18
3669 4681 1.882311 GCATCGGGCACAATCAACA 59.118 52.632 0.00 0.00 43.97 3.33
3670 4682 0.243365 GCATCGGGCACAATCAACAA 59.757 50.000 0.00 0.00 43.97 2.83
3671 4683 1.733389 GCATCGGGCACAATCAACAAG 60.733 52.381 0.00 0.00 43.97 3.16
3672 4684 1.811965 CATCGGGCACAATCAACAAGA 59.188 47.619 0.00 0.00 0.00 3.02
3673 4685 1.234821 TCGGGCACAATCAACAAGAC 58.765 50.000 0.00 0.00 0.00 3.01
3674 4686 1.202758 TCGGGCACAATCAACAAGACT 60.203 47.619 0.00 0.00 0.00 3.24
3675 4687 2.037902 TCGGGCACAATCAACAAGACTA 59.962 45.455 0.00 0.00 0.00 2.59
3676 4688 2.416547 CGGGCACAATCAACAAGACTAG 59.583 50.000 0.00 0.00 0.00 2.57
3677 4689 2.749621 GGGCACAATCAACAAGACTAGG 59.250 50.000 0.00 0.00 0.00 3.02
3678 4690 2.162408 GGCACAATCAACAAGACTAGGC 59.838 50.000 0.00 0.00 0.00 3.93
3679 4691 2.159653 GCACAATCAACAAGACTAGGCG 60.160 50.000 0.00 0.00 0.00 5.52
3680 4692 3.067106 CACAATCAACAAGACTAGGCGT 58.933 45.455 0.00 0.00 0.00 5.68
3681 4693 4.242475 CACAATCAACAAGACTAGGCGTA 58.758 43.478 0.00 0.00 0.00 4.42
3682 4694 4.688879 CACAATCAACAAGACTAGGCGTAA 59.311 41.667 0.00 0.00 0.00 3.18
3683 4695 5.178623 CACAATCAACAAGACTAGGCGTAAA 59.821 40.000 0.00 0.00 0.00 2.01
3684 4696 5.408604 ACAATCAACAAGACTAGGCGTAAAG 59.591 40.000 0.00 0.00 0.00 1.85
3701 4713 4.840772 CGTAAAGCAGTTTGATTCTGTTCG 59.159 41.667 0.00 0.00 35.60 3.95
3702 4714 4.900635 AAAGCAGTTTGATTCTGTTCGT 57.099 36.364 0.00 0.00 35.60 3.85
3703 4715 4.900635 AAGCAGTTTGATTCTGTTCGTT 57.099 36.364 0.00 0.00 35.60 3.85
3704 4716 4.214980 AGCAGTTTGATTCTGTTCGTTG 57.785 40.909 0.00 0.00 35.60 4.10
3705 4717 3.627577 AGCAGTTTGATTCTGTTCGTTGT 59.372 39.130 0.00 0.00 35.60 3.32
3706 4718 4.814234 AGCAGTTTGATTCTGTTCGTTGTA 59.186 37.500 0.00 0.00 35.60 2.41
3707 4719 5.050091 AGCAGTTTGATTCTGTTCGTTGTAG 60.050 40.000 0.00 0.00 35.60 2.74
3708 4720 5.050363 GCAGTTTGATTCTGTTCGTTGTAGA 60.050 40.000 0.00 0.00 35.60 2.59
3709 4721 6.347725 GCAGTTTGATTCTGTTCGTTGTAGAT 60.348 38.462 0.00 0.00 35.60 1.98
3710 4722 7.230222 CAGTTTGATTCTGTTCGTTGTAGATC 58.770 38.462 0.00 0.00 0.00 2.75
3711 4723 6.929049 AGTTTGATTCTGTTCGTTGTAGATCA 59.071 34.615 0.00 0.00 0.00 2.92
3712 4724 7.604164 AGTTTGATTCTGTTCGTTGTAGATCAT 59.396 33.333 0.00 0.00 0.00 2.45
3713 4725 7.905604 TTGATTCTGTTCGTTGTAGATCATT 57.094 32.000 0.00 0.00 0.00 2.57
3714 4726 7.294676 TGATTCTGTTCGTTGTAGATCATTG 57.705 36.000 0.00 0.00 0.00 2.82
3715 4727 5.530519 TTCTGTTCGTTGTAGATCATTGC 57.469 39.130 0.00 0.00 0.00 3.56
3716 4728 4.565022 TCTGTTCGTTGTAGATCATTGCA 58.435 39.130 0.00 0.00 0.00 4.08
4039 5051 8.549777 CGAGATTACTATAGTTGTGAGAACAC 57.450 38.462 11.40 0.00 46.09 3.32
4048 5060 3.444657 GTGAGAACACGCTTTGCTG 57.555 52.632 0.00 0.00 37.28 4.41
4049 5061 0.658536 GTGAGAACACGCTTTGCTGC 60.659 55.000 0.00 0.00 37.28 5.25
4050 5062 0.815213 TGAGAACACGCTTTGCTGCT 60.815 50.000 0.00 0.00 0.00 4.24
4051 5063 0.110464 GAGAACACGCTTTGCTGCTC 60.110 55.000 0.00 0.00 0.00 4.26
4052 5064 1.081840 GAACACGCTTTGCTGCTCC 60.082 57.895 0.00 0.00 0.00 4.70
4053 5065 2.463675 GAACACGCTTTGCTGCTCCC 62.464 60.000 0.00 0.00 0.00 4.30
4054 5066 3.741476 CACGCTTTGCTGCTCCCC 61.741 66.667 0.00 0.00 0.00 4.81
4055 5067 3.958860 ACGCTTTGCTGCTCCCCT 61.959 61.111 0.00 0.00 0.00 4.79
4056 5068 2.268920 CGCTTTGCTGCTCCCCTA 59.731 61.111 0.00 0.00 0.00 3.53
4057 5069 1.153086 CGCTTTGCTGCTCCCCTAT 60.153 57.895 0.00 0.00 0.00 2.57
4058 5070 1.162800 CGCTTTGCTGCTCCCCTATC 61.163 60.000 0.00 0.00 0.00 2.08
4059 5071 1.162800 GCTTTGCTGCTCCCCTATCG 61.163 60.000 0.00 0.00 0.00 2.92
4060 5072 0.533755 CTTTGCTGCTCCCCTATCGG 60.534 60.000 0.00 0.00 0.00 4.18
4061 5073 0.980754 TTTGCTGCTCCCCTATCGGA 60.981 55.000 0.00 0.00 0.00 4.55
4066 5078 3.784573 CTCCCCTATCGGAGCTGG 58.215 66.667 0.00 0.00 43.01 4.85
4067 5079 2.524394 TCCCCTATCGGAGCTGGC 60.524 66.667 0.00 0.00 0.00 4.85
4068 5080 2.525381 CCCCTATCGGAGCTGGCT 60.525 66.667 0.00 0.00 0.00 4.75
4069 5081 2.143419 CCCCTATCGGAGCTGGCTT 61.143 63.158 0.00 0.00 0.00 4.35
4070 5082 1.070445 CCCTATCGGAGCTGGCTTG 59.930 63.158 0.00 0.00 0.00 4.01
4071 5083 1.402896 CCCTATCGGAGCTGGCTTGA 61.403 60.000 0.00 0.00 0.00 3.02
4072 5084 0.249657 CCTATCGGAGCTGGCTTGAC 60.250 60.000 0.00 0.00 0.00 3.18
4073 5085 0.249657 CTATCGGAGCTGGCTTGACC 60.250 60.000 0.00 0.00 39.84 4.02
4087 5099 2.559698 TTGACCATGTCAATGACGGT 57.440 45.000 11.82 11.82 45.88 4.83
4088 5100 2.093306 TGACCATGTCAATGACGGTC 57.907 50.000 24.33 24.33 45.24 4.79
4089 5101 2.093306 GACCATGTCAATGACGGTCA 57.907 50.000 25.41 14.01 44.55 4.02
4090 5102 2.002586 GACCATGTCAATGACGGTCAG 58.997 52.381 25.41 10.11 44.55 3.51
4091 5103 1.339055 ACCATGTCAATGACGGTCAGG 60.339 52.381 16.84 12.11 35.67 3.86
4092 5104 1.066215 CCATGTCAATGACGGTCAGGA 60.066 52.381 16.84 13.17 35.67 3.86
4093 5105 2.615240 CCATGTCAATGACGGTCAGGAA 60.615 50.000 16.84 8.00 35.67 3.36
4094 5106 2.455674 TGTCAATGACGGTCAGGAAG 57.544 50.000 16.84 6.31 34.95 3.46
4095 5107 1.691976 TGTCAATGACGGTCAGGAAGT 59.308 47.619 16.84 0.00 34.95 3.01
4096 5108 2.288825 TGTCAATGACGGTCAGGAAGTC 60.289 50.000 16.84 6.00 34.95 3.01
4097 5109 2.028930 GTCAATGACGGTCAGGAAGTCT 60.029 50.000 16.84 0.00 36.01 3.24
4098 5110 2.632996 TCAATGACGGTCAGGAAGTCTT 59.367 45.455 16.84 1.12 36.01 3.01
4099 5111 2.996621 CAATGACGGTCAGGAAGTCTTC 59.003 50.000 16.84 3.80 36.01 2.87
4100 5112 1.699730 TGACGGTCAGGAAGTCTTCA 58.300 50.000 14.49 0.00 36.01 3.02
4101 5113 2.248248 TGACGGTCAGGAAGTCTTCAT 58.752 47.619 14.49 4.26 36.01 2.57
4102 5114 2.029020 TGACGGTCAGGAAGTCTTCATG 60.029 50.000 18.96 18.96 42.44 3.07
4103 5115 1.338200 ACGGTCAGGAAGTCTTCATGC 60.338 52.381 19.97 14.99 40.97 4.06
4104 5116 1.338105 CGGTCAGGAAGTCTTCATGCA 60.338 52.381 19.97 8.39 40.97 3.96
4105 5117 2.079925 GGTCAGGAAGTCTTCATGCAC 58.920 52.381 19.97 17.34 40.97 4.57
4106 5118 1.728971 GTCAGGAAGTCTTCATGCACG 59.271 52.381 19.97 0.00 40.97 5.34
4107 5119 1.344438 TCAGGAAGTCTTCATGCACGT 59.656 47.619 19.97 0.00 40.97 4.49
4108 5120 1.462283 CAGGAAGTCTTCATGCACGTG 59.538 52.381 13.83 12.28 34.49 4.49
4109 5121 0.166814 GGAAGTCTTCATGCACGTGC 59.833 55.000 33.11 33.11 42.50 5.34
4110 5122 0.166814 GAAGTCTTCATGCACGTGCC 59.833 55.000 35.72 19.24 41.18 5.01
4111 5123 0.250467 AAGTCTTCATGCACGTGCCT 60.250 50.000 35.72 25.10 41.18 4.75
4112 5124 0.671781 AGTCTTCATGCACGTGCCTC 60.672 55.000 35.72 14.88 41.18 4.70
4113 5125 0.671781 GTCTTCATGCACGTGCCTCT 60.672 55.000 35.72 18.80 41.18 3.69
4114 5126 0.894835 TCTTCATGCACGTGCCTCTA 59.105 50.000 35.72 19.27 41.18 2.43
4115 5127 1.275010 TCTTCATGCACGTGCCTCTAA 59.725 47.619 35.72 22.44 41.18 2.10
4116 5128 1.662629 CTTCATGCACGTGCCTCTAAG 59.337 52.381 35.72 26.64 41.18 2.18
4117 5129 0.108186 TCATGCACGTGCCTCTAAGG 60.108 55.000 35.72 19.59 41.18 2.69
4118 5130 0.108186 CATGCACGTGCCTCTAAGGA 60.108 55.000 35.72 16.53 37.67 3.36
4119 5131 0.108138 ATGCACGTGCCTCTAAGGAC 60.108 55.000 35.72 6.80 37.67 3.85
4120 5132 1.448013 GCACGTGCCTCTAAGGACC 60.448 63.158 30.12 0.00 37.67 4.46
4121 5133 1.972198 CACGTGCCTCTAAGGACCA 59.028 57.895 0.82 0.00 37.67 4.02
4122 5134 0.108615 CACGTGCCTCTAAGGACCAG 60.109 60.000 0.82 0.00 37.67 4.00
4123 5135 1.153549 CGTGCCTCTAAGGACCAGC 60.154 63.158 0.00 0.00 37.67 4.85
4124 5136 1.153549 GTGCCTCTAAGGACCAGCG 60.154 63.158 0.00 0.00 37.67 5.18
4125 5137 2.202946 GCCTCTAAGGACCAGCGC 60.203 66.667 0.00 0.00 37.67 5.92
4126 5138 2.501610 CCTCTAAGGACCAGCGCC 59.498 66.667 2.29 0.00 37.67 6.53
4127 5139 2.501610 CTCTAAGGACCAGCGCCC 59.498 66.667 2.29 0.00 0.00 6.13
4128 5140 3.432051 CTCTAAGGACCAGCGCCCG 62.432 68.421 2.29 0.00 0.00 6.13
4129 5141 4.530857 CTAAGGACCAGCGCCCGG 62.531 72.222 11.77 11.77 0.00 5.73
4145 5157 3.950232 GGGAGCCGAGTATCACCA 58.050 61.111 0.00 0.00 33.17 4.17
4146 5158 2.442056 GGGAGCCGAGTATCACCAT 58.558 57.895 0.00 0.00 33.17 3.55
4147 5159 0.318762 GGGAGCCGAGTATCACCATC 59.681 60.000 0.00 0.00 33.17 3.51
4148 5160 0.039074 GGAGCCGAGTATCACCATCG 60.039 60.000 0.00 0.00 36.24 3.84
4149 5161 0.664767 GAGCCGAGTATCACCATCGC 60.665 60.000 0.00 0.00 35.18 4.58
4150 5162 1.664965 GCCGAGTATCACCATCGCC 60.665 63.158 0.00 0.00 35.18 5.54
4151 5163 1.006102 CCGAGTATCACCATCGCCC 60.006 63.158 0.00 0.00 35.18 6.13
4152 5164 1.371758 CGAGTATCACCATCGCCCG 60.372 63.158 0.00 0.00 33.17 6.13
4153 5165 1.006102 GAGTATCACCATCGCCCGG 60.006 63.158 0.00 0.00 33.17 5.73
4154 5166 2.030562 GTATCACCATCGCCCGGG 59.969 66.667 19.09 19.09 0.00 5.73
4155 5167 2.123208 TATCACCATCGCCCGGGA 60.123 61.111 29.31 3.75 0.00 5.14
4156 5168 2.207229 TATCACCATCGCCCGGGAG 61.207 63.158 29.31 24.31 0.00 4.30
4170 5182 2.808598 GGGAGCCGAGTATCTGACA 58.191 57.895 0.00 0.00 0.00 3.58
4171 5183 0.386113 GGGAGCCGAGTATCTGACAC 59.614 60.000 0.00 0.00 0.00 3.67
4172 5184 0.386113 GGAGCCGAGTATCTGACACC 59.614 60.000 0.00 0.00 0.00 4.16
4173 5185 1.103803 GAGCCGAGTATCTGACACCA 58.896 55.000 0.00 0.00 0.00 4.17
4174 5186 1.476891 GAGCCGAGTATCTGACACCAA 59.523 52.381 0.00 0.00 0.00 3.67
4175 5187 1.899814 AGCCGAGTATCTGACACCAAA 59.100 47.619 0.00 0.00 0.00 3.28
4176 5188 2.501723 AGCCGAGTATCTGACACCAAAT 59.498 45.455 0.00 0.00 0.00 2.32
4177 5189 2.866762 GCCGAGTATCTGACACCAAATC 59.133 50.000 0.00 0.00 0.00 2.17
4178 5190 3.430929 GCCGAGTATCTGACACCAAATCT 60.431 47.826 0.00 0.00 0.00 2.40
4179 5191 4.363999 CCGAGTATCTGACACCAAATCTC 58.636 47.826 0.00 0.00 0.00 2.75
4180 5192 4.363999 CGAGTATCTGACACCAAATCTCC 58.636 47.826 0.00 0.00 0.00 3.71
4181 5193 4.698575 GAGTATCTGACACCAAATCTCCC 58.301 47.826 0.00 0.00 0.00 4.30
4182 5194 3.456277 AGTATCTGACACCAAATCTCCCC 59.544 47.826 0.00 0.00 0.00 4.81
4183 5195 0.613260 TCTGACACCAAATCTCCCCG 59.387 55.000 0.00 0.00 0.00 5.73
4184 5196 0.392998 CTGACACCAAATCTCCCCGG 60.393 60.000 0.00 0.00 0.00 5.73
4185 5197 1.131303 TGACACCAAATCTCCCCGGT 61.131 55.000 0.00 0.00 0.00 5.28
4186 5198 4.319133 CACCAAATCTCCCCGGTG 57.681 61.111 0.00 0.00 42.72 4.94
4187 5199 4.243550 ACCAAATCTCCCCGGTGA 57.756 55.556 0.00 0.00 0.00 4.02
4188 5200 1.991230 ACCAAATCTCCCCGGTGAG 59.009 57.895 7.75 7.75 0.00 3.51
4189 5201 0.546747 ACCAAATCTCCCCGGTGAGA 60.547 55.000 19.40 19.40 45.01 3.27
4193 5205 2.777853 TCTCCCCGGTGAGATGGT 59.222 61.111 13.12 0.00 36.48 3.55
4194 5206 2.012569 TCTCCCCGGTGAGATGGTA 58.987 57.895 13.12 0.00 36.48 3.25
4195 5207 0.106167 TCTCCCCGGTGAGATGGTAG 60.106 60.000 13.12 0.00 36.48 3.18
4196 5208 1.075525 TCCCCGGTGAGATGGTAGG 60.076 63.158 0.00 0.00 0.00 3.18
4197 5209 1.075525 CCCCGGTGAGATGGTAGGA 60.076 63.158 0.00 0.00 0.00 2.94
4198 5210 0.689745 CCCCGGTGAGATGGTAGGAA 60.690 60.000 0.00 0.00 0.00 3.36
4199 5211 1.424638 CCCGGTGAGATGGTAGGAAT 58.575 55.000 0.00 0.00 0.00 3.01
4200 5212 1.344763 CCCGGTGAGATGGTAGGAATC 59.655 57.143 0.00 0.00 0.00 2.52
4201 5213 2.320781 CCGGTGAGATGGTAGGAATCT 58.679 52.381 0.00 0.00 37.09 2.40
4202 5214 3.497332 CCGGTGAGATGGTAGGAATCTA 58.503 50.000 0.00 0.00 34.50 1.98
4203 5215 3.256136 CCGGTGAGATGGTAGGAATCTAC 59.744 52.174 0.00 0.00 43.82 2.59
4204 5216 3.058155 CGGTGAGATGGTAGGAATCTACG 60.058 52.174 0.00 0.00 45.10 3.51
4205 5217 4.142790 GGTGAGATGGTAGGAATCTACGA 58.857 47.826 0.00 0.00 45.10 3.43
4206 5218 4.023021 GGTGAGATGGTAGGAATCTACGAC 60.023 50.000 0.00 0.00 45.10 4.34
4207 5219 4.579340 GTGAGATGGTAGGAATCTACGACA 59.421 45.833 0.00 0.00 45.10 4.35
4208 5220 4.822350 TGAGATGGTAGGAATCTACGACAG 59.178 45.833 0.00 0.00 45.10 3.51
4209 5221 5.050126 AGATGGTAGGAATCTACGACAGA 57.950 43.478 0.00 0.00 45.10 3.41
4210 5222 5.636123 AGATGGTAGGAATCTACGACAGAT 58.364 41.667 0.00 0.00 46.48 2.90
4211 5223 5.475220 AGATGGTAGGAATCTACGACAGATG 59.525 44.000 5.30 0.00 43.56 2.90
4212 5224 4.788679 TGGTAGGAATCTACGACAGATGA 58.211 43.478 5.30 0.00 43.56 2.92
4213 5225 4.579340 TGGTAGGAATCTACGACAGATGAC 59.421 45.833 5.30 2.81 43.56 3.06
4214 5226 4.579340 GGTAGGAATCTACGACAGATGACA 59.421 45.833 5.30 0.00 43.56 3.58
4215 5227 4.640789 AGGAATCTACGACAGATGACAC 57.359 45.455 5.30 0.00 43.56 3.67
4216 5228 3.381908 AGGAATCTACGACAGATGACACC 59.618 47.826 5.30 7.04 43.56 4.16
4217 5229 3.130516 GGAATCTACGACAGATGACACCA 59.869 47.826 5.30 0.00 43.56 4.17
4218 5230 4.381612 GGAATCTACGACAGATGACACCAA 60.382 45.833 5.30 0.00 43.56 3.67
4219 5231 4.801330 ATCTACGACAGATGACACCAAA 57.199 40.909 3.93 0.00 42.69 3.28
4220 5232 4.801330 TCTACGACAGATGACACCAAAT 57.199 40.909 0.00 0.00 0.00 2.32
4221 5233 4.744570 TCTACGACAGATGACACCAAATC 58.255 43.478 0.00 0.00 0.00 2.17
4222 5234 3.685139 ACGACAGATGACACCAAATCT 57.315 42.857 0.00 0.00 33.34 2.40
4223 5235 3.589988 ACGACAGATGACACCAAATCTC 58.410 45.455 0.00 0.00 30.62 2.75
4224 5236 2.932614 CGACAGATGACACCAAATCTCC 59.067 50.000 0.00 0.00 30.62 3.71
4225 5237 3.274288 GACAGATGACACCAAATCTCCC 58.726 50.000 0.00 0.00 30.62 4.30
4226 5238 2.025887 ACAGATGACACCAAATCTCCCC 60.026 50.000 0.00 0.00 30.62 4.81
4227 5239 1.210478 AGATGACACCAAATCTCCCCG 59.790 52.381 0.00 0.00 0.00 5.73
4228 5240 1.209504 GATGACACCAAATCTCCCCGA 59.790 52.381 0.00 0.00 0.00 5.14
4229 5241 1.285280 TGACACCAAATCTCCCCGAT 58.715 50.000 0.00 0.00 0.00 4.18
4230 5242 1.065491 TGACACCAAATCTCCCCGATG 60.065 52.381 0.00 0.00 31.20 3.84
4231 5243 1.209504 GACACCAAATCTCCCCGATGA 59.790 52.381 0.00 0.00 31.20 2.92
4232 5244 1.210478 ACACCAAATCTCCCCGATGAG 59.790 52.381 0.00 0.00 31.20 2.90
4233 5245 1.486310 CACCAAATCTCCCCGATGAGA 59.514 52.381 6.36 6.36 45.01 3.27
4239 5251 2.294449 TCTCCCCGATGAGATGGTAG 57.706 55.000 0.36 0.00 36.48 3.18
4240 5252 1.203063 TCTCCCCGATGAGATGGTAGG 60.203 57.143 0.36 0.00 36.48 3.18
4241 5253 0.857675 TCCCCGATGAGATGGTAGGA 59.142 55.000 0.00 0.00 0.00 2.94
4242 5254 1.219469 TCCCCGATGAGATGGTAGGAA 59.781 52.381 0.00 0.00 0.00 3.36
4243 5255 2.158158 TCCCCGATGAGATGGTAGGAAT 60.158 50.000 0.00 0.00 0.00 3.01
4244 5256 2.234908 CCCCGATGAGATGGTAGGAATC 59.765 54.545 0.00 0.00 0.00 2.52
4245 5257 3.169099 CCCGATGAGATGGTAGGAATCT 58.831 50.000 0.00 0.00 37.09 2.40
4246 5258 4.344978 CCCGATGAGATGGTAGGAATCTA 58.655 47.826 0.00 0.00 34.50 1.98
4247 5259 4.158764 CCCGATGAGATGGTAGGAATCTAC 59.841 50.000 0.00 0.00 43.82 2.59
4248 5260 4.142578 CCGATGAGATGGTAGGAATCTACG 60.143 50.000 0.00 0.00 45.10 3.51
4249 5261 4.695928 CGATGAGATGGTAGGAATCTACGA 59.304 45.833 0.00 0.00 45.10 3.43
4250 5262 5.391097 CGATGAGATGGTAGGAATCTACGAC 60.391 48.000 0.00 0.00 45.10 4.34
4251 5263 5.050126 TGAGATGGTAGGAATCTACGACT 57.950 43.478 0.00 0.00 45.10 4.18
4252 5264 4.822350 TGAGATGGTAGGAATCTACGACTG 59.178 45.833 0.00 0.00 45.10 3.51
4253 5265 5.050126 AGATGGTAGGAATCTACGACTGA 57.950 43.478 0.00 0.00 45.10 3.41
4254 5266 5.067273 AGATGGTAGGAATCTACGACTGAG 58.933 45.833 0.00 0.00 45.10 3.35
4255 5267 2.950309 TGGTAGGAATCTACGACTGAGC 59.050 50.000 0.00 0.00 45.10 4.26
4256 5268 3.215975 GGTAGGAATCTACGACTGAGCT 58.784 50.000 0.00 0.00 45.10 4.09
4257 5269 3.251487 GGTAGGAATCTACGACTGAGCTC 59.749 52.174 6.82 6.82 45.10 4.09
4258 5270 1.944024 AGGAATCTACGACTGAGCTCG 59.056 52.381 9.64 6.63 39.68 5.03
4259 5271 1.941294 GGAATCTACGACTGAGCTCGA 59.059 52.381 9.64 0.00 37.11 4.04
4260 5272 2.550606 GGAATCTACGACTGAGCTCGAT 59.449 50.000 9.64 0.00 37.11 3.59
4261 5273 3.550561 GAATCTACGACTGAGCTCGATG 58.449 50.000 9.64 4.45 37.11 3.84
4262 5274 2.311124 TCTACGACTGAGCTCGATGA 57.689 50.000 9.64 0.00 37.11 2.92
4263 5275 2.205911 TCTACGACTGAGCTCGATGAG 58.794 52.381 9.64 3.04 37.11 2.90
4264 5276 2.159085 TCTACGACTGAGCTCGATGAGA 60.159 50.000 9.64 4.15 37.11 3.27
4265 5277 1.674359 ACGACTGAGCTCGATGAGAT 58.326 50.000 9.64 0.00 37.11 2.75
4266 5278 1.333308 ACGACTGAGCTCGATGAGATG 59.667 52.381 9.64 1.97 37.11 2.90
4267 5279 1.334870 CGACTGAGCTCGATGAGATGG 60.335 57.143 9.64 0.00 35.58 3.51
4268 5280 1.680735 GACTGAGCTCGATGAGATGGT 59.319 52.381 9.64 0.00 0.00 3.55
4269 5281 2.881513 GACTGAGCTCGATGAGATGGTA 59.118 50.000 9.64 0.00 0.00 3.25
4270 5282 2.884012 ACTGAGCTCGATGAGATGGTAG 59.116 50.000 9.64 0.00 0.00 3.18
4271 5283 2.228582 CTGAGCTCGATGAGATGGTAGG 59.771 54.545 9.64 0.00 0.00 3.18
4272 5284 2.158608 TGAGCTCGATGAGATGGTAGGA 60.159 50.000 9.64 0.00 0.00 2.94
4273 5285 2.887783 GAGCTCGATGAGATGGTAGGAA 59.112 50.000 0.00 0.00 0.00 3.36
4274 5286 3.505386 AGCTCGATGAGATGGTAGGAAT 58.495 45.455 0.00 0.00 0.00 3.01
4275 5287 3.509575 AGCTCGATGAGATGGTAGGAATC 59.490 47.826 0.00 0.00 0.00 2.52
4276 5288 3.509575 GCTCGATGAGATGGTAGGAATCT 59.490 47.826 0.00 0.00 37.09 2.40
4277 5289 4.702612 GCTCGATGAGATGGTAGGAATCTA 59.297 45.833 0.00 0.00 34.50 1.98
4278 5290 5.392595 GCTCGATGAGATGGTAGGAATCTAC 60.393 48.000 0.00 0.00 43.82 2.59
4279 5291 4.695928 TCGATGAGATGGTAGGAATCTACG 59.304 45.833 0.00 0.00 45.10 3.51
4280 5292 4.695928 CGATGAGATGGTAGGAATCTACGA 59.304 45.833 0.00 0.00 45.10 3.43
4281 5293 5.391097 CGATGAGATGGTAGGAATCTACGAC 60.391 48.000 0.00 0.00 45.10 4.34
4282 5294 5.050126 TGAGATGGTAGGAATCTACGACT 57.950 43.478 0.00 0.00 45.10 4.18
4283 5295 4.822350 TGAGATGGTAGGAATCTACGACTG 59.178 45.833 0.00 0.00 45.10 3.51
4284 5296 5.050126 AGATGGTAGGAATCTACGACTGA 57.950 43.478 0.00 0.00 45.10 3.41
4285 5297 5.067273 AGATGGTAGGAATCTACGACTGAG 58.933 45.833 0.00 0.00 45.10 3.35
4286 5298 2.950309 TGGTAGGAATCTACGACTGAGC 59.050 50.000 0.00 0.00 45.10 4.26
4287 5299 3.215975 GGTAGGAATCTACGACTGAGCT 58.784 50.000 0.00 0.00 45.10 4.09
4288 5300 3.251487 GGTAGGAATCTACGACTGAGCTC 59.749 52.174 6.82 6.82 45.10 4.09
4289 5301 1.944024 AGGAATCTACGACTGAGCTCG 59.056 52.381 9.64 6.63 39.68 5.03
4290 5302 1.002251 GGAATCTACGACTGAGCTCGG 60.002 57.143 21.32 21.32 38.02 4.63
4291 5303 1.002251 GAATCTACGACTGAGCTCGGG 60.002 57.143 26.07 15.30 38.02 5.14
4292 5304 0.820074 ATCTACGACTGAGCTCGGGG 60.820 60.000 26.07 18.89 38.02 5.73
4293 5305 3.127352 CTACGACTGAGCTCGGGGC 62.127 68.421 26.07 16.13 38.02 5.80
4320 5332 2.873288 CTTGCAAGGAGCCGAAGC 59.127 61.111 19.14 0.00 44.83 3.86
4321 5333 3.031964 CTTGCAAGGAGCCGAAGCG 62.032 63.158 19.14 0.00 46.67 4.68
4322 5334 3.529341 TTGCAAGGAGCCGAAGCGA 62.529 57.895 0.00 0.00 46.67 4.93
4323 5335 2.742372 GCAAGGAGCCGAAGCGAA 60.742 61.111 0.00 0.00 46.67 4.70
4324 5336 2.744768 GCAAGGAGCCGAAGCGAAG 61.745 63.158 0.00 0.00 46.67 3.79
4325 5337 2.103042 CAAGGAGCCGAAGCGAAGG 61.103 63.158 0.00 0.00 46.67 3.46
4326 5338 2.283529 AAGGAGCCGAAGCGAAGGA 61.284 57.895 0.00 0.00 46.67 3.36
4327 5339 2.508586 AAGGAGCCGAAGCGAAGGAC 62.509 60.000 0.00 0.00 46.67 3.85
4328 5340 2.881352 GAGCCGAAGCGAAGGACG 60.881 66.667 0.00 0.00 46.67 4.79
4329 5341 4.436998 AGCCGAAGCGAAGGACGG 62.437 66.667 0.00 0.00 46.67 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.759497 ACTGCACTTTTAAGTCTCAAAACT 57.241 33.333 0.00 0.00 37.08 2.66
12 13 9.344772 TCCTATAACTTTGAAACTGCACTTTTA 57.655 29.630 0.00 0.00 0.00 1.52
17 18 6.803154 AGTCCTATAACTTTGAAACTGCAC 57.197 37.500 0.00 0.00 0.00 4.57
19 20 8.228464 GTGTTAGTCCTATAACTTTGAAACTGC 58.772 37.037 0.00 0.00 36.73 4.40
88 93 6.535274 AAACGTGTGTCAATTTAGTCCTAC 57.465 37.500 0.00 0.00 0.00 3.18
92 97 8.333186 AGTCTTAAAACGTGTGTCAATTTAGTC 58.667 33.333 0.00 0.00 0.00 2.59
93 98 8.205131 AGTCTTAAAACGTGTGTCAATTTAGT 57.795 30.769 0.00 0.00 0.00 2.24
99 104 4.393680 AGCAAGTCTTAAAACGTGTGTCAA 59.606 37.500 0.00 0.00 32.16 3.18
107 112 1.810755 GGGGGAGCAAGTCTTAAAACG 59.189 52.381 0.00 0.00 0.00 3.60
114 119 3.003763 GGACGGGGGAGCAAGTCT 61.004 66.667 0.00 0.00 34.34 3.24
123 128 1.972795 TCTAATAAATCCGGACGGGGG 59.027 52.381 6.12 0.00 36.01 5.40
126 131 3.573110 AGAGGTCTAATAAATCCGGACGG 59.427 47.826 6.12 3.96 0.00 4.79
127 132 4.850347 AGAGGTCTAATAAATCCGGACG 57.150 45.455 6.12 0.00 0.00 4.79
128 133 7.046033 TGAAAAGAGGTCTAATAAATCCGGAC 58.954 38.462 6.12 0.00 0.00 4.79
198 204 9.477484 AAGACGTTTTCTATGATGACATATACC 57.523 33.333 0.00 0.00 38.17 2.73
204 210 7.722795 TTGAAAGACGTTTTCTATGATGACA 57.277 32.000 17.82 0.00 32.51 3.58
295 619 6.438108 GGGCCTCCTTACATTTTAGGTTTAAA 59.562 38.462 0.84 0.00 33.15 1.52
298 622 4.202738 TGGGCCTCCTTACATTTTAGGTTT 60.203 41.667 4.53 0.00 33.15 3.27
303 627 8.616799 AATTTATTGGGCCTCCTTACATTTTA 57.383 30.769 4.53 0.00 0.00 1.52
320 644 3.493503 GCTACCTCCGTCCGAATTTATTG 59.506 47.826 0.00 0.00 0.00 1.90
334 658 4.823989 AGTAAAATGCATCATGCTACCTCC 59.176 41.667 11.84 0.00 45.31 4.30
345 669 8.706035 GCCATTGAATATTGAGTAAAATGCATC 58.294 33.333 0.00 0.00 0.00 3.91
384 708 2.691526 TCATTGGAGGCAAGCATTCATC 59.308 45.455 0.00 0.00 0.00 2.92
411 735 5.193679 AGGGCTGTCACTTATTATTTGGAC 58.806 41.667 0.00 0.00 0.00 4.02
412 736 5.450818 AGGGCTGTCACTTATTATTTGGA 57.549 39.130 0.00 0.00 0.00 3.53
419 747 3.975168 ACGTTAGGGCTGTCACTTATT 57.025 42.857 0.00 0.00 0.00 1.40
498 853 9.740239 CAAGTATGATAACATTTTTCTGGATGG 57.260 33.333 0.00 0.00 37.87 3.51
570 925 6.400568 CATGAAAACATGGCAACTCCTAATT 58.599 36.000 0.00 0.00 35.26 1.40
584 939 4.877378 AAGTGTCATGGCATGAAAACAT 57.123 36.364 30.30 20.64 41.69 2.71
621 976 2.767505 TCTCTGCCTTCGTCCTTTTTC 58.232 47.619 0.00 0.00 0.00 2.29
622 977 2.930826 TCTCTGCCTTCGTCCTTTTT 57.069 45.000 0.00 0.00 0.00 1.94
623 978 2.368875 TCTTCTCTGCCTTCGTCCTTTT 59.631 45.455 0.00 0.00 0.00 2.27
732 1087 1.355066 GCTACGCTTGTCCACTGCTC 61.355 60.000 0.00 0.00 0.00 4.26
794 1149 2.996631 AGTTGAGATGGTGAATGCCTC 58.003 47.619 0.00 0.00 0.00 4.70
892 1247 4.557205 AGGAATATGAAATAGTCGACGGC 58.443 43.478 10.46 0.00 44.34 5.68
968 1330 1.213733 CTCGCAGATCTGATGCACCG 61.214 60.000 27.04 17.87 44.05 4.94
992 1354 4.148825 ACGGCGGCATCCTGAGTC 62.149 66.667 13.24 0.00 0.00 3.36
1155 1541 2.682856 GGCTATCTCGCAAACCAAATCA 59.317 45.455 0.00 0.00 0.00 2.57
1392 1780 1.305201 GGAGCTTGACACGGACAAAA 58.695 50.000 0.00 0.00 0.00 2.44
1446 1834 3.663815 GAGGAGGAGGAGGCCGTCA 62.664 68.421 0.00 0.00 0.00 4.35
1980 2400 2.690497 CAAGATGAGGTCCTCGAGCTTA 59.310 50.000 14.34 0.00 40.67 3.09
2363 3073 3.648739 ACCAGCCCTTTGTTCCTAAAAA 58.351 40.909 0.00 0.00 0.00 1.94
2477 3188 7.936847 TCATGATGTTAGTACAAAAGACCAAGT 59.063 33.333 0.00 0.00 37.91 3.16
2701 3433 2.101917 ACAGCTGGGCAAATATCAATGC 59.898 45.455 19.93 0.00 41.82 3.56
2914 3649 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
2964 3699 1.135333 CACTTCTACTCCCTCCGCTTC 59.865 57.143 0.00 0.00 0.00 3.86
2967 3702 1.760192 TACACTTCTACTCCCTCCGC 58.240 55.000 0.00 0.00 0.00 5.54
2969 3704 6.224584 GCATAAATACACTTCTACTCCCTCC 58.775 44.000 0.00 0.00 0.00 4.30
2971 3706 5.905913 AGGCATAAATACACTTCTACTCCCT 59.094 40.000 0.00 0.00 0.00 4.20
3012 3747 0.521242 GCGCGCCACAAATAGAACAG 60.521 55.000 23.24 0.00 0.00 3.16
3036 3771 1.134521 AGCAAGACACCTCACGAACAA 60.135 47.619 0.00 0.00 0.00 2.83
3109 3844 6.299141 TGCTTTCTCTAACATGTTTCTCCTT 58.701 36.000 17.78 0.00 0.00 3.36
3112 3847 7.417612 TGTTTGCTTTCTCTAACATGTTTCTC 58.582 34.615 17.78 0.00 29.42 2.87
3176 4188 2.740055 GCTAGCTGCTGCGTGTGT 60.740 61.111 13.43 0.00 45.42 3.72
3240 4252 7.487484 TGATCAAATGTAAAAGCAGAAACACA 58.513 30.769 0.00 0.00 0.00 3.72
3281 4293 8.517323 AAGGAGATGTAAGATCAGGGATTATT 57.483 34.615 0.00 0.00 0.00 1.40
3338 4350 3.513912 CCACCGGCTTCTGGATATATACA 59.486 47.826 0.00 0.00 0.00 2.29
3339 4351 3.767673 TCCACCGGCTTCTGGATATATAC 59.232 47.826 7.41 0.00 31.20 1.47
3466 4478 3.059393 GTGAAAGCACCCGTTAACTACAC 60.059 47.826 3.71 0.00 39.14 2.90
3511 4523 6.737254 ATGAACGGGTGTAATTTTCAGTAG 57.263 37.500 0.00 0.00 30.07 2.57
3512 4524 8.618702 TTAATGAACGGGTGTAATTTTCAGTA 57.381 30.769 0.00 0.00 30.07 2.74
3513 4525 7.513371 TTAATGAACGGGTGTAATTTTCAGT 57.487 32.000 0.00 0.00 30.07 3.41
3514 4526 7.540745 CCTTTAATGAACGGGTGTAATTTTCAG 59.459 37.037 0.00 0.00 30.07 3.02
3515 4527 7.230913 TCCTTTAATGAACGGGTGTAATTTTCA 59.769 33.333 0.00 0.00 0.00 2.69
3516 4528 7.595604 TCCTTTAATGAACGGGTGTAATTTTC 58.404 34.615 0.00 0.00 0.00 2.29
3517 4529 7.527568 TCCTTTAATGAACGGGTGTAATTTT 57.472 32.000 0.00 0.00 0.00 1.82
3518 4530 7.363443 CCATCCTTTAATGAACGGGTGTAATTT 60.363 37.037 0.00 0.00 0.00 1.82
3519 4531 6.096282 CCATCCTTTAATGAACGGGTGTAATT 59.904 38.462 0.00 0.00 0.00 1.40
3520 4532 5.592688 CCATCCTTTAATGAACGGGTGTAAT 59.407 40.000 0.00 0.00 0.00 1.89
3521 4533 4.944930 CCATCCTTTAATGAACGGGTGTAA 59.055 41.667 0.00 0.00 0.00 2.41
3522 4534 4.519213 CCATCCTTTAATGAACGGGTGTA 58.481 43.478 0.00 0.00 0.00 2.90
3523 4535 3.352648 CCATCCTTTAATGAACGGGTGT 58.647 45.455 0.00 0.00 0.00 4.16
3524 4536 2.687935 CCCATCCTTTAATGAACGGGTG 59.312 50.000 0.00 0.00 0.00 4.61
3525 4537 2.357777 CCCCATCCTTTAATGAACGGGT 60.358 50.000 0.00 0.00 30.26 5.28
3526 4538 2.306847 CCCCATCCTTTAATGAACGGG 58.693 52.381 0.00 0.00 0.00 5.28
3527 4539 3.012934 ACCCCATCCTTTAATGAACGG 57.987 47.619 0.00 0.00 0.00 4.44
3528 4540 4.705023 AGAAACCCCATCCTTTAATGAACG 59.295 41.667 0.00 0.00 0.00 3.95
3529 4541 5.714806 TGAGAAACCCCATCCTTTAATGAAC 59.285 40.000 0.00 0.00 0.00 3.18
3530 4542 5.898120 TGAGAAACCCCATCCTTTAATGAA 58.102 37.500 0.00 0.00 0.00 2.57
3531 4543 5.528600 TGAGAAACCCCATCCTTTAATGA 57.471 39.130 0.00 0.00 0.00 2.57
3532 4544 5.127682 CCTTGAGAAACCCCATCCTTTAATG 59.872 44.000 0.00 0.00 0.00 1.90
3533 4545 5.222547 ACCTTGAGAAACCCCATCCTTTAAT 60.223 40.000 0.00 0.00 0.00 1.40
3534 4546 4.107311 ACCTTGAGAAACCCCATCCTTTAA 59.893 41.667 0.00 0.00 0.00 1.52
3535 4547 3.660669 ACCTTGAGAAACCCCATCCTTTA 59.339 43.478 0.00 0.00 0.00 1.85
3536 4548 2.450886 ACCTTGAGAAACCCCATCCTTT 59.549 45.455 0.00 0.00 0.00 3.11
3537 4549 2.073776 ACCTTGAGAAACCCCATCCTT 58.926 47.619 0.00 0.00 0.00 3.36
3538 4550 1.760405 ACCTTGAGAAACCCCATCCT 58.240 50.000 0.00 0.00 0.00 3.24
3539 4551 2.562738 CAAACCTTGAGAAACCCCATCC 59.437 50.000 0.00 0.00 0.00 3.51
3540 4552 2.029020 GCAAACCTTGAGAAACCCCATC 60.029 50.000 0.00 0.00 0.00 3.51
3541 4553 1.970640 GCAAACCTTGAGAAACCCCAT 59.029 47.619 0.00 0.00 0.00 4.00
3542 4554 1.063266 AGCAAACCTTGAGAAACCCCA 60.063 47.619 0.00 0.00 0.00 4.96
3543 4555 1.704641 AGCAAACCTTGAGAAACCCC 58.295 50.000 0.00 0.00 0.00 4.95
3544 4556 3.132111 TCAAAGCAAACCTTGAGAAACCC 59.868 43.478 0.00 0.00 33.01 4.11
3545 4557 4.097892 TCTCAAAGCAAACCTTGAGAAACC 59.902 41.667 11.12 0.00 36.10 3.27
3546 4558 5.163612 ACTCTCAAAGCAAACCTTGAGAAAC 60.164 40.000 13.73 0.00 37.32 2.78
3547 4559 4.949856 ACTCTCAAAGCAAACCTTGAGAAA 59.050 37.500 13.73 0.00 37.32 2.52
3548 4560 4.526970 ACTCTCAAAGCAAACCTTGAGAA 58.473 39.130 13.73 1.67 37.32 2.87
3549 4561 4.156455 ACTCTCAAAGCAAACCTTGAGA 57.844 40.909 12.53 12.53 36.38 3.27
3550 4562 4.907879 AACTCTCAAAGCAAACCTTGAG 57.092 40.909 5.63 5.63 33.01 3.02
3551 4563 4.142182 CCAAACTCTCAAAGCAAACCTTGA 60.142 41.667 0.00 0.00 33.01 3.02
3552 4564 4.114794 CCAAACTCTCAAAGCAAACCTTG 58.885 43.478 0.00 0.00 33.01 3.61
3553 4565 4.023291 TCCAAACTCTCAAAGCAAACCTT 58.977 39.130 0.00 0.00 34.51 3.50
3554 4566 3.381590 GTCCAAACTCTCAAAGCAAACCT 59.618 43.478 0.00 0.00 0.00 3.50
3555 4567 3.130340 TGTCCAAACTCTCAAAGCAAACC 59.870 43.478 0.00 0.00 0.00 3.27
3556 4568 4.370364 TGTCCAAACTCTCAAAGCAAAC 57.630 40.909 0.00 0.00 0.00 2.93
3557 4569 5.596836 AATGTCCAAACTCTCAAAGCAAA 57.403 34.783 0.00 0.00 0.00 3.68
3558 4570 5.596836 AAATGTCCAAACTCTCAAAGCAA 57.403 34.783 0.00 0.00 0.00 3.91
3559 4571 5.596836 AAAATGTCCAAACTCTCAAAGCA 57.403 34.783 0.00 0.00 0.00 3.91
3560 4572 6.970484 TCTAAAATGTCCAAACTCTCAAAGC 58.030 36.000 0.00 0.00 0.00 3.51
3561 4573 8.571336 ACATCTAAAATGTCCAAACTCTCAAAG 58.429 33.333 0.00 0.00 0.00 2.77
3562 4574 8.352201 CACATCTAAAATGTCCAAACTCTCAAA 58.648 33.333 0.00 0.00 0.00 2.69
3563 4575 7.719193 TCACATCTAAAATGTCCAAACTCTCAA 59.281 33.333 0.00 0.00 0.00 3.02
3564 4576 7.223584 TCACATCTAAAATGTCCAAACTCTCA 58.776 34.615 0.00 0.00 0.00 3.27
3565 4577 7.672983 TCACATCTAAAATGTCCAAACTCTC 57.327 36.000 0.00 0.00 0.00 3.20
3566 4578 8.641498 ATTCACATCTAAAATGTCCAAACTCT 57.359 30.769 0.00 0.00 0.00 3.24
3567 4579 8.514594 TGATTCACATCTAAAATGTCCAAACTC 58.485 33.333 0.00 0.00 0.00 3.01
3568 4580 8.408043 TGATTCACATCTAAAATGTCCAAACT 57.592 30.769 0.00 0.00 0.00 2.66
3569 4581 9.643693 AATGATTCACATCTAAAATGTCCAAAC 57.356 29.630 0.00 0.00 38.38 2.93
3579 4591 9.830975 TCTTCGGATAAATGATTCACATCTAAA 57.169 29.630 0.00 0.00 38.38 1.85
3581 4593 9.645059 GATCTTCGGATAAATGATTCACATCTA 57.355 33.333 0.00 0.00 34.88 1.98
3582 4594 7.330454 CGATCTTCGGATAAATGATTCACATCT 59.670 37.037 0.00 0.00 35.68 2.90
3583 4595 7.451429 CGATCTTCGGATAAATGATTCACATC 58.549 38.462 0.00 0.00 35.68 3.06
3584 4596 7.356641 CGATCTTCGGATAAATGATTCACAT 57.643 36.000 0.00 0.00 37.21 3.21
3585 4597 6.769608 CGATCTTCGGATAAATGATTCACA 57.230 37.500 0.00 0.00 36.00 3.58
3600 4612 4.457603 AGAAGGATCTATGACCGATCTTCG 59.542 45.833 0.00 0.00 37.88 3.79
3601 4613 5.336372 CCAGAAGGATCTATGACCGATCTTC 60.336 48.000 0.00 0.00 37.88 2.87
3602 4614 4.526262 CCAGAAGGATCTATGACCGATCTT 59.474 45.833 0.00 0.00 37.88 2.40
3603 4615 4.085733 CCAGAAGGATCTATGACCGATCT 58.914 47.826 0.00 0.00 37.88 2.75
3604 4616 3.194542 CCCAGAAGGATCTATGACCGATC 59.805 52.174 0.00 0.00 38.24 3.69
3605 4617 3.169099 CCCAGAAGGATCTATGACCGAT 58.831 50.000 0.00 0.00 38.24 4.18
3606 4618 2.177016 TCCCAGAAGGATCTATGACCGA 59.823 50.000 0.00 0.00 40.93 4.69
3607 4619 2.598565 TCCCAGAAGGATCTATGACCG 58.401 52.381 0.00 0.00 40.93 4.79
3617 4629 1.195115 CATCCGAAGTCCCAGAAGGA 58.805 55.000 0.00 0.00 44.91 3.36
3618 4630 0.905357 ACATCCGAAGTCCCAGAAGG 59.095 55.000 0.00 0.00 0.00 3.46
3619 4631 1.827969 AGACATCCGAAGTCCCAGAAG 59.172 52.381 0.13 0.00 36.68 2.85
3620 4632 1.825474 GAGACATCCGAAGTCCCAGAA 59.175 52.381 0.13 0.00 36.68 3.02
3621 4633 1.006043 AGAGACATCCGAAGTCCCAGA 59.994 52.381 0.13 0.00 36.68 3.86
3622 4634 1.135915 CAGAGACATCCGAAGTCCCAG 59.864 57.143 0.13 0.00 36.68 4.45
3623 4635 1.186200 CAGAGACATCCGAAGTCCCA 58.814 55.000 0.13 0.00 36.68 4.37
3624 4636 0.461961 CCAGAGACATCCGAAGTCCC 59.538 60.000 0.13 0.00 36.68 4.46
3625 4637 0.461961 CCCAGAGACATCCGAAGTCC 59.538 60.000 0.13 0.00 36.68 3.85
3626 4638 1.475403 TCCCAGAGACATCCGAAGTC 58.525 55.000 0.00 0.00 36.26 3.01
3627 4639 1.938585 TTCCCAGAGACATCCGAAGT 58.061 50.000 0.00 0.00 0.00 3.01
3628 4640 2.622436 GTTTCCCAGAGACATCCGAAG 58.378 52.381 0.00 0.00 0.00 3.79
3629 4641 1.067142 CGTTTCCCAGAGACATCCGAA 60.067 52.381 0.00 0.00 0.00 4.30
3630 4642 0.530744 CGTTTCCCAGAGACATCCGA 59.469 55.000 0.00 0.00 0.00 4.55
3631 4643 0.460284 CCGTTTCCCAGAGACATCCG 60.460 60.000 0.00 0.00 0.00 4.18
3632 4644 0.107654 CCCGTTTCCCAGAGACATCC 60.108 60.000 0.00 0.00 0.00 3.51
3633 4645 0.744771 GCCCGTTTCCCAGAGACATC 60.745 60.000 0.00 0.00 0.00 3.06
3634 4646 1.299976 GCCCGTTTCCCAGAGACAT 59.700 57.895 0.00 0.00 0.00 3.06
3635 4647 1.488705 ATGCCCGTTTCCCAGAGACA 61.489 55.000 0.00 0.00 0.00 3.41
3636 4648 0.744771 GATGCCCGTTTCCCAGAGAC 60.745 60.000 0.00 0.00 0.00 3.36
3637 4649 1.602237 GATGCCCGTTTCCCAGAGA 59.398 57.895 0.00 0.00 0.00 3.10
3638 4650 1.815421 CGATGCCCGTTTCCCAGAG 60.815 63.158 0.00 0.00 0.00 3.35
3639 4651 2.267642 CGATGCCCGTTTCCCAGA 59.732 61.111 0.00 0.00 0.00 3.86
3640 4652 2.824041 CCGATGCCCGTTTCCCAG 60.824 66.667 0.00 0.00 36.31 4.45
3641 4653 4.418328 CCCGATGCCCGTTTCCCA 62.418 66.667 0.00 0.00 36.31 4.37
3644 4656 3.810896 GTGCCCGATGCCCGTTTC 61.811 66.667 0.00 0.00 40.16 2.78
3645 4657 4.652131 TGTGCCCGATGCCCGTTT 62.652 61.111 0.00 0.00 40.16 3.60
3646 4658 3.936772 ATTGTGCCCGATGCCCGTT 62.937 57.895 0.00 0.00 40.16 4.44
3647 4659 4.424711 ATTGTGCCCGATGCCCGT 62.425 61.111 0.00 0.00 40.16 5.28
3648 4660 3.585990 GATTGTGCCCGATGCCCG 61.586 66.667 0.00 0.00 40.16 6.13
3649 4661 2.051518 TTGATTGTGCCCGATGCCC 61.052 57.895 0.00 0.00 40.16 5.36
3650 4662 1.139520 GTTGATTGTGCCCGATGCC 59.860 57.895 0.00 0.00 40.16 4.40
3651 4663 0.243365 TTGTTGATTGTGCCCGATGC 59.757 50.000 0.00 0.00 41.77 3.91
3652 4664 1.811965 TCTTGTTGATTGTGCCCGATG 59.188 47.619 0.00 0.00 0.00 3.84
3653 4665 1.812571 GTCTTGTTGATTGTGCCCGAT 59.187 47.619 0.00 0.00 0.00 4.18
3654 4666 1.202758 AGTCTTGTTGATTGTGCCCGA 60.203 47.619 0.00 0.00 0.00 5.14
3655 4667 1.238439 AGTCTTGTTGATTGTGCCCG 58.762 50.000 0.00 0.00 0.00 6.13
3656 4668 2.749621 CCTAGTCTTGTTGATTGTGCCC 59.250 50.000 0.00 0.00 0.00 5.36
3657 4669 2.162408 GCCTAGTCTTGTTGATTGTGCC 59.838 50.000 0.00 0.00 0.00 5.01
3658 4670 2.159653 CGCCTAGTCTTGTTGATTGTGC 60.160 50.000 0.00 0.00 0.00 4.57
3659 4671 3.067106 ACGCCTAGTCTTGTTGATTGTG 58.933 45.455 0.00 0.00 0.00 3.33
3660 4672 3.402628 ACGCCTAGTCTTGTTGATTGT 57.597 42.857 0.00 0.00 0.00 2.71
3661 4673 5.671329 GCTTTACGCCTAGTCTTGTTGATTG 60.671 44.000 0.00 0.00 0.00 2.67
3662 4674 4.392138 GCTTTACGCCTAGTCTTGTTGATT 59.608 41.667 0.00 0.00 0.00 2.57
3663 4675 3.933332 GCTTTACGCCTAGTCTTGTTGAT 59.067 43.478 0.00 0.00 0.00 2.57
3664 4676 3.243941 TGCTTTACGCCTAGTCTTGTTGA 60.244 43.478 0.00 0.00 38.05 3.18
3665 4677 3.064207 TGCTTTACGCCTAGTCTTGTTG 58.936 45.455 0.00 0.00 38.05 3.33
3666 4678 3.244112 ACTGCTTTACGCCTAGTCTTGTT 60.244 43.478 0.00 0.00 38.05 2.83
3667 4679 2.299297 ACTGCTTTACGCCTAGTCTTGT 59.701 45.455 0.00 0.00 38.05 3.16
3668 4680 2.960819 ACTGCTTTACGCCTAGTCTTG 58.039 47.619 0.00 0.00 38.05 3.02
3669 4681 3.679824 AACTGCTTTACGCCTAGTCTT 57.320 42.857 0.00 0.00 38.05 3.01
3670 4682 3.006537 TCAAACTGCTTTACGCCTAGTCT 59.993 43.478 0.00 0.00 38.05 3.24
3671 4683 3.323243 TCAAACTGCTTTACGCCTAGTC 58.677 45.455 0.00 0.00 38.05 2.59
3672 4684 3.396260 TCAAACTGCTTTACGCCTAGT 57.604 42.857 0.00 0.00 38.05 2.57
3673 4685 4.631813 AGAATCAAACTGCTTTACGCCTAG 59.368 41.667 0.00 0.00 38.05 3.02
3674 4686 4.391830 CAGAATCAAACTGCTTTACGCCTA 59.608 41.667 0.00 0.00 38.05 3.93
3675 4687 3.189287 CAGAATCAAACTGCTTTACGCCT 59.811 43.478 0.00 0.00 38.05 5.52
3676 4688 3.058224 ACAGAATCAAACTGCTTTACGCC 60.058 43.478 0.00 0.00 38.74 5.68
3677 4689 4.147219 ACAGAATCAAACTGCTTTACGC 57.853 40.909 0.00 0.00 38.74 4.42
3678 4690 4.840772 CGAACAGAATCAAACTGCTTTACG 59.159 41.667 0.00 0.00 38.74 3.18
3679 4691 5.748592 ACGAACAGAATCAAACTGCTTTAC 58.251 37.500 0.00 0.00 38.74 2.01
3680 4692 6.183360 ACAACGAACAGAATCAAACTGCTTTA 60.183 34.615 0.00 0.00 38.74 1.85
3681 4693 4.900635 ACGAACAGAATCAAACTGCTTT 57.099 36.364 0.00 0.00 38.74 3.51
3682 4694 4.096382 ACAACGAACAGAATCAAACTGCTT 59.904 37.500 0.00 0.00 38.74 3.91
3683 4695 3.627577 ACAACGAACAGAATCAAACTGCT 59.372 39.130 0.00 0.00 38.74 4.24
3684 4696 3.952535 ACAACGAACAGAATCAAACTGC 58.047 40.909 0.00 0.00 38.74 4.40
3685 4697 6.525121 TCTACAACGAACAGAATCAAACTG 57.475 37.500 0.00 0.00 40.68 3.16
3686 4698 6.929049 TGATCTACAACGAACAGAATCAAACT 59.071 34.615 0.00 0.00 0.00 2.66
3687 4699 7.117241 TGATCTACAACGAACAGAATCAAAC 57.883 36.000 0.00 0.00 0.00 2.93
3688 4700 7.905604 ATGATCTACAACGAACAGAATCAAA 57.094 32.000 0.00 0.00 0.00 2.69
3689 4701 7.624134 GCAATGATCTACAACGAACAGAATCAA 60.624 37.037 0.00 0.00 0.00 2.57
3690 4702 6.183360 GCAATGATCTACAACGAACAGAATCA 60.183 38.462 0.00 0.00 0.00 2.57
3691 4703 6.183360 TGCAATGATCTACAACGAACAGAATC 60.183 38.462 0.00 0.00 0.00 2.52
3692 4704 5.643348 TGCAATGATCTACAACGAACAGAAT 59.357 36.000 0.00 0.00 0.00 2.40
3693 4705 4.994217 TGCAATGATCTACAACGAACAGAA 59.006 37.500 0.00 0.00 0.00 3.02
3694 4706 4.565022 TGCAATGATCTACAACGAACAGA 58.435 39.130 0.00 0.00 0.00 3.41
3695 4707 4.926860 TGCAATGATCTACAACGAACAG 57.073 40.909 0.00 0.00 0.00 3.16
4014 5026 7.373703 CGTGTTCTCACAACTATAGTAATCTCG 59.626 40.741 5.65 1.23 44.02 4.04
4015 5027 7.166142 GCGTGTTCTCACAACTATAGTAATCTC 59.834 40.741 5.65 0.00 44.02 2.75
4016 5028 6.973474 GCGTGTTCTCACAACTATAGTAATCT 59.027 38.462 5.65 0.00 44.02 2.40
4017 5029 6.973474 AGCGTGTTCTCACAACTATAGTAATC 59.027 38.462 5.65 0.00 44.02 1.75
4018 5030 6.864342 AGCGTGTTCTCACAACTATAGTAAT 58.136 36.000 5.65 0.00 44.02 1.89
4019 5031 6.263516 AGCGTGTTCTCACAACTATAGTAA 57.736 37.500 5.65 0.00 44.02 2.24
4020 5032 5.892160 AGCGTGTTCTCACAACTATAGTA 57.108 39.130 5.65 0.00 44.02 1.82
4021 5033 4.785511 AGCGTGTTCTCACAACTATAGT 57.214 40.909 0.00 0.00 44.02 2.12
4022 5034 5.668866 GCAAAGCGTGTTCTCACAACTATAG 60.669 44.000 0.00 0.00 44.02 1.31
4023 5035 4.151689 GCAAAGCGTGTTCTCACAACTATA 59.848 41.667 0.00 0.00 44.02 1.31
4024 5036 3.058914 GCAAAGCGTGTTCTCACAACTAT 60.059 43.478 0.00 0.00 44.02 2.12
4025 5037 2.286833 GCAAAGCGTGTTCTCACAACTA 59.713 45.455 0.00 0.00 44.02 2.24
4026 5038 1.064060 GCAAAGCGTGTTCTCACAACT 59.936 47.619 0.00 0.00 44.02 3.16
4027 5039 1.064060 AGCAAAGCGTGTTCTCACAAC 59.936 47.619 0.00 0.00 44.02 3.32
4028 5040 1.063912 CAGCAAAGCGTGTTCTCACAA 59.936 47.619 0.00 0.00 44.02 3.33
4029 5041 0.657312 CAGCAAAGCGTGTTCTCACA 59.343 50.000 0.00 0.00 44.02 3.58
4030 5042 0.658536 GCAGCAAAGCGTGTTCTCAC 60.659 55.000 0.00 0.00 40.79 3.51
4031 5043 0.815213 AGCAGCAAAGCGTGTTCTCA 60.815 50.000 0.00 0.00 40.15 3.27
4032 5044 0.110464 GAGCAGCAAAGCGTGTTCTC 60.110 55.000 0.00 0.00 40.15 2.87
4033 5045 1.510480 GGAGCAGCAAAGCGTGTTCT 61.510 55.000 0.00 0.00 40.15 3.01
4034 5046 1.081840 GGAGCAGCAAAGCGTGTTC 60.082 57.895 0.00 0.00 40.15 3.18
4035 5047 2.555547 GGGAGCAGCAAAGCGTGTT 61.556 57.895 0.00 0.00 40.15 3.32
4036 5048 2.980233 GGGAGCAGCAAAGCGTGT 60.980 61.111 0.00 0.00 40.15 4.49
4037 5049 2.803155 TAGGGGAGCAGCAAAGCGTG 62.803 60.000 0.00 0.00 40.15 5.34
4038 5050 1.915078 ATAGGGGAGCAGCAAAGCGT 61.915 55.000 0.00 0.00 40.15 5.07
4039 5051 1.153086 ATAGGGGAGCAGCAAAGCG 60.153 57.895 0.00 0.00 40.15 4.68
4040 5052 1.162800 CGATAGGGGAGCAGCAAAGC 61.163 60.000 0.00 0.00 0.00 3.51
4041 5053 2.997899 CGATAGGGGAGCAGCAAAG 58.002 57.895 0.00 0.00 0.00 2.77
4054 5066 0.249657 GGTCAAGCCAGCTCCGATAG 60.250 60.000 0.00 0.00 37.17 2.08
4055 5067 0.975556 TGGTCAAGCCAGCTCCGATA 60.976 55.000 0.00 0.00 43.61 2.92
4056 5068 2.293318 TGGTCAAGCCAGCTCCGAT 61.293 57.895 0.00 0.00 43.61 4.18
4057 5069 2.922503 TGGTCAAGCCAGCTCCGA 60.923 61.111 0.00 0.00 43.61 4.55
4069 5081 1.346068 TGACCGTCATTGACATGGTCA 59.654 47.619 28.38 28.38 44.52 4.02
4070 5082 2.002586 CTGACCGTCATTGACATGGTC 58.997 52.381 25.27 25.27 40.76 4.02
4071 5083 1.339055 CCTGACCGTCATTGACATGGT 60.339 52.381 16.61 15.25 30.97 3.55
4072 5084 1.066215 TCCTGACCGTCATTGACATGG 60.066 52.381 16.61 12.36 32.09 3.66
4073 5085 2.385013 TCCTGACCGTCATTGACATG 57.615 50.000 16.61 9.27 32.09 3.21
4074 5086 2.303022 ACTTCCTGACCGTCATTGACAT 59.697 45.455 16.61 4.06 32.09 3.06
4075 5087 1.691976 ACTTCCTGACCGTCATTGACA 59.308 47.619 16.61 0.00 32.09 3.58
4076 5088 2.028930 AGACTTCCTGACCGTCATTGAC 60.029 50.000 6.73 6.73 0.00 3.18
4077 5089 2.248248 AGACTTCCTGACCGTCATTGA 58.752 47.619 0.62 0.00 0.00 2.57
4078 5090 2.751166 AGACTTCCTGACCGTCATTG 57.249 50.000 0.62 0.00 0.00 2.82
4079 5091 2.632996 TGAAGACTTCCTGACCGTCATT 59.367 45.455 12.66 0.00 0.00 2.57
4080 5092 2.248248 TGAAGACTTCCTGACCGTCAT 58.752 47.619 12.66 0.00 0.00 3.06
4081 5093 1.699730 TGAAGACTTCCTGACCGTCA 58.300 50.000 12.66 0.29 0.00 4.35
4082 5094 2.611518 CATGAAGACTTCCTGACCGTC 58.388 52.381 13.52 0.00 0.00 4.79
4083 5095 1.338200 GCATGAAGACTTCCTGACCGT 60.338 52.381 20.71 0.00 0.00 4.83
4084 5096 1.338105 TGCATGAAGACTTCCTGACCG 60.338 52.381 20.71 2.52 0.00 4.79
4085 5097 2.079925 GTGCATGAAGACTTCCTGACC 58.920 52.381 20.71 8.67 0.00 4.02
4086 5098 1.728971 CGTGCATGAAGACTTCCTGAC 59.271 52.381 20.71 14.73 0.00 3.51
4087 5099 1.344438 ACGTGCATGAAGACTTCCTGA 59.656 47.619 20.71 6.60 0.00 3.86
4088 5100 1.462283 CACGTGCATGAAGACTTCCTG 59.538 52.381 14.17 13.52 0.00 3.86
4089 5101 1.800805 CACGTGCATGAAGACTTCCT 58.199 50.000 14.17 0.00 0.00 3.36
4090 5102 0.166814 GCACGTGCATGAAGACTTCC 59.833 55.000 34.52 0.00 41.59 3.46
4091 5103 0.166814 GGCACGTGCATGAAGACTTC 59.833 55.000 38.60 15.88 44.36 3.01
4092 5104 0.250467 AGGCACGTGCATGAAGACTT 60.250 50.000 38.60 11.56 44.36 3.01
4093 5105 0.671781 GAGGCACGTGCATGAAGACT 60.672 55.000 38.60 25.28 44.36 3.24
4094 5106 0.671781 AGAGGCACGTGCATGAAGAC 60.672 55.000 38.60 21.32 44.36 3.01
4095 5107 0.894835 TAGAGGCACGTGCATGAAGA 59.105 50.000 38.60 17.55 44.36 2.87
4096 5108 1.662629 CTTAGAGGCACGTGCATGAAG 59.337 52.381 38.60 30.15 44.36 3.02
4097 5109 1.675714 CCTTAGAGGCACGTGCATGAA 60.676 52.381 38.60 26.14 44.36 2.57
4098 5110 0.108186 CCTTAGAGGCACGTGCATGA 60.108 55.000 38.60 21.23 44.36 3.07
4099 5111 0.108186 TCCTTAGAGGCACGTGCATG 60.108 55.000 38.60 21.45 44.36 4.06
4100 5112 0.108138 GTCCTTAGAGGCACGTGCAT 60.108 55.000 38.60 34.65 44.36 3.96
4101 5113 1.292223 GTCCTTAGAGGCACGTGCA 59.708 57.895 38.60 18.47 44.36 4.57
4102 5114 1.448013 GGTCCTTAGAGGCACGTGC 60.448 63.158 32.15 32.15 34.61 5.34
4103 5115 0.108615 CTGGTCCTTAGAGGCACGTG 60.109 60.000 12.28 12.28 34.61 4.49
4104 5116 1.889530 GCTGGTCCTTAGAGGCACGT 61.890 60.000 0.00 0.00 34.61 4.49
4105 5117 1.153549 GCTGGTCCTTAGAGGCACG 60.154 63.158 0.00 0.00 34.61 5.34
4106 5118 1.153549 CGCTGGTCCTTAGAGGCAC 60.154 63.158 0.00 0.00 34.61 5.01
4107 5119 3.019003 GCGCTGGTCCTTAGAGGCA 62.019 63.158 0.00 0.00 34.61 4.75
4108 5120 2.202946 GCGCTGGTCCTTAGAGGC 60.203 66.667 0.00 0.00 34.61 4.70
4109 5121 2.501610 GGCGCTGGTCCTTAGAGG 59.498 66.667 7.64 0.00 36.46 3.69
4110 5122 2.501610 GGGCGCTGGTCCTTAGAG 59.498 66.667 7.64 0.00 34.09 2.43
4111 5123 3.458163 CGGGCGCTGGTCCTTAGA 61.458 66.667 7.64 0.00 35.04 2.10
4112 5124 4.530857 CCGGGCGCTGGTCCTTAG 62.531 72.222 7.64 0.00 35.04 2.18
4128 5140 0.318762 GATGGTGATACTCGGCTCCC 59.681 60.000 0.00 0.00 0.00 4.30
4129 5141 0.039074 CGATGGTGATACTCGGCTCC 60.039 60.000 0.00 0.00 0.00 4.70
4130 5142 0.664767 GCGATGGTGATACTCGGCTC 60.665 60.000 0.00 0.00 33.17 4.70
4131 5143 1.364171 GCGATGGTGATACTCGGCT 59.636 57.895 0.00 0.00 33.17 5.52
4132 5144 3.938112 GCGATGGTGATACTCGGC 58.062 61.111 0.00 0.00 33.17 5.54
4133 5145 1.006102 GGGCGATGGTGATACTCGG 60.006 63.158 0.00 0.00 33.17 4.63
4134 5146 1.371758 CGGGCGATGGTGATACTCG 60.372 63.158 0.00 0.00 35.57 4.18
4135 5147 1.006102 CCGGGCGATGGTGATACTC 60.006 63.158 0.00 0.00 0.00 2.59
4136 5148 2.507854 CCCGGGCGATGGTGATACT 61.508 63.158 8.08 0.00 0.00 2.12
4137 5149 2.030562 CCCGGGCGATGGTGATAC 59.969 66.667 8.08 0.00 0.00 2.24
4138 5150 2.123208 TCCCGGGCGATGGTGATA 60.123 61.111 18.49 0.00 0.00 2.15
4139 5151 3.550431 CTCCCGGGCGATGGTGAT 61.550 66.667 18.49 0.00 0.00 3.06
4152 5164 0.386113 GTGTCAGATACTCGGCTCCC 59.614 60.000 0.00 0.00 0.00 4.30
4153 5165 0.386113 GGTGTCAGATACTCGGCTCC 59.614 60.000 0.00 0.00 0.00 4.70
4154 5166 1.103803 TGGTGTCAGATACTCGGCTC 58.896 55.000 0.00 0.00 0.00 4.70
4155 5167 1.557099 TTGGTGTCAGATACTCGGCT 58.443 50.000 0.00 0.00 0.00 5.52
4156 5168 2.380084 TTTGGTGTCAGATACTCGGC 57.620 50.000 0.00 0.00 0.00 5.54
4157 5169 4.363999 GAGATTTGGTGTCAGATACTCGG 58.636 47.826 0.00 0.00 0.00 4.63
4158 5170 4.363999 GGAGATTTGGTGTCAGATACTCG 58.636 47.826 0.00 0.00 0.00 4.18
4159 5171 4.443598 GGGGAGATTTGGTGTCAGATACTC 60.444 50.000 0.00 0.00 0.00 2.59
4160 5172 3.456277 GGGGAGATTTGGTGTCAGATACT 59.544 47.826 0.00 0.00 0.00 2.12
4161 5173 3.741388 CGGGGAGATTTGGTGTCAGATAC 60.741 52.174 0.00 0.00 0.00 2.24
4162 5174 2.434336 CGGGGAGATTTGGTGTCAGATA 59.566 50.000 0.00 0.00 0.00 1.98
4163 5175 1.210478 CGGGGAGATTTGGTGTCAGAT 59.790 52.381 0.00 0.00 0.00 2.90
4164 5176 0.613260 CGGGGAGATTTGGTGTCAGA 59.387 55.000 0.00 0.00 0.00 3.27
4165 5177 0.392998 CCGGGGAGATTTGGTGTCAG 60.393 60.000 0.00 0.00 0.00 3.51
4166 5178 1.131303 ACCGGGGAGATTTGGTGTCA 61.131 55.000 6.32 0.00 32.33 3.58
4167 5179 0.676782 CACCGGGGAGATTTGGTGTC 60.677 60.000 6.32 0.00 45.34 3.67
4168 5180 1.378762 CACCGGGGAGATTTGGTGT 59.621 57.895 6.32 0.00 45.34 4.16
4169 5181 4.319133 CACCGGGGAGATTTGGTG 57.681 61.111 6.32 0.00 45.17 4.17
4170 5182 0.546747 TCTCACCGGGGAGATTTGGT 60.547 55.000 32.83 0.00 38.95 3.67
4171 5183 2.296920 TCTCACCGGGGAGATTTGG 58.703 57.895 32.83 7.25 38.95 3.28
4177 5189 1.115930 CCTACCATCTCACCGGGGAG 61.116 65.000 28.77 28.77 36.21 4.30
4178 5190 1.075525 CCTACCATCTCACCGGGGA 60.076 63.158 6.08 6.08 0.00 4.81
4179 5191 0.689745 TTCCTACCATCTCACCGGGG 60.690 60.000 6.32 0.00 0.00 5.73
4180 5192 1.344763 GATTCCTACCATCTCACCGGG 59.655 57.143 6.32 0.00 0.00 5.73
4181 5193 2.320781 AGATTCCTACCATCTCACCGG 58.679 52.381 0.00 0.00 0.00 5.28
4182 5194 3.058155 CGTAGATTCCTACCATCTCACCG 60.058 52.174 0.00 0.00 41.68 4.94
4183 5195 4.023021 GTCGTAGATTCCTACCATCTCACC 60.023 50.000 0.00 0.00 41.68 4.02
4184 5196 4.579340 TGTCGTAGATTCCTACCATCTCAC 59.421 45.833 0.00 0.00 41.68 3.51
4185 5197 4.788679 TGTCGTAGATTCCTACCATCTCA 58.211 43.478 0.00 0.00 41.68 3.27
4186 5198 5.064558 TCTGTCGTAGATTCCTACCATCTC 58.935 45.833 0.00 0.00 41.68 2.75
4187 5199 5.050126 TCTGTCGTAGATTCCTACCATCT 57.950 43.478 0.00 0.00 41.68 2.90
4188 5200 5.473846 TCATCTGTCGTAGATTCCTACCATC 59.526 44.000 2.85 0.00 43.68 3.51
4189 5201 5.241949 GTCATCTGTCGTAGATTCCTACCAT 59.758 44.000 2.85 0.00 43.68 3.55
4190 5202 4.579340 GTCATCTGTCGTAGATTCCTACCA 59.421 45.833 2.85 0.00 43.68 3.25
4191 5203 4.579340 TGTCATCTGTCGTAGATTCCTACC 59.421 45.833 2.85 0.00 43.68 3.18
4192 5204 5.505985 GGTGTCATCTGTCGTAGATTCCTAC 60.506 48.000 2.85 0.00 43.68 3.18
4193 5205 4.579340 GGTGTCATCTGTCGTAGATTCCTA 59.421 45.833 2.85 0.00 43.68 2.94
4194 5206 3.381908 GGTGTCATCTGTCGTAGATTCCT 59.618 47.826 2.85 0.00 43.68 3.36
4195 5207 3.130516 TGGTGTCATCTGTCGTAGATTCC 59.869 47.826 2.85 4.87 43.68 3.01
4196 5208 4.371855 TGGTGTCATCTGTCGTAGATTC 57.628 45.455 2.85 1.76 43.68 2.52
4197 5209 4.801330 TTGGTGTCATCTGTCGTAGATT 57.199 40.909 2.85 0.00 43.68 2.40
4199 5211 4.462834 AGATTTGGTGTCATCTGTCGTAGA 59.537 41.667 0.00 0.00 40.37 2.59
4200 5212 4.748892 AGATTTGGTGTCATCTGTCGTAG 58.251 43.478 0.00 0.00 0.00 3.51
4201 5213 4.381612 GGAGATTTGGTGTCATCTGTCGTA 60.382 45.833 0.00 0.00 29.41 3.43
4202 5214 3.589988 GAGATTTGGTGTCATCTGTCGT 58.410 45.455 0.00 0.00 29.41 4.34
4203 5215 2.932614 GGAGATTTGGTGTCATCTGTCG 59.067 50.000 0.00 0.00 29.41 4.35
4204 5216 3.274288 GGGAGATTTGGTGTCATCTGTC 58.726 50.000 0.00 0.00 29.41 3.51
4205 5217 2.025887 GGGGAGATTTGGTGTCATCTGT 60.026 50.000 0.00 0.00 29.41 3.41
4206 5218 2.648059 GGGGAGATTTGGTGTCATCTG 58.352 52.381 0.00 0.00 29.41 2.90
4207 5219 1.210478 CGGGGAGATTTGGTGTCATCT 59.790 52.381 0.00 0.00 32.11 2.90
4208 5220 1.209504 TCGGGGAGATTTGGTGTCATC 59.790 52.381 0.00 0.00 0.00 2.92
4209 5221 1.285280 TCGGGGAGATTTGGTGTCAT 58.715 50.000 0.00 0.00 0.00 3.06
4210 5222 1.065491 CATCGGGGAGATTTGGTGTCA 60.065 52.381 0.00 0.00 37.52 3.58
4211 5223 1.209504 TCATCGGGGAGATTTGGTGTC 59.790 52.381 0.00 0.00 37.52 3.67
4212 5224 1.210478 CTCATCGGGGAGATTTGGTGT 59.790 52.381 0.00 0.00 37.52 4.16
4213 5225 1.486310 TCTCATCGGGGAGATTTGGTG 59.514 52.381 3.28 0.00 38.95 4.17
4214 5226 1.879575 TCTCATCGGGGAGATTTGGT 58.120 50.000 3.28 0.00 38.95 3.67
4221 5233 1.203063 TCCTACCATCTCATCGGGGAG 60.203 57.143 0.00 0.00 36.21 4.30
4222 5234 0.857675 TCCTACCATCTCATCGGGGA 59.142 55.000 0.00 0.00 0.00 4.81
4223 5235 1.717032 TTCCTACCATCTCATCGGGG 58.283 55.000 0.00 0.00 0.00 5.73
4224 5236 3.169099 AGATTCCTACCATCTCATCGGG 58.831 50.000 0.00 0.00 0.00 5.14
4225 5237 4.142578 CGTAGATTCCTACCATCTCATCGG 60.143 50.000 0.00 0.00 41.68 4.18
4226 5238 4.695928 TCGTAGATTCCTACCATCTCATCG 59.304 45.833 0.00 0.00 41.68 3.84
4227 5239 5.708230 AGTCGTAGATTCCTACCATCTCATC 59.292 44.000 0.00 0.00 41.68 2.92
4228 5240 5.475220 CAGTCGTAGATTCCTACCATCTCAT 59.525 44.000 0.00 0.00 41.68 2.90
4229 5241 4.822350 CAGTCGTAGATTCCTACCATCTCA 59.178 45.833 0.00 0.00 41.68 3.27
4230 5242 5.064558 TCAGTCGTAGATTCCTACCATCTC 58.935 45.833 0.00 0.00 41.68 2.75
4231 5243 5.050126 TCAGTCGTAGATTCCTACCATCT 57.950 43.478 0.00 0.00 41.68 2.90
4232 5244 4.320641 GCTCAGTCGTAGATTCCTACCATC 60.321 50.000 0.00 0.00 41.68 3.51
4233 5245 3.570550 GCTCAGTCGTAGATTCCTACCAT 59.429 47.826 0.00 0.00 41.68 3.55
4234 5246 2.950309 GCTCAGTCGTAGATTCCTACCA 59.050 50.000 0.00 0.00 41.68 3.25
4235 5247 3.215975 AGCTCAGTCGTAGATTCCTACC 58.784 50.000 0.00 0.00 41.68 3.18
4236 5248 3.059461 CGAGCTCAGTCGTAGATTCCTAC 60.059 52.174 15.40 0.00 40.67 3.18
4237 5249 3.132160 CGAGCTCAGTCGTAGATTCCTA 58.868 50.000 15.40 0.00 40.67 2.94
4238 5250 1.944024 CGAGCTCAGTCGTAGATTCCT 59.056 52.381 15.40 0.00 40.67 3.36
4239 5251 1.941294 TCGAGCTCAGTCGTAGATTCC 59.059 52.381 15.40 0.00 40.67 3.01
4240 5252 3.248841 TCATCGAGCTCAGTCGTAGATTC 59.751 47.826 15.40 0.00 40.67 2.52
4241 5253 3.206964 TCATCGAGCTCAGTCGTAGATT 58.793 45.455 15.40 0.00 40.67 2.40
4242 5254 2.805671 CTCATCGAGCTCAGTCGTAGAT 59.194 50.000 15.40 3.34 40.67 1.98
4243 5255 2.159085 TCTCATCGAGCTCAGTCGTAGA 60.159 50.000 15.40 5.54 40.93 2.59
4244 5256 2.205911 TCTCATCGAGCTCAGTCGTAG 58.794 52.381 15.40 3.16 40.93 3.51
4245 5257 2.311124 TCTCATCGAGCTCAGTCGTA 57.689 50.000 15.40 0.00 40.93 3.43
4246 5258 1.333308 CATCTCATCGAGCTCAGTCGT 59.667 52.381 15.40 0.00 40.93 4.34
4247 5259 1.334870 CCATCTCATCGAGCTCAGTCG 60.335 57.143 15.40 0.00 41.51 4.18
4248 5260 1.680735 ACCATCTCATCGAGCTCAGTC 59.319 52.381 15.40 0.00 0.00 3.51
4249 5261 1.774110 ACCATCTCATCGAGCTCAGT 58.226 50.000 15.40 0.00 0.00 3.41
4250 5262 2.228582 CCTACCATCTCATCGAGCTCAG 59.771 54.545 15.40 6.88 0.00 3.35
4251 5263 2.158608 TCCTACCATCTCATCGAGCTCA 60.159 50.000 15.40 1.08 0.00 4.26
4252 5264 2.509569 TCCTACCATCTCATCGAGCTC 58.490 52.381 2.73 2.73 0.00 4.09
4253 5265 2.666272 TCCTACCATCTCATCGAGCT 57.334 50.000 0.00 0.00 0.00 4.09
4254 5266 3.509575 AGATTCCTACCATCTCATCGAGC 59.490 47.826 0.00 0.00 0.00 5.03
4255 5267 5.163804 CGTAGATTCCTACCATCTCATCGAG 60.164 48.000 0.00 0.00 41.68 4.04
4256 5268 4.695928 CGTAGATTCCTACCATCTCATCGA 59.304 45.833 0.00 0.00 41.68 3.59
4257 5269 4.695928 TCGTAGATTCCTACCATCTCATCG 59.304 45.833 0.00 0.00 41.68 3.84
4258 5270 5.708230 AGTCGTAGATTCCTACCATCTCATC 59.292 44.000 0.00 0.00 41.68 2.92
4259 5271 5.475220 CAGTCGTAGATTCCTACCATCTCAT 59.525 44.000 0.00 0.00 41.68 2.90
4260 5272 4.822350 CAGTCGTAGATTCCTACCATCTCA 59.178 45.833 0.00 0.00 41.68 3.27
4261 5273 5.064558 TCAGTCGTAGATTCCTACCATCTC 58.935 45.833 0.00 0.00 41.68 2.75
4262 5274 5.050126 TCAGTCGTAGATTCCTACCATCT 57.950 43.478 0.00 0.00 41.68 2.90
4263 5275 4.320641 GCTCAGTCGTAGATTCCTACCATC 60.321 50.000 0.00 0.00 41.68 3.51
4264 5276 3.570550 GCTCAGTCGTAGATTCCTACCAT 59.429 47.826 0.00 0.00 41.68 3.55
4265 5277 2.950309 GCTCAGTCGTAGATTCCTACCA 59.050 50.000 0.00 0.00 41.68 3.25
4266 5278 3.215975 AGCTCAGTCGTAGATTCCTACC 58.784 50.000 0.00 0.00 41.68 3.18
4267 5279 3.059461 CGAGCTCAGTCGTAGATTCCTAC 60.059 52.174 15.40 0.00 40.67 3.18
4268 5280 3.132160 CGAGCTCAGTCGTAGATTCCTA 58.868 50.000 15.40 0.00 40.67 2.94
4269 5281 1.944024 CGAGCTCAGTCGTAGATTCCT 59.056 52.381 15.40 0.00 40.67 3.36
4270 5282 1.002251 CCGAGCTCAGTCGTAGATTCC 60.002 57.143 15.40 0.00 40.67 3.01
4271 5283 1.002251 CCCGAGCTCAGTCGTAGATTC 60.002 57.143 15.40 0.00 40.67 2.52
4272 5284 1.025812 CCCGAGCTCAGTCGTAGATT 58.974 55.000 15.40 0.00 40.67 2.40
4273 5285 0.820074 CCCCGAGCTCAGTCGTAGAT 60.820 60.000 15.40 0.00 40.67 1.98
4274 5286 1.451567 CCCCGAGCTCAGTCGTAGA 60.452 63.158 15.40 0.00 38.32 2.59
4275 5287 3.111939 CCCCGAGCTCAGTCGTAG 58.888 66.667 15.40 0.00 38.32 3.51
4276 5288 3.138798 GCCCCGAGCTCAGTCGTA 61.139 66.667 15.40 0.00 38.32 3.43
4296 5308 3.121030 CTCCTTGCAAGGCGACCG 61.121 66.667 36.24 19.02 46.06 4.79
4297 5309 3.435186 GCTCCTTGCAAGGCGACC 61.435 66.667 36.24 20.92 46.06 4.79
4298 5310 3.435186 GGCTCCTTGCAAGGCGAC 61.435 66.667 36.24 30.91 46.06 5.19
4301 5313 2.672996 TTCGGCTCCTTGCAAGGC 60.673 61.111 36.24 26.03 46.06 4.35
4303 5315 2.873288 GCTTCGGCTCCTTGCAAG 59.127 61.111 19.93 19.93 45.15 4.01
4304 5316 3.049674 CGCTTCGGCTCCTTGCAA 61.050 61.111 0.00 0.00 45.15 4.08
4305 5317 3.529341 TTCGCTTCGGCTCCTTGCA 62.529 57.895 0.00 0.00 45.15 4.08
4306 5318 2.742372 TTCGCTTCGGCTCCTTGC 60.742 61.111 0.00 0.00 39.13 4.01
4307 5319 2.103042 CCTTCGCTTCGGCTCCTTG 61.103 63.158 0.00 0.00 39.13 3.61
4308 5320 2.266055 CCTTCGCTTCGGCTCCTT 59.734 61.111 0.00 0.00 39.13 3.36
4309 5321 2.680352 TCCTTCGCTTCGGCTCCT 60.680 61.111 0.00 0.00 39.13 3.69
4310 5322 2.509561 GTCCTTCGCTTCGGCTCC 60.510 66.667 0.00 0.00 39.13 4.70
4311 5323 2.881352 CGTCCTTCGCTTCGGCTC 60.881 66.667 0.00 0.00 39.13 4.70
4312 5324 4.436998 CCGTCCTTCGCTTCGGCT 62.437 66.667 0.00 0.00 39.13 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.